Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 233 of 325
Found at i:76413290 original size:47 final size:47
Alignment explanation
Indices: 76413227--76413530 Score: 416
Period size: 47 Copynumber: 6.4 Consensus size: 47
76413217 CCCTTCGGGA
* * *
76413227 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
76413274 CTTATCACATATATACACTTTCTCATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
76413321 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
76413368 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
76413415 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
76413462 CTTATCACGCATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
76413511 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
76413531 GTACATCAAT
Statistics
Matches: 237, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 195 0.82
49 40 0.17
50 1 0.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:76419102 original size:20 final size:20
Alignment explanation
Indices: 76419077--76419131 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
76419067 CATTCAATGT
76419077 TAAGTGTGATCGTTAGTTTC
1 TAAGTGTGATCGTTAGTTTC
76419097 TAAGTGTGATCGTTAGTTTC
1 TAAGTGTGATCGTTAGTTTC
*
76419117 TAAGTGTGGTCGTTA
1 TAAGTGTGATCGTTA
76419132 TTTTAGGACA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.20, C:0.09, G:0.27, T:0.44
Consensus pattern (20 bp):
TAAGTGTGATCGTTAGTTTC
Found at i:76420491 original size:26 final size:26
Alignment explanation
Indices: 76420455--76420510 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
76420445 GTTCTAGCTT
* *
76420455 GATAATACTATTCGTGTGTTTGATGA
1 GATAATACTATCCGTATGTTTGATGA
76420481 GATAATACTATCCGTATGTTTGATGA
1 GATAATACTATCCGTATGTTTGATGA
76420507 GATA
1 GATA
76420511 TCCTGTACCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (26 bp):
GATAATACTATCCGTATGTTTGATGA
Found at i:76425142 original size:28 final size:28
Alignment explanation
Indices: 76425109--76425192 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
76425099 ATTGCATGAC
*
76425109 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* * *
76425137 TATGAAAGTGATTGGGCCTAATAGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
76425165 TATGAATGTGATTGGGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
76425193 AATTAATAAG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:76426828 original size:16 final size:16
Alignment explanation
Indices: 76426803--76426877 Score: 87
Period size: 16 Copynumber: 4.7 Consensus size: 16
76426793 ATGTATCGAC
76426803 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
* *
76426819 AAAAGTCGAAATACCG
1 AAAAGCCGAAATGCCG
* *
76426835 AAAAGCTGAAATGCCA
1 AAAAGCCGAAATGCCG
* *
76426851 AAAAGCCGAAATACCA
1 AAAAGCCGAAATGCCG
*
76426867 AAAAGCTGAAA
1 AAAAGCCGAAA
76426878 GTTTGGCTAC
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.52, C:0.20, G:0.19, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:76426846 original size:32 final size:32
Alignment explanation
Indices: 76426803--76426877 Score: 114
Period size: 32 Copynumber: 2.3 Consensus size: 32
76426793 ATGTATCGAC
* * * *
76426803 AAAAGCCGAAATGCCGAAAAGTCGAAATACCG
1 AAAAGCTGAAATGCCAAAAAGCCGAAATACCA
76426835 AAAAGCTGAAATGCCAAAAAGCCGAAATACCA
1 AAAAGCTGAAATGCCAAAAAGCCGAAATACCA
76426867 AAAAGCTGAAA
1 AAAAGCTGAAA
76426878 GTTTGGCTAC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.52, C:0.20, G:0.19, T:0.09
Consensus pattern (32 bp):
AAAAGCTGAAATGCCAAAAAGCCGAAATACCA
Found at i:76427138 original size:29 final size:30
Alignment explanation
Indices: 76427093--76427167 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 30
76427083 CATGATTATG
*
76427093 AATGTGA-CTGGGCCTAACGGGCCATATA-
1 AATGTGATTTGGGCCTAACGGGCCATATAC
* *
76427121 AATGTGATTTGGGTCTAATGGGCCATATAC
1 AATGTGATTTGGGCCTAACGGGCCATATAC
76427151 AA-GTGATTTGGGCCTAA
1 AATGTGATTTGGGCCTAA
76427168 TGGACCTTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
28 7 0.17
29 32 0.78
30 2 0.05
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (30 bp):
AATGTGATTTGGGCCTAACGGGCCATATAC
Found at i:76427168 original size:29 final size:28
Alignment explanation
Indices: 76427101--76427202 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
76427091 TGAATGTGAC
*
76427101 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAA-GTGATT
*
76427130 TGGGTCTAATGGGCCATATACAAGTGATT
1 TGGGCCTAATGGGCCATATA-AAGTGATT
* *
76427159 TGGGCCTAATGGACCTTATGAATA-TGA-T
1 TGGGCCTAATGGGCCATAT-AA-AGTGATT
*
76427187 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
76427203 GATACAGGTA
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
28 14 0.23
29 44 0.71
30 4 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (28 bp):
TGGGCCTAATGGGCCATATAAAGTGATT
Found at i:76433947 original size:27 final size:26
Alignment explanation
Indices: 76433916--76434091 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 26
76433906 TAAATTGTAC
76433916 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
76433943 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
76433969 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
76433997 GGCACTAAGTGTGCGAGTCT-ACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
76434024 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
76434051 GGCACTAAGTGTGCGAGTTGA-TATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
76434077 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76434092 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 20, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
26 18 0.15
27 102 0.83
28 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:76433977 original size:54 final size:54
Alignment explanation
Indices: 76433916--76434091 Score: 182
Period size: 54 Copynumber: 3.3 Consensus size: 54
76433906 TAAATTGTAC
*
76433916 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATT-GACTATGTGGCACTAAGTGTGCGAAATGAATATGAT
* * * * *
76433971 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCG-AGTCTACTATG-T
1 AGCACTAAGTGTGCG-ATTGACTATGTGGCACTAAGTGTGCGAAAT-GAATATGAT
* * **
76434024 AGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGTTG-ATAT-AT
1 AGCACTAAGTGTGCGA-TTGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT
*
76434077 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76434092 GGCTCAATAT
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
53 22 0.22
54 74 0.74
55 4 0.04
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT
Found at i:76434056 original size:81 final size:81
Alignment explanation
Indices: 76433917--76434071 Score: 222
Period size: 81 Copynumber: 1.9 Consensus size: 81
76433907 AAATTGTACA
* * *
76433917 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
76433982 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
76433998 GCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTG
*
76434062 TGCGAGTTGA
65 TGCGAATTGA
76434072 TATATAGCAC
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
80 1 0.02
81 64 0.98
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:76442028 original size:27 final size:27
Alignment explanation
Indices: 76441998--76442117 Score: 134
Period size: 27 Copynumber: 4.4 Consensus size: 27
76441988 AAATTGTACA
76441998 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTT
* * *
76442025 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGTT
* **
76442052 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTT
* * *
76442079 GCACTAAGTGTGCGAGTCTTACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTT
76442107 GCACTAAGTGT
1 GCACTAAGTGT
76442118 ACGTGGCACT
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
27 59 0.76
28 19 0.24
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTT
Found at i:76442171 original size:26 final size:26
Alignment explanation
Indices: 76442123--76442172 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
76442113 AGTGTACGTG
* *
76442123 GCACTAAGTGTGCGAGTTGAATATTA
1 GCACTAAGTGTGCGAGCTCAATATTA
* *
76442149 GCACTGAGTGTGCGGGCTCAATAT
1 GCACTAAGTGTGCGAGCTCAATAT
76442173 ACATTCGTGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGAGCTCAATATTA
Found at i:76455365 original size:20 final size:20
Alignment explanation
Indices: 76455340--76455379 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
76455330 GCATTCAATG
76455340 CTAAGTGTGATCGTTATTTT
1 CTAAGTGTGATCGTTATTTT
76455360 CTAAGTGTGATCGTTATTTT
1 CTAAGTGTGATCGTTATTTT
76455380 AGGATAAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.20, T:0.50
Consensus pattern (20 bp):
CTAAGTGTGATCGTTATTTT
Found at i:76457704 original size:21 final size:20
Alignment explanation
Indices: 76457666--76457705 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
76457656 TTAGACTCCG
**
76457666 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
76457686 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
76457706 TCTGGGCCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:76458370 original size:156 final size:156
Alignment explanation
Indices: 76458079--76458373 Score: 403
Period size: 156 Copynumber: 1.9 Consensus size: 156
76458069 ATGTAAACAC
* *
76458079 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
* * * * *
76458144 TGGATCTGCTTCAGTGAAGGTCCAATTTGTTATGTCTTCGATCTACTCCCCATCTAATACAGAGA
66 TGGATCTGCTTCAATGAAGGTCCAATCTGATATGTCTTCGATCTACTCCCCATCGAATACAGAAA
*
76458209 TGCCAAATCATCTTGGATCTGCTTCA
131 AGCCAAATCATCTTGGATCTGCTTCA
*
76458235 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
* * * * ** * * **
76458300 TGGATTTGCTTCAATGAAGGT-TAGATCTGATATGTCTTTGATGTGGTCTCCGTCGAATATGGAA
66 TGGATCTGCTTCAATGAAGGTCCA-ATCTGATATGTCTTCGATCTACTCCCCATCGAATACAGAA
76458364 AAGCCAAATC
130 AAGCCAAATC
76458374 TGTTTCTTCG
Statistics
Matches: 119, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
155 1 0.01
156 118 0.99
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (156 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCAATGAAGGTCCAATCTGATATGTCTTCGATCTACTCCCCATCGAATACAGAAA
AGCCAAATCATCTTGGATCTGCTTCA
Found at i:76458373 original size:78 final size:78
Alignment explanation
Indices: 76458079--76458337 Score: 412
Period size: 78 Copynumber: 3.3 Consensus size: 78
76458069 ATGTAAACAC
* *
76458079 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
