Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 234 of 325
Found at i:76651966 original size:13 final size:13
Alignment explanation
Indices: 76651948--76651972 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76651938 TAAACCTACG
76651948 AAATAATAATAAT
1 AAATAATAATAAT
76651961 AAATAATAATAA
1 AAATAATAATAA
76651973 CAATAACATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATAATAATAAT
Found at i:76657720 original size:28 final size:29
Alignment explanation
Indices: 76657678--76657763 Score: 88
Period size: 28 Copynumber: 3.1 Consensus size: 29
76657668 CATGATTGTA
* *
76657678 AATGTGATTTAGGCCTAAT-GGCCATATG
1 AATGTGGTTTGGGCCTAATAGGCCATATG
* * *
76657706 AATGTGGTTTGGGCCTAATGGGCCACATA
1 AATGTGGTTTGGGCCTAATAGGCCATATG
* *
76657735 AATGT-GATTGGGCCT-ATAGGTCATATG
1 AATGTGGTTTGGGCCTAATAGGCCATATG
76657762 AA
1 AA
76657764 AGAGATTGGG
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
27 10 0.21
28 26 0.54
29 12 0.25
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (29 bp):
AATGTGGTTTGGGCCTAATAGGCCATATG
Found at i:76657739 original size:29 final size:28
Alignment explanation
Indices: 76657676--76657750 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 28
76657666 AGCATGATTG
* * *
76657676 TAAATGTGATTTAGGCCTAATGGCCATA
1 TAAATGTGGTTTGGGCCTAATGGCCACA
*
76657704 TGAATGTGGTTTGGGCCTAATGGGCCACA
1 TAAATGTGGTTTGGGCCTAAT-GGCCACA
*
76657733 TAAATGT-GATTGGGCCTA
1 TAAATGTGGTTTGGGCCTA
76657751 TAGGTCATAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
28 28 0.70
29 12 0.30
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (28 bp):
TAAATGTGGTTTGGGCCTAATGGCCACA
Found at i:76657763 original size:56 final size:56
Alignment explanation
Indices: 76657676--76657785 Score: 134
Period size: 55 Copynumber: 2.0 Consensus size: 56
76657666 AGCATGATTG
* * *
76657676 TAAATGTGATTTAGGCCTAATGGCCATATGAATGTGGTTTGGGCCTAATGGGCCACA
1 TAAATGTGATTTAGGCCTAATGGCCATATGAAAG-AGATTGGGCCTAATGGGCCACA
* * *
76657733 TAAATGTGA-TTGGGCCT-ATAGGTCATATGAAAGAGATTGGGCCTAGTGGGCCA
1 TAAATGTGATTTAGGCCTAAT-GGCCATATGAAAGAGATTGGGCCTAATGGGCCA
76657786 TATACAGGTA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
55 19 0.41
56 18 0.39
57 9 0.20
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (56 bp):
TAAATGTGATTTAGGCCTAATGGCCATATGAAAGAGATTGGGCCTAATGGGCCACA
Found at i:76659518 original size:49 final size:49
Alignment explanation
Indices: 76659344--76659628 Score: 456
Period size: 49 Copynumber: 5.9 Consensus size: 49
76659334 CCTTTCGGGA
* * * * *
76659344 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76659391 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76659438 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76659485 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76659534 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76659583 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
76659629 CGCCATACTA
Statistics
Matches: 223, Mismatches: 11, Indels: 6
0.93 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 90 0.40
49 132 0.59
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76662569 original size:21 final size:20
Alignment explanation
Indices: 76662532--76662573 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
76662522 TACTCCAAGA
*
76662532 AAGCCGATTGATCCATCTCAG
1 AAGCCGATTCATCCATC-CAG
76662553 AAGCCGGATTCAT-CATCCAG
1 AAGCC-GATTCATCCATCCAG
76662573 A
1 A
76662574 TTGAAGATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 9 0.47
22 6 0.32
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (20 bp):
AAGCCGATTCATCCATCCAG
Found at i:76671166 original size:28 final size:29
Alignment explanation
Indices: 76671129--76671193 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 29
76671119 AAGTCTACAT
*
76671129 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* *
76671157 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
76671186 ACATTCAT
1 ACATTCAT
76671194 GTACTTGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 21 0.66
29 11 0.34
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:76690302 original size:42 final size:43
Alignment explanation
Indices: 76690237--76690357 Score: 133
Period size: 42 Copynumber: 2.8 Consensus size: 43
76690227 CATCGACTTA
*
76690237 TGATTTACATGTAAGACCATGTCTGGGACA-TCGGCATC-GTATT
1 TGATTT-CATGTAAGACCATGTCTGGGACAGT-GGCATCAATATT
* *
76690280 TGATTTCTTGTAAGACCCTGTCTGGGACAGTGGCATCAATATT
1 TGATTTCATGTAAGACCATGTCTGGGACAGTGGCATCAATATT
* * *
76690323 TG-TTACATGTAAGACCACGTCTAGGAC-GTTGGCAT
1 TGATTTCATGTAAGACCATGTCTGGGACAG-TGGCAT
76690358 TGTACAAGCT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
41 1 0.01
42 53 0.79
43 13 0.19
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
TGATTTCATGTAAGACCATGTCTGGGACAGTGGCATCAATATT
Found at i:76693458 original size:27 final size:27
Alignment explanation
Indices: 76693428--76693507 Score: 70
Period size: 32 Copynumber: 2.7 Consensus size: 27
76693418 CCCTCATCAG
**
76693428 AATCAATTGGGCCTAGCCCATTCTCAA
1 AATCAATTGGGCCTAGCCCATTAACAA
76693455 AATCAGTAAAGTTGGGCCTAGCCCATTAACAA
1 AATC----AA-TTGGGCCTAGCCCATTAACAA
**
76693487 AATCAGGTGGGCCTAAGCCCA
1 AATCAATTGGGCCT-AGCCCA
76693508 ATACAGAATC
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
27 11 0.26
28 7 0.16
31 2 0.05
32 23 0.53
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (27 bp):
AATCAATTGGGCCTAGCCCATTAACAA
Found at i:76693517 original size:27 final size:27
Alignment explanation
Indices: 76693467--76693519 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
76693457 TCAGTAAAGT
*
76693467 TGGGCCTAGCCCATTAACAAAATCAGG
1 TGGGCCTAGCCCAATAACAAAATCAGG
*
76693494 TGGGCCTAAGCCCAAT-ACAGAATCAG
1 TGGGCCT-AGCCCAATAACAAAATCAG
76693520 TATCAGATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.34, C:0.26, G:0.23, T:0.17
Consensus pattern (27 bp):
TGGGCCTAGCCCAATAACAAAATCAGG
Found at i:76693693 original size:22 final size:22
Alignment explanation
Indices: 76693668--76693710 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
76693658 TAACAGGATG
*
76693668 GCTCAATGTCGTAGACAGGACA
1 GCTCAATGCCGTAGACAGGACA
76693690 GCTCAATGCCGTAGACAGGAC
1 GCTCAATGCCGTAGACAGGAC
76693711 GACTAAAGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.26, G:0.28, T:0.16
Consensus pattern (22 bp):
GCTCAATGCCGTAGACAGGACA
Found at i:76697719 original size:28 final size:28
Alignment explanation
Indices: 76697666--76697824 Score: 85
Period size: 28 Copynumber: 5.6 Consensus size: 28
76697656 TCTCAAAATT
* * *
76697666 TCACACACTCAGTGCCTTCAC-AGATGTA
1 TCACACACTAAGTGCCATC-CTGGATGTA
*
76697694 TCACACACTAAGTGCCATCCTGGATGTC
1 TCACACACTAAGTGCCATCCTGGATGTA
** * ** *
76697722 TCGTACTCTAAGTGCCATCCTCAAT-AA
1 TCACACACTAAGTGCCATCCTGGATGTA
* * *
76697749 TTCATC-CACTAAGAGCCATTTCTGGATGTT
1 -TCA-CACACTAAGTGCCA-TCCTGGATGTA
* *
76697779 TCGCACACTAAGTGCCATCCT-CA-GTAA
1 TCACACACTAAGTGCCATCCTGGATGT-A
*
76697806 CTCGCACACTAAGTGCCAT
1 -TCACACACTAAGTGCCAT
76697825 TTTTCAAAAT
Statistics
Matches: 98, Mismatches: 25, Indels: 16
0.71 0.18 0.12
Matches are distributed among these distances:
26 2 0.02
27 2 0.02
28 76 0.78
29 18 0.18
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (28 bp):
TCACACACTAAGTGCCATCCTGGATGTA
Found at i:76697816 original size:57 final size:58
Alignment explanation
Indices: 76697697--76697826 Score: 167
Period size: 57 Copynumber: 2.3 Consensus size: 58
76697687 AGATGTATCA
* * * * *
76697697 CACACTAAGTGCCA-TCCTGGATGTCTCGTACTCTAAGTGCCATCCTCAATAATTCAT
1 CACACTAAGTGCCATTTCTGGATGTCTCGCACACTAAGTGCCATCCTCAATAACTCAG
* * *
76697754 C-CACTAAGAGCCATTTCTGGATGTTTCGCACACTAAGTGCCATCCTCAGTAACTC-G
1 CACACTAAGTGCCATTTCTGGATGTCTCGCACACTAAGTGCCATCCTCAATAACTCAG
76697810 CACACTAAGTGCCATTT
1 CACACTAAGTGCCATTT
76697827 TTCAAAATCG
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
56 12 0.19
57 50 0.81
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.28
Consensus pattern (58 bp):
CACACTAAGTGCCATTTCTGGATGTCTCGCACACTAAGTGCCATCCTCAATAACTCAG
Found at i:76699802 original size:212 final size:210
Alignment explanation
Indices: 76699402--76699804 Score: 549
Period size: 212 Copynumber: 1.9 Consensus size: 210
76699392 ACCCGAATTC
*
76699402 GGGCCTAATCAGAATAGGGTTTCGTGACCACAAATCCGAGATAGAAATAATTGTTTTATAATTAT
1 GGGCCTAATCAGAATAGGGTTTCGTGACCACAAATCCGAGATAGAAATAATTATTTTATAATTAT
* * * * **
76699467 TTTAGGGTTTATGATATGATTTCATGATTTCGTCAAAATTTCGTGATGAAATTCTATGCATTGAG
66 TTTAGGGTCTATGATATGATTGCATAATTTCGTCAAAATTTCGTGAAGAAATTCTATGCATAAAG
* * * ** *
76699532 CGCTTAAGTTGAGATTAGGGACTAAACCGAATAAATTGTAAAACTCGTGTTTTAGAAGTTTTTTG
131 CGCTTAAATTGAAATTAGCGACTAAACCGAATAAATTGTAAAACTCGCATTCTAGAAGTTTTTTG
76699597 TAATATCCTGATTTT
196 TAATATCCTGATTTT
* * * *
76699612 GGGCCTAGTCGGAATAGCGGTTTTGTGACCACAAAATCCGAGATAGAAATAATTATTTTATGATT
1 GGGCCTAATCAGAATAG-GGTTTCGTGACCAC-AAATCCGAGATAGAAATAATTATTTTATAATT
* *
76699677 ATTTT-GAGGTCTATGATATGATTGCATAATTGT-GTGAAAATTTCGTGAAGAAATTTTATGCAT
64 ATTTTAG-GGTCTATGATATGATTGCATAATT-TCGTCAAAATTTCGTGAAGAAATTCTATGCAT
* * * *
76699740 AAAGTGCTTAAATTGAAATTAGCGACTAAATCGAATAATTTGTAAAACTTGCATTCTAGAAGTTT
127 AAAGCGCTTAAATTGAAATTAGCGACTAAACCGAATAAATTGTAAAACTCGCATTCTAGAAGTTT
76699805 CTAGTATGAA
Statistics
Matches: 166, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
210 15 0.09
211 14 0.08
212 136 0.82
213 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (210 bp):
GGGCCTAATCAGAATAGGGTTTCGTGACCACAAATCCGAGATAGAAATAATTATTTTATAATTAT
TTTAGGGTCTATGATATGATTGCATAATTTCGTCAAAATTTCGTGAAGAAATTCTATGCATAAAG
CGCTTAAATTGAAATTAGCGACTAAACCGAATAAATTGTAAAACTCGCATTCTAGAAGTTTTTTG
TAATATCCTGATTTT
Found at i:76700939 original size:46 final size:46
Alignment explanation
Indices: 76700886--76701152 Score: 258
Period size: 46 Copynumber: 5.8 Consensus size: 46
76700876 TATTTGGGCA
76700886 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
76700932 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
*
76700979 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** * *
76701025 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCAT-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* * * *
76701073 T-CGAGCTCGTTGAATTGGGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
76701118 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
76701153 CGGCGGGTTA
Statistics
Matches: 176, Mismatches: 31, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
43 2 0.01
44 6 0.03
45 2 0.01
46 95 0.54
47 59 0.34
48 3 0.02
49 7 0.04
50 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76701041 original size:93 final size:93
Alignment explanation
Indices: 76700882--76701146 Score: 458
Period size: 93 Copynumber: 2.8 Consensus size: 93
76700872 AGGATATTTG
*
76700882 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
76700947 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
76700975 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
76701040 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * * * *
76701068 GGCATTCGAGCTCGTTGAATTGGGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
76701133 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
76701147 ACTTATCGGC
Statistics
Matches: 163, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 163 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:76706558 original size:47 final size:47
Alignment explanation
Indices: 76706489--76706661 Score: 212
Period size: 47 Copynumber: 3.7 Consensus size: 47
76706479 AGGATATTTG
76706489 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
*** *
76706536 GGCATCC-AAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-
1 GGCATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
*
76706579 GCGAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
1 G-GCA--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
* *
76706629 GGCATCCGAGCTCGTTGAATTGAGTCCGAGTTC
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
76706662 ACTTATGGAT
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 32 0.30
47 63 0.60
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:76706613 original size:46 final size:45
Alignment explanation
Indices: 76706544--76706715 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 45
76706534 TAGGCATCCA
76706544 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
* *** * *
76706590 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCG
* *
76706637 AGCTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
76706683 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76706716 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 63 0.61
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (45 bp):
AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCG
Found at i:76706633 original size:93 final size:93
Alignment explanation
Indices: 76706493--76706707 Score: 385
Period size: 93 Copynumber: 2.3 Consensus size: 93
76706483 TATTTGGGCA
*
76706493 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCAAGCTCGTTGAGTTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCAAGCTCGTTGAATTG
*
76706558 AGTCCGAGTTCACTTATGGATGCGAATG
66 AGTCCGAGTTCACTTATGGATGCGAACG
*
76706586 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAATTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCAAGCTCGTTGAATTG
76706651 AGTCCGAGTTCACTTATGGATGCGAACG
66 AGTCCGAGTTCACTTATGGATGCGAACG
* *
76706679 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
76706708 ACTTATGGGC
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 117 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (93 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCAAGCTCGTTGAATTG
AGTCCGAGTTCACTTATGGATGCGAACG
Found at i:76714035 original size:86 final size:85
Alignment explanation
Indices: 76713907--76714068 Score: 222
Period size: 86 Copynumber: 1.9 Consensus size: 85
76713897 ATAGGATTCG
* *
76713907 GTATTTGTTTTCGTGTAAGACCACGTCTAGGACACTAGCATCGACT-TATGATTTACGTGTAAGA
1 GTATTTGATTTCGTGTAAGACCACGTCTAGGACACTAGCATCGA-TATATGA-TTACATGTAAGA
76713971 CCATGTCTGGGACATCGGCATC
64 CCATGTCTGGGACATCGGCATC
* * *
76713993 GTATTTGATTTCTTGTAAGACC-CTGTCTAGGACAGT-GTCATCGATATTTGATTACATGTAAGA
1 GTATTTGATTTCGTGTAAGACCAC-GTCTAGGACACTAG-CATCGATATATGATTACATGTAAGA
76714056 CCATGTCTGGGAC
64 CCATGTCTGGGAC
76714069 GTTCGCATTG
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
85 27 0.40
86 41 0.60
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (85 bp):
GTATTTGATTTCGTGTAAGACCACGTCTAGGACACTAGCATCGATATATGATTACATGTAAGACC
ATGTCTGGGACATCGGCATC
Found at i:76714041 original size:43 final size:42
Alignment explanation
Indices: 76713894--76714068 Score: 158
Period size: 43 Copynumber: 4.1 Consensus size: 42
76713884 CAAATGTCAT
* * * *
76713894 GACATAGGATTCGGTATTTGTTTTCGTGTAAGACCACGTCTAG
1 GACATAGCA-TCGATATTTGATTTCGTGTAAGACCATGTCTAG
* *
76713937 GACACTAGCATCGACT-TATGATTTACGTGTAAGACCATGTCTGG
1 GACA-TAGCATCGA-TATTTGATTT-CGTGTAAGACCATGTCTAG
* * *
76713981 GACATCGGCATCG-TATTTGATTTCTTGTAAGACCCTGTCTAG
1 GACAT-AGCATCGATATTTGATTTCGTGTAAGACCATGTCTAG
* * *
76714023 GACAGT-GTCATCGATATTTGATTACATGTAAGACCATGTCTGG
1 GACA-TAG-CATCGATATTTGATTTCGTGTAAGACCATGTCTAG
76714066 GAC
1 GAC
76714069 GTTCGCATTG
Statistics
Matches: 109, Mismatches: 15, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.24
43 50 0.46
44 32 0.29
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (42 bp):
GACATAGCATCGATATTTGATTTCGTGTAAGACCATGTCTAG
Found at i:76746317 original size:152 final size:154
Alignment explanation
Indices: 76746038--76746348 Score: 461
Period size: 152 Copynumber: 2.0 Consensus size: 154
76746028 GGTCATATGC
*
76746038 ACAATAAAATATTGTATAGTTAGCTTCAAGGCCTATTTTGATTTTTCCATATATTGTTGGCTAAT
1 ACAATAAAATATTGTATAGTCAGCTTCAAGGCCTATTTTGATTTTTCCATATATTGTTGGCTAAT
* * *
76746103 AAAGCTAAGTGCCAGATAAAGTTCCATTTAGGGGGAATTAACAGATTGCAATTAGAATCAATA-T
66 AAAGCCAAGTGCCAGATAAAGTTCCATTTAGGGGGAATAAACAGATTGCAATTAGAACCAATACT
* *
76746167 CTATGTCTATCAAAAATTTGCAAA
131 CTATGTCCATCAAAAAATTGCAAA
*
76746191 ACAATAAAATATTGTATTGTCAGCTTCAAGGCCTATTTTGATTTTTCCATATA-TGTTGGCTAAT
1 ACAATAAAATATTGTATAGTCAGCTTCAAGGCCTATTTTGATTTTTCCATATATTGTTGGCTAAT
**
76746255 AAAGCCAAGTATC-GAATCAAA-TTCCATTTA-GGGGAATAAAACAGATTGCAATTAGAACCAAT
66 AAAGCCAAGTGCCAG-AT-AAAGTTCCATTTAGGGGGAAT-AAACAGATTGCAATTAGAACCAAT
*
76746317 ATCTCTATGTCCATCAAAAAATTGCAAT
128 A-CTCTATGTCCATCAAAAAATTGCAAA
76746345 ACAA
1 ACAA
76746349 CTTGTATCAT
Statistics
Matches: 143, Mismatches: 10, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
151 8 0.06
152 55 0.38
153 54 0.38
154 26 0.18
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (154 bp):
ACAATAAAATATTGTATAGTCAGCTTCAAGGCCTATTTTGATTTTTCCATATATTGTTGGCTAAT
AAAGCCAAGTGCCAGATAAAGTTCCATTTAGGGGGAATAAACAGATTGCAATTAGAACCAATACT
CTATGTCCATCAAAAAATTGCAAA
Found at i:76748654 original size:44 final size:43
Alignment explanation
Indices: 76748604--76748686 Score: 112
Period size: 44 Copynumber: 1.9 Consensus size: 43
76748594 ACACCCATTG
* * * *
76748604 TTATTTTTTTATATTTTTTTTTACTTTTGTCATTTCTCTTACAC
1 TTATTTTTTTAAAATTTTTTTAACTTTTGTC-TTTATCTTACAC
*
76748648 TTATTTTTTTAAAATTTTTTTAATTTTTGTCTTTATCTT
1 TTATTTTTTTAAAATTTTTTTAACTTTTGTCTTTATCTT
76748687 TATTTATTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
43 7 0.21
44 27 0.79
ACGTcount: A:0.18, C:0.10, G:0.02, T:0.70
Consensus pattern (43 bp):
TTATTTTTTTAAAATTTTTTTAACTTTTGTCTTTATCTTACAC
Found at i:76748706 original size:5 final size:5
Alignment explanation
Indices: 76748679--76748724 Score: 51
Period size: 5 Copynumber: 9.2 Consensus size: 5
76748669 AATTTTTGTC
*
76748679 TTTAT CTTTA- TTTA- TTCAT TTTAT TTTAT TTTAT TTTAT TATTAT T
1 TTTAT -TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT T-TTAT T
76748725 AATTTTAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
4 7 0.19
5 20 0.56
6 9 0.25
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTAT
Found at i:76748729 original size:15 final size:14
Alignment explanation
Indices: 76748685--76748731 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
76748675 TGTCTTTATC
*
76748685 TTTA-TTTATTCAT
1 TTTATTTTATTAAT
*
76748698 TTTATTTTATTTTAT
1 TTTATTTTA-TTAAT
76748713 TTTATTATTATTAAT
1 TTTATT-TTATTAAT
76748728 TTTA
1 TTTA
76748732 AAAAATTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 4 0.14
14 4 0.14
15 18 0.62
16 3 0.10
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTATTTTATTAAT
Found at i:76748853 original size:13 final size:14
Alignment explanation
Indices: 76748818--76748853 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
76748808 ATTTTTCTAA
76748818 ATTTT-AAA-TATT
1 ATTTTAAAATTATT
76748830 ATTTTAAAATTATT
1 ATTTTAAAATTATT
76748844 -TTTTAAAATT
1 ATTTTAAAATT
76748854 TTAAATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.23
13 13 0.59
14 4 0.18
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTTTAAAATTATT
Found at i:76748951 original size:22 final size:22
Alignment explanation
Indices: 76748926--76748997 Score: 65
Period size: 22 Copynumber: 3.1 Consensus size: 22
76748916 TATTATTAGT
*
76748926 TTTATAATATTTTAAATGTATA
1 TTTATAATATTTTAAATATATA
* *
76748948 TTTAAAATGTTTTATAATATATATA
1 TTTATAAT-ATTT-TAA-ATATATA
*
76748973 TTTTTTAA-ATTTTAAATATATA
1 -TTTATAATATTTTAAATATATA
76748995 TTT
1 TTT
76748998 TTGAAATTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
21 3 0.08
22 14 0.35
23 6 0.15
24 6 0.15
25 6 0.15
26 5 0.12
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (22 bp):
TTTATAATATTTTAAATATATA
Found at i:76748993 original size:20 final size:20
Alignment explanation
Indices: 76748968--76749088 Score: 66
Period size: 20 Copynumber: 5.7 Consensus size: 20
76748958 TTTATAATAT
76748968 ATATATTTTTTAAATTTTAA
1 ATATATTTTTTAAATTTTAA
**
76748988 ATATATATTTTTGAAATTATTTTT
1 ATATAT-TTTTT-AAA-T-TTTAA
* * * *
76749012 CTAAATTTTAAATATTATTTTTAA
1 ATATATTTT--TTA-AATT-TTAA
*
76749036 AT-TATTTTTTAAAAATTTAA
1 ATATATTTTTT-AAATTTTAA
*
76749056 ATATTATTTTTT-AATATTAA
1 ATA-TATTTTTTAAATTTTAA
76749076 ATATATTTTTTAA
1 ATATATTTTTTAA
76749089 TAATATAAAA
Statistics
Matches: 74, Mismatches: 15, Indels: 24
0.65 0.13 0.21
Matches are distributed among these distances:
19 8 0.11
20 22 0.30
21 8 0.11
22 12 0.16
23 10 0.14
24 12 0.16
25 2 0.03
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.59
Consensus pattern (20 bp):
ATATATTTTTTAAATTTTAA
Found at i:76749053 original size:22 final size:22
Alignment explanation
Indices: 76749036--76749102 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
76749026 TTATTTTTAA
76749036 ATTATTTTTTAAAAATTTAAAT
1 ATTATTTTTTAAAAATTTAAAT
*
76749058 ATTATTTTTT-AATA-TTAAAT
1 ATTATTTTTTAAAAATTTAAAT
* *
76749078 A-TATTTTTTAATAATATAAAAT
1 ATTATTTTTTAAAAAT-TTAAAT
76749100 ATT
1 ATT
76749103 TAAATATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
19 8 0.22
20 9 0.24
21 3 0.08
22 16 0.43
23 1 0.03
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTATTTTTTAAAAATTTAAAT
Found at i:76749066 original size:33 final size:32
Alignment explanation
Indices: 76748773--76749066 Score: 176
Period size: 33 Copynumber: 8.9 Consensus size: 32
76748763 ATAATATACA
76748773 TATTTTTTAAATTTTAAATATATATTTTTGAAAT
1 TATTTTTTAAATTTTAAATAT-TATTTTT-AAAT
*
76748807 TATTTTTCTAAATTTTAAATATTATTTTAAAAT
1 TATTTTT-TAAATTTTAAATATTATTTTTAAAT
76748840 TATTTTTTAAAATTTTAAATA-TATTTTT-AAT
1 TATTTTTT-AAATTTTAAATATTATTTTTAAAT
* * *** * *
76748871 AATATAAAAAAGTTT-AA-A-TA-TTTTAAAGA
1 TATTTTTTAAATTTTAAATATTATTTTTAAA-T
* * * *
76748900 TATGGCGTTTCAAA-TTT-ATTATTAGTTTTATAA-
1 TAT---TTTTTAAATTTTAAATATTATTTTTA-AAT
* * * * *
76748933 TATTTTAAATGTATATTTAAAATGTT-TTATAATATAT
1 TATTTT---T-TAAATTTTAAATATTATT-T-TTAAAT
76748970 ATATTTTTTAAATTTTAAATATATATTTTTGAAAT
1 -TATTTTTTAAATTTTAAATAT-TATTTTT-AAAT
76749005 TATTTTTCTAAATTTTAAATATTATTTTTAAAT
1 TATTTTT-TAAATTTTAAATATTATTTTTAAAT
*
76749038 TATTTTTTAAAAATTTAAATATTATTTTT
1 TATTTTTT-AAATTTTAAATATTATTTTT
76749067 TAATATTAAA
Statistics
Matches: 204, Mismatches: 30, Indels: 53
0.71 0.10 0.18
Matches are distributed among these distances:
27 4 0.02
28 5 0.02
29 4 0.02
30 8 0.04
31 10 0.05
32 13 0.06
33 59 0.29
34 46 0.23
35 39 0.19
36 8 0.04
37 2 0.01
38 6 0.03
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.55
Consensus pattern (32 bp):
TATTTTTTAAATTTTAAATATTATTTTTAAAT
Found at i:76749101 original size:20 final size:20
Alignment explanation
Indices: 76749032--76749103 Score: 87
Period size: 20 Copynumber: 3.6 Consensus size: 20
76749022 AATATTATTT
*
76749032 TTAAAT-TATTTTTTAAAAA
1 TTAAATATATTTTTTAATAA
76749051 TTTAAATATTATTTTTTAAT-A
1 -TTAAATA-TATTTTTTAATAA
76749072 TTAAATATATTTTTTAATAA
1 TTAAATATATTTTTTAATAA
76749092 TATAAA-ATATTT
1 T-TAAATATATTT
76749104 AAATATTTTA
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
19 11 0.23
20 21 0.45
21 5 0.11
22 10 0.21
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TTAAATATATTTTTTAATAA
Found at i:76749246 original size:23 final size:22
Alignment explanation
Indices: 76749213--76749256 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
76749203 AAATATTTAA
* *
76749213 ATATTTTATATTATTAAAAATAT
1 ATATTTAATATT-TAAAAAATAT
76749236 ATATTTAATATTTAAAAAATA
1 ATATTTAATATTTAAAAAATA
76749257 ACATTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATATTTAATATTTAAAAAATAT
Found at i:76749284 original size:21 final size:21
Alignment explanation
Indices: 76749259--76749300 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
76749249 AAAAAATAAC
76749259 ATTTTAAAAAAT-ATATTCAAA
1 ATTTTAAAAAATAAT-TTCAAA
76749280 ATTTTAAAAAATAATTTCAAA
1 ATTTTAAAAAATAATTTCAAA
76749301 TATATATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (21 bp):
ATTTTAAAAAATAATTTCAAA
Found at i:76749314 original size:33 final size:36
Alignment explanation
Indices: 76749229--76749320 Score: 120
Period size: 33 Copynumber: 2.7 Consensus size: 36
76749219 TATATTATTA
*
76749229 AAAATATATATTTAATA-TTTAAAAAATAACATTTT
1 AAAATATATATTTAAAATTTTAAAAAATAACATTTT
* *
76749264 AAAAAATATATTCAAAATTTTAAAAAAT-A-A-TTT
1 AAAATATATATTTAAAATTTTAAAAAATAACATTTT
*
76749297 CAAATATATATTTAAAATTTTAAA
1 AAAATATATATTTAAAATTTTAAA
76749321 TATATATTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
33 24 0.48
34 1 0.02
35 15 0.30
36 10 0.20
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (36 bp):
AAAATATATATTTAAAATTTTAAAAAATAACATTTT
Found at i:76749344 original size:23 final size:23
Alignment explanation
Indices: 76749266--76749367 Score: 108
Period size: 23 Copynumber: 4.6 Consensus size: 23
76749256 AACATTTTAA
*
76749266 AAAATATATTCAAA-AT-T-TTAA
1 AAAATAT-TTCAAATATATATTAT
76749287 AAAATAATTTCAAATATATATT-T
1 AAAAT-ATTTCAAATATATATTAT
76749310 AAAAT-TTT-AAATATATATTAT
1 AAAATATTTCAAATATATATTAT
*
76749331 AAAATATTTCAAATATATATTTT
1 AAAATATTTCAAATATATATTAT
* *
76749354 AAAATTTTTAAAAT
1 AAAATATTTCAAAT
76749368 TAATAATAAA
Statistics
Matches: 70, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
20 11 0.16
21 20 0.29
22 7 0.10
23 30 0.43
24 2 0.03
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (23 bp):
AAAATATTTCAAATATATATTAT
Found at i:76749377 original size:44 final size:44
Alignment explanation
Indices: 76749287--76749378 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
76749277 AAAATTTTAA
*
76749287 AAAATAATTTCAAATATATATTTAAAATTTTAAATATATATTAT
1 AAAATAATTTCAAATATATATTTAAAATTTTAAATATATATAAT
76749331 AAAAT-ATTTCAAATATATATTTTAAAATTTTTAAA-AT-TAATAAT
1 AAAATAATTTCAAATATATA-TTTAAAA-TTTTAAATATAT-ATAAT
76749375 AAAA
1 AAAA
76749379 AATAAGTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
43 15 0.34
44 22 0.50
45 7 0.16
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (44 bp):
AAAATAATTTCAAATATATATTTAAAATTTTAAATATATATAAT
Found at i:76750640 original size:17 final size:17
Alignment explanation
Indices: 76750620--76750654 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
76750610 TTTATAAAAT
* *
76750620 CAAATCTTTTAATATTA
1 CAAATCTTCTAAGATTA
76750637 CAAATCTTCTAAGATTA
1 CAAATCTTCTAAGATTA
76750654 C
1 C
76750655 TTCCCATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (17 bp):
CAAATCTTCTAAGATTA
Found at i:76751403 original size:13 final size:13
Alignment explanation
Indices: 76751385--76751416 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
76751375 AAATTTAGGA
76751385 TTATTCTAATATC
1 TTATTCTAATATC
76751398 TTATTCTAATATC
1 TTATTCTAATATC
76751411 TT-TTCT
1 TTATTCT
76751417 CTTTCGATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (13 bp):
TTATTCTAATATC
Found at i:76751874 original size:16 final size:17
Alignment explanation
Indices: 76751840--76751877 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
76751830 GGTTTAATTT
*
76751840 TTTTATTCGTTTGTCTA
1 TTTTATTCGTTTCTCTA
*
76751857 TTTTATT-GTTTCTTTA
1 TTTTATTCGTTTCTCTA
76751873 TTTTA
1 TTTTA
76751878 ATTATTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.13, C:0.08, G:0.08, T:0.71
Consensus pattern (17 bp):
TTTTATTCGTTTCTCTA
Found at i:76758667 original size:13 final size:14
Alignment explanation
Indices: 76758651--76758686 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
76758641 CAATCTCATA
76758651 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
76758664 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
76758677 TCTC-ATTTCA
1 TCTCAATTTCA
76758687 TTCCAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:76758676 original size:18 final size:19
Alignment explanation
Indices: 76758638--76758678 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
76758628 TGGTTCATGT
76758638 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
76758657 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
76758675 TTTC
1 TTTC
76758679 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:76758869 original size:21 final size:21
Alignment explanation
Indices: 76758842--76758926 Score: 80
Period size: 21 Copynumber: 4.0 Consensus size: 21
76758832 TGATCAGTAT
76758842 ACGACACATAAAGTGCCTAAA
1 ACGACACATAAAGTGCCTAAA
* ** * * *
76758863 ATGACACACGAGGTGCCTGAT
1 ACGACACATAAAGTGCCTAAA
* *
76758884 ACGACACATGAGGTGCCTGAAA
1 ACGACACATAAAGTGCCT-AAA
76758906 TACGACACATAAAGTGCCTAA
1 -ACGACACATAAAGTGCCTAA
76758927 TCGATAAAGC
Statistics
Matches: 50, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
21 31 0.62
22 3 0.06
23 16 0.32
ACGTcount: A:0.39, C:0.24, G:0.21, T:0.16
Consensus pattern (21 bp):
ACGACACATAAAGTGCCTAAA
Found at i:76778844 original size:42 final size:42
Alignment explanation
Indices: 76778798--76778944 Score: 170
Period size: 42 Copynumber: 3.3 Consensus size: 42
76778788 CATAGTTTAA
*
76778798 CTATGGTCTTACACATCTTCACATAAT-GATGCCACAGCCCAG
1 CTATGGTCTTACACATCTTCACAT-ATCGATGCCATAGCCCAG
* * * *
76778840 CTATGGTCTTACACATATTTATATATCGATGCCATAGCCCAA
1 CTATGGTCTTACACATCTTCACATATCGATGCCATAGCCCAG
76778882 CTATGGTCTTACACGTAATCACATATCACATATCGATGCCATAGCCCAG
1 CTATGGTCTTACAC---AT--C-T-TCACATATCGATGCCATAGCCCAG
76778931 CTATGGTCTTACAC
1 CTATGGTCTTACAC
76778945 GAATCACATA
Statistics
Matches: 88, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
41 2 0.02
42 48 0.55
45 2 0.02
48 1 0.01
49 35 0.40
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (42 bp):
CTATGGTCTTACACATCTTCACATATCGATGCCATAGCCCAG
Found at i:76778924 original size:49 final size:48
Alignment explanation
Indices: 76778864--76779034 Score: 199
Period size: 47 Copynumber: 3.6 Consensus size: 48
76778854 ATATTTATAT
76778864 ATCGATGCCATAGCCCA-ACTATGGTCTTACACGTAATCACATATCACA
1 ATCGATGCCATAGCCCAGA-TATGGTCTTACACGTAATCACATATCACA
* *
76778912 TATCGATGCCATAGCCCAGCTATGGTCTTACACG-AATCACATATCTCA
1 -ATCGATGCCATAGCCCAGATATGGTCTTACACGTAATCACATATCACA
* * * * *
76778960 CT-GATGCCATATCCCAGATATGGTCTTATACAGT-AGCATATATCAC-
1 ATCGATGCCATAGCCCAGATATGGTCTTACAC-GTAATCACATATCACA
* *
76779006 ACCGATGCCATATCCCAGATATGGTCTTA
1 ATCGATGCCATAGCCCAGATATGGTCTTA
76779035 TACAGAAATC
Statistics
Matches: 107, Mismatches: 11, Indels: 10
0.84 0.09 0.08
Matches are distributed among these distances:
46 26 0.24
47 37 0.35
48 13 0.12
49 31 0.29
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (48 bp):
ATCGATGCCATAGCCCAGATATGGTCTTACACGTAATCACATATCACA
Found at i:76779039 original size:47 final size:46
Alignment explanation
Indices: 76778825--76779034 Score: 196
Period size: 47 Copynumber: 4.6 Consensus size: 46
76778815 TTCACATAAT
* * ** * *
76778825 GATGCCACAGCCCAGCTATGGTCTTACAC--AT-ATTTAT-ATATC
1 GATGCCATAGCCCAGATATGGTCTTACACGTATCACATATCACACC
*
76778867 GATGCCATAGCCCA-ACTATGGTCTTACACGTAATCACATATCACATATC
1 GATGCCATAGCCCAGA-TATGGTCTTACACGT-ATCACATATCAC--ACC
* * * *
76778916 GATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACT
1 GATGCCATAGCCCAGATATGGTCTTACACGTATCACATATCACACC
* * * *
76778962 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACC
1 GATGCCATAGCCCAGATATGGTCTTACAC-GTATCACATATCACACC
*
76779009 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATAGCCCAGATATGGTCTTA
76779035 TACAGAAATC
Statistics
Matches: 140, Mismatches: 18, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
42 26 0.19
45 2 0.01
46 31 0.22
47 39 0.28
48 11 0.08
49 31 0.22
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (46 bp):
GATGCCATAGCCCAGATATGGTCTTACACGTATCACATATCACACC
Found at i:76779099 original size:31 final size:31
Alignment explanation
Indices: 76779056--76779204 Score: 217
Period size: 31 Copynumber: 4.8 Consensus size: 31
76779046 CTTGTCACTT
* * *
76779056 GTAGTCGAAGCTACCACTATTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
76779087 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
76779118 GTAGCCGGAGATACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
76779149 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
76779180 GTAGCCAAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
76779205 TGTCATTTGT
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:76779279 original size:50 final size:50
Alignment explanation
Indices: 76779180--76779306 Score: 175
Period size: 50 Copynumber: 2.5 Consensus size: 50
76779170 CACTGATCAG
* * *
76779180 GTAGCCAAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCC-AAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAAATAAGT
* *
76779231 GTAGCCGAAGCTATTACTTATCACTT-TCATTTGTCCTTGATTAAATAAGT
1 GTAGCC-AAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAAATAAGT
76779281 GTAGCCAGAGCTATCACTTATCACTT
1 GTAGCCA-AGCTATCACTTATCACTT
76779307 ATTGCCATGG
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
49 1 0.01
50 45 0.66
51 22 0.32
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (50 bp):
GTAGCCAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAAATAAGT
Found at i:76788440 original size:29 final size:29
Alignment explanation
Indices: 76788407--76788523 Score: 173
Period size: 29 Copynumber: 4.1 Consensus size: 29
76788397 CTATATTCCC
* *
76788407 ATGGCCTATTAGGCCCAAGTCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
*
76788436 ATGGCCCTTTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
*
76788465 GTGGCCCATTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
**
76788494 GCGGCCCATTAGGCCCAAATCACA-TTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
76788522 AT
1 AT
76788524 TCATGCTCAC
Statistics
Matches: 80, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 4 0.05
29 76 0.95
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACATTTAT
Found at i:76788745 original size:16 final size:16
Alignment explanation
Indices: 76788724--76788760 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
76788714 AAACTTTCAG
*
76788724 CTTTTCGGCATTTTGC
1 CTTTTCAGCATTTTGC
*
76788740 CTTTTCAGCATTTTGG
1 CTTTTCAGCATTTTGC
76788756 CTTTT
1 CTTTT
76788761 GCCGATCTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.08, C:0.22, G:0.16, T:0.54
Consensus pattern (16 bp):
CTTTTCAGCATTTTGC
Found at i:76788748 original size:24 final size:23
Alignment explanation
Indices: 76788718--76788763 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
76788708 GTAGCCAAAC
76788718 TTTCAGC-TTTTCGGCATTTTGCCT
1 TTTCAGCATTTT-GGC-TTTTGCCT
76788742 TTTCAGCATTTTGGCTTTTGCC
1 TTTCAGCATTTTGGCTTTTGCC
76788764 GATCTACTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 7 0.33
24 10 0.48
25 4 0.19
ACGTcount: A:0.09, C:0.24, G:0.17, T:0.50
Consensus pattern (23 bp):
TTTCAGCATTTTGGCTTTTGCCT
Found at i:76790618 original size:11 final size:11
Alignment explanation
Indices: 76790602--76790637 Score: 72
Period size: 11 Copynumber: 3.3 Consensus size: 11
76790592 CAATGCCATT
76790602 AGCTTAGTATA
1 AGCTTAGTATA
76790613 AGCTTAGTATA
1 AGCTTAGTATA
76790624 AGCTTAGTATA
1 AGCTTAGTATA
76790635 AGC
1 AGC
76790638 CTATACAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.33
Consensus pattern (11 bp):
AGCTTAGTATA
Found at i:76792043 original size:61 final size:59
Alignment explanation
Indices: 76791969--76792139 Score: 152
Period size: 60 Copynumber: 2.8 Consensus size: 59
76791959 TCAAACTTTA
* *
76791969 CTGGGCCTAAGCCCTATTCAAAATCAGTATTA-ACTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCCT-AGCCCTATTCAAAATCAG-AGTATACTGGGCC-TAGCCCATATCAATATCAAT
* ** * *
76792030 CTGGGCCATAGCCCCT-TACAGTATCAGAGTATATTGGGCCTAGCCCATATCAGTATCAAT
1 CTGGGCC-TAG-CCCTATTCAAAATCAGAGTATACTGGGCCTAGCCCATATCAATATCAAT
* * *
76792090 CTGGGCCGTAGCCCTATT-ACAAGTC-GAGATATATTGGGCCTTGCCCATAT
1 CTGGGCC-TAGCCCTATTCA-AAATCAGAG-TATACTGGGCCTAGCCCATAT
76792140 TAACATAGTT
Statistics
Matches: 91, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
59 8 0.09
60 54 0.59
61 24 0.26
62 5 0.05
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (59 bp):
CTGGGCCTAGCCCTATTCAAAATCAGAGTATACTGGGCCTAGCCCATATCAATATCAAT
Found at i:76792096 original size:27 final size:28
Alignment explanation
Indices: 76791991--76792103 Score: 88
Period size: 28 Copynumber: 3.9 Consensus size: 28
76791981 CCTATTCAAA
* *
76791991 ATCAGTATTAA-CTGGGCCTTAGCCCAT
1 ATCAGTATCAATCTGGGCCATAGCCCAT
* * *
76792018 ATCAATATTAATCTGGGCCATAGCCCCT
1 ATCAGTATCAATCTGGGCCATAGCCCAT
*
76792046 -TACAGTATCAGAGTATATTGGGCC-TAGCCCAT
1 AT-CAGTATC--A--AT-CTGGGCCATAGCCCAT
*
76792078 ATCAGTATCAATCTGGGCCGTAGCCC
1 ATCAGTATCAATCTGGGCCATAGCCC
76792104 TATTACAAGT
Statistics
Matches: 69, Mismatches: 8, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
27 17 0.25
28 27 0.39
30 2 0.03
32 16 0.23
33 7 0.10
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (28 bp):
ATCAGTATCAATCTGGGCCATAGCCCAT
Found at i:76792102 original size:60 final size:60
Alignment explanation
Indices: 76792003--76792139 Score: 172
Period size: 60 Copynumber: 2.3 Consensus size: 60
76791993 CAGTATTAAC
* *
76792003 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* *
76792064 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
*
76792124 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
76792140 TAACATAGTT
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
60 53 0.78
61 13 0.19
62 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:76793741 original size:31 final size:31
Alignment explanation
Indices: 76793698--76793761 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
76793688 CCTTTTCATA
76793698 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
76793729 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
76793760 TT
1 TT
76793762 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:76794004 original size:24 final size:24
Alignment explanation
Indices: 76793968--76794095 Score: 206
Period size: 24 Copynumber: 5.4 Consensus size: 24
76793958 CTGGAGGCCT
*
76793968 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
76793993 AGCCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
76794017 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
76794040 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
76794064 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
76794087 AGCCCTTTT
1 AGCCCTTTT
76794096 GCACTTCCTC
Statistics
Matches: 96, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
23 44 0.46
24 48 0.50
25 4 0.04
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:76794029 original size:23 final size:23
Alignment explanation
Indices: 76793975--76794094 Score: 195
Period size: 23 Copynumber: 5.1 Consensus size: 23
76793965 CCTAGCCTCT
*
76793975 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
76793998 TTTTAATAACTAGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
76794022 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
76794045 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
76794069 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
76794092 TTT
1 TTT
76794095 TGCACTTCCT
Statistics
Matches: 90, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
23 47 0.52
24 43 0.48
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:76794096 original size:47 final size:47
Alignment explanation
Indices: 76793975--76794096 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
76793965 CCTAGCCTCT
* *
76793975 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
*
76794022 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
76794069 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
76794097 CACTTCCTCC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
Found at i:76794164 original size:20 final size:20
Alignment explanation
Indices: 76794151--76794211 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
76794141 ACATCTCAAT
76794151 TGCATATCATACATATCATG
1 TGCATATCATACATATCATG
*
76794171 TGCATATCATACATGTCATG
1 TGCATATCATACATATCATG
76794191 TGCATATCATACATATCATG
1 TGCATATCATACATATCATG
76794211 T
1 T
76794212 TTATCAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (20 bp):
TGCATATCATACATATCATG
Found at i:76794167 original size:9 final size:9
Alignment explanation
Indices: 76794153--76794209 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
76794143 ATCTCAATTG
76794153 CATATCATA
1 CATATCATA
*
76794162 CATATCATGTG
1 CATATCA--TA
76794173 CATATCATA
1 CATATCATA
* *
76794182 CATGTCATGTG
1 CATATCA--TA
76794193 CATATCATA
1 CATATCATA
76794202 CATATCAT
1 CATATCAT
76794210 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:76794290 original size:25 final size:24
Alignment explanation
Indices: 76794248--76794295 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
76794238 ATATATAAAC
* * *
76794248 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAACGGTCA-TTTTA
76794273 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
76794296 CATGTTATGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:76796739 original size:56 final size:56
Alignment explanation
Indices: 76796653--76796828 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
76796643 ACAAGGGATG
*
76796653 ATGGGCAAAACATGTAATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76796709 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
76796765 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76796821 ATGGGCAA
1 ATGGGCAA
76796829 TAAACTAATA
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 118 1.00
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:76798061 original size:21 final size:21
Alignment explanation
Indices: 76798035--76798076 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
76798025 CGAGATACTA
*
76798035 ATTCCGGGCTAAGTCCGAAGG
1 ATTCCGGGCTAAGCCCGAAGG
76798056 ATTCCGGGCTAAGCCCGAAGG
1 ATTCCGGGCTAAGCCCGAAGG
76798077 CATTGGTGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.26, G:0.33, T:0.17
Consensus pattern (21 bp):
ATTCCGGGCTAAGCCCGAAGG
Found at i:76798134 original size:100 final size:103
Alignment explanation
Indices: 76797948--76798156 Score: 257
Period size: 100 Copynumber: 2.1 Consensus size: 103
76797938 CATGGTTATT
* * *
76797948 CGAATGATGTCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCG
1 CGAAGGATGTCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCG
* *
76798013 AAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGT-C
66 AAGGCATTTGTGCGAGATACTAAATCCGAGCTAAGTCC
* * **
76798050 CGAAGGAT-TCCGGGCTAAG-CCCGAAGGCATTGGTGC-AAGTTACTAAATCCGGGTTAAG-TCC
1 CGAAGGATGTCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCAAATCCGGACTAAGAT-C
* * *
76798111 CGATGGCATTTGTGCGAGTTACTAAATCCGAGTTAAGTCC
64 CGAAGGCATTTGTGCGAGATACTAAATCCGAGCTAAGTCC
76798151 CGAAGG
1 CGAAGG
76798157 CATTTGTGCG
Statistics
Matches: 92, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
99 1 0.01
100 60 0.65
101 24 0.26
102 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (103 bp):
CGAAGGATGTCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCG
AAGGCATTTGTGCGAGATACTAAATCCGAGCTAAGTCC
Found at i:76798209 original size:40 final size:40
Alignment explanation
Indices: 76798058--76798202 Score: 204
Period size: 40 Copynumber: 3.6 Consensus size: 40
76798048 TCCGAAGGAT
* *
76798058 TCCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
76798097 TCCGGGTTAAGTCCCGATGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
76798137 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
76798178 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76798203 AACGAGTAGC
Statistics
Matches: 95, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 10 0.11
40 82 0.86
41 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76798209 original size:80 final size:79
Alignment explanation
Indices: 76798065--76798235 Score: 204
Period size: 80 Copynumber: 2.2 Consensus size: 79
76798055 GATTCCGGGC
* * **
76798065 TAAG-CCCGAAGGCATTGGTGCAAGTTACTAAATCCGGGTTAAGTCCCGATGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTGGTGCAAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
76798129 TTA-CTAAATCCGAGT
66 -TAGCTAAATCCG-GT
* * *
76798144 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTCCCGAAGGCATTGGTGCAAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGA
*
76798208 GTAGCTATATCCGGT
65 GTAGCTAAATCCGGT
* *
76798223 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
76798236 TACGTGATTT
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
79 19 0.24
80 57 0.72
81 3 0.04
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTGGTGCAAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
TAGCTAAATCCGGT
Found at i:76804086 original size:56 final size:56
Alignment explanation
Indices: 76804000--76804174 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
76803990 ACAAGGGATG
76804000 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76804056 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGG-AAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
76804111 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76804167 ATGGGCAA
1 ATGGGCAA
76804175 TAAACTAATA
Statistics
Matches: 117, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
55 55 0.47
56 62 0.53
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:76805534 original size:40 final size:40
Alignment explanation
Indices: 76805303--76805527 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
76805293 TCGAATGATG
* * * *
76805303 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
76805343 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
76805383 TCCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76805422 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76805462 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
76805503 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76805528 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76805549 original size:119 final size:119
Alignment explanation
Indices: 76805303--76805560 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
76805293 TCGAATGATG
* *
76805303 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
76805368 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTTACTAAA
* * * **
76805422 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * *
76805485 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACAAGTTA-CTAAA
* *
76805542 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
76805561 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.72
120 30 0.26
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTTACTAAA
Found at i:76812627 original size:20 final size:21
Alignment explanation
Indices: 76812571--76812701 Score: 96
Period size: 20 Copynumber: 6.5 Consensus size: 21
76812561 GATGCAAAAA
* *
76812571 CAGGGGCACCA-AAGCGCAAT
1 CAGGGGCACCAGATGTGCAAT
* **
76812591 CAGGAGCATGAG-TGTGCAAT
1 CAGGGGCACCAGATGTGCAAT
* *
76812611 CATGGGCACCAGA-GTGCAGT
1 CAGGGGCACCAGATGTGCAAT
* *
76812631 CAGGGGCACGA-ATGTGCTAT
1 CAGGGGCACCAGATGTGCAAT
* * *
76812651 CAGAGGCACTAGA-GTGCATT
1 CAGGGGCACCAGATGTGCAAT
76812671 CAGGGGCA-CAGATGTGCAAAT
1 CAGGGGCACCAGATGTGC-AAT
76812692 -AGGGGCACCA
1 CAGGGGCACCA
76812702 AAGTGTTCAT
Statistics
Matches: 83, Mismatches: 21, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
19 4 0.05
20 74 0.89
21 5 0.06
ACGTcount: A:0.30, C:0.22, G:0.34, T:0.15
Consensus pattern (21 bp):
CAGGGGCACCAGATGTGCAAT
Found at i:76812634 original size:40 final size:39
Alignment explanation
Indices: 76812574--76812706 Score: 108
Period size: 40 Copynumber: 3.3 Consensus size: 39
76812564 GCAAAAACAG
* * * *
76812574 GGGCACCAAAGCGCAATCAGGAGCATGAGTGTGCAATCA
1 GGGCACCAGAGTGCAATCAGGAGCACGAATGTGCAATCA
* * *
76812613 TGGGCACCAGAGTGCAGTCAGGGGCACGAATGTGCTATCA
1 -GGGCACCAGAGTGCAATCAGGAGCACGAATGTGCAATCA
* * *
76812653 GAGGCACTAGAGTGCATTCAGGGGCAC-AGATGTGCAAAT-A
1 G-GGCACCAGAGTGCAATCAGGAGCACGA-ATGTGC-AATCA
*
76812693 GGGGCACCAAAGTG
1 -GGGCACCAGAGTG
76812707 TTCATAGGGG
Statistics
Matches: 77, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
39 2 0.03
40 72 0.94
41 3 0.04
ACGTcount: A:0.30, C:0.21, G:0.34, T:0.15
Consensus pattern (39 bp):
GGGCACCAGAGTGCAATCAGGAGCACGAATGTGCAATCA
Found at i:76812789 original size:40 final size:40
Alignment explanation
Indices: 76812673--76812799 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
76812663 AGTGCATTCA
* *
76812673 GGGGCACAGA-TGTGCAAATAGGGGCACCAAAGTGTTCA-T
1 GGGGCACA-ATTGTGCAAATAGGGACACCAAAGTGTTTACT
* * * *
76812712 AGGGGTACAGTTGTGCAAACAGGGACACCAATGTGTTTACT
1 -GGGGCACAATTGTGCAAATAGGGACACCAAAGTGTTTACT
* * * *
76812753 GGGGCACAATTGTGAAAATAGGGACATCAAAGTGTTTTCA
1 GGGGCACAATTGTGCAAATAGGGACACCAAAGTGTTTACT
76812793 GGGGCAC
1 GGGGCAC
76812800 CGAGGTGCAA
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
40 70 0.99
41 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.21
Consensus pattern (40 bp):
GGGGCACAATTGTGCAAATAGGGACACCAAAGTGTTTACT
Found at i:76813380 original size:17 final size:17
Alignment explanation
Indices: 76813358--76813396 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
76813348 AAATTTCCTT
76813358 ATCAATTCTAA-CATTTA
1 ATCAATTC-AATCATTTA
*
76813375 ATCAATTCAATCCTTTA
1 ATCAATTCAATCATTTA
76813392 ATCAA
1 ATCAA
76813397 AAAGTAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (17 bp):
ATCAATTCAATCATTTA
Found at i:76814219 original size:54 final size:55
Alignment explanation
Indices: 76814137--76814281 Score: 215
Period size: 54 Copynumber: 2.7 Consensus size: 55
76814127 GAGTGAGATG
* *
76814137 CTTACAAAAGCTCATGCTCTCAAAGGAGAATGTAGAGTGGGACTTATAAAAAA-A
1 CTTACAAAAGCTCATGCTCTCAAAGGAGAACGