Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 231 of 325
Found at i:75674691 original size:60 final size:60
Alignment explanation
Indices: 75674598--75674716 Score: 220
Period size: 60 Copynumber: 2.0 Consensus size: 60
75674588 TTGTTTTTTA
* *
75674598 TAATTATTTTAAAATTAATTTCTTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAACTGTTGTGTTTG
75674658 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAACTGTTGTGTTT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAACTGTTGTGTTT
75674717 AGTTTAGTAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.33, C:0.02, G:0.13, T:0.53
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAACTGTTGTGTTTG
Found at i:75674905 original size:106 final size:106
Alignment explanation
Indices: 75674775--75675100 Score: 507
Period size: 104 Copynumber: 3.1 Consensus size: 106
75674765 TATTTTGTTA
*
75674775 GTGA-TTTTTTGGTAATGTAATTTTTAAAAAAAAATAATTTTATAGTTATTTTGTTAGTAATTTA
1 GTGATTTTTTTAGTAATGT-ATTTTTAAAAAAAAATAATTTTATAGTTATTTTGTTAGTAATTTA
*
75674839 TGATTAGGTTATATAAATTGTTTGTGTTTAGTTATGTGTTTT
65 TGATTAGGTTATATAAATTGTTAGTGTTTAGTTATGTGTTTT
***
75674881 GTGATTTTTTTAGTAATGTATTTTTTTTAAAAAATAATTTTATAGTTATTTTGTTAGTAATTTAT
1 GTGATTTTTTTAGTAATGTATTTTTAAAAAAAAATAATTTTATAGTTATTTTGTTAGTAATTTAT
* * *
75674946 AATTAGATTATATAAATTGTTAGTGTTT-GTAATGTGTTTT
66 GATTAGGTTATATAAATTGTTAGTGTTTAGTTATGTGTTTT
* * *
75674986 GT-AATTTTTTAGTAATGTATTTTTAAAAAAAAATAATTTTATAATTAATTTGTTAGTAATTTAT
1 GTGATTTTTTTAGTAATGTATTTTTAAAAAAAAATAATTTTATAGTTATTTTGTTAGTAATTTAT
75675050 GATTAGGTTATATAAATTGTTAGTGTTTAGTT-TAGTGTTTT
66 GATTAGGTTATATAAATTGTTAGTGTTTAGTTAT-GTGTTTT
75675091 GTGATTTTTT
1 GTGATTTTTT
75675101 AATGTAATTT
Statistics
Matches: 198, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
104 83 0.42
105 24 0.12
106 78 0.39
107 13 0.07
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (106 bp):
GTGATTTTTTTAGTAATGTATTTTTAAAAAAAAATAATTTTATAGTTATTTTGTTAGTAATTTAT
GATTAGGTTATATAAATTGTTAGTGTTTAGTTATGTGTTTT
Found at i:75676336 original size:30 final size:29
Alignment explanation
Indices: 75676302--75676389 Score: 131
Period size: 30 Copynumber: 2.9 Consensus size: 29
75676292 GCTAAGGCCA
* *
75676302 TGTTCCCCACACAGCCGAGACACAGGGTGG
1 TGTTCCCCACAC-GCCGAGACACACGGCGG
75676332 TGTTCCCCACACGGCCGAGACACACGGCGG
1 TGTTCCCCACAC-GCCGAGACACACGGCGG
75676362 TGTTCCCCACACGACCGAGACACACGGC
1 TGTTCCCCACACG-CCGAGACACACGGC
75676390 CTTGTCTCTG
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
29 1 0.02
30 53 0.98
ACGTcount: A:0.23, C:0.39, G:0.27, T:0.11
Consensus pattern (29 bp):
TGTTCCCCACACGCCGAGACACACGGCGG
Found at i:75677640 original size:29 final size:29
Alignment explanation
Indices: 75677601--75677711 Score: 123
Period size: 29 Copynumber: 3.8 Consensus size: 29
75677591 GGCCCATCTC
* *
75677601 ATTCTTATGGCCCGTCAGGCCCAATTCAA
1 ATTCATATGGCCCATCAGGCCCAATTCAA
*
75677630 ATTCATATGGCCCATCAGGCCCAATTCAT
1 ATTCATATGGCCCATCAGGCCCAATTCAA
* * * *
75677659 ATTCATATGGCCTATTAGGCCCAAATCAC
1 ATTCATATGGCCCATCAGGCCCAATTCAA
* * * *
75677688 CTTTATATGGCTCATTAGGCCCAA
1 ATTCATATGGCCCATCAGGCCCAA
75677712 ATCACCTTAT
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
ATTCATATGGCCCATCAGGCCCAATTCAA
Found at i:75677712 original size:29 final size:28
Alignment explanation
Indices: 75677634--75677723 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 28
75677624 ATTCAAATTC
* * ** *
75677634 ATATGGCCCATCAGGCCCAATTCATATTC
1 ATATGG-CCATTAGGCCCAAATCACCTTT
75677663 ATATGGCCTATTAGGCCCAAATCACCTTT
1 ATATGGCC-ATTAGGCCCAAATCACCTTT
75677692 ATATGGCTCATTAGGCCCAAATCACC-TT
1 ATATGGC-CATTAGGCCCAAATCACCTTT
75677720 ATAT
1 ATAT
75677724 TCATGCTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
28 8 0.15
29 45 0.83
30 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (28 bp):
ATATGGCCATTAGGCCCAAATCACCTTT
Found at i:75683177 original size:48 final size:48
Alignment explanation
Indices: 75683094--75683267 Score: 235
Period size: 48 Copynumber: 3.6 Consensus size: 48
75683084 ATATCGGTGT
75683094 CGATGCCATGT-CCAGACATGGTCTTACACTAGCACACATATCATCGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCATCGC
* * *
75683141 CGATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCATCGC
* *** *
75683189 CGATGTCATGTCCCAGACATGGTCTTACACTAGCTGTCATGTCGGAT-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATC--ATCGC
*
75683238 CGATGCCATGTCCCAGACATAGTCTTACAC
1 CGATGCCATGTCCCAGACATGGTCTTACAC
75683268 AGGATCTCAT
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
47 11 0.10
48 69 0.62
49 30 0.27
50 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCATCGC
Found at i:75683263 original size:97 final size:95
Alignment explanation
Indices: 75683094--75683267 Score: 251
Period size: 97 Copynumber: 1.8 Consensus size: 95
75683084 ATATCGGTGT
*
75683094 CGATGCCATGTCCAGACATGGTCTTACACTAGCACACATATCATCGCCGATGCCATGTCCTAGAC
1 CGATGCCATGTCCAGACATGGTCTTACACTAGCACACATATCATCGCCGATGCCATGTCCCAGAC
*
75683159 ATGGTCTTACACTGGCACACATATCAACGC
66 ATAGTCTTACACTGGCACACATATCAACGC
* *** *
75683189 CGATGTCATGTCCCAGACATGGTCTTACACTAGCTGTCATGTCGGAT-GCCGATGCCATGTCCCA
1 CGATGCCATGT-CCAGACATGGTCTTACACTAGCACACATATC--ATCGCCGATGCCATGTCCCA
75683253 GACATAGTCTTACAC
63 GACATAGTCTTACAC
75683268 AGGATCTCAT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
95 10 0.14
96 27 0.39
97 30 0.43
98 2 0.03
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (95 bp):
CGATGCCATGTCCAGACATGGTCTTACACTAGCACACATATCATCGCCGATGCCATGTCCCAGAC
ATAGTCTTACACTGGCACACATATCAACGC
Found at i:75689774 original size:41 final size:40
Alignment explanation
Indices: 75689729--75689890 Score: 170
Period size: 41 Copynumber: 3.9 Consensus size: 40
75689719 TCTTAGTACC
75689729 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACCACT
1 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGA-CACT
* * *
75689770 GGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-TTATGACACT
1 GGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGATTA-GACACT
* *
75689810 GGCTCTAAAAAGCCCTTCGAAACTAAGCTCGGCTATTAG-CACT
1 GGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--ATTAGACACT
75689853 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTTAGAC
1 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGA-TTAGAC
75689891 CCCGATTAGC
Statistics
Matches: 101, Mismatches: 8, Indels: 24
0.76 0.06 0.18
Matches are distributed among these distances:
39 1 0.01
40 18 0.18
41 49 0.49
42 19 0.19
43 10 0.10
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (40 bp):
GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACACT
Found at i:75698174 original size:41 final size:40
Alignment explanation
Indices: 75698129--75698290 Score: 143
Period size: 41 Copynumber: 3.9 Consensus size: 40
75698119 TCTTAGTACC
75698129 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACCACT
1 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGA-CACT
* * * *
75698170 GGCTCGAAGGCCTTTCG-GAACTAAG-TCCGG-TTATGACACT
1 GGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGATTA-GACACT
* *
75698210 GGCTCTAAAAAGCCCTTCGAAACTAAGCTCGGCTATTAG-CACT
1 GGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--ATTAGACACT
* *
75698253 GGCTCAAAAGCCCTTCGAGACCTAGCTCAGATTTAGAC
1 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGA-TTAGAC
75698291 CCCGATTAGC
Statistics
Matches: 97, Mismatches: 12, Indels: 24
0.73 0.09 0.18
Matches are distributed among these distances:
39 1 0.01
40 18 0.19
41 46 0.47
42 18 0.19
43 10 0.10
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACACT
Found at i:75701983 original size:48 final size:48
Alignment explanation
Indices: 75701931--75702164 Score: 288
Period size: 48 Copynumber: 4.9 Consensus size: 48
75701921 TACGAAGTCT
* *
75701931 CATATCAGTGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCACA
1 CATATCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
* *
75701979 CATATCATTGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCACA
1 CATATCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
** * * *
75702027 CATATCAACGTCGATGCCATGTCCCATACATGCTCTTACACTGGCACA
1 CATATCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
* ** * * *
75702075 CGTATCAACGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT
1 CATATCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
* * * *
75702123 CATCTCGGATGCCGATGCCACGTCCCAGATATGGTCTTACAC
1 CATATCAG-TGCCGATGCCATGTCCCAGACATGGTCTTACAC
75702165 GGGCTCTCAT
Statistics
Matches: 160, Mismatches: 25, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
48 131 0.82
49 29 0.18
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (48 bp):
CATATCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
Found at i:75704020 original size:23 final size:23
Alignment explanation
Indices: 75703990--75704042 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
75703980 ATTAGTCACC
*
75703990 AATCATATGTATTTTCACTCGTT
1 AATCATATGTATTTCCACTCGTT
75704013 AATCATATGTATTTCCACTCGTT
1 AATCATATGTATTTCCACTCGTT
75704036 AATCATA
1 AATCATA
75704043 CACGGTTCTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.30, C:0.19, G:0.08, T:0.43
Consensus pattern (23 bp):
AATCATATGTATTTCCACTCGTT
Found at i:75704838 original size:33 final size:33
Alignment explanation
Indices: 75704780--75704874 Score: 84
Period size: 33 Copynumber: 2.9 Consensus size: 33
75704770 CATCCTAGCT
* ** *
75704780 CGTATCCACCTCAATACTCCGCTCCTTCCGGCC
1 CGTATCCACCGCCGTACTCCACTCCTTCCGGCC
* * *
75704813 CGTATCCACCGTCGTACTCTACTCC-TCTCGGCT
1 CGTATCCACCGCCGTACTCCACTCCTTC-CGGCC
* * *
75704846 TGTATCCACTGCCGTACTCCACTACTTCC
1 CGTATCCACCGCCGTACTCCACTCCTTCC
75704875 AGCTCAAGTT
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
32 2 0.04
33 44 0.92
34 2 0.04
ACGTcount: A:0.15, C:0.44, G:0.13, T:0.28
Consensus pattern (33 bp):
CGTATCCACCGCCGTACTCCACTCCTTCCGGCC
Found at i:75705152 original size:76 final size:74
Alignment explanation
Indices: 75705069--75705208 Score: 199
Period size: 76 Copynumber: 1.9 Consensus size: 74
75705059 AATAACTTCA
* * *
75705069 TATTTATGTAATGAATTTTTCGCCATTTTATTTATCAATTTTATGGTTTTTTTTGCAATTTAAAT
1 TATTTATGTAATGAATTTTTCGCCATTTCAGTTATCAATTTTA-GG-ATTTTTTGCAATTTAAAT
75705134 AGTCAACTTTG
64 AGTCAACTTTG
* * * *
75705145 TATTTATGTAATGACTTTTTTGCTATTTCAGTTATTAATTTTAGGATTTTTTGCAATTTAAATA
1 TATTTATGTAATGAATTTTTCGCCATTTCAGTTATCAATTTTAGGATTTTTTGCAATTTAAATA
75705209 AATAAACTTT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 18 0.32
75 2 0.04
76 37 0.65
ACGTcount: A:0.27, C:0.08, G:0.11, T:0.54
Consensus pattern (74 bp):
TATTTATGTAATGAATTTTTCGCCATTTCAGTTATCAATTTTAGGATTTTTTGCAATTTAAATAG
TCAACTTTG
Found at i:75706654 original size:3 final size:3
Alignment explanation
Indices: 75706642--75706679 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
75706632 TTAATATAGA
75706642 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
75706680 ATAGTAAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:75706775 original size:20 final size:19
Alignment explanation
Indices: 75706750--75706789 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
75706740 AAAGCAGGGG
75706750 AAGGAAAGAAAGAAAGGAGA
1 AAGGAAAGAAA-AAAGGAGA
*
75706770 AAGGAAAGAAAAAGGGAGA
1 AAGGAAAGAAAAAAGGAGA
75706789 A
1 A
75706790 TTAAGGTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (19 bp):
AAGGAAAGAAAAAAGGAGA
Found at i:75708066 original size:18 final size:18
Alignment explanation
Indices: 75708043--75708106 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
75708033 TAAAAAAAGA
*
75708043 TACTGAATAATTAACTGC
1 TACTGAATAACTAACTGC
* **
75708061 TACTGAATAACTGACTAT
1 TACTGAATAACTAACTGC
*
75708079 TACTGGATAACTAACTGC
1 TACTGAATAACTAACTGC
*
75708097 TACTGCATAA
1 TACTGAATAA
75708107 AAAAATTGTT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (18 bp):
TACTGAATAACTAACTGC
Found at i:75708158 original size:18 final size:18
Alignment explanation
Indices: 75708114--75708158 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
75708104 TAAAAAAATT
*
75708114 GTTACTGAATAATTGATT
1 GTTACTGAATAATTGATC
* * *
75708132 ATTATTGAATAATTTATC
1 GTTACTGAATAATTGATC
75708150 GTTACTGAA
1 GTTACTGAA
75708159 AAACTGGCTA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.36, C:0.07, G:0.13, T:0.44
Consensus pattern (18 bp):
GTTACTGAATAATTGATC
Found at i:75709054 original size:30 final size:30
Alignment explanation
Indices: 75709018--75709078 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
75709008 CAACCTGTAG
75709018 AATGTAGCCGAGAAAACAGATGATATTGAA
1 AATGTAGCCGAGAAAACAGATGATATTGAA
*
75709048 AATGTAGCCGAGAAGACAGATGATATTGAA
1 AATGTAGCCGAGAAAACAGATGATATTGAA
75709078 A
1 A
75709079 GATATCGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.46, C:0.10, G:0.25, T:0.20
Consensus pattern (30 bp):
AATGTAGCCGAGAAAACAGATGATATTGAA
Found at i:75711334 original size:27 final size:27
Alignment explanation
Indices: 75711304--75711363 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
75711294 CGTCTGTCAT
** *
75711304 ATAGGCTCCACCAGTCGCGCTTACCAG
1 ATAGGCTCCACCAGTCAAGCCTACCAG
*
75711331 ATAGGCTCTACCAGTCAAGCCTACCAG
1 ATAGGCTCCACCAGTCAAGCCTACCAG
75711358 ATAGGC
1 ATAGGC
75711364 GTCACTTACC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.27, C:0.33, G:0.22, T:0.18
Consensus pattern (27 bp):
ATAGGCTCCACCAGTCAAGCCTACCAG
Found at i:75713218 original size:50 final size:51
Alignment explanation
Indices: 75713118--75713220 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
75713108 CCACCTTTTT
75713118 CTCCAATCATCAAGCTATCATTAATTTTTTCTTTCTTTCTTTAAATTTGTG
1 CTCCAATCATCAAGCTATCATTAATTTTTTCTTTCTTTCTTTAAATTTGTG
75713169 CTCCAATCATCAAGCTATCATTAATTTTTT-TTTCTTTCTTTAAATTTGTG
1 CTCCAATCATCAAGCTATCATTAATTTTTTCTTTCTTTCTTTAAATTTGTG
75713219 CT
1 CT
75713221 GTTATTAATA
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 22 0.42
51 30 0.58
ACGTcount: A:0.23, C:0.19, G:0.06, T:0.51
Consensus pattern (51 bp):
CTCCAATCATCAAGCTATCATTAATTTTTTCTTTCTTTCTTTAAATTTGTG
Found at i:75718058 original size:34 final size:34
Alignment explanation
Indices: 75718015--75718082 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
75718005 TTAGCTCGAG
75718015 GTTGGAGATCATCGGAGGCAGCATCACACTATAA
1 GTTGGAGATCATCGGAGGCAGCATCACACTATAA
75718049 GTTGGAGATCATCGGAGGCAGCATCACACTATAA
1 GTTGGAGATCATCGGAGGCAGCATCACACTATAA
75718083 AATTATCAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (34 bp):
GTTGGAGATCATCGGAGGCAGCATCACACTATAA
Found at i:75719339 original size:16 final size:16
Alignment explanation
Indices: 75719320--75719353 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
75719310 ATCAAAAAAC
75719320 AAGAAATCAAATCAAT
1 AAGAAATCAAATCAAT
* *
75719336 AAGAAATCGAGTCAAT
1 AAGAAATCAAATCAAT
75719352 AA
1 AA
75719354 TATGCTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.12, G:0.12, T:0.18
Consensus pattern (16 bp):
AAGAAATCAAATCAAT
Found at i:75723219 original size:90 final size:90
Alignment explanation
Indices: 75723065--75723308 Score: 337
Period size: 90 Copynumber: 2.7 Consensus size: 90
75723055 ATCCATAGAA
* * * **
75723065 TTTCTGGCAGCTCTTATCTACAATTATGTTGTGTATTCACAACCATTTGGCAACGTATGCACCTA
1 TTTCTGGCAGCTCTTATCTACAAATATGTTGTGTATTCACAACCATCTGGCAGCGTATTAACCTA
* *
75723130 AAACACTGGTGGTTCATCCACATAT
66 AAACACTAGTGGTTCATCCACATAC
* * *
75723155 TTTCTGGCAGCTCTTATCTACAAATATATTGTGTATTCACAACCATCTAGCAGTGTATTAACCTA
1 TTTCTGGCAGCTCTTATCTACAAATATGTTGTGTATTCACAACCATCTGGCAGCGTATTAACCTA
* *
75723220 CAACACTAGTGGTTCATCCACCTAC
66 AAACACTAGTGGTTCATCCACATAC
* * *
75723245 ATT-TGGCCAGCTCTTATCTACAAATATGTTGTGCATTCACAACCATCTGGTAGCGTATTAACCT
1 TTTCTGG-CAGCTCTTATCTACAAATATGTTGTGTATTCACAACCATCTGGCAGCGTATTAACCT
75723309 GTAACTTTTG
Statistics
Matches: 135, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
89 3 0.02
90 132 0.98
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.34
Consensus pattern (90 bp):
TTTCTGGCAGCTCTTATCTACAAATATGTTGTGTATTCACAACCATCTGGCAGCGTATTAACCTA
AAACACTAGTGGTTCATCCACATAC
Found at i:75723481 original size:24 final size:24
Alignment explanation
Indices: 75723441--75723490 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
75723431 AAAGCATGTG
75723441 TTGAGAATCTTTAATTATTTGATA
1 TTGAGAATCTTTAATTATTTGATA
* *
75723465 TTGAGAATTTTTTATTATTTGATA
1 TTGAGAATCTTTAATTATTTGATA
75723489 TT
1 TT
75723491 AGTAAATAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.30, C:0.02, G:0.12, T:0.56
Consensus pattern (24 bp):
TTGAGAATCTTTAATTATTTGATA
Found at i:75741481 original size:18 final size:19
Alignment explanation
Indices: 75741424--75741490 Score: 73
Period size: 20 Copynumber: 3.5 Consensus size: 19
75741414 CACTCTCAAT
*
75741424 CATATAAACAGTAACTCATC
1 CATAT-AACAGTAATTCATC
* *
75741444 CGTATAAACAGTACTTCATC
1 CATAT-AACAGTAATTCATC
*
75741464 CCTATAACAG-AATTCATC
1 CATATAACAGTAATTCATC
75741482 CATATAACA
1 CATATAACA
75741491 CATAGCTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
18 15 0.37
19 5 0.12
20 21 0.51
ACGTcount: A:0.42, C:0.25, G:0.06, T:0.27
Consensus pattern (19 bp):
CATATAACAGTAATTCATC
Found at i:75744289 original size:48 final size:48
Alignment explanation
Indices: 75744139--75744277 Score: 163
Period size: 48 Copynumber: 2.9 Consensus size: 48
75744129 AGTGATTTTG
*
75744139 TATAAGACCATGTTTGGGACATGGCATCGGCATC-AGTATGAGATCCCA
1 TATAAGACCATGTCTGGGACATGGCATCGGCATCGA-TATGAGATCCCA
* * * * * * *
75744187 TGTAAGACCATATCTGGGATATGGCATTGGCATCGATGTGAGGTCCCG
1 TATAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGATCCCA
* * *
75744235 TATAAGACCATGTCCGAGACATGGCATCGGTATCGATATGAGA
1 TATAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGA
75744278 CTTCATATAA
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
48 72 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
TATAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGATCCCA
Found at i:75749748 original size:40 final size:40
Alignment explanation
Indices: 75749686--75750006 Score: 430
Period size: 40 Copynumber: 8.1 Consensus size: 40
75749676 AGGTCTCGAC
75749686 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * *
75749725 GATGTACCCGGGTTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
75749765 GATGTATCCGGGCTAACTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
75749805 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
75749845 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
75749885 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
75749925 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * *
75749965 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
75750005 GA
1 GA
75750007 CGTGTATTCG
Statistics
Matches: 249, Mismatches: 30, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
39 5 0.02
40 242 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:75752323 original size:54 final size:56
Alignment explanation
Indices: 75752217--75752370 Score: 150
Period size: 56 Copynumber: 2.8 Consensus size: 56
75752207 AACATAGCAT
* * * * * *
75752217 GCCTCTCAACAGGGCTACCTAAAAACACCCAGACCTAGCATGCATCATATAA-T-CAC
1 GCCTCTCAACAGGGCTA-C-ACAAACTCCCGGACCTAGCATGTACCACATAATTACAC
* ** * * *
75752273 GCCTCTTAATGGGGCTACACAAACTCTCGGACCTAGCGTGTACCACATAATTACAT
1 GCCTCTCAACAGGGCTACACAAACTCCCGGACCTAGCATGTACCACATAATTACAC
* *
75752329 GCCTCTCGACAGGGCTACACAAGCTCCCGGACCTAGCATGTA
1 GCCTCTCAACAGGGCTACACAAACTCCCGGACCTAGCATGTA
75752371 TCATGCCATC
Statistics
Matches: 77, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
54 24 0.31
55 2 0.03
56 51 0.66
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.20
Consensus pattern (56 bp):
GCCTCTCAACAGGGCTACACAAACTCCCGGACCTAGCATGTACCACATAATTACAC
Found at i:75754602 original size:47 final size:47
Alignment explanation
Indices: 75754550--75754763 Score: 320
Period size: 47 Copynumber: 4.6 Consensus size: 47
75754540 GATAATTGTG
* * * *
75754550 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
75754597 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
75754644 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * * *
75754691 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
75754738 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
75754764 TCCCGAAGAG
Statistics
Matches: 151, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 151 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:75754674 original size:94 final size:94
Alignment explanation
Indices: 75754550--75754763 Score: 356
Period size: 94 Copynumber: 2.3 Consensus size: 94
75754540 GATAATTGTG
* *
75754550 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
75754615 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGACAAGGCCGAATGGCCAACGTGATGA
75754644 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * *
75754709 GTGACAGGGCCGAGTGGCCAACGTGATGG
66 GTGACAAGGCCGAATGGCCAACGTGATGA
*
75754738 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
75754764 TCCCGAAGAG
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 112 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGACAAGGCCGAATGGCCAACGTGATGA
Found at i:75758749 original size:29 final size:29
Alignment explanation
Indices: 75758707--75758765 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
75758697 TGTTGTGTTC
75758707 TAGAATTCCAAGGTAGTTGGGAAAAGAAT
1 TAGAATTCCAAGGTAGTTGGGAAAAGAAT
75758736 TAGAATTCCAAGGTAGTTGGGAAAAGAAT
1 TAGAATTCCAAGGTAGTTGGGAAAAGAAT
75758765 T
1 T
75758766 TACCTGTGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.07, G:0.27, T:0.25
Consensus pattern (29 bp):
TAGAATTCCAAGGTAGTTGGGAAAAGAAT
Found at i:75760730 original size:19 final size:19
Alignment explanation
Indices: 75760702--75760752 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
75760692 GAGCTTGTAG
*
75760702 ACACGGGCGTGTCAAGGGC
1 ACACGGGCGTGTCAAAGGC
*
75760721 ACATGGGCGTGTCAAAGGC
1 ACACGGGCGTGTCAAAGGC
*
75760740 ACACGGGTGTGTC
1 ACACGGGCGTGTC
75760753 CTTGTGTCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.22, C:0.24, G:0.39, T:0.16
Consensus pattern (19 bp):
ACACGGGCGTGTCAAAGGC
Found at i:75769652 original size:17 final size:17
Alignment explanation
Indices: 75769632--75769675 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
75769622 TCATAAAAGT
*
75769632 GTTCATCAAACCTTAGA
1 GTTCACCAAACCTTAGA
75769649 GTTCACCAAACCTTAGA
1 GTTCACCAAACCTTAGA
75769666 GTTCACCAAA
1 GTTCACCAAA
75769676 TGGAAAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.36, C:0.27, G:0.11, T:0.25
Consensus pattern (17 bp):
GTTCACCAAACCTTAGA
Found at i:75772871 original size:21 final size:21
Alignment explanation
Indices: 75772834--75772873 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
75772824 TCAATCTCTA
*
75772834 TGGGATCTTCTTCTTCTTCTT
1 TGGGATCCTCTTCTTCTTCTT
75772855 TGGGATCCTCATT-TTCTTC
1 TGGGATCCTC-TTCTTCTTC
75772874 AACTCGTTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.07, C:0.25, G:0.15, T:0.53
Consensus pattern (21 bp):
TGGGATCCTCTTCTTCTTCTT
Found at i:75774537 original size:30 final size:30
Alignment explanation
Indices: 75774480--75774538 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
75774470 ATTATTTAAA
* *
75774480 AATATTTACAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAGAGACACCAAATTTTT
*
75774510 AATATTTTCAAAAAGAG-CAACCAAATTTT
1 AATATTTACAAAAAGAGAC-ACCAAATTTT
75774539 GAAAATAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.47, C:0.12, G:0.07, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACACCAAATTTTT
Found at i:75775764 original size:27 final size:26
Alignment explanation
Indices: 75775716--75775767 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
75775706 GCGAGGCTGT
*
75775716 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
75775742 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
75775768 TTGCAGCGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:75776397 original size:27 final size:27
Alignment explanation
Indices: 75776367--75776473 Score: 160
Period size: 27 Copynumber: 4.0 Consensus size: 27
75776357 ATAGTCATTT
* *
75776367 TACCCTACAGGGCTATTTCAATAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
*
75776394 TACCCTACAGGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* **
75776421 TACCCTATAGGGGTATTTTGGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
75776448 TACCCTACAGGGGTATTTCAGTAATT
1 TACCCTACAGGGGTATTTCAGTAATT
75776474 TTGTCTATCG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCAGTAATTC
Found at i:75776498 original size:54 final size:54
Alignment explanation
Indices: 75776388--75776503 Score: 135
Period size: 54 Copynumber: 2.1 Consensus size: 54
75776378 GCTATTTCAA
* ****
75776388 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTAAAACGG
*** *
75776442 TAATTCTACCCTACAGGGGTATTTCAGTAATT-TTGTCTATCGAGGGTAAAACGG
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAG-GGGTAAAACGG
75776496 TAATTCTA
1 TAATTCTA
75776504 TAAACCGAGG
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 6 0.12
54 46 0.88
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (54 bp):
TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTAAAACGG
Found at i:75776653 original size:27 final size:27
Alignment explanation
Indices: 75776494--75776662 Score: 135
Period size: 27 Copynumber: 6.3 Consensus size: 27
75776484 AGGGTAAAAC
* * * *
75776494 GGTAATTCTATAAACCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* * * *
75776521 GGTAATTTTACAAGTAGAGAGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
75776548 AGTAATTTTACAAATCGAAGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
75776575 AGTAATTTTACAAA-CTAGGG-ATTTTT
1 GGTAATTTTACAAATCGAGGGTA-TTTT
** * *
75776601 GGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
75776628 GGTAATTTTACAAATCGGGGGCATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
*
75776655 GGTGATTT
1 GGTAATTT
75776663 GGTAAACTAA
Statistics
Matches: 112, Mismatches: 27, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
25 1 0.01
26 18 0.16
27 92 0.82
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:75776678 original size:53 final size:53
Alignment explanation
Indices: 75776576--75776678 Score: 120
Period size: 54 Copynumber: 1.9 Consensus size: 53
75776566 AGGTATTTCA
* * *
75776576 GTAATTTTACAAACTAGGGATTTTTGGTAATTTTGTAAACCAAGGGTATTTTG
1 GTAATTTTACAAACGAGGGATTTTTGGTAATTTGGTAAACCAAGAGTATTTTG
* * *
75776629 GTAATTTTACAAATCGGGGGCA-TTTTGGTGATTTGGTAAACTAA-AGTATT
1 GTAATTTTACAAA-CGAGGG-ATTTTTGGTAATTTGGTAAACCAAGAGTATT
75776679 CTAAACAGGG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
53 18 0.43
54 23 0.55
55 1 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (53 bp):
GTAATTTTACAAACGAGGGATTTTTGGTAATTTGGTAAACCAAGAGTATTTTG
Found at i:75783374 original size:27 final size:26
Alignment explanation
Indices: 75783326--75783406 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 26
75783316 GCGAGGCTGC
*
75783326 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
75783353 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
75783379 CAAATATATATGTGGCGAAGCCACCAGA
1 C--AGATAT-TGTGACGAAGCCACCAGA
75783407 TTGCAGCGAG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.05
27 21 0.48
28 5 0.11
29 16 0.36
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:75783428 original size:69 final size:67
Alignment explanation
Indices: 75783353--75783492 Score: 208
Period size: 67 Copynumber: 2.1 Consensus size: 67
75783343 TCACCAGATA
* * * *
75783353 CAGATATTGTGGCTAGGCCACCAGAACAAATATATATGTGGCGAAGCCACCAGATTGCAGCGAGG
1 CAGATATTGTGACGAAGCCACCAGAAC--AGATATATGTGGCGAAGCCACCAGATTGCAGCGAGG
75783418 CTGC
64 CTGC
* *
75783422 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
75783487 GC
66 GC
75783489 CAGA
1 CAGA
75783493 ACGCTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
67 42 0.65
69 23 0.35
ACGTcount: A:0.31, C:0.23, G:0.29, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:75783470 original size:27 final size:26
Alignment explanation
Indices: 75783422--75783473 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
75783412 GCGAGGCTGC
*
75783422 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
75783448 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
75783474 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:75784162 original size:27 final size:27
Alignment explanation
Indices: 75784132--75784239 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 27
75784122 ATCGGTAGTC
* * *
75784132 CTACCTTATAGGGCTATTTCAATAATT
1 CTACCCTATAGGGGTATTTCAGTAATT
* ** *
75784159 CTACCCTACAGAAGTATTTCGGTAATT
1 CTACCCTATAGGGGTATTTCAGTAATT
* *
75784186 CTATCCTATAGGGGTATTTCGGTAATT
1 CTACCCTATAGGGGTATTTCAGTAATT
*
75784213 CTACCCTAGAGGGGTATTTCAGTAATT
1 CTACCCTATAGGGGTATTTCAGTAATT
75784240 TTATCAATCG
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
CTACCCTATAGGGGTATTTCAGTAATT
Found at i:75784230 original size:54 final size:54
Alignment explanation
Indices: 75784138--75784244 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
75784128 AGTCCTACCT
*
75784138 TATAGGGCTATTTCAATAATTCTACCCTACAGAAGTATTTCGGTAATTCTATCC
1 TATAGGGCTATTTCAATAATTCTACCCTACAGAAGTATTTCAGTAATTCTATCC
* ** * ** *
75784192 TATAGGGGTATTTCGGTAATTCTACCCTAGAGGGGTATTTCAGTAATTTTATC
1 TATAGGGCTATTTCAATAATTCTACCCTACAGAAGTATTTCAGTAATTCTATC
75784245 AATCGAGGAT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (54 bp):
TATAGGGCTATTTCAATAATTCTACCCTACAGAAGTATTTCAGTAATTCTATCC
Found at i:75784415 original size:54 final size:54
Alignment explanation
Indices: 75784260--75784435 Score: 176
Period size: 54 Copynumber: 3.3 Consensus size: 54
75784250 AGGATAAAAC
* * * * * **
75784260 GGTAATTCTGTAAATCGAGGATACTTTGGTAATTTTACAAGTCAAGATTATTTT
1 GGTAATTTTGTAAATCAAGGATATTTTGGTAATTTTACAAATCAGGGGTATTTT
* ** * * **
75784314 AGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTGTAAATCAAGGATATTTTGGTAATTTTACAAATC-AGGGGTATTTT
75784368 GGTAATTTTGTAAA-CTAAGGATATTTTGGTAATTTTACAAATCAGGGGTATTTT
1 GGTAATTTTGTAAATC-AAGGATATTTTGGTAATTTTACAAATCAGGGGTATTTT
* *
75784422 GGTGATTTGGTAAA
1 GGTAATTTTGTAAA
75784436 CTAAAGTATT
Statistics
Matches: 98, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
53 2 0.02
54 95 0.97
55 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.40
Consensus pattern (54 bp):
GGTAATTTTGTAAATCAAGGATATTTTGGTAATTTTACAAATCAGGGGTATTTT
Found at i:75784422 original size:27 final size:27
Alignment explanation
Indices: 75784284--75784429 Score: 136
Period size: 27 Copynumber: 5.4 Consensus size: 27
75784274 TCGAGGATAC
* * **
75784284 TTTGGTAATTTTACAAGTCAAGATTAT
1 TTTGGTAATTTTACAAATCAGGGGTAT
*
75784311 TTTAGTAATTTTACAAATC-GAGGGTAT
1 TTTGGTAATTTTACAAATCAG-GGGTAT
**
75784338 TTCAGTAATTTTACAAA-CTAGGGGTAT
1 TTTGGTAATTTTACAAATC-AGGGGTAT
** * *
75784365 TTTGGTAATTTTGTAAA-CTAAGGATAT
1 TTTGGTAATTTTACAAATC-AGGGGTAT
75784392 TTTGGTAATTTTACAAATCAGGGGTAT
1 TTTGGTAATTTTACAAATCAGGGGTAT
*
75784419 TTTGGTGATTT
1 TTTGGTAATTT
75784430 GGTAAACTAA
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
26 1 0.01
27 95 0.97
28 2 0.02
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (27 bp):
TTTGGTAATTTTACAAATCAGGGGTAT
Found at i:75787687 original size:27 final size:27
Alignment explanation
Indices: 75787643--75787695 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
75787633 GAACCTGGTT
*
75787643 TGTAAAATCACCAGAATACCCTTGTAG
1 TGTAAAATCACCAGAATACCCCTGTAG
*
75787670 TGTAAAATGACC-GTAATACCCCTGTA
1 TGTAAAATCACCAG-AATACCCCTGTA
75787696 TGGTAGAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (27 bp):
TGTAAAATCACCAGAATACCCCTGTAG
Found at i:75790262 original size:37 final size:37
Alignment explanation
Indices: 75790200--75790374 Score: 287
Period size: 37 Copynumber: 4.7 Consensus size: 37
75790190 GCTCAGACGA
* * *
75790200 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
75790237 AATCTCCACACGTAGTCATCCGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
75790274 AATCTCCACACGTAGTCATCAGGTCTTACCCGAACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
75790311 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
75790348 AATCTCCACACGTAGTCATCGGGTCTT
1 AATCTCCACACGTAGTCATCGGGTCTT
75790375 TAGAGCTCGG
Statistics
Matches: 129, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 129 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:75790596 original size:22 final size:22
Alignment explanation
Indices: 75790568--75790641 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
75790558 TTTCACATTC
75790568 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** * *
75790590 ATCACATATACACTTTCA--CATT
1 ATCACATCGGC-CATT-AGGCCTT
75790612 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
75790635 ATCACAT
1 ATCACAT
75790642 ATATACACTT
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:75790762 original size:49 final size:49
Alignment explanation
Indices: 75790493--75791191 Score: 1074
Period size: 49 Copynumber: 14.6 Consensus size: 49
75790483 CCCTTCGGGA
* * * * *
75790493 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75790540 CCTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75790587 CTTATCAC----ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75790632 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75790679 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75790726 CTTATCACATATATATACACTTTCACATTCACCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75790775 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75790824 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75790873 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75790922 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75790969 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75791020 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75791069 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75791118 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75791165 CTTATCAC--ATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
75791192 TATTCAAATA
Statistics
Matches: 619, Mismatches: 23, Indels: 20
0.94 0.03 0.03
Matches are distributed among these distances:
45 45 0.07
46 1 0.00
47 245 0.40
49 284 0.46
51 44 0.07
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75794823 original size:27 final size:27
Alignment explanation
Indices: 75794760--75794812 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
75794750 GATCCTTGTT
* *
75794760 TGTAAAATCACCGAAATACCCTTGTAA
1 TGTAAAATGACCGAAATACCCCTGTAA
*
75794787 TGTAAAATGACCGTAATACCCCTGTA
1 TGTAAAATGACCGAAATACCCCTGTA
75794813 TGGTAGAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCCTGTAA
Found at i:75802233 original size:27 final size:27
Alignment explanation
Indices: 75802168--75802234 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 27
75802158 ATTAATCAAA
* *
75802168 AATTATTATA-AAATTAAGTAAAATTC
1 AATTATTTTATAATTTAAGTAAAATTC
* * *
75802194 AA-CATGTTAATAATTTAAGTAAAATTT
1 AATTAT-TTTATAATTTAAGTAAAATTC
75802221 AATTATTTTATAAT
1 AATTATTTTATAAT
75802235 AATTAAATAT
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
25 2 0.06
26 4 0.13
27 23 0.74
28 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.43
Consensus pattern (27 bp):
AATTATTTTATAATTTAAGTAAAATTC
Found at i:75808486 original size:47 final size:46
Alignment explanation
Indices: 75808421--75808776 Score: 209
Period size: 47 Copynumber: 7.8 Consensus size: 46
75808411 TTTGTGTGCT
75808421 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG--ACATTATGAGAGCC
* * * ** * *
75808467 AGTGTAAGACCATGTCTGGGATATAGCATTGG-CATTGAAAAAAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACATT---ATGAGAGCC
* * *
75808515 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGTTACATGAT--GTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG--ACATTATGAGAGCC
*
75808559 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGTAT-AGAG--
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACA-TTATGAGAGCC
* * * *
75808602 -GTGT-------T-TTTGGGATATGGCATCAGCACGGATATATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGAC--AT-TATGAGAGCC
* * * * *
75808643 AGTGTAAGACCATGTCTGCGACATGGCATCGGCCTTGATTTTGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGAC---ATTATGAGAGCC
75808692 AGTGTAAGACCATGTCTGGGACATGGCATC-GAC-TTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACATT-AT-GA-GAGCC
75808739 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACATTAT
75808777 ACCAAATGTT
Statistics
Matches: 239, Mismatches: 36, Indels: 69
0.69 0.10 0.20
Matches are distributed among these distances:
34 14 0.06
35 2 0.01
36 1 0.00
38 4 0.02
39 4 0.02
42 8 0.03
43 2 0.01
44 14 0.06
45 21 0.09
46 25 0.10
47 62 0.26
48 25 0.10
49 41 0.17
50 16 0.07
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGACATTATGAGAGCC
Found at i:75810451 original size:20 final size:21
Alignment explanation
Indices: 75810414--75810453 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
75810404 ATGACTAAGC
75810414 CTATCTTCAGTTTTACTTGAT
1 CTATCTTCAGTTTTACTTGAT
75810435 CTAT-TTCA-TTTTCACTTGA
1 CTATCTTCAGTTTT-ACTTGA
75810454 ACTTGGAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 10 0.56
21 4 0.22
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (21 bp):
CTATCTTCAGTTTTACTTGAT
Found at i:75812295 original size:22 final size:22
Alignment explanation
Indices: 75812270--75812311 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
75812260 TTACTTTTAA
**
75812270 AATATACTAATTTAACTTATCG
1 AATATACTAATGAAACTTATCG
*
75812292 AATATATTAATGAAACTTAT
1 AATATACTAATGAAACTTAT
75812312 AATTGAGTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (22 bp):
AATATACTAATGAAACTTATCG
Found at i:75812419 original size:16 final size:17
Alignment explanation
Indices: 75812398--75812439 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
75812388 TGTGGTTCAC
*
75812398 ATAAATAATAA-TAATA
1 ATAAATAATAATTAACA
*
75812414 ATAAATAA-AATTTACA
1 ATAAATAATAATTAACA
75812430 ATAAATAATA
1 ATAAATAATA
75812440 TAAAAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 19 0.86
17 1 0.05
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (17 bp):
ATAAATAATAATTAACA
Found at i:75814736 original size:40 final size:40
Alignment explanation
Indices: 75814680--75814814 Score: 234
Period size: 40 Copynumber: 3.4 Consensus size: 40
75814670 CGGATGTAAC
* *
75814680 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
75814720 AACCCGCACGACTGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
75814760 AACCCGCACGAATGCCTTCGAGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
75814800 AACCCGCACGAATGC
1 AACCCGCACGAATGC
75814815 TATGCACATA
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.21
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:75817763 original size:15 final size:15
Alignment explanation
Indices: 75817727--75817765 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
75817717 TTTATATATT
75817727 ATTA-ATATATTAAA
1 ATTATATATATTAAA
*
75817741 ATTTATATATATTTAA
1 A-TTATATATATTAAA
75817757 ATTATATAT
1 ATTATATAT
75817766 TGAAATGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 11 0.50
16 10 0.45
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATTATATATATTAAA
Found at i:75817764 original size:17 final size:16
Alignment explanation
Indices: 75817731--75817765 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
75817721 TATATTATTA
75817731 ATATATTAAAATTTAT
1 ATATATTAAAATTTAT
*
75817747 ATATATTTAAA-TTAT
1 ATATATTAAAATTTAT
75817762 ATAT
1 ATAT
75817766 TGAAATGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATATTAAAATTTAT
Found at i:75817969 original size:21 final size:21
Alignment explanation
Indices: 75817929--75817967 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
75817919 AAATCATGGA
75817929 TAAATCCAAGCGACTCTTTCT
1 TAAATCCAAGCGACTCTTTCT
75817950 TAAATCCAAGCGA-TCTTT
1 TAAATCCAAGCGACTCTTT
75817968 TCGTAGGCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (21 bp):
TAAATCCAAGCGACTCTTTCT
Found at i:75819437 original size:16 final size:16
Alignment explanation
Indices: 75819416--75819466 Score: 84
Period size: 16 Copynumber: 3.2 Consensus size: 16
75819406 AAGAAAGAAC
*
75819416 AAATACACTAGTAAAT
1 AAATACGCTAGTAAAT
75819432 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
*
75819448 AAACACGCTAGTAAAT
1 AAATACGCTAGTAAAT
75819464 AAA
1 AAA
75819467 ATACTAGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.22
Consensus pattern (16 bp):
AAATACGCTAGTAAAT
Found at i:75819803 original size:18 final size:19
Alignment explanation
Indices: 75819780--75819816 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
75819770 AAATACTAAG
75819780 TATATCTAAGAGA-ATCTA
1 TATATCTAAGAGATATCTA
*
75819798 TATATCTAATAGATATCTA
1 TATATCTAAGAGATATCTA
75819817 ATAAGTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (19 bp):
TATATCTAAGAGATATCTA
Found at i:75821135 original size:28 final size:28
Alignment explanation
Indices: 75821095--75821152 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
75821085 CGATACAGAA
75821095 GAAAGAGTTCAGGAATTACTAAATATGG
1 GAAAGAGTTCAGGAATTACTAAATATGG
75821123 GAAAGAGTTCAGGAATTACTAAATATGG
1 GAAAGAGTTCAGGAATTACTAAATATGG
75821151 GA
1 GA
75821153 CTCTAGGGGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.43, C:0.07, G:0.26, T:0.24
Consensus pattern (28 bp):
GAAAGAGTTCAGGAATTACTAAATATGG
Found at i:75829925 original size:13 final size:13
Alignment explanation
Indices: 75829907--75829932 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75829897 GTGATACCAA
75829907 TATTATTATTATT
1 TATTATTATTATT
75829920 TATTATTATTATT
1 TATTATTATTATT
75829933 ATGTTTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TATTATTATTATT
Found at i:75830745 original size:13 final size:14
Alignment explanation
Indices: 75830727--75830758 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
75830717 TAATTTTTCC
75830727 TATTTTTAAT-TTT
1 TATTTTTAATATTT
75830740 TATTTTTAATATTT
1 TATTTTTAATATTT
75830754 TATTT
1 TATTT
75830759 ATTTAAACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (14 bp):
TATTTTTAATATTT
Found at i:75833805 original size:43 final size:43
Alignment explanation
Indices: 75833648--75833807 Score: 130
Period size: 43 Copynumber: 3.7 Consensus size: 43
75833638 TATGTGTTTT
* * * * *
75833648 CGTGTAAGACCACGTCTGGGATGTTGGAATTGACT-TATGATTTA
1 CGTGTAAGACCACGTCTAGGACGTTGGCATT-AATATTTGA-TTA
* ** ** *
75833692 CGTGTAAGATCACGTCTAGGACGTTGTTA-TCGTATTTGATTT
1 CGTGTAAGACCACGTCTAGGACGTTGGCATTAATATTTGATTA
*
75833734 CGTGTAAGACC-CTGTCTAGGATAG-TGGCATTAATATTTGATTA
1 CGTGTAAGACCAC-GTCTAGGA-CGTTGGCATTAATATTTGATTA
* *
75833777 CATGTAAGACCACGTCTGGGACGTTGGCATT
1 CGTGTAAGACCACGTCTAGGACGTTGGCATT
75833808 GTACAAGCTT
Statistics
Matches: 91, Mismatches: 19, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
41 1 0.01
42 25 0.27
43 40 0.44
44 25 0.27
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTAGGACGTTGGCATTAATATTTGATTA
Found at i:75838617 original size:27 final size:26
Alignment explanation
Indices: 75838587--75838648 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
75838577 AGATAATTAA
75838587 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
75838614 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
75838641 AATAAAAT
1 AATAAAAT
75838649 GGAGTCTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 9 0.31
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:75842910 original size:40 final size:40
Alignment explanation
Indices: 75842855--75843126 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
75842845 ATTTGAATAC
*
75842855 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
75842895 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
*
75842935 ATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGACATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATAT
75842977 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
75843017 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
** * * *
75843057 ATCCGGGCTAAGATTCGAAGACATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
75843097 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
75843127 TTGTGGTTAT
Statistics
Matches: 211, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
40 172 0.82
42 39 0.18
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
Found at i:75843087 original size:122 final size:122
Alignment explanation
Indices: 75842847--75843126 Score: 431
Period size: 122 Copynumber: 2.3 Consensus size: 122
75842837 GCATGAGCAT
*
75842847 TTGA-ATACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
* * * *
75842911 GAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAG
66 GAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCAAAGACATTCGTGCGAG
*
75842968 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
** *
75843033 GAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGATTCGAAGACATTCGTGCGAG
66 GAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCAAAGACATTCGTGCGAG
* * *
75843090 TTG-C-TATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
75843127 TTGTGGTTAT
Statistics
Matches: 146, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
120 30 0.21
121 5 0.03
122 111 0.76
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (122 bp):
TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
GAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCAAAGACATTCGTGCGAG
Found at i:75845820 original size:10 final size:10
Alignment explanation
Indices: 75845761--75845827 Score: 57
Period size: 10 Copynumber: 6.7 Consensus size: 10
75845751 TTTTATTAAT
*
75845761 TAAAATAGAA
1 TAAAATAAAA
75845771 T-AAAT-AAA
1 TAAAATAAAA
*
75845779 TAATAAATAAAT
1 T-A-AAATAAAA
75845791 TAAAATAAAA
1 TAAAATAAAA
*
75845801 CAAAATAAAA
1 TAAAATAAAA
*
75845811 TGAAATAAAA
1 TAAAATAAAA
*
75845821 TGAAATA
1 TAAAATA
75845828 GAAAAAGAGA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
8 3 0.06
9 4 0.09
10 32 0.68
11 5 0.11
12 3 0.06
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.22
Consensus pattern (10 bp):
TAAAATAAAA
Found at i:75851448 original size:17 final size:18
Alignment explanation
Indices: 75851428--75851461 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
75851418 AAGTGAATTG
75851428 AAATTGCA-AAATTAAAT
1 AAATTGCAGAAATTAAAT
75851445 AAATTGCAGAAATTAAA
1 AAATTGCAGAAATTAAA
75851462 ATGAGGAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (18 bp):
AAATTGCAGAAATTAAAT
Found at i:75852239 original size:27 final size:26
Alignment explanation
Indices: 75852209--75852270 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
75852199 AGATAATTAA
75852209 AATAAAATCCTAA-AGTTAAATAATCCT
1 AATAAAATCCTAATA-TT-AATAATCCT
* * *
75852236 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAATATTAATAATCCT
75852263 AATAAAAT
1 AATAAAAT
75852271 GGAGTCTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 8 0.28
29 1 0.03
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.37
Consensus pattern (26 bp):
AATAAAATCCTAATATTAATAATCCT
Found at i:75855922 original size:43 final size:42
Alignment explanation
Indices: 75855786--75855944 Score: 157
Period size: 43 Copynumber: 3.7 Consensus size: 42
75855776 TATGTGTTTT
* *
75855786 CATGTAAGACCACTTCTGGGACGTTGGCATCGACT-TATT-ATTTA
1 CATGTAAGACCACGTCTAGGACGTTGGCATC-A-TAT-TTGA-TTA
*
75855830 -AGTGTAAGACCACGTCTAGGACGTTGGCATCATATTTGATTT
1 CA-TGTAAGACCACGTCTAGGACGTTGGCATCATATTTGATTA
*
75855872 CATGTAAGACC-CTGTCTAGGACAG-TGGCATCGATATTTGCTTA
1 CATGTAAGACCAC-GTCTAGGAC-GTTGGCATC-ATATTTGATTA
* *
75855915 CATGTAAGACAACGTCTGGGACGTTGGCAT
1 CATGTAAGACCACGTCTAGGACGTTGGCAT
75855945 TGTACAAGCT
Statistics
Matches: 99, Mismatches: 7, Indels: 19
0.79 0.06 0.15
Matches are distributed among these distances:
41 1 0.01
42 31 0.31
43 39 0.39
44 28 0.28
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (42 bp):
CATGTAAGACCACGTCTAGGACGTTGGCATCATATTTGATTA
Found at i:75855941 original size:85 final size:85
Alignment explanation
Indices: 75855783--75855944 Score: 208
Period size: 85 Copynumber: 1.9 Consensus size: 85
75855773 CGATATGTGT
* *
75855783 TTTCATGTAAGACCACTTCTGGGACGTTGGCATCGACTTATTATTTAAGTGTAAGACCACGTCTA
1 TTTCATGTAAGACCACTTCTAGGACGTTGGCATCGAC-TATTATTTAAGTGTAAGACAACGTCTA
75855848 GGACGTTGGCATCATATTTGA
65 GGACGTTGGCATCATATTTGA
75855869 TTTCATGTAAGACC-CTGTCTAGGACAG-TGGCATCGA-TATT-TGCTTACA-TGTAAGACAACG
1 TTTCATGTAAGACCACT-TCTAGGAC-GTTGGCATCGACTATTAT--TTA-AGTGTAAGACAACG
*
75855929 TCTGGGACGTTGGCAT
61 TCTAGGACGTTGGCAT
75855945 TGTACAAGCT
Statistics
Matches: 68, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
83 1 0.01
84 4 0.06
85 31 0.46
86 31 0.46
87 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.32
Consensus pattern (85 bp):
TTTCATGTAAGACCACTTCTAGGACGTTGGCATCGACTATTATTTAAGTGTAAGACAACGTCTAG
GACGTTGGCATCATATTTGA
Found at i:75856111 original size:18 final size:18
Alignment explanation
Indices: 75856088--75856123 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
75856078 AAAAGGTTAG
75856088 TATATG-TATAAGTGATGA
1 TATATGTTATAAGT-ATGA
75856106 TATATGTTATAAGTATGA
1 TATATGTTATAAGTATGA
75856124 GAAAATATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (18 bp):
TATATGTTATAAGTATGA
Found at i:75857704 original size:52 final size:52
Alignment explanation
Indices: 75857605--75857740 Score: 166
Period size: 52 Copynumber: 2.6 Consensus size: 52
75857595 TATAAACAGA
* *
75857605 TATGGTCTTATA-TGGAATCACATTATCACATCACACTAACGCTATAGCCCAAC
1 TATGGTCTTATACTGGAA-CACA-TATCACATCACACCAACGCCATAGCCCAAC
* ** *
75857658 TATGGTCTTATACTGGAACACGTATCACATTGCACCAATGCCATAGCCCAAC
1 TATGGTCTTATACTGGAACACATATCACATCACACCAACGCCATAGCCCAAC
* * *
75857710 TATGGTATTATACGGGCACACATATCACATC
1 TATGGTCTTATACTGGAACACATATCACATC
75857741 TTTTCCGTCA
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
52 51 0.72
53 15 0.21
54 5 0.07
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.27
Consensus pattern (52 bp):
TATGGTCTTATACTGGAACACATATCACATCACACCAACGCCATAGCCCAAC
Found at i:75865217 original size:53 final size:51
Alignment explanation
Indices: 75865156--75865290 Score: 162
Period size: 52 Copynumber: 2.6 Consensus size: 51
75865146 TCTCTCAGAC
*
75865156 ATGGTCTTATACGGAATCACATTATCACATCACACCGACACCATAGCCCAACT
1 ATGGTCTTATACGGAA-CACA-TATCACATCACACCAACACCATAGCCCAACT
* ** ** *
75865209 ATGGTCTTATACGGGAACACGTATCACATTGCACCAATTCCATAGCCCAGCT
1 ATGGTCTTATAC-GGAACACATATCACATCACACCAACACCATAGCCCAACT
*
75865261 ATGGTCTTATACGGAAGCACATACCACATC
1 ATGGTCTTATACGGAA-CACATATCACATC
75865291 TTTTCCGTCA
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
51 4 0.06
52 47 0.67
53 15 0.21
54 4 0.06
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.24
Consensus pattern (51 bp):
ATGGTCTTATACGGAACACATATCACATCACACCAACACCATAGCCCAACT
Found at i:75870620 original size:29 final size:28
Alignment explanation
Indices: 75870575--75870629 Score: 92
Period size: 29 Copynumber: 1.9 Consensus size: 28
75870565 AATTGATTGG
75870575 TGTATTTTTTTACGATTGATGTATTTGA
1 TGTATTTTTTTACGATTGATGTATTTGA
*
75870603 TGTATTTTTTTTATGATTGATGTATTT
1 TGTA-TTTTTTTACGATTGATGTATTT
75870630 TTCTCCATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.20, C:0.02, G:0.16, T:0.62
Consensus pattern (28 bp):
TGTATTTTTTTACGATTGATGTATTTGA
Found at i:75873965 original size:80 final size:78
Alignment explanation
Indices: 75873880--75874051 Score: 204
Period size: 79 Copynumber: 2.2 Consensus size: 78
75873870 GGACTAAGAT
*
75873880 CCGAAGGCATTTGTGCGAG-A-TACAAGTTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATAC
1 CCGAAGGCATTTGTGCGAGCATTA-AA--TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATAC
* *
75873943 TAAATCCGGGTTAAGTC
62 TAAAACCGGGCTAAGTC
* * * * *
75873960 TCGAAGGCATTCGTGCGAGTCATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAG-CATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
75874025 AACCGGGCTATGTC
65 AACCGGGCTAAGTC
75874039 CCGAAGGCATTTG
1 CCGAAGGCATTTG
75874052 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
79 37 0.47
80 36 0.46
82 3 0.04
83 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGCATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
ACCGGGCTAAGTC
Found at i:75874040 original size:39 final size:39
Alignment explanation
Indices: 75873827--75874049 Score: 198
Period size: 40 Copynumber: 5.6 Consensus size: 39
75873817 TTGAATGCTG
* * * * * *
75873827 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
75873867 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
75873907 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
* * *
75873947 TCCGGGTTAAGTCTCGAAGGCATTCGTGCGAGTCATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
75873987 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
75874026 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
75874050 TGAACGAGGA
Statistics
Matches: 150, Mismatches: 26, Indels: 15
0.79 0.14 0.08
Matches are distributed among these distances:
39 37 0.25
40 103 0.69
41 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:75881806 original size:40 final size:39
Alignment explanation
Indices: 75881769--75881944 Score: 203
Period size: 39 Copynumber: 4.5 Consensus size: 39
75881759 ATATCCGGAC
*
75881769 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAGTTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAA-ATCCGGGT
* *
75881809 TAAGCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * *
75881848 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * * *
75881888 TAAGTCCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGC
1 TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
*
75881926 TATGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
75881945 AACGAGGAGC
Statistics
Matches: 118, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
38 23 0.19
39 51 0.43
40 44 0.37
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:75881962 original size:78 final size:79
Alignment explanation
Indices: 75881802--75881977 Score: 187
Period size: 78 Copynumber: 2.2 Consensus size: 79
75881792 AGATACAAGT
* * * *
75881802 TCCGGGTTAAGCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
75881867 TGCGAGTTATTAAA
66 AACGAGTGACTAAA
* * * *
75881881 TCCGGGTTAAGTCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
*
75881945 AACGAG-GAGCTATA
66 AACGAGTGA-CTAAA
*
75881959 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGT-CCGAAGG
75881978 TACGTGATTT
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
77 8 0.10
78 55 0.68
79 18 0.22
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
AACGAGTGACTAAA
Found at i:75889712 original size:39 final size:38
Alignment explanation
Indices: 75889537--75889755 Score: 146
Period size: 39 Copynumber: 5.6 Consensus size: 38
75889527 TTGAATGCTG
* * * *
75889537 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATAA-
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGT-ACTAAT
**
75889576 TCCGGACTAAGAT-CCGAA-GCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAG-TACTAA-T
* *
75889615 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGAATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAG--TACTAAT
* *
75889655 TCCGGGTTAAGTCTCGAAGGCATTCGTGCGAGTCATTAAT
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGT-ACTAAT
* *
75889695 TCC-GGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAG-TACTAAT
* * *
75889733 ACCGGGCTATGT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
75889756 TGAACGAGGA
Statistics
Matches: 146, Mismatches: 19, Indels: 31
0.74 0.10 0.16
Matches are distributed among these distances:
37 2 0.01
38 33 0.23
39 68 0.47
40 27 0.18
41 16 0.11
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (38 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTACTAAT
Found at i:75918968 original size:46 final size:46
Alignment explanation
Indices: 75918901--75919074 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
75918891 TGTAACCCGC
* *
75918901 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
75918947 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
75918997 -C-TCA-CGAACTC-GACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
75919039 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
75919075 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
44 2 0.02
45 6 0.06
46 73 0.70
47 6 0.06
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:75919020 original size:92 final size:93
Alignment explanation
Indices: 75918908--75919078 Score: 299
Period size: 92 Copynumber: 1.8 Consensus size: 93
75918898 CGCCCATAAG
* * *
75918908 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75918973 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
75919001 CGAACTC-GACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75919065 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75919079 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 67 0.91
93 7 0.09
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75930139 original size:23 final size:23
Alignment explanation
Indices: 75930109--75930154 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
75930099 CATCAATATA
75930109 ACTATTAGCAATTGTTGCAAGTT
1 ACTATTAGCAATTGTTGCAAGTT
75930132 ACTATTAGCAATTGTTGCAAGTT
1 ACTATTAGCAATTGTTGCAAGTT
75930155 TTCTTTGCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.39
Consensus pattern (23 bp):
ACTATTAGCAATTGTTGCAAGTT
Found at i:75931710 original size:29 final size:30
Alignment explanation
Indices: 75931646--75931711 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
75931636 TACAAACTCC
* *
75931646 ACTTAATTGCATTAATATAAGTAAATTATT
1 ACTTGATTGCATTAATATAAATAAATTATT
** *
75931676 TGTTGATTGTATTAATATAAAT-AATTATT
1 ACTTGATTGCATTAATATAAATAAATTATT
75931705 ACTTGAT
1 ACTTGAT
75931712 AGACATAATA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
29 12 0.41
30 17 0.59
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.47
Consensus pattern (30 bp):
ACTTGATTGCATTAATATAAATAAATTATT
Found at i:75933984 original size:20 final size:20
Alignment explanation
Indices: 75933959--75934001 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
75933949 ATCAGTATTC
75933959 TTATCCTAAATTTTAGGATT
1 TTATCCTAAATTTTAGGATT
* *
75933979 TTATCCTGAATTTTAGTATT
1 TTATCCTAAATTTTAGGATT
75933999 TTA
1 TTA
75934002 ATTTGGGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.53
Consensus pattern (20 bp):
TTATCCTAAATTTTAGGATT
Found at i:75934539 original size:15 final size:15
Alignment explanation
Indices: 75934519--75934549 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
75934509 TATATATTAG
*
75934519 ATAATATATGATAAA
1 ATAATATATAATAAA
75934534 ATAATATATAATAAA
1 ATAATATATAATAAA
75934549 A
1 A
75934550 CCCAGTAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (15 bp):
ATAATATATAATAAA
Found at i:75936534 original size:133 final size:133
Alignment explanation
Indices: 75936262--75936788 Score: 480
Period size: 132 Copynumber: 4.0 Consensus size: 133
75936252 GAGATCTGTT
* ** * * * * * * *
75936262 ATCTTCAGTCTGCTCCACTGCAACTTCAGGGATATAAGACTTGTGGCTTCAATCTGCTCCCCTAC
1 ATCTTCAGCCTGCTCCACTGCTGC-TCAAGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTAC
* * * ** * * * * *
75936327 TATCTTGGGAAGATAAGATTCG-CTGTCTTTGATCTGCTCCACTACTA-CTTAGGGAGATAGGAT
65 TACCTTGGGAAGATAAGATTTGTC-ATCTTCAATCTGCTCCATTGCTACCTCATGGAGATAAGAT
75936390 CTACA
129 CTACA
75936395 ATCTTCAGCCTGCTCCACT-CTTGCTCAAGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCC-TA
1 ATCTTCAGCCTGCTCCACTGC-TGCTCAAGGAGACAAGGCTAGTGGCTTAAATCTGC-TCCCTTA
* *
75936458 CTACCTTGGGAAGATAAGATTTGTCAT-TCTCAATCGGCTCTATTGCTACCTCATGGAGATAAGA
64 CTACCTTGGGAAGATAAGATTTGTCATCT-TCAATCTGCTCCATTGCTACCTCATGGAGATAAGA
75936522 TCTACA
128 TCTACA
* * * * * * * * * *
75936528 ATCTTCAGCCTACTCCACTGCTGCTTAGGGAGA-TAGGATGGTGACTTGAATTTGCTCCCTTGC-
1 ATCTTCAGCCTGCTCCACTGCTGCTCAAGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTACT
* ** * *
75936591 CCCTTTAGAGAGATAA-ATTCGTCATCTTCAGTCTGCTCCATTGCTACCTCATGGAGATAAGATC
66 ACCTTGGGA-AGATAAGATTTGTCATCTTCAATCTGCTCCATTGCTACCTCATGGAGATAAGATC
75936655 TACA
130 TACA
* * * *
75936659 ATCTTCAGCTTGCTCCACTGCTGCTC-AGAGATACAAGGCTAGTGGCTTAAATTTGCTCCCTTTC
1 ATCTTCAGCCTGCTCCACTGCTGCTCAAG-GAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTAC
* * * * * * *
75936723 TATCTTAGGG-AGATAAGATTAGCCATCTTCGATTTGCTTCATTCCTACCTCATGGAGATAAGAT
65 TACCTT-GGGAAGATAAGATTTGTCATCTTCAATCTGCTCCATTGCTACCTCATGGAGATAAGAT
75936787 CT
129 CT
75936789 GTGAATTCAC
Statistics
Matches: 320, Mismatches: 60, Indels: 28
0.78 0.15 0.07
Matches are distributed among these distances:
130 1 0.00
131 83 0.26
132 119 0.37
133 115 0.36
134 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (133 bp):
ATCTTCAGCCTGCTCCACTGCTGCTCAAGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTACT
ACCTTGGGAAGATAAGATTTGTCATCTTCAATCTGCTCCATTGCTACCTCATGGAGATAAGATCT
ACA
Found at i:75936651 original size:131 final size:133
Alignment explanation
Indices: 75936337--75936788 Score: 402
Period size: 133 Copynumber: 3.4 Consensus size: 133
75936327 TATCTTGGGA
* ** * * * * * *
75936337 AGATAAGATTCGCTGTCTTTGATCTGCTCCACTACTA-CTTAGGGAGATAGGATCTACAATCTTC
1 AGATAAGATTAGCCATCTTCGATCTGCTCCATTGCTACCTCATGGAGATAAGATCTACAATCTTC
* * * * * * *
75936401 AGCCTGCTCCACT-CTTGCTCA-AGGAGACAAGGCTAGTGGCTTAAATCTGCTTCCC-TACTACC
66 AGCCTACTCCACTGC-TGCTCAGA-GAGACAAGGATAGTGACTTAAATTTGC-TCCCTTCCCATC
*
75936463 TT-GGG
128 TTAGAG
* * * * *
75936468 AAGATAAGATTTGTCAT-TCTCAATCGGCTCTATTGCTACCTCATGGAGATAAGATCTACAATCT
1 -AGATAAGATTAGCCATCT-TCGATCTGCTCCATTGCTACCTCATGGAGATAAGATCTACAATCT
* * * * * *
75936532 TCAGCCTACTCCACTGCTGCTTAGGGAGA-TAGGATGGTGACTTGAATTTGCTCCCTTGCCCCT-
64 TCAGCCTACTCCACTGCTGCTCAGAGAGACAAGGATAGTGACTTAAATTTGCTCCCTT-CCCATC
75936595 TTAGAG
128 TTAGAG
* *
75936601 AGATAA-ATTCGTCATCTTC-AGTCTGCTCCATTGCTACCTCATGGAGATAAGATCTACAATCTT
1 AGATAAGATTAGCCATCTTCGA-TCTGCTCCATTGCTACCTCATGGAGATAAGATCTACAATCTT
* * * * * * *
75936664 CAGCTTGCTCCACTGCTGCTCAGAGATACAAGGCTAGTGGCTTAAATTTGCTCCCTTTCTATCTT
65 CAGCCTACTCCACTGCTGCTCAGAGAGACAAGGATAGTGACTTAAATTTGCTCCCTTCCCATCTT
*
75936729 AGGG
130 AGAG
* * *
75936733 AGATAAGATTAGCCATCTTCGATTTGCTTCATTCCTACCTCATGGAGATAAGATCT
1 AGATAAGATTAGCCATCTTCGATCTGCTCCATTGCTACCTCATGGAGATAAGATCT
75936789 GTGAATTCAC
Statistics
Matches: 258, Mismatches: 49, Indels: 25
0.78 0.15 0.08
Matches are distributed among these distances:
130 1 0.00
131 80 0.31
132 85 0.33
133 90 0.35
134 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (133 bp):
AGATAAGATTAGCCATCTTCGATCTGCTCCATTGCTACCTCATGGAGATAAGATCTACAATCTTC
AGCCTACTCCACTGCTGCTCAGAGAGACAAGGATAGTGACTTAAATTTGCTCCCTTCCCATCTTA
GAG
Found at i:75939513 original size:48 final size:48
Alignment explanation
Indices: 75939437--75939648 Score: 264
Period size: 48 Copynumber: 4.3 Consensus size: 48
75939427 GATGTACAAG
* * *
75939437 ATAA-ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
1 ATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
**
75939484 ATAAGATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTAT
1 ATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG--T
* * *
75939534 GAGATATATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGT
1 ---ATA-AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
*
75939586 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
* *
75939634 ATGAGATGTGTATAT
1 ATAAGATATGTATAT
75939649 ATTGTGGCCG
Statistics
Matches: 143, Mismatches: 15, Indels: 13
0.84 0.09 0.08
Matches are distributed among these distances:
47 4 0.03
48 93 0.65
49 2 0.01
50 1 0.01
52 1 0.01
53 3 0.02
54 39 0.27
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.33
Consensus pattern (48 bp):
ATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
Found at i:75939596 original size:102 final size:102
Alignment explanation
Indices: 75939441--75939650 Score: 348
Period size: 102 Copynumber: 2.1 Consensus size: 102
75939431 TACAAGATAA
* *
75939441 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATAAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATAAGATATGTATATGTGGTAA
75939506 AGCCGAATGGCTAACATGAAATATGTATGAGATATAT
66 AGCCGAATGGCTAACATGAAATATGTATGAGATATAT
* *
75939543 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATAAGATATGTATATGTGGTAA
** * *
75939608 AGCCGAATGGCTAATGTGAAATATGTATGAGATGTGT
66 AGCCGAATGGCTAACATGAAATATGTATGAGATATAT
75939645 ATATAT
1 ATATAT
75939651 TGTGGCCGAA
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
102 100 1.00
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.33
Consensus pattern (102 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATAAGATATGTATATGTGGTAA
AGCCGAATGGCTAACATGAAATATGTATGAGATATAT
Found at i:75939836 original size:37 final size:38
Alignment explanation
Indices: 75939786--75939890 Score: 160
Period size: 37 Copynumber: 2.8 Consensus size: 38
75939776 TATATTCCGG
75939786 GTAAGACCCGATGACTACGTGTGGAGATTATGTCT-GA
1 GTAAGACCCGATGACTACGTGTGGAGATTATGTCTCGA
* * *
75939823 GTAAGACCCGATGACTACGTGTGGAGATT-TTTTTCGG
1 GTAAGACCCGATGACTACGTGTGGAGATTATGTCTCGA
*
75939860 GTAAGACCCGATGACTACGTGTGGGGATTAT
1 GTAAGACCCGATGACTACGTGTGGAGATTAT
75939891 TCGAGCTAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
36 3 0.05
37 58 0.94
38 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (38 bp):
GTAAGACCCGATGACTACGTGTGGAGATTATGTCTCGA
Found at i:75949728 original size:20 final size:21
Alignment explanation
Indices: 75949695--75949769 Score: 75
Period size: 20 Copynumber: 3.7 Consensus size: 21
75949685 AATTGCTCTT
75949695 TCTTCTTTCCCAATTCTGAGC
1 TCTTCTTTCCCAATTCTGAGC
* ***
75949716 TCTT-TTTCTCAATGTCT-CTT
1 TCTTCTTTCCCAAT-TCTGAGC
75949736 TCTTCTTTCCCAATTCTGAGC
1 TCTTCTTTCCCAATTCTGAGC
*
75949757 TCTT-TTTCTCAAT
1 TCTTCTTTCCCAAT
75949770 GTCTTGCTTG
Statistics
Matches: 42, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
20 23 0.55
21 19 0.45
ACGTcount: A:0.13, C:0.29, G:0.07, T:0.51
Consensus pattern (21 bp):
TCTTCTTTCCCAATTCTGAGC
Found at i:75949736 original size:41 final size:41
Alignment explanation
Indices: 75949690--75949773 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
75949680 CCTCTAATTG
75949690 CTCTTTCTTCTTTCCCAATTCTGAGCTCTTTTTCTCAATGT
1 CTCTTTCTTCTTTCCCAATTCTGAGCTCTTTTTCTCAATGT
75949731 CTCTTTCTTCTTTCCCAATTCTGAGCTCTTTTTCTCAATGT
1 CTCTTTCTTCTTTCCCAATTCTGAGCTCTTTTTCTCAATGT
75949772 CT
1 CT
75949774 TGCTTGAAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.12, C:0.30, G:0.07, T:0.51
Consensus pattern (41 bp):
CTCTTTCTTCTTTCCCAATTCTGAGCTCTTTTTCTCAATGT
Found at i:75952738 original size:27 final size:27
Alignment explanation
Indices: 75952708--75952885 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
75952698 ATATTGAGTC
* * * *
75952708 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
75952735 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
75952762 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
75952790 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
75952817 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
75952844 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
75952871 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75952886 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:75952847 original size:82 final size:81
Alignment explanation
Indices: 75952729--75952884 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
75952719 TGCTATATAA
* *
75952729 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
75952794 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
75952811 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
75952875 CACTTAGTGC
65 CACTTAGTGC
75952885 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:75960901 original size:27 final size:27
Alignment explanation
Indices: 75960871--75961048 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
75960861 ATATTGAGTC
* * * *
75960871 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
75960898 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
75960925 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
75960953 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
75960980 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
75961007 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
75961034 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75961049 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:75961010 original size:82 final size:81
Alignment explanation
Indices: 75960892--75961047 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
75960882 TGCTATATAA
* *
75960892 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
75960957 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
75960974 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
75961038 CACTTAGTGC
65 CACTTAGTGC
75961048 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:75974623 original size:43 final size:43
Alignment explanation
Indices: 75974560--75974676 Score: 157
Period size: 42 Copynumber: 2.7 Consensus size: 43
75974550 TTCAACGAAC
*
75974560 TCGCACACTTAGTGCTAATTAATTAACCGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTA
* *
75974603 TCGCACATTTAGTGCCAATTAATT-ACCAAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTA
* *
75974645 TCGAACACTTAGTG-CTATTACATTAAACCGAA
1 TCGCACACTTAGTGCCAATTA-ATT-AACCGAA
75974677 CTTATATCAG
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 5 0.08
42 32 0.50
43 22 0.34
44 5 0.08
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.32
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTA
Found at i:75990708 original size:24 final size:24
Alignment explanation
Indices: 75990676--75990736 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
75990666 AAAATCCAAT
* * *
75990676 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTGTAAT-TA
75990700 GCACTATGTGTGCGAGTGTAATTA
1 GCACTATGTGTGCGAGTGTAATTA
75990724 GCACTATGTGTGC
1 GCACTATGTGTGC
75990737 AAATACGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTAATTA
Found at i:75994215 original size:80 final size:78
Alignment explanation
Indices: 75994083--75994297 Score: 297
Period size: 80 Copynumber: 2.7 Consensus size: 78
75994073 AAACCAAGTA
* * * *
75994083 CCTTCGGGATTTAACCGGATATAGCTACTCACTCAAATGCCTTCGGGACTTAGCCCGAATATAGT
1 CCTTCGGGACTTAGCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGT
**
75994148 AGTTCGCACAAATG
65 AACTCGCACAAATG
*
75994162 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCC-GGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAG
75994227 TAACTCGCACAAATG
64 TAACTCGCACAAATG
* *
75994242 CCTTCGGGACTTAGCCCGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCC
75994298 ATTATCATCG
Statistics
Matches: 123, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
78 1 0.01
79 50 0.41
80 72 0.59
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTA
ACTCGCACAAATG
Found at i:75994287 original size:39 final size:40
Alignment explanation
Indices: 75994116--75994297 Score: 294
Period size: 40 Copynumber: 4.6 Consensus size: 40
75994106 GCTACTCACT
**
75994116 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAGTTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCA
* *
75994156 CAAATGCCTTCGGGACTTAGCCTGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCA
*
75994196 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCA
* *
75994236 CAAATGCCTTCGGGACTTAGCCCGAAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCA
75994275 CAAATGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
75994298 ATTATCATCG
Statistics
Matches: 134, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 33 0.25
40 101 0.75
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCA
Found at i:76002102 original size:37 final size:37
Alignment explanation
Indices: 76002036--76002181 Score: 204
Period size: 37 Copynumber: 3.9 Consensus size: 37
76002026 AGCTCAGATG
* * * *
76002036 AAATCTCCACACGAAGTTATCTGGCCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
76002073 AAATCTCCACACGTAGTCATC-GGTTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCAGG-TCTTACCCGGACA
* *
76002110 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
* *
76002147 TAATCTCCACACGTAATCATCAGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGA
76002182 ATATATTTCC
Statistics
Matches: 101, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
36 2 0.02
37 97 0.96
38 2 0.02
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
Found at i:76002382 original size:48 final size:48
Alignment explanation
Indices: 76002323--76002527 Score: 313
Period size: 48 Copynumber: 4.3 Consensus size: 48
76002313 TATACACACG
* * *
76002323 TCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACGTA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
76002371 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
* * *
76002419 TCTCATATATATTTCACA-TTGTCCATTCGGCTTTATCACATATACATA
1 TCTCATACATATTTCACACTAG-CCATTCGGCTTTACCACATATACATA
* * *
76002467 ACTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
76002515 TCTCATACATATT
1 TCTCATACATATT
76002528 ACAATTTGCT
Statistics
Matches: 143, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
47 2 0.01
48 139 0.97
49 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (48 bp):
TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
Found at i:76005328 original size:39 final size:39
Alignment explanation
Indices: 76005274--76005446 Score: 217
Period size: 39 Copynumber: 4.4 Consensus size: 39
76005264 AAACCAAGTA
* * * *
76005274 CCTTCGGAATTTAGCCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATG
*
76005313 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
*
76005353 CCTTCGGGACTTAGCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
* *
76005392 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAG-CCGGATA-TAGTAACTCGCACAAATG
76005431 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
76005447 CGGTTATCAT
Statistics
Matches: 121, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
38 6 0.05
39 76 0.63
40 39 0.32
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
Found at i:76005351 original size:40 final size:40
Alignment explanation
Indices: 76005307--76005453 Score: 237
Period size: 39 Copynumber: 3.7 Consensus size: 40
76005297 GCTACTTGCT
76005307 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
76005347 CAAATGCCTTCGGGACTTAG-CCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
76005386 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
76005425 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
76005454 CATCCGAATA
Statistics
Matches: 99, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
38 6 0.06
39 61 0.62
40 31 0.31
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:76013330 original size:36 final size:37
Alignment explanation
Indices: 76013240--76013380 Score: 203
Period size: 37 Copynumber: 3.8 Consensus size: 37
76013230 GCTCAGATGA
* * * * *
76013240 AATCTCCACACGAAGTTATCTGGCCTTACCCAGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
* *
76013277 AATCTCCACACGTAGTCATTGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
76013314 AATCT-CACACGTAGTCATCGGGTCTTACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
*
76013350 AATCTCCACACGTAATCATCGGGTCTTACCC
1 AATCTCCACACGTAGTCATCGGGTCTTACCC
76013381 GGAATATATT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
36 34 0.37
37 59 0.63
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
Found at i:76013374 original size:73 final size:74
Alignment explanation
Indices: 76013240--76013383 Score: 218
Period size: 73 Copynumber: 2.0 Consensus size: 74
76013230 GCTCAGATGA
* * * *
76013240 AATCTCCACACGAAGTTATCTGGCCTTACCCAGACAAAATCTCCACACGTAGTCATTGGGTCTTA
1 AATCTCCACACGAAGTCATCGGGCCTTACCCAGACAAAATCTCCACACGTAATCATCGGGTCTTA
76013305 CCCGGACAT
66 CCCGGACAT
* * *
76013314 AATCT-CACACGTAGTCATCGGGTCTTACCCAGACATAATCTCCACACGTAATCATCGGGTCTTA
1 AATCTCCACACGAAGTCATCGGGCCTTACCCAGACAAAATCTCCACACGTAATCATCGGGTCTTA
76013378 CCCGGA
66 CCCGGA
76013384 ATATATTTCC
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
73 58 0.92
74 5 0.08
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (74 bp):
AATCTCCACACGAAGTCATCGGGCCTTACCCAGACAAAATCTCCACACGTAATCATCGGGTCTTA
CCCGGACAT
Found at i:76013584 original size:48 final size:48
Alignment explanation
Indices: 76013525--76013813 Score: 488
Period size: 48 Copynumber: 6.0 Consensus size: 48
76013515 TATACACACG
* * *
76013525 TCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACGTA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
76013573 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
* * * *
76013621 TCTCATATATATTTCACATTAGCCATTCGGCTTTATCGCATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
*
76013669 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
* *
76013717 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCTCATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
76013765 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
76013813 T
1 T
76013814 ATTTATCTTG
Statistics
Matches: 228, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 228 1.00
ACGTcount: A:0.29, C:0.28, G:0.07, T:0.36
Consensus pattern (48 bp):
TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
Found at i:76017263 original size:39 final size:40
Alignment explanation
Indices: 76017209--76017424 Score: 307
Period size: 39 Copynumber: 5.5 Consensus size: 40
76017199 AAACCAAGTA
* * * *
76017209 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
76017248 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
76017288 CCTTC-GGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76017327 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
76017367 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
76017406 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
76017425 TTATCATCCG
Statistics
Matches: 164, Mismatches: 8, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
38 1 0.01
39 87 0.53
40 76 0.46
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:76017286 original size:40 final size:40
Alignment explanation
Indices: 76017242--76017428 Score: 308
Period size: 39 Copynumber: 4.7 Consensus size: 40
76017232 GCTACTTGCT
76017242 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
76017282 CAAATGCCTTC-GGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
76017321 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
76017361 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
76017400 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
76017429 CATCCGAATA
Statistics
Matches: 138, Mismatches: 5, Indels: 8
0.91 0.03 0.05
Matches are distributed among these distances:
38 1 0.01
39 73 0.53
40 63 0.46
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:76017340 original size:79 final size:79
Alignment explanation
Indices: 76017242--76017428 Score: 313
Period size: 79 Copynumber: 2.4 Consensus size: 79
76017232 GCTACTTGCT
76017242 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGA
* *
76017306 TTATAGTAACTCGCA
66 AT-TAGTAACTAGCA
* *
76017321 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGA
*
76017386 ATTAGTCACTAGCA
66 ATTAGTAACTAGCA
76017400 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
76017429 CATCCGAATA
Statistics
Matches: 101, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
79 100 0.99
80 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGA
ATTAGTAACTAGCA
Found at i:76025344 original size:39 final size:39
Alignment explanation
Indices: 76025315--76025538 Score: 346
Period size: 39 Copynumber: 5.7 Consensus size: 39
76025305 GCTACTTGCT
76025315 CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
76025354 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGTTATAGTAACTCGCA
76025394 CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
*
76025433 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
76025472 CAAATGCCTTCGGGCTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTA-TAGTAACTCGCA
76025511 CAAATGCCTTCGGGACTTAG-CCGGTTAT
1 CAAATGCCTTC-GGACTTAGCCCGGTTAT
76025539 CATCTGAATA
Statistics
Matches: 172, Mismatches: 7, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
38 12 0.07
39 99 0.58
40 61 0.35
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:76025512 original size:78 final size:79
Alignment explanation
Indices: 76025282--76025532 Score: 375
Period size: 78 Copynumber: 3.2 Consensus size: 79
76025272 AAACCAAGTA
* * * *
76025282 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTATAG
76025345 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
76025360 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTATAGT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTATAGT
76025425 AACTCGCACAAATG
66 AACTCGCACAAATG
* *
76025439 CCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGG-AATTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTA-TAG
* *
76025502 TCACTAGCACAAATG
65 TAACTCGCACAAATG
76025517 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
76025533 GGTTATCATC
Statistics
Matches: 160, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
77 1 0.01
78 80 0.50
79 79 0.49
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTATAGT
AACTCGCACAAATG
Found at i:76030047 original size:25 final size:25
Alignment explanation
Indices: 76030019--76030075 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
76030009 TTCTCCTAAA
*
76030019 TTTTAATTTTATTTAATTATT-TAAT
1 TTTTAA-TTTATTGAATTATTATAAT
76030044 TTTTCAATTTATTGAATTATTAATAAT
1 TTTT-AATTTATTGAATTATT-ATAAT
76030071 TTTTA
1 TTTTA
76030076 TAATTTTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 17 0.61
26 3 0.11
27 8 0.29
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (25 bp):
TTTTAATTTATTGAATTATTATAAT
Found at i:76034612 original size:21 final size:22
Alignment explanation
Indices: 76034575--76034628 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
76034565 TAATAAGACT
* * *
76034575 ATATTAT-TTTATTATATTGTA
1 ATATTATATTAATGATATTATA
76034596 AT-TTATATTAATGATATTATA
1 ATATTATATTAATGATATTATA
*
76034617 ATATTATTTTAA
1 ATATTATATTAA
76034629 CAATTGTATG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 4 0.15
21 15 0.56
22 8 0.30
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (22 bp):
ATATTATATTAATGATATTATA
Found at i:76034773 original size:5 final size:5
Alignment explanation
Indices: 76034721--76034766 Score: 78
Period size: 5 Copynumber: 9.6 Consensus size: 5
76034711 AAGAAATTGT
76034721 TATTA TA-T- TATTA TATTA TATTA TATTA TATTA TATTA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TAT
76034767 ATTATATAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
3 2 0.05
4 2 0.05
5 35 0.90
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Done.