76458144 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * *
76458157 GTGAAGGTCCA-ATTTGTTATGTCTTCGATCTACTCCCCATCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATC
76458221 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
*
76458235 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
76458300 TGGATTTGCTTCA
66 TGGATCTGCTTCA
* *
76458313 ATGAAGGTTAGATCTGATATGTCTT
1 ATGAAGGTCAGATCTGCTATGTCTT
76458338 TGATGTGGTC
Statistics
Matches: 164, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
77 2 0.01
78 160 0.98
79 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:76458633 original size:120 final size:120
Alignment explanation
Indices: 76458420--76458671 Score: 459
Period size: 120 Copynumber: 2.1 Consensus size: 120
76458410 CCAAATCATC
*
76458420 TTAGATCTGCTACAGTGTAAACACGTGAAAGCCAAATCTACTATGTCTTCGATCTGCTCCTTGTC
1 TTAGATCTGCTACAGCGTAAACACGTGAAAGCCAAATCTACTATGTCTTCGATCTGCTCCTTGTC
*
76458485 AACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGG
66 AACGCAAGGATGCCAAATCATCCTGGATCTACTTCGATGTGAAAACATCCAAAGG
* *
76458540 TTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTACTATGTCTTCGATTTGCTCCTTGTC
1 TTAGATCTGCTACAGCGTAAACACGTGAAAGCCAAATCTACTATGTCTTCGATCTGCTCCTTGTC
*
76458605 AACGCAAGGATGCCAAATCATCCTGGATCTACTTCGATGTGAAAACATCCGAAGG
66 AACGCAAGGATGCCAAATCATCCTGGATCTACTTCGATGTGAAAACATCCAAAGG
76458660 TTAGATCTGCTA
1 TTAGATCTGCTA
76458672 TGTCTTTGAT
Statistics
Matches: 126, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 126 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (120 bp):
TTAGATCTGCTACAGCGTAAACACGTGAAAGCCAAATCTACTATGTCTTCGATCTGCTCCTTGTC
AACGCAAGGATGCCAAATCATCCTGGATCTACTTCGATGTGAAAACATCCAAAGG
Found at i:76460598 original size:29 final size:29
Alignment explanation
Indices: 76460563--76460636 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
76460553 GTTGTGAGAT
* *
76460563 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
76460592 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
76460621 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76460637 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:76471919 original size:17 final size:18
Alignment explanation
Indices: 76471887--76471920 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
76471877 GATATGATAC
*
76471887 TAAAATTATTTAAAAAAT
1 TAAAATTATATAAAAAAT
76471905 TAAAA-TATATAAAAAA
1 TAAAATTATATAAAAAA
76471921 ACAGAGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TAAAATTATATAAAAAAT
Found at i:76472210 original size:22 final size:21
Alignment explanation
Indices: 76472175--76472250 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
76472165 AAAAGGTATC
* *
76472175 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
76472196 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
76472219 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
76472238 TGC-AATCATATCT
1 TACAAATCATATCT
76472251 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:76472267 original size:35 final size:37
Alignment explanation
Indices: 76472204--76472282 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
76472194 ATTACAAAAT
76472204 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
76472240 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
76472275 CATATCAT
1 CATATCAT
76472283 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:76472280 original size:14 final size:15
Alignment explanation
Indices: 76472225--76472280 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
76472215 AGATTGCATA
76472225 TCATATCTAAGATTG
1 TCATATCTAAGATTG
76472240 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
76472258 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
76472275 -CATATC
1 TCATATC
76472281 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:76472290 original size:17 final size:19
Alignment explanation
Indices: 76472211--76472282 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
76472201 AATCATATCT
76472211 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
76472230 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
76472248 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
76472265 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
76472283 TGAAGATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:76475572 original size:44 final size:42
Alignment explanation
Indices: 76475524--76475674 Score: 164
Period size: 44 Copynumber: 3.5 Consensus size: 42
76475514 TATGTGTTAT
* *
76475524 CGTGTAACACCATGTCTGGGACATTGGCATCGACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGA-TT-TGATTTA
*
76475568 CGTGTAAGACCACGTCTGGGACATTGGCATTGTATTTGATTT-
1 CGTGTAAGACCACGTCTGGGACATTGGCATCG-ATTTGATTTA
* * *
76475610 CGTGTAAGACC-CTATCTGGGACAGTGGCATCAATATTTGA-TTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATC--GATTTGATTTA
*
76475653 CATGTAAGACCACGTCTGGGAC
1 CGTGTAAGACCACGTCTGGGAC
76475675 GTTTGCATTG
Statistics
Matches: 92, Mismatches: 9, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.30
43 30 0.33
44 32 0.35
45 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATTTGATTTA
Found at i:76475671 original size:43 final size:43
Alignment explanation
Indices: 76475524--76475674 Score: 164
Period size: 43 Copynumber: 3.5 Consensus size: 43
76475514 TATGTGTTAT
* * * *
76475524 CGTGTAACACCATGTCTGGGACATTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATC-AATATTTGA-TTA
** *
76475568 CGTGTAAGACCACGTCTGGGACATTGGCAT-TGTATTTGATTT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCAATATTTGATTA
* *
76475610 CGTGTAAGACC-CTATCTGGGACAGTGGCATCAATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCAATATTTGATTA
*
76475653 CATGTAAGACCACGTCTGGGAC
1 CGTGTAAGACCACGTCTGGGAC
76475675 GTTTGCATTG
Statistics
Matches: 90, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 29 0.32
43 31 0.34
44 29 0.32
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCAATATTTGATTA
Found at i:76488757 original size:6 final size:6
Alignment explanation
Indices: 76488726--76488918 Score: 110
Period size: 6 Copynumber: 31.3 Consensus size: 6
76488716 AAGAAACATT
* * * * *
76488726 ATCAGA A-CTAGA ATCAAA ATGAGA ATCGGA ATCAGA ATGAAA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
76488773 TTGACAAA ATCAAA ATCAGA ATCAGA ATCAGA ATTAGTTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG--A ATCAGA ATCAGA
* * * * *
76488824 ATAAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ACCAGA ATCAAA ATTAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
76488875 A-CAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
76488919 GTGAATGCAA
Statistics
Matches: 142, Mismatches: 28, Indels: 34
0.70 0.14 0.17
Matches are distributed among these distances:
5 10 0.07
6 113 0.80
7 12 0.08
8 7 0.05
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:76488817 original size:25 final size:25
Alignment explanation
Indices: 76488789--76488855 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
76488779 AAATCAAAAT
* *
76488789 CAGAATCAGAATCAGAATTAGTTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
76488814 CAGAATCAGAATAAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
76488839 CAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGAA
76488856 CCAGAATCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:76488819 original size:19 final size:19
Alignment explanation
Indices: 76488795--76488887 Score: 82
Period size: 19 Copynumber: 4.6 Consensus size: 19
76488785 AAATCAGAAT
*
76488795 CAGAATCAGAATTAGTTAA
1 CAGAATCAGAATTAGGTAA
76488814 CAGAATCAGAATAAGTATCAGGTAA
1 CAGAATCAG---AA-T-T-AGGTAA
*
76488839 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATTAGGTAA
*
76488856 CCAGAATCAAAATTAGGTAA
1 -CAGAATCAGAATTAGGTAA
76488876 CAGAATCAGAAT
1 CAGAATCAGAAT
76488888 CAGTATCAGG
Statistics
Matches: 60, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
17 2 0.03
18 13 0.22
19 22 0.37
20 2 0.03
21 1 0.02
22 4 0.07
23 1 0.02
24 1 0.02
25 14 0.23
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGAATTAGGTAA
Found at i:76488821 original size:37 final size:37
Alignment explanation
Indices: 76488740--76488821 Score: 92
Period size: 37 Copynumber: 2.2 Consensus size: 37
76488730 GAACTAGAAT
* * * * *
76488740 CAAAATGAGAATCGGAATCAGAATGAAAATCAGTTGA
1 CAAAATCAAAATCAGAATCAGAATCAAAATCAGTTAA
* *
76488777 CAAAATCAAAATCAGAATCAGAATCAGAATTAGTTAA
1 CAAAATCAAAATCAGAATCAGAATCAAAATCAGTTAA
*
76488814 CAGAATCA
1 CAAAATCA
76488822 GAATAAGTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (37 bp):
CAAAATCAAAATCAGAATCAGAATCAAAATCAGTTAA
Found at i:76488834 original size:37 final size:37
Alignment explanation
Indices: 76488754--76488834 Score: 90
Period size: 37 Copynumber: 2.2 Consensus size: 37
76488744 ATGAGAATCG
* * *
76488754 GAATCAGAATGAAAATCAGTTGACAAAATCAAAATCA
1 GAATCAGAATCAAAATCAGTTAACAAAATCAAAATAA
* * * *
76488791 GAATCAGAATCAGAATTAGTTAACAGAATCAGAATAA
1 GAATCAGAATCAAAATCAGTTAACAAAATCAAAATAA
*
76488828 GTATCAG
1 GAATCAG
76488835 GTAACAGAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (37 bp):
GAATCAGAATCAAAATCAGTTAACAAAATCAAAATAA
Found at i:76488834 original size:62 final size:62
Alignment explanation
Indices: 76488754--76488918 Score: 233
Period size: 62 Copynumber: 2.7 Consensus size: 62
76488744 ATGAGAATCG
* * * * * * *
76488754 GAATCAGAATGAA-AATCAGTTGACAAAATCAAAATCAGAATCAGAATCAGAATTAGTTAACA
1 GAATCAGAAT-AAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAAAATTAGGTAACA
*
76488816 GAATCAGAATAAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAAAATTAGGTAACA
1 GAATCAGAATAAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAAAATTAGGTAACA
*
76488878 GAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAT
1 GAATCAGAATAAGTATCAGGTAACAGAATCAGAATCAGAAT
76488919 GTGAATGCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
61 2 0.02
62 90 0.98
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (62 bp):
GAATCAGAATAAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAAAATTAGGTAACA
Found at i:76488855 original size:37 final size:37
Alignment explanation
Indices: 76488814--76488896 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 37
76488804 AATTAGTTAA
*
76488814 CAGAATCAGAAT-AAGTATCAGGTAACAGAATCAGAAT
1 CAGAATCAGAATCAA-AATCAGGTAACAGAATCAGAAT
* *
76488851 CAGAACCAGAATCAAAATTAGGTAACAGAATCAGAAT
1 CAGAATCAGAATCAAAATCAGGTAACAGAATCAGAAT
*
76488888 CAGTATCAG
1 CAGAATCAG
76488897 GTAACAGAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
37 38 0.95
38 2 0.05
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (37 bp):
CAGAATCAGAATCAAAATCAGGTAACAGAATCAGAAT
Found at i:76488915 original size:25 final size:25
Alignment explanation
Indices: 76488839--76488918 Score: 101
Period size: 25 Copynumber: 3.2 Consensus size: 25
76488829 TATCAGGTAA
*
76488839 CAGAATCA-G-AATCAGAACCAGAAT
1 CAGAATCAGGTAA-CAGAATCAGAAT
* *
76488863 CAAAATTAGGTAACAGAATCAGAAT
1 CAGAATCAGGTAACAGAATCAGAAT
*
76488888 CAGTATCAGGTAACAGAATCAGAAT
1 CAGAATCAGGTAACAGAATCAGAAT
76488913 CAGAAT
1 CAGAAT
76488919 GTGAATGCAA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
24 6 0.13
25 39 0.83
26 2 0.04
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.17
Consensus pattern (25 bp):
CAGAATCAGGTAACAGAATCAGAAT
Found at i:76489193 original size:27 final size:26
Alignment explanation
Indices: 76489146--76489196 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
76489136 CGAGGCTGCC
*
76489146 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
76489172 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
76489197 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:76489470 original size:27 final size:27
Alignment explanation
Indices: 76489441--76489691 Score: 260
Period size: 27 Copynumber: 9.3 Consensus size: 27
76489431 AGGGAAAATG
* *
76489441 GTAATTTTACCCTACAAGGGTATCTCG
1 GTAATTTTACCCTACAAGGGTATTTCA
* *
76489468 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTTTACCCTACAAGGGTATTTCA
* * *
76489495 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTTTACCCTACAAGGGTATTTCA
76489522 GT-ATTTCTACCCTACAAGGGTATTTC-
1 GTAATTT-TACCCTACAAGGGTATTTCA
* * *
76489548 GTTAATTCTACCCTACAGGGGTATTTTA
1 G-TAATTTTACCCTACAAGGGTATTTCA
* * * *
76489576 GTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTTTACCCTACAAGGGTATTTCA
* * *
76489603 GT-ATTTCTACCCTATAGGGGTATTTCG
1 GTAATTT-TACCCTACAAGGGTATTTCA
*
76489630 GT-ATTTCTACCCTACAAGGGTATTTCG
1 GTAATTT-TACCCTACAAGGGTATTTCA
76489657 GT-ATTTCTACCCTACAAGGGTATTTCA
1 GTAATTT-TACCCTACAAGGGTATTTCA
76489684 GTAATTTT
1 GTAATTTT
76489692 GTAAATTAAT
Statistics
Matches: 198, Mismatches: 20, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.04
27 183 0.92
28 8 0.04
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.39
Consensus pattern (27 bp):
GTAATTTTACCCTACAAGGGTATTTCA
Found at i:76489516 original size:54 final size:54
Alignment explanation
Indices: 76489441--76489689 Score: 320
Period size: 54 Copynumber: 4.6 Consensus size: 54
76489431 AGGGAAAATG
* * * *
76489441 GTAATTTTACCCTACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTA
* * *
76489495 GTAATTCTACCTTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTA-TTTC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTA
* * *
76489548 GTTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTA
* * * * **
76489603 GTATTTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTA
* *
76489657 GTATTTCTACCCTACAAGGGTATTTCAGTAATT
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATT
76489690 TTGTAAATTA
Statistics
Matches: 167, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
53 4 0.02
54 159 0.95
55 4 0.02
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTA
Found at i:76489555 original size:81 final size:81
Alignment explanation
Indices: 76489444--76489686 Score: 362
Period size: 81 Copynumber: 3.0 Consensus size: 81
76489434 GAAAATGGTA
* *
76489444 ATTT-TACCCTACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCTT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCT
76489508 ACAGGGGTATTTCAGT
66 ACAGGGGTATTTCAGT
* *
76489524 ATTTCTACCCTACAAGGGTATTTCGTTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCT
* *
76489589 ATAGGGGTATTTTAGT
66 ACAGGGGTATTTCAGT
* * * ** *
76489605 ATTTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCT
*
76489670 ACAAGGGTATTTCAGT
66 ACAGGGGTATTTCAGT
76489686 A
1 A
76489687 ATTTTGTAAA
Statistics
Matches: 145, Mismatches: 17, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 4 0.03
81 141 0.97
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.38
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCT
ACAGGGGTATTTCAGT
Found at i:76490023 original size:27 final size:27
Alignment explanation
Indices: 76489725--76490014 Score: 339
Period size: 27 Copynumber: 10.7 Consensus size: 27
76489715 TTCTGTAAAT
* **
76489725 CAGGGGTACTTTGGTAATTTTACAAGT
1 CAGGGGTATTTTGGTAATTTTACAAAC
** **
76489752 C-GAGGGTATTTTAATAATTTTACAAGT
1 CAG-GGGTATTTTGGTAATTTTACAAAC
* ** * *
76489779 CAAGGGTATTTCAGTAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
76489806 CAGTGGTATTTTGGTAATTTCACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
76489833 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
76489860 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
76489887 CAGGGGTATTTTGGTAATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
76489914 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * *
76489941 CAAGGGTATTTTGGTGATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * *
76489968 CAAGGGTATTTTAGTAATTTTAAAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
76489995 TAGGGGTATTTTGGTAATTT
1 CAGGGGTATTTTGGTAATTT
76490015 GGTAAACTAA
Statistics
Matches: 233, Mismatches: 28, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
26 1 0.00
27 232 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:76491990 original size:6 final size:6
Alignment explanation
Indices: 76491960--76492152 Score: 128
Period size: 6 Copynumber: 31.3 Consensus size: 6
76491950 AAGAAACATT
* * * *
76491960 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAAA ATCAAA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
76492007 GTGACAGA ATCAAA ATCAAA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
76492058 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ACCAGA ATCAGA ATTAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* *
76492109 A-CAGA ATCAGA ATCAGT ATCAGGTA AT-AGA ATTAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
76492153 GTGAATGCAA
Statistics
Matches: 149, Mismatches: 21, Indels: 34
0.73 0.10 0.17
Matches are distributed among these distances:
5 11 0.07
6 117 0.79
7 13 0.09
8 8 0.05
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:76492054 original size:25 final size:25
Alignment explanation
Indices: 76492026--76492089 Score: 110
Period size: 25 Copynumber: 2.6 Consensus size: 25
76492016 TCAAAATCAA
*
76492026 AATCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
*
76492051 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
76492076 AATCAGAATCAGAA
1 AATCAGAATCAGAA
76492090 CCAGAATCAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:76492068 original size:37 final size:37
Alignment explanation
Indices: 76491981--76492102 Score: 115
Period size: 37 Copynumber: 3.3 Consensus size: 37
76491971 AATCAAAATG
* *
76491981 AGAATCAGAATCAAAATCAAAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAAAATCAGGTAACAGAATC
* * * *
76492018 AAAATCAAAATCAGAATCAGAATTAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAAAATCAGGTAACAGAATC
* * *
76492055 AGAATCAGTATCAGGTAA-CAGAATCA-G-AATCAGAACC
1 AGAATCAGAATCA-G-AATCAAAATCAGGTAA-CAGAATC
76492092 AGAATCAGAAT
1 AGAATCAGAAT
76492103 TAGGTAACAG
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
36 2 0.03
37 58 0.83
38 8 0.11
39 2 0.03
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.17
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAAAATCAGGTAACAGAATC
Found at i:76492069 original size:62 final size:62
Alignment explanation
Indices: 76491986--76492140 Score: 238
Period size: 62 Copynumber: 2.5 Consensus size: 62
76491976 AAATGAGAAT
* ** * *
76491986 CAGAATCAAAATCAAAATCAGGTGACAGAATCAAAATCAAAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAAAACCAGAATCAGAATTAGGTAA
* *
76492048 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAAAACCAGAATCAGAATTAGGTAA
*
76492110 CAGAATCAGAATCAGTATCAGGTAATAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
76492141 TAGAATCAGA
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 85 1.00
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAAAACCAGAATCAGAATTAGGTAA
Found at i:76492108 original size:37 final size:37
Alignment explanation
Indices: 76492048--76492124 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
76492038 AATTAGGTAA
* *
76492048 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAAT
1 CAGAACCAGAATCAGAATCAGGTAACAGAATCAGAAT
*
76492085 CAGAACCAGAATCAGAATTAGGTAACAGAATCAGAAT
1 CAGAACCAGAATCAGAATCAGGTAACAGAATCAGAAT
76492122 CAG
1 CAG
76492125 TATCAGGTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.17
Consensus pattern (37 bp):
CAGAACCAGAATCAGAATCAGGTAACAGAATCAGAAT
Found at i:76492119 original size:25 final size:25
Alignment explanation
Indices: 76491986--76492152 Score: 107
Period size: 25 Copynumber: 6.7 Consensus size: 25
76491976 AAATGAGAAT
* * *
76491986 CAGAATCAAAATCAAAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
76492011 CAGAATCAAAATCAAAATCA-G-AA
1 CAGAATCAGAATCAGAATCAGGTAA
*
76492034 TCAGAATTAGGTAA-CAGAATCA-G-AA
1 -CAGAATCA-G-AATCAGAATCAGGTAA
*
76492059 TCAGTATCAGGTAA-CAGAATCA-G-AA
1 -CAGAATCA-G-AATCAGAATCAGGTAA
* *
76492084 TCAGAACCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGAATCAGGTAA
*
76492110 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
76492135 TAGAATTAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
76492153 GTGAATGCAA
Statistics
Matches: 121, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
23 3 0.02
24 16 0.13
25 98 0.81
26 4 0.03
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:76492140 original size:19 final size:19
Alignment explanation
Indices: 76491995--76492124 Score: 106
Period size: 19 Copynumber: 6.6 Consensus size: 19
76491985 TCAGAATCAA
* *
76491995 AATCAAAATCAGGTGACAG
1 AATCAGAATCAGGTAACAG
* *
76492014 AATCAAAATCA--AAATCAG
1 AATCAGAATCAGGTAA-CAG
*
76492032 AATCAGAATTAGGTAACAG
1 AATCAGAATCAGGTAACAG
76492051 AATCAGAATCAGTATCAGGTAACAG
1 AATCAG----A--ATCAGGTAACAG
76492076 AATCAGAATCA-G-AACCAG
1 AATCAGAATCAGGTAA-CAG
*
76492094 AATCAGAATTAGGTAACAG
1 AATCAGAATCAGGTAACAG
76492113 AATCAGAATCAG
1 AATCAGAATCAG
76492125 TATCAGGTAA
Statistics
Matches: 91, Mismatches: 8, Indels: 24
0.74 0.07 0.20
Matches are distributed among these distances:
17 3 0.03
18 26 0.29
19 39 0.43
20 4 0.04
21 1 0.01
23 1 0.01
25 17 0.19
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (19 bp):
AATCAGAATCAGGTAACAG
Found at i:76492149 original size:31 final size:31
Alignment explanation
Indices: 76491981--76492152 Score: 140
Period size: 31 Copynumber: 5.5 Consensus size: 31
76491971 AATCAAAATG
* ** * *
76491981 AGAATCAGAATCAAAATCAAAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGTATCAGGTAAT
* * *
76492012 AGAATCAAAATCAAAATCAGAATCA-G-AATT
1 AGAATCAGAATCAGAATCAGTATCAGGTAA-T
*
76492042 AGGTAA-CAGAATCAGAATCAGTATCAGGTAAC
1 A-G-AATCAGAATCAGAATCAGTATCAGGTAAT
* *
76492074 AGAATCAGAATCAGAACCAGAATCA-G-AATT
1 AGAATCAGAATCAGAATCAGTATCAGGTAA-T
76492104 AGGTAA-CAGAATCAGAATCAGTATCAGGTAAT
1 A-G-AATCAGAATCAGAATCAGTATCAGGTAAT
*
76492136 AGAATTAGAATCAGAAT
1 AGAATCAGAATCAGAAT
76492153 GTGAATGCAA
Statistics
Matches: 115, Mismatches: 14, Indels: 24
0.75 0.09 0.16
Matches are distributed among these distances:
29 3 0.03
30 8 0.07
31 91 0.79
32 9 0.08
33 4 0.03
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGTATCAGGTAAT
Found at i:76492708 original size:27 final size:27
Alignment explanation
Indices: 76492678--76492919 Score: 213
Period size: 27 Copynumber: 9.0 Consensus size: 27
76492668 GGGGTAAAAT
* *
76492678 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
76492705 GGTAATTCTACCCTA-AAGGGGTATTTT
1 GGTAATTTTACCCTACAA-GGGTATTTC
* * * *
76492732 AGTAATTCTACCCCACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
76492759 AGT-ATTTCTACTCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * * *
76492786 GTTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
76492813 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
76492840 GGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
76492867 GGTATTTTTACCCTATAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
76492894 GGT-ATTTCTACCCTATAAGAGTATTT
1 GGTAATTT-TACCCTACAAGGGTATTT
76492920 TGATAATATT
Statistics
Matches: 178, Mismatches: 30, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
26 11 0.06
27 160 0.90
28 7 0.04
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:76492806 original size:81 final size:81
Alignment explanation
Indices: 76492682--76492906 Score: 317
Period size: 81 Copynumber: 2.8 Consensus size: 81
76492672 TAAAATGGTA
* * *
76492682 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTAAAGGGGTATTTTAGTAATTCTACCCC
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCC
76492746 ACAGGGGTATTTCAGT
66 ACAGGGGTATTTCAGT
* * *
76492762 ATTTCTACTCTACAAGGGTATTTCGTTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCC
*
76492827 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCAGT
* * * * ** *
76492843 ATTTCTACCCTACAGGGGTATTTCGGTATTTTTACCCTATAAGGGTATTTCGGTATTTCTACCC
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCC
76492907 TATAAGAGTA
Statistics
Matches: 128, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 4 0.03
81 124 0.97
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCC
ACAGGGGTATTTCAGT
Found at i:76492919 original size:54 final size:54
Alignment explanation
Indices: 76492678--76492908 Score: 266
Period size: 54 Copynumber: 4.3 Consensus size: 54
76492668 GGGGTAAAAT
* * * * * *
76492678 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTA-AAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAA-GGGTATTTC
* * * *
76492732 AGTAATTCTACCCCACAGGGGTATTTCAGTATTTCTACTCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
* * * *
76492786 GTTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
* * * * *
76492840 GGTATTTCTACCCTACAGGGGTATTTCGGTATTTTTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
*
76492894 GGTATTTCTACCCTA
1 GGTAATTCTACCCTA
76492909 TAAGAGTATT
Statistics
Matches: 151, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
54 149 0.99
55 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC
Found at i:76493078 original size:81 final size:81
Alignment explanation
Indices: 76492949--76493224 Score: 322
Period size: 81 Copynumber: 3.4 Consensus size: 81
76492939 GGGTAAAATC
** * * * * ***
76492949 GTAATTTTGTAAATCAGGGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTAC
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTAC
*** * *
76493013 AGGTCGAGGGTATTTCA
65 AAACCAAGGGTATTTTA
* * *
76493030 GTAATTTCACAAATCAGGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACA
* *
76493095 AACCTAGGGTATTTTG
66 AACCAAGGGTATTTTA
* * * *
76493111 GTAATTTTACAAACCAGGGGTA-TTTGGTAATTTTACAAACCAAGGGTATTTTGGTGATTTTATA
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACA
76493175 AACCAAGGGTATTTTA
66 AACCAAGGGTATTTTA
76493191 GTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GTAATTTTACAAACCAGGGGTATTTTGGTAATTT
76493225 GGTAAACTAA
Statistics
Matches: 168, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
80 73 0.43
81 91 0.54
82 4 0.02
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.38
Consensus pattern (81 bp):
GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACA
AACCAAGGGTATTTTA
Found at i:76493231 original size:27 final size:27
Alignment explanation
Indices: 76492949--76493224 Score: 290
Period size: 27 Copynumber: 10.3 Consensus size: 27
76492939 GGGTAAAATC
** * *
76492949 GTAATTTTGTAAATCAGGGGTACTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
** **
76492976 GTAATTTTACAAGTC-GAGGGTATTTCA
1 GTAATTTTACAAACCAG-GGGTATTTTG
* *** **
76493003 ATAATTTTACAGGTC-GAGGGTATTTCA
1 GTAATTTTACAAACCAG-GGGTATTTTG
* *
76493030 GTAATTTCACAAATCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
* *
76493057 GTAATTTCACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
76493084 GTAATTTTACAAACCTA-GGGTATTTTG
1 GTAATTTTACAAACC-AGGGGTATTTTG
76493111 GTAATTTTACAAACCAGGGGTA-TTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
*
76493137 GTAATTTTACAAACCAAGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
* * * *
76493164 GTGATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAACCAGGGGTATTTTG
76493191 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAGGGGTATTTTG
76493218 GTAATTT
1 GTAATTT
76493225 GGTAAACTAA
Statistics
Matches: 218, Mismatches: 26, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
26 27 0.12
27 189 0.87
28 2 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAACCAGGGGTATTTTG
Found at i:76493240 original size:80 final size:80
Alignment explanation
Indices: 76493019--76493224 Score: 297
Period size: 80 Copynumber: 2.6 Consensus size: 80
76493009 TTACAGGTCG
* * * *
76493019 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTG
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTCACAAACTA-AGGTATTTTG
*
76493084 GTAATTTTACAAACCT
65 GTAATTTTACAAACCA
* * *
76493100 AGGGTATTTTGGTAATTTTACAAACCAGGGGTA-TTTGGTAATTTTACAAACCAAGGGTATTTTG
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTCACAAACTAA-GGTATTTTG
* *
76493164 GTGATTTTATAAACCA
65 GTAATTTTACAAACCA
76493180 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
76493225 GGTAAACTAA
Statistics
Matches: 112, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
80 72 0.64
81 40 0.36
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (80 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTCACAAACTAAGGTATTTTGG
TAATTTTACAAACCA
Found at i:76493413 original size:17 final size:17
Alignment explanation
Indices: 76493393--76493426 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
76493383 AACAACTTAT
*
76493393 CCAATTAGGCCCGTATG
1 CCAATTAGGCCCATATG
*
76493410 CCAATTGGGCCCATATG
1 CCAATTAGGCCCATATG
76493427 GCCCCTTTCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (17 bp):
CCAATTAGGCCCATATG
Found at i:76495997 original size:40 final size:40
Alignment explanation
Indices: 76495942--76496164 Score: 335
Period size: 40 Copynumber: 5.6 Consensus size: 40
76495932 GATGATAACG
76495942 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
76495982 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
* *
76496022 GGGCTAAGTCCCAAAGGCTTTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
* * *
76496062 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCA
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCC
* *
76496102 GGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACTAAT-TCC
76496142 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
76496165 AGCGAGTAGC
Statistics
Matches: 171, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
39 2 0.01
40 167 0.98
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
Found at i:76504063 original size:40 final size:40
Alignment explanation
Indices: 76504008--76504190 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
76503998 GATGATAACG
* *
76504008 GGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTA-ATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA-TCC
76504048 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA-TCC
* * *
76504088 GGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC
* * * *
76504128 GGGCTAAGCCCCGAAGGCATTTATGCGAACT-ACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACTATATCC
*
76504168 AGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
76504191 AGCGAGTAGC
Statistics
Matches: 128, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
40 125 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCC
Found at i:76504204 original size:40 final size:40
Alignment explanation
Indices: 76504008--76504223 Score: 212
Period size: 40 Copynumber: 5.4 Consensus size: 40
76503998 GATGATAACG
* * *
76504008 GGGCTAAGTCTCGAAGGCATTTGTGCTAGT-GACTA-ATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTAG-CTATA-TCC
*
76504048 GGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTAG-CTATA-TCC
*
76504088 GGGCTAAGTCTCGAAGGCATTTGTGCGAGTTA-CTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC
* * *
76504128 GGGCTAAGCCCCGAAGGCATTTATGCGAACTA-CTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCG-AGTAGCTATATCC
* * *
76504168 AGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCC
* *
76504208 -GTCTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
76504224 TACTTGGTTT
Statistics
Matches: 155, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 17 0.11
40 135 0.87
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCC
Found at i:76514917 original size:10 final size:9
Alignment explanation
Indices: 76514902--76514957 Score: 58
Period size: 10 Copynumber: 5.7 Consensus size: 9
76514892 ATTCTAAAAG
76514902 ATAAATACAA
1 ATAAATA-AA
76514912 ATAAATAAA
1 ATAAATAAA
*
76514921 GATAATTAAAA
1 -ATAAAT-AAA
76514932 ATAAATAAA
1 ATAAATAAA
76514941 TATAAATGAAA
1 -ATAAAT-AAA
76514952 ATAAAT
1 ATAAAT
76514958 CCTAAAATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 5 0.12
10 29 0.73
11 6 0.15
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.25
Consensus pattern (9 bp):
ATAAATAAA
Found at i:76514921 original size:20 final size:19
Alignment explanation
Indices: 76514898--76514957 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 19
76514888 TGAAATTCTA
76514898 AAAGATAAATACAAATAAAT
1 AAAGATAAATA-AAATAAAT
*
76514918 AAAGATAATTAAAAATAAAT
1 AAAGATAAAT-AAAATAAAT
*
76514938 AAATATAAATGAAAATAAAT
1 AAAGATAAAT-AAAATAAAT
76514958 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 34 0.97
21 1 0.03
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (19 bp):
AAAGATAAATAAAATAAAT
Found at i:76514936 original size:30 final size:31
Alignment explanation
Indices: 76514896--76514955 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
76514886 AATGAAATTC
76514896 TAAAAGATAAATACAA-ATAAAT-AAAGATAAT
1 TAAAAGATAAATA-AATATAAATGAAA-ATAAT
76514927 TAAAA-ATAAATAAATATAAATGAAAATAA
1 TAAAAGATAAATAAATATAAATGAAAATAA
76514956 ATCCTAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 2 0.07
30 17 0.63
31 8 0.30
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (31 bp):
TAAAAGATAAATAAATATAAATGAAAATAAT
Found at i:76516586 original size:30 final size:30
Alignment explanation
Indices: 76516549--76516624 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 30
76516539 CAACATCCAA
76516549 AAAAATAAAATAAAATAAAATATTAAA-T-AT
1 AAAAATAAAATAAAAT-AAA-ATTAAATTAAT
* * *
76516579 TAAAATAAAGTAAAATTAAATTAAATTAAT
1 AAAAATAAAATAAAATAAAATTAAATTAAT
76516609 AAAAATAAAAATAAAA
1 AAAAAT-AAAATAAAA
76516625 AATTGGGTTG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
28 6 0.16
29 3 0.08
30 21 0.55
31 8 0.21
ACGTcount: A:0.72, C:0.00, G:0.01, T:0.26
Consensus pattern (30 bp):
AAAAATAAAATAAAATAAAATTAAATTAAT
Found at i:76520335 original size:10 final size:10
Alignment explanation
Indices: 76520316--76520375 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
76520306 TGAAATTCTA
76520316 AAAGATAAAT
1 AAAGATAAAT
76520326 ACAA-ATAAAT
1 A-AAGATAAAT
*
76520336 AAAGATAATT
1 AAAGATAAAT
76520346 AAAGATAAAT
1 AAAGATAAAT
76520356 AAAGATAAAT
1 AAAGATAAAT
76520366 GAAA-ATAAAT
1 -AAAGATAAAT
76520376 CCTAAAATTA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:76526605 original size:46 final size:47
Alignment explanation
Indices: 76526468--76526732 Score: 165
Period size: 46 Copynumber: 5.6 Consensus size: 47
76526458 ACATTATGGG
* * *
76526468 AGCCAGTGTAAGACCATGTCTGGGACATGGCAT-TGC-ATTGAGACG-A
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTA-CGAGATGTA
* * *
76526514 GTGCCAGTGTAAGA-CATGTCCGGGACATGCATCGGCCT-CGGGATGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGCATCGG-CTACGAGATGTA
76526561 AGCCAGTGTAAGA-CATGTCTGGGACATGCATCGGCTACGAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGTA
* * * * * * * *
76526606 -GTCAGTGTAAGACCATGTTTGAGACATGGAATCAGC-ATGGATATGAGA
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTA-CGAGATG-TA
* * * *
76526654 GAGCTAGTGTAAGACCTTGTCTGGCACATGGCATCGGCCT-CGATGATGATC
1 -AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGG-CTACGA-GATG-TA
* *
76526705 A-TCAGTGTAAGACCATGTTTGGGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATG
76526733 GCATTGACAC
Statistics
Matches: 169, Mismatches: 34, Indels: 29
0.73 0.15 0.12
Matches are distributed among these distances:
44 11 0.07
45 19 0.11
46 68 0.40
47 14 0.08
48 1 0.01
49 21 0.12
50 30 0.18
51 5 0.03
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGTA
Found at i:76532783 original size:2 final size:2
Alignment explanation
Indices: 76532776--76532826 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
76532766 AATTGAAAAC
76532776 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
76532818 AG AG AG AG A
1 AG AG AG AG A
76532827 AGGATATGGC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:76536349 original size:25 final size:25
Alignment explanation
Indices: 76536319--76536369 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
76536309 ACCCTTATTC
76536319 CCCCAAATCCCAAACTTAATTTTTT
1 CCCCAAATCCCAAACTTAATTTTTT
* *
76536344 CCCCAATTCCCTAACTTAATTTTTT
1 CCCCAAATCCCAAACTTAATTTTTT
76536369 C
1 C
76536370 TTTTGTCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.27, C:0.33, G:0.00, T:0.39
Consensus pattern (25 bp):
CCCCAAATCCCAAACTTAATTTTTT
Found at i:76543922 original size:43 final size:43
Alignment explanation
Indices: 76543771--76543929 Score: 141
Period size: 43 Copynumber: 3.7 Consensus size: 43
76543761 TATGTGATAT
*
76543771 CGTGTAAGACCACGTCTAGGACGTTGACATC-A-ATTTGGTATTTA
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCGATATTT-G-A-TTA
* *
76543815 CGTGTAAGACCATGTCT-GAGACGTTGGCATCG-TATTTGATTT
1 CGTGTAAGACCACGTCTAG-GACGTTGGCATCGATATTTGATTA
* * * *
76543857 TGTGTAAGACC-CTGTTTGGGACAG-TGGCGTCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTAGGAC-GTTGGCATCGATATTTGATTA
* *
76543900 CATGTAAGACCACGTCTAGGACATTGGCAT
1 CGTGTAAGACCACGTCTAGGACGTTGGCAT
76543930 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 14, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
42 25 0.27
43 34 0.37
44 29 0.32
45 4 0.04
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTA
Found at i:76546300 original size:16 final size:16
Alignment explanation
Indices: 76546279--76546312 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
76546269 TATAATGGAT
76546279 TAACCATAA-TCAAACA
1 TAACCA-AATTCAAACA
76546295 TAACCAAATTCAAACA
1 TAACCAAATTCAAACA
76546311 TA
1 TA
76546313 GAAGTTAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 15 0.88
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.21
Consensus pattern (16 bp):
TAACCAAATTCAAACA
Found at i:76548420 original size:23 final size:23
Alignment explanation
Indices: 76548394--76548469 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
76548384 ATAAGTGCCA
76548394 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
76548417 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
76548440 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
76548463 CACTGAT
1 CACTGAT
76548470 CAATAACACT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:76548569 original size:8 final size:8
Alignment explanation
Indices: 76548556--76548584 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
76548546 ACCCGGGACT
76548556 CACTGTAA
1 CACTGTAA
76548564 CACTGTAA
1 CACTGTAA
76548572 CACTGTAA
1 CACTGTAA
76548580 CACTG
1 CACTG
76548585 GTCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:76548715 original size:18 final size:17
Alignment explanation
Indices: 76548689--76548727 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
76548679 ATTTTCCTTC
76548689 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
76548706 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
76548724 CACA
1 CACA
76548728 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:76554287 original size:52 final size:51
Alignment explanation
Indices: 76554209--76554314 Score: 203
Period size: 52 Copynumber: 2.1 Consensus size: 51
76554199 TAACACTTCA
76554209 GTTTGTTGAGGAGCTATGGGAACAGCTTGAGGAATAGGAGGGGGCGGAGGAG
1 GTTTGTTGAGGAGCTATGGGAACAGCTTGAGGAATAGGA-GGGGCGGAGGAG
76554261 GTTTGTTGAGGAGCTATGGGAACAGCTTGAGGAATAGGAGGGGCGGAGGAG
1 GTTTGTTGAGGAGCTATGGGAACAGCTTGAGGAATAGGAGGGGCGGAGGAG
76554312 GTT
1 GTT
76554315 GAGCATTAGG
Statistics
Matches: 54, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 15 0.28
52 39 0.72
ACGTcount: A:0.25, C:0.08, G:0.47, T:0.21
Consensus pattern (51 bp):
GTTTGTTGAGGAGCTATGGGAACAGCTTGAGGAATAGGAGGGGCGGAGGAG
Found at i:76575092 original size:55 final size:54
Alignment explanation
Indices: 76575005--76575110 Score: 162
Period size: 55 Copynumber: 1.9 Consensus size: 54
76574995 TCTTTACCAT
*
76575005 ATAAGGGCAAATAGTCATTTTACGGCACTAAGGGCAAAACAG-TCAGTTTACAAC
1 ATAAGGGCAAACAGTCATTTTACGGCACTAAGGGCAAAACAGCTCA-TTTACAAC
76575059 ATAAGGGCAAAGCAGTCATTTTAC-GCACATAAGGGCAAAACAGCTCATTTAC
1 ATAAGGGCAAA-CAGTCATTTTACGGCAC-TAAGGGCAAAACAGCTCATTTAC
76575111 CATCAAGGCT
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
54 15 0.31
55 30 0.62
56 3 0.06
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (54 bp):
ATAAGGGCAAACAGTCATTTTACGGCACTAAGGGCAAAACAGCTCATTTACAAC
Found at i:76575109 original size:28 final size:27
Alignment explanation
Indices: 76574997--76575112 Score: 130
Period size: 28 Copynumber: 4.3 Consensus size: 27
76574987 AGCTCAAATC
* *
76574997 TTTACCATATAAGGGC-AAATAGTCAT
1 TTTACCACATAAGGGCAAAACAGTCAT
*
76575023 TTTACGGCAC-TAAGGGCAAAACAGTCAG
1 TTTAC--CACATAAGGGCAAAACAGTCAT
* *
76575051 TTTACAACATAAGGGCAAAGCAGTCAT
1 TTTACCACATAAGGGCAAAACAGTCAT
76575078 TTTACGCACATAAGGGCAAAACAGCTCA-
1 TTTAC-CACATAAGGGCAAAACAG-TCAT
76575106 TTTACCA
1 TTTACCA
76575113 TCAAGGCTAA
Statistics
Matches: 76, Mismatches: 8, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
26 7 0.09
27 30 0.39
28 36 0.47
29 3 0.04
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (27 bp):
TTTACCACATAAGGGCAAAACAGTCAT
Found at i:76588783 original size:45 final size:45
Alignment explanation
Indices: 76588666--76588789 Score: 167
Period size: 45 Copynumber: 2.8 Consensus size: 45
76588656 TCGATGTCCC
* * * * * *
76588666 AGACATGGTCTTACACGTAACCACATAGATCAATTCCAACGTCCT
1 AGACATGGTCTTACACGAAAACACATATATCGATGCCAACCTCCT
*
76588711 AGACGTGGTCTTACACGAAAACACATATATCGATGCCAACCTCCT
1 AGACATGGTCTTACACGAAAACACATATATCGATGCCAACCTCCT
* *
76588756 AGACCTGGTCTTACACGAAAACACATATCTCGAT
1 AGACATGGTCTTACACGAAAACACATATATCGAT
76588790 CCTATGGTTT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 70 1.00
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (45 bp):
AGACATGGTCTTACACGAAAACACATATATCGATGCCAACCTCCT
Found at i:76590244 original size:50 final size:50
Alignment explanation
Indices: 76590185--76590284 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
76590175 ACTTGTGCGA
*
76590185 ATATTTTGTGATCAAGTGGTGAGTATTGATTCTTTGTAAATCTTCTCCTC
1 ATATTTTGTGATCAAGTGGTGAGTATTGATTCTTTGTAAATATTCTCCTC
76590235 ATATTTTGTGATCAAGTGGTGAGTATTGATTCTTTGTAAATATTCTCCTC
1 ATATTTTGTGATCAAGTGGTGAGTATTGATTCTTTGTAAATATTCTCCTC
76590285 CCTGTTGGCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.46
Consensus pattern (50 bp):
ATATTTTGTGATCAAGTGGTGAGTATTGATTCTTTGTAAATATTCTCCTC
Found at i:76591060 original size:34 final size:34
Alignment explanation
Indices: 76591022--76591088 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
76591012 TGGTGTACAC
*
76591022 ATAGTTTTATGTAAATTTGGGCTAAATGCGCCAT
1 ATAGTTTTATCTAAATTTGGGCTAAATGCGCCAT
*
76591056 ATAGTTTTATCTAAATTTGGTCTAAATGCGCCA
1 ATAGTTTTATCTAAATTTGGGCTAAATGCGCCA
76591089 CATGAGCGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (34 bp):
ATAGTTTTATCTAAATTTGGGCTAAATGCGCCAT
Found at i:76591401 original size:27 final size:27
Alignment explanation
Indices: 76591326--76591386 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
76591316 CCCCTAATTT
* *
76591326 GTAAAATAACCGTAATACCCTTGTAGG
1 GTAAAATGACTGTAATACCCTTGTAGG
*
76591353 GTAAAATGACTGTAATACCCTTGTATG
1 GTAAAATGACTGTAATACCCTTGTAGG
76591380 GTAAAAT
1 GTAAAAT
76591387 TACGATTATG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (27 bp):
GTAAAATGACTGTAATACCCTTGTAGG
Found at i:76591560 original size:27 final size:25
Alignment explanation
Indices: 76591529--76591603 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 25
76591519 AGGAAGTATT
*
76591529 ATACTAGTGACTATGCCACATTCACTG
1 ATACT-GTGGCTATGCCACATT-ACTG
*
76591556 TTACTGTTGGCTATGCCACAATTACTG
1 ATACTG-TGGCTATGCCAC-ATTACTG
76591583 ATACTGGTGGCT-TGCCACATT
1 ATACT-GTGGCTATGCCACATT
76591604 TACTATTTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
25 3 0.07
26 7 0.17
27 28 0.67
28 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (25 bp):
ATACTGTGGCTATGCCACATTACTG
Found at i:76591819 original size:28 final size:28
Alignment explanation
Indices: 76591774--76591863 Score: 92
Period size: 33 Copynumber: 3.1 Consensus size: 28
76591764 GTATTGATAT
* * *
76591774 TGTATTGGGCTTAGGCCCACACTGTTAC
1 TGTATAGGGCTAAGGCCCAGACTGTTAC
*
76591802 TGTATAGGGCTAAAGCCCAGATTGTTCTGTTAC
1 TGTATAGGGCTAAGGCCCAGA-----CTGTTAC
76591835 TGTATAGGGCTAAGGCCCAGACTG-TAC
1 TGTATAGGGCTAAGGCCCAGACTGTTAC
76591862 TG
1 TG
76591864 ATACTGGATA
Statistics
Matches: 52, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
27 5 0.10
28 20 0.38
33 27 0.52
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (28 bp):
TGTATAGGGCTAAGGCCCAGACTGTTAC
Found at i:76591837 original size:33 final size:33
Alignment explanation
Indices: 76591794--76591878 Score: 125
Period size: 33 Copynumber: 2.6 Consensus size: 33
76591784 TTAGGCCCAC
*
76591794 ACTGTTACTGTATAGGGCTAAAGCCCAGATTGT
1 ACTGTTACTGTATAGGGCTAAAGCCCAGACTGT
* *
76591827 TCTGTTACTGTATAGGGCTAAGGCCCAGACTGT
1 ACTGTTACTGTATAGGGCTAAAGCCCAGACTGT
* *
76591860 ACTGATACTGGATAGGGCT
1 ACTGTTACTGTATAGGGCT
76591879 CAGGTCTAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (33 bp):
ACTGTTACTGTATAGGGCTAAAGCCCAGACTGT
Found at i:76591890 original size:33 final size:34
Alignment explanation
Indices: 76591794--76591897 Score: 113
Period size: 33 Copynumber: 3.1 Consensus size: 34
76591784 TTAGGCCCAC
* * * *
76591794 ACTGTTACTGTATAGGGCTAAAGCCCAGATTGTT
1 ACTGATACTGGATAGGGCTAAGGCCCAGACTGTT
* *
76591828 -CTGTTACTGTATAGGGCTAAGGCCCAGACTG-T
1 ACTGATACTGGATAGGGCTAAGGCCCAGACTGTT
* * *
76591860 ACTGATACTGGATAGGGCTCAGGTCTAGACTGTT
1 ACTGATACTGGATAGGGCTAAGGCCCAGACTGTT
76591894 ACTG
1 ACTG
76591898 CATGCGTTTT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
32 1 0.02
33 55 0.90
34 5 0.08
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (34 bp):
ACTGATACTGGATAGGGCTAAGGCCCAGACTGTT
Found at i:76595378 original size:18 final size:18
Alignment explanation
Indices: 76595355--76595396 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 18
76595345 CGATGGGTCG
76595355 CAATGGGCCATGTGGGCC
1 CAATGGGCCATGTGGGCC
*
76595373 CAAT-GGCCTTGTGGGCC
1 CAATGGGCCATGTGGGCC
76595390 CACATGG
1 CA-ATGG
76595397 ATAACTCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 14 0.67
18 6 0.29
19 1 0.05
ACGTcount: A:0.17, C:0.29, G:0.36, T:0.19
Consensus pattern (18 bp):
CAATGGGCCATGTGGGCC
Found at i:76596439 original size:17 final size:19
Alignment explanation
Indices: 76596413--76596449 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
76596403 AACCGATCCG
76596413 ATACGCTCT-AT-AATCTC
1 ATACGCTCTAATAAATCTC
*
76596430 ATACGGTCTAATAAATCTC
1 ATACGCTCTAATAAATCTC
76596449 A
1 A
76596450 GACTCAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 2 0.12
19 7 0.41
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (19 bp):
ATACGCTCTAATAAATCTC
Found at i:76603823 original size:38 final size:38
Alignment explanation
Indices: 76603673--76603845 Score: 206
Period size: 38 Copynumber: 4.5 Consensus size: 38
76603663 AGCTTAAAGA
* *
76603673 CCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TCGTGCTGGTATTATATCCGGGTTAAAT
*
76603711 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
76603749 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
* * * * *
76603787 CCTGCA-GCCTAGTGCTGGTATTATATCTGAGCTTAAAGT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCG-GGTTAAA-T
* * *
76603826 CCTGCAGGTTTTGTGCTGGT
1 CCCGCAGGCTTCGTGCTGGT
76603846 GACTGGATTC
Statistics
Matches: 119, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
37 21 0.18
38 81 0.68
39 7 0.06
40 10 0.08
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
Found at i:76610425 original size:14 final size:16
Alignment explanation
Indices: 76610406--76610437 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
76610396 TCGATATCTT
76610406 TTTGCAT-TCA-TGCA
1 TTTGCATCTCATTGCA
76610420 TTTGCATCTCATTGCA
1 TTTGCATCTCATTGCA
76610436 TT
1 TT
76610438 ATATGCATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 3 0.19
16 6 0.38
ACGTcount: A:0.19, C:0.22, G:0.12, T:0.47
Consensus pattern (16 bp):
TTTGCATCTCATTGCA
Found at i:76619389 original size:90 final size:90
Alignment explanation
Indices: 76618544--76619373 Score: 1254
Period size: 90 Copynumber: 9.2 Consensus size: 90
76618534 ATCGAGGAAG
* *
76618544 CAGATTTGGCGTTTCTGTATT-GACGGGGAGCAGATTGAAGATAGTAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
76618608 TTACATCGAAGCAGATCGAAGATGA
66 TTACATCGAAGCAGATCGAAGATGA
* * * * *
76618633 CAGATTTTGCATCTTTATATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTTGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
*
76618698 TTACATCGAAGCAGATAGAAGATGA
66 TTACATCGAAGCAGATCGAAGATGA
76618723 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGA-CTGAAGATAGTAGATCTGACATTCGTGTG
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATC-GAAGATAGTAGATCTGACATTCGTGTG
*
76618787 TTTACATCGAAGTAGATCGAAGATGA
65 TTTACATCGAAGCAGATCGAAGATGA
* *
76618813 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGACCGAAGATAGTAGATCTGACATTCATGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
76618878 TTACATCGAAGCAGATCGAAGATGA
66 TTACATCGAAGCAGATCGAAGATGA
* * * * * **
76618903 TAGATTTGGCATCTCTGTATTAGATGGGGAACAGATCGAAGATAGTAGATTTGGTATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
* *
76618968 TGACATCGAAGTAGATCGAAGATGA
66 TTACATCGAAGCAGATCGAAGATGA
* * *
76618993 TAGATTTGGCGTCTCTGTATTATACGGGGAGCAGATCGAAGATAGTAGATCTGACATTTGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
76619058 TTACATCGAAGCAGATCGAAGATGA
66 TTACATCGAAGCAGATCGAAGATGA
* * *
76619083 CAGATTTGGTGTCTCTGTATTATACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCATGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
*
76619148 TTACATCGAAGCAAATCGAAGATGA
66 TTACATCGAAGCAGATCGAAGATGA
* * *
76619173 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAAATCGAAGATAGTAGATCTGATATTCATGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
76619238 TTACATCGAAGCAGATC-ACAGATGA
66 TTACATCGAAGCAGATCGA-AGATGA
* * * * ** *
76619263 TAGATTTGGCGTCTCTGTTTTAGACCGGGAGCAGATCGAAGATAGCAGATCAAACATTTGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
*
76619328 TTACATTGAAGCAGATCGAAGAT-A
66 TTACATCGAAGCAGATCGAAGATGA
*
76619352 GCAGATTTGGCGTCTCTATATT
1 -CAGATTTGGCGTCTCTGTATT
76619374 TGATAAGGAG
Statistics
Matches: 673, Mismatches: 62, Indels: 11
0.90 0.08 0.01
Matches are distributed among these distances:
89 19 0.03
90 652 0.97
91 2 0.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (90 bp):
CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
TTACATCGAAGCAGATCGAAGATGA
Found at i:76620452 original size:25 final size:25
Alignment explanation
Indices: 76620424--76620477 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
76620414 ATTTTAATCC
* *
76620424 TTTTAATTTTTTTATAAT-TTATTTA
1 TTTTAAATATTTTA-AATATTATTTA
76620449 TTTTAAATATTTTAAATATTATTTA
1 TTTTAAATATTTTAAATATTATTTA
76620474 TTTT
1 TTTT
76620478 TACTATAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 3 0.12
25 23 0.88
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (25 bp):
TTTTAAATATTTTAAATATTATTTA
Found at i:76620535 original size:17 final size:17
Alignment explanation
Indices: 76620509--76620577 Score: 70
Period size: 17 Copynumber: 3.9 Consensus size: 17
76620499 ATGTAAAAAA
76620509 TTATTATATATATTATTT
1 TTATT-TATATATTATTT
76620527 TTATTTATATATTATTT
1 TTATTTATATATTATTT
*
76620544 ATATATTT-TATTTATATATT
1 -T-TATTTATATAT-TAT-TT
76620564 TTA-TTATATATTAT
1 TTATTTATATATTAT
76620578 ATCATTTTAC
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
17 17 0.39
18 16 0.36
19 9 0.20
20 2 0.05
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTATTTATATATTATTT
Found at i:76620554 original size:13 final size:13
Alignment explanation
Indices: 76620525--76620575 Score: 81
Period size: 13 Copynumber: 4.2 Consensus size: 13
76620515 TATATATTAT
76620525 TTTTATTTATATA
1 TTTTATTTATATA
76620538 --TTATTTATATA
1 TTTTATTTATATA
76620549 TTTTATTTATATA
1 TTTTATTTATATA
76620562 TTTTA-TTATATA
1 TTTTATTTATATA
76620574 TT
1 TT
76620576 ATATCATTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
11 11 0.31
12 9 0.25
13 16 0.44
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTATTTATATA
Found at i:76620630 original size:12 final size:12
Alignment explanation
Indices: 76620508--76620637 Score: 93
Period size: 12 Copynumber: 11.4 Consensus size: 12
76620498 TATGTAAAAA
76620508 ATTAT-TATATAT
1 ATTATATAT-TAT
*
76620520 ATTAT-TTTTAT
1 ATTATATATTAT
76620531 -TTATATATTAT
1 ATTATATATTAT
*
76620542 -TTATATATTTT
1 ATTATATATTAT
*
76620553 ATTTATATATTTT
1 A-TTATATATTAT
76620566 ATTATATATTAT
1 ATTATATATTAT
*
76620578 ATCAT-T-TTACT
1 ATTATATATTA-T
76620589 A-TATATATTAT
1 ATTATATATTAT
*
76620600 -TCATTATATTAT
1 ATTA-TATATTAT
*
76620612 -TT-T-TATTCT
1 ATTATATATTAT
76620621 ATTATATATTAT
1 ATTATATATTAT
76620633 ATTAT
1 ATTAT
76620638 TTTGTTTTTA
Statistics
Matches: 97, Mismatches: 10, Indels: 22
0.75 0.08 0.17
Matches are distributed among these distances:
9 5 0.05
10 12 0.12
11 25 0.26
12 43 0.44
13 12 0.12
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (12 bp):
ATTATATATTAT
Found at i:76620813 original size:22 final size:20
Alignment explanation
Indices: 76620772--76620814 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
76620762 CCTATTTAAC
*
76620772 ATATTAATATTTTATAATAT
1 ATATTAATATTATATAATAT
*
76620792 ATATTAAGTTATTATATCATAT
1 ATATTAA--TATTATATAATAT
76620814 A
1 A
76620815 GTATATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
22 12 0.63
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (20 bp):
ATATTAATATTATATAATAT
Found at i:76622889 original size:56 final size:56
Alignment explanation
Indices: 76622824--76623004 Score: 265
Period size: 56 Copynumber: 3.2 Consensus size: 56
76622814 GCCCAGACAG
*
76622824 GGTCTTACTCACACACATAAATCAGAATCACATATCAATGTCAATGTATTAAACGT
1 GGTCTTACTCACACACATATATCAGAATCACATATCAATGTCAATGTATTAAACGT
* *
76622880 GGTCTTACTCACACACATATATCAGAATCACATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCACACACATATATCAGAATCACATATCAATGTCAATGTATTAAACGT
** * * *
76622936 GGTCTTACTCGTACACATATATCAAAATCACATATCAAT-TCCAACGTATTAAACAT
1 GGTCTTACTCACACACATATATCAGAATCACATATCAATGT-CAATGTATTAAACGT
*
76622992 GGTCTTACACACA
1 GGTCTTACTCACA
76623005 TATATCGATG
Statistics
Matches: 111, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
56 111 1.00
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCAGAATCACATATCAATGTCAATGTATTAAACGT
Found at i:76625129 original size:40 final size:40
Alignment explanation
Indices: 76625074--76625255 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
76625064 GATGATAACG
*
76625074 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-TCC
*
76625114 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-ATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
*
76625153 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
* **
76625193 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
76625233 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
76625256 AGCGAGTAGC
Statistics
Matches: 135, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
39 36 0.27
40 99 0.73
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
Found at i:76625205 original size:79 final size:80
Alignment explanation
Indices: 76625074--76625287 Score: 294
Period size: 79 Copynumber: 2.7 Consensus size: 80
76625064 GATGATAACG
* *
76625074 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGT
* ** *
76625138 GCTAGTTACTA-ATTC
65 GCGAACTACTATATCC
76625153 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
76625218 CGAACTACTATATCC
66 CGAACTACTATATCC
* * *
76625233 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT-C-GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
76625288 TACTTGGTTT
Statistics
Matches: 123, Mismatches: 9, Indels: 7
0.88 0.06 0.05
Matches are distributed among these distances:
78 14 0.11
79 71 0.58
80 38 0.31
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
CGAACTACTATATCC
Found at i:76625269 original size:40 final size:39
Alignment explanation
Indices: 76625074--76625287 Score: 283
Period size: 40 Copynumber: 5.4 Consensus size: 39
76625064 GATGATAACG
*
76625074 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-TCC
* *
76625114 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-ATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCC
76625153 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCC
*
76625193 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATATCC
*
76625233 GGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATAT-C
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATATCC
* *
76625272 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
76625288 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 8, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
38 14 0.09
39 40 0.25
40 106 0.65
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCC
Found at i:76633168 original size:27 final size:27
Alignment explanation
Indices: 76633138--76633193 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
76633128 CATTTGTGCT
76633138 AGTGACTAATTCCGGGCTAAGTCCCGA
1 AGTGACTAATTCCGGGCTAAGTCCCGA
*
76633165 AGTGACTAATTCTGGGCTAAGTCCCGA
1 AGTGACTAATTCCGGGCTAAGTCCCGA
76633192 AG
1 AG
76633194 GCATTTGTGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (27 bp):
AGTGACTAATTCCGGGCTAAGTCCCGA
Found at i:76633220 original size:40 final size:40
Alignment explanation
Indices: 76633165--76633240 Score: 152
Period size: 40 Copynumber: 1.9 Consensus size: 40
76633155 TAAGTCCCGA
76633165 AGTGACTAATTCTGGGCTAAGTCCCGAAGGCATTTGTGCT
1 AGTGACTAATTCTGGGCTAAGTCCCGAAGGCATTTGTGCT
76633205 AGTGACTAATTCTGGGCTAAGTCCCGAAGGCATTTG
1 AGTGACTAATTCTGGGCTAAGTCCCGAAGGCATTTG
76633241 AGCGAGTAGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
AGTGACTAATTCTGGGCTAAGTCCCGAAGGCATTTGTGCT
Found at i:76633567 original size:12 final size:12
Alignment explanation
Indices: 76633550--76633575 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76633540 AAAATAGGGC
76633550 TTTAGCGGCGTT
1 TTTAGCGGCGTT
76633562 TTTAGCGGCGTT
1 TTTAGCGGCGTT
76633574 TT
1 TT
76633576 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:76633693 original size:41 final size:41
Alignment explanation
Indices: 76633631--76633768 Score: 210
Period size: 41 Copynumber: 3.4 Consensus size: 41
76633621 GTTTTAGTAA
*
76633631 AAAAACGCCGCGAAAAA-TAGAGCATTAGCGGCG-TTTTGCC
1 AAAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTG-C
76633671 AAAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGGC
1 AAAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTT-GC
* *
76633713 -AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGC
76633753 AAAAACGCCGCTAAAA
1 AAAAACGCCGCTAAAA
76633769 GTCATATAAC
Statistics
Matches: 91, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
40 17 0.19
41 68 0.75
42 5 0.05
43 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (41 bp):
AAAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGC
Found at i:76633940 original size:7 final size:7
Alignment explanation
Indices: 76633925--76634022 Score: 61
Period size: 7 Copynumber: 13.4 Consensus size: 7
76633915 TTAATTATCA
*
76633925 TTATAGT
1 TTATGGT
76633932 TTATGGT
1 TTATGGT
76633939 TTATGGT
1 TTATGGT
* *
76633946 TTAAGAT
1 TTATGGT
*
76633953 ATATGGT
1 TTATGGT
*
76633960 TTAAGGT
1 TTATGGT
*
76633967 TTAAGGT
1 TTATGGT
76633974 TTATGAGT
1 TTATG-GT
76633982 TAACTATGGT
1 T---TATGGT
* *
76633992 TTAAGAT
1 TTATGGT
*
76633999 ATATGGT
1 TTATGGT
*
76634006 TTAGGGT
1 TTATGGT
*
76634013 TTAAGGT
1 TTATGGT
76634020 TTA
1 TTA
76634023 GGAGTTAACT
Statistics
Matches: 70, Mismatches: 17, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
7 60 0.86
8 3 0.04
10 3 0.04
11 4 0.06
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.47
Consensus pattern (7 bp):
TTATGGT
Found at i:76633947 original size:14 final size:14
Alignment explanation
Indices: 76633925--76634022 Score: 70
Period size: 14 Copynumber: 6.7 Consensus size: 14
76633915 TTAATTATCA
* *
76633925 TTATAGTTTATGGT
1 TTATGGTTTAAGGT
*
76633939 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
*
76633953 ATATGGTTTAAGGT
1 TTATGGTTTAAGGT
* *
76633967 TTAAGGTTTATGAGT
1 TTATGGTTTAAG-GT
*
76633982 TAACTATGGTTTAAGAT
1 T---TATGGTTTAAGGT
* *
76633999 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
*
76634013 TTAAGGTTTA
1 TTATGGTTTA
76634023 GGAGTTAACT
Statistics
Matches: 64, Mismatches: 16, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
14 51 0.80
15 3 0.05
17 1 0.02
18 9 0.14
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.47
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:76633957 original size:21 final size:21
Alignment explanation
Indices: 76633933--76634017 Score: 98
Period size: 21 Copynumber: 3.9 Consensus size: 21
76633923 CATTATAGTT
76633933 TATGGTTTATGGTTTAAGATA
1 TATGGTTTATGGTTTAAGATA
* * *
76633954 TATGGTTTAAGGTTTAAGGTT
1 TATGGTTTATGGTTTAAGATA
76633975 TATGAGTTAACTATGGTTTAAGATA
1 TATG-GTT---TATGGTTTAAGATA
*
76634000 TATGGTTTAGGGTTTAAG
1 TATGGTTTATGGTTTAAG
76634018 GTTTAGGAGT
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
21 32 0.60
22 3 0.06
24 3 0.06
25 15 0.28
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.45
Consensus pattern (21 bp):
TATGGTTTATGGTTTAAGATA
Found at i:76633992 original size:46 final size:46
Alignment explanation
Indices: 76633940--76634033 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
76633930 GTTTATGGTT
*
76633940 TATGGTTTAAGATATATGGTTTAAGGTTTAAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATGGTTTAAGGTTTAAGGTTTAGGAGTTAAC
*
76633986 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGGTTTAAGATATATGGTTTAAGGTTTAAGGTTTAGGAGTTAAC
76634032 TA
1 TA
76634034 GTATTTGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.30, C:0.02, G:0.26, T:0.43
Consensus pattern (46 bp):
TATGGTTTAAGATATATGGTTTAAGGTTTAAGGTTTAGGAGTTAAC
Found at i:76634123 original size:21 final size:21
Alignment explanation
Indices: 76634081--76634154 Score: 64
Period size: 21 Copynumber: 3.5 Consensus size: 21
76634071 TTATGATTAA
*
76634081 TTAGGGTTTAATGGT-T-AGGG
1 TTAGAGTTTAA-GGTGTAAGGG
76634101 TTAGAGTTTAAGGTGTAAGGG
1 TTAGAGTTTAAGGTGTAAGGG
* * *
76634122 TTTGGGGTTAAGG-GTTAAGGG
1 TTAGAGTTTAAGGTG-TAAGGG
76634143 TTTAGAGTTTAA
1 -TTAGAGTTTAA
76634155 TGTTTATGGG
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
19 3 0.07
20 12 0.28
21 20 0.47
22 8 0.19
ACGTcount: A:0.24, C:0.00, G:0.38, T:0.38
Consensus pattern (21 bp):
TTAGAGTTTAAGGTGTAAGGG
Found at i:76634154 original size:43 final size:42
Alignment explanation
Indices: 76634082--76634192 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 42
76634072 TATGATTAAT
* * *
76634082 TAGGGTTTAATGGTTAGGG-TTAGAGTTTAAGGTGTAAGGGT
1 TAGGGGTTAAGGGTTAGGGTTTAGAGTTTAAGGTGTAAGGGA
* * * *
76634123 TTGGGGTTAAGGGTTAAGGGTTTAGAGTTTAATGTTTATGGGA
1 TAGGGGTTAAGGGTT-AGGGTTTAGAGTTTAAGGTGTAAGGGA
76634166 TAGGGGTTAAGAGGTTTAGGGTTTAGA
1 TAGGGGTTAAG-GG-TTAGGGTTTAGA
76634193 TTAATTAGTA
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
41 12 0.21
42 4 0.07
43 28 0.48
44 12 0.21
45 2 0.03
ACGTcount: A:0.24, C:0.00, G:0.39, T:0.37
Consensus pattern (42 bp):
TAGGGGTTAAGGGTTAGGGTTTAGAGTTTAAGGTGTAAGGGA
Found at i:76634287 original size:115 final size:115
Alignment explanation
Indices: 76634163--76634404 Score: 475
Period size: 115 Copynumber: 2.1 Consensus size: 115
76634153 AATGTTTATG
*
76634163 GGATAGGGGTTAAGAGGTTTAGGGTTTAGATTAATTAGTATTTTTTAATTTATATATTAAATGAT
1 GGATAGGGGTTAAGAGGTTTAGGGTTTAAATTAATTAGTATTTTTTAATTTATATATTAAATGAT
76634228 TTCTTATATAATTGTAAAAGAGATACATTACACCAAAACAAGTTTTAAGA
66 TTCTTATATAATTGTAAAAGAGATACATTACACCAAAACAAGTTTTAAGA
76634278 GGATAGGGGTTAAGAGGTTTAGGGTTTAAATTAATTAGTATTTTTTAATTTATATATTAAATGAT
1 GGATAGGGGTTAAGAGGTTTAGGGTTTAAATTAATTAGTATTTTTTAATTTATATATTAAATGAT
76634343 TTCTTATATAATTGTAAAAGAGATACATTACACCAAAACAAGTTTTAAGA
66 TTCTTATATAATTGTAAAAGAGATACATTACACCAAAACAAGTTTTAAGA
76634393 GGATAGGGGTTA
1 GGATAGGGGTTA
76634405 GGCGTTAAGG
Statistics
Matches: 126, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
115 126 1.00
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (115 bp):
GGATAGGGGTTAAGAGGTTTAGGGTTTAAATTAATTAGTATTTTTTAATTTATATATTAAATGAT
TTCTTATATAATTGTAAAAGAGATACATTACACCAAAACAAGTTTTAAGA
Found at i:76634418 original size:22 final size:22
Alignment explanation
Indices: 76634387--76634450 Score: 110
Period size: 22 Copynumber: 2.9 Consensus size: 22
76634377 AAAACAAGTT
*
76634387 TTAAGAGGATAGGGGTTAGGCG
1 TTAAGGGGATAGGGGTTAGGCG
*
76634409 TTAAGGGGATAAGGGTTAGGCG
1 TTAAGGGGATAGGGGTTAGGCG
76634431 TTAAGGGGATAGGGGTTAGG
1 TTAAGGGGATAGGGGTTAGG
76634451 GGTTTATGGT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.27, C:0.03, G:0.47, T:0.23
Consensus pattern (22 bp):
TTAAGGGGATAGGGGTTAGGCG
Found at i:76634444 original size:7 final size:7
Alignment explanation
Indices: 76634396--76634454 Score: 55
Period size: 7 Copynumber: 8.1 Consensus size: 7
76634386 TTTAAGAGGA
76634396 TAGGGGT
1 TAGGGGT
*
76634403 TAGGCGT
1 TAGGGGT
*
76634410 TAAGGGGA
1 T-AGGGGT
*
76634418 TAAGGGT
1 TAGGGGT
*
76634425 TAGGCGT
1 TAGGGGT
*
76634432 TAAGGGGA
1 T-AGGGGT
76634440 TAGGGGT
1 TAGGGGT
76634447 TAGGGGT
1 TAGGGGT
76634454 T
1 T
76634455 TATGGTTTAT
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
7 30 0.75
8 10 0.25
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.25
Consensus pattern (7 bp):
TAGGGGT
Found at i:76634461 original size:7 final size:7
Alignment explanation
Indices: 76634451--76634554 Score: 50
Period size: 7 Copynumber: 14.7 Consensus size: 7
76634441 AGGGGTTAGG
76634451 GGTTTAT
1 GGTTTAT
76634458 GGTTTAT
1 GGTTTAT
*
76634465 GAGTTAAT
1 G-GTTTAT
** *
76634473 ATTTTAA
1 GGTTTAT
*
76634480 AGTTTAT
1 GGTTTAT
*
76634487 GGATTAT
1 GGTTTAT
76634494 GGTTTAT
1 GGTTTAT
*
76634501 GGATTAT
1 GGTTTAT
*
76634508 -GTGTTAG
1 GGT-TTAT
*
76634515 GGTTTAA
1 GGTTTAT
*
76634522 GGTTTAG
1 GGTTTAT
*
76634529 GGGTTAT
1 GGTTTAT
* *
76634536 GTGTTAAG
1 G-GTTTAT
76634544 GGTTTA-
1 GGTTTAT
76634550 GGTTT
1 GGTTT
76634555 TAAGGGTTAA
Statistics
Matches: 72, Mismatches: 21, Indels: 9
0.71 0.21 0.09
Matches are distributed among these distances:
6 6 0.08
7 55 0.76
8 11 0.15
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.48
Consensus pattern (7 bp):
GGTTTAT
Found at i:76634498 original size:14 final size:14
Alignment explanation
Indices: 76634481--76634508 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76634471 ATATTTTAAA
76634481 GTTTATGGATTATG
1 GTTTATGGATTATG
76634495 GTTTATGGATTATG
1 GTTTATGGATTATG
76634509 TGTTAGGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (14 bp):
GTTTATGGATTATG
Found at i:76634535 original size:28 final size:28
Alignment explanation
Indices: 76634494--76634563 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
76634484 TATGGATTAT
* *
76634494 GGTTTATGGATTATGTGTT-AGGGTTTAA
1 GGTTTAAGGGTTATGTGTTAAGGGTTT-A
*
76634522 GGTTTAGGGGTTATGTGTTAAGGGTTTA
1 GGTTTAAGGGTTATGTGTTAAGGGTTTA
76634550 GGTTTTAAGGGTTA
1 GG-TTTAAGGGTTA
76634564 AGGGATATGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 20 0.54
29 17 0.46
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (28 bp):
GGTTTAAGGGTTATGTGTTAAGGGTTTA
Found at i:76634545 original size:15 final size:15
Alignment explanation
Indices: 76634504--76634562 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 15
76634494 GGTTTATGGA
76634504 TTATGTGTT-AGGGT
1 TTATGTGTTAAGGGT
* * *
76634518 TTAAG-GTTTAGGGG
1 TTATGTGTTAAGGGT
76634532 TTATGTGTTAAGGGT
1 TTATGTGTTAAGGGT
* *
76634547 TTAGGTTTTAAGGGT
1 TTATGTGTTAAGGGT
76634562 T
1 T
76634563 AAGGGATATG
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
13 3 0.08
14 12 0.33
15 21 0.58
ACGTcount: A:0.19, C:0.00, G:0.36, T:0.46
Consensus pattern (15 bp):
TTATGTGTTAAGGGT
Found at i:76634557 original size:36 final size:36
Alignment explanation
Indices: 76634511--76634600 Score: 101
Period size: 36 Copynumber: 2.5 Consensus size: 36
76634501 GGATTATGTG
* * *
76634511 TTAGGGTTTAAGGTTTAGGGGTTATGTGTTAAGGGT
1 TTAGGATTTAAGGTTTAGGGGATATGGGTTAAGGGT
* * * *
76634547 TTAGGTTTTAAGGGTTAAGGGATATGGGTTATGGGT
1 TTAGGATTTAAGGTTTAGGGGATATGGGTTAAGGGT
76634583 TTAGGATTT-AGGATTTAG
1 TTAGGATTTAAGG-TTTAG
76634601 AGATAAAGGT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
35 3 0.07
36 41 0.93
ACGTcount: A:0.22, C:0.00, G:0.37, T:0.41
Consensus pattern (36 bp):
TTAGGATTTAAGGTTTAGGGGATATGGGTTAAGGGT
Found at i:76634892 original size:76 final size:74
Alignment explanation
Indices: 76634809--76635026 Score: 310
Period size: 76 Copynumber: 3.0 Consensus size: 74
76634799 TGGCTTCTAA
76634809 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTAAAAAAACACCACA
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTAAAAAAACACCACA
76634874 AAAAACACT
66 AAAAACACT
* *
76634883 ATTATATAACAAATAAAAATAAATATGAAAATTAAAAGATTAGTGGCG--TTTAAAAAAACGCCA
1 A-T-TATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTAAAAAAACACCA
76634946 CAAAAAACAC-
64 CAAAAAACACT
* *
76634956 --TAT----AATAAAAATAAATATGAAAATTAAGAGATTAGTGGCCTTTTTTTAAAAAACACCAC
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGG-CGTTTTTAAAAAAACACCAC
76635015 AAAAAACACT
65 AAAAAACACT
76635025 AT
1 AT
76635027 GAAAACGACA
Statistics
Matches: 130, Mismatches: 6, Indels: 19
0.84 0.04 0.12
Matches are distributed among these distances:
65 34 0.26
66 1 0.01
68 23 0.18
69 3 0.02
74 25 0.19
75 1 0.01
76 43 0.33
ACGTcount: A:0.55, C:0.11, G:0.09, T:0.25
Consensus pattern (74 bp):
ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTAAAAAAACACCACA
AAAAACACT
Found at i:76634965 original size:65 final size:67
Alignment explanation
Indices: 76634894--76635026 Score: 207
Period size: 65 Copynumber: 2.0 Consensus size: 67
76634884 TTATATAACA
*
76634894 AATAAAAATAAATATGAAAATTAAAAGATTAGTGG-C-GTTTAAAAAAACGCCACAAAAAACACT
1 AATAAAAATAAATATGAAAATTAAAAGATTAGTGGCCTGTTTAAAAAAACACCACAAAAAACACT
76634957 AT
66 AT
* * *
76634959 AATAAAAATAAATATGAAAATTAAGAGATTAGTGGCCTTTTTTTAAAAAACACCACAAAAAACAC
1 AATAAAAATAAATATGAAAATTAAAAGATTAGTGGCC-TGTTTAAAAAAACACCACAAAAAACAC
76635024 TAT
65 TAT
76635027 GAAAACGACA
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
65 34 0.56
66 1 0.02
68 26 0.43
ACGTcount: A:0.55, C:0.11, G:0.10, T:0.24
Consensus pattern (67 bp):
AATAAAAATAAATATGAAAATTAAAAGATTAGTGGCCTGTTTAAAAAAACACCACAAAAAACACT
AT
Found at i:76637165 original size:23 final size:22
Alignment explanation
Indices: 76637110--76637165 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
76637100 CTATTACGTA
*
76637110 GATATAACTGC-TTGGAGACAC
1 GATATAACTGCAGTGGAGACAC
***
76637131 GATATGTTTGCAAGTGGAGACAC
1 GATATAACTGC-AGTGGAGACAC
76637154 GATATAACTGCA
1 GATATAACTGCA
76637166 TAATTTGGCT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
21 8 0.31
22 1 0.04
23 17 0.65
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (22 bp):
GATATAACTGCAGTGGAGACAC
Found at i:76639430 original size:17 final size:18
Alignment explanation
Indices: 76639408--76639441 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
76639398 TACTTGTGGG
76639408 GGAATATGGAG-TCAACT
1 GGAATATGGAGTTCAACT
76639425 GGAATATGGAGTTCAAC
1 GGAATATGGAGTTCAAC
76639442 ATTTTGGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (18 bp):
GGAATATGGAGTTCAACT
Found at i:76642763 original size:27 final size:26
Alignment explanation
Indices: 76642707--76642763 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
76642697 CAACCTTAAC
* * *
76642707 CCTAGGGGTATATCAATAATTTTGCT
1 CCTAGGGGTAAATCAATAATTTTCCA
**
76642733 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAAT-AATTTTCCA
76642760 CCTA
1 CCTA
76642764 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAATAATTTTCCA
Found at i:76644740 original size:13 final size:13
Alignment explanation
Indices: 76644722--76644746 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76644712 TAAAACTATG
76644722 AAATAATAATAAT
1 AAATAATAATAAT
76644735 AAATAATAATAA
1 AAATAATAATAA
76644747 CAATAACATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATAATAATAAT
Found at i:76650030 original size:28 final size:26
Alignment explanation
Indices: 76649973--76650030 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
76649963 CAACCTTAAC
* * *
76649973 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
76649999 CCTAGGGGTAAATTCTGTAAATTTTCCA
1 CCTAGGGGTAAA-TCAGT-AATTTTCCA
76650027 CCTA
1 CCTA
76650031 TAAAGGCATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 11 0.42
27 4 0.15
28 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Done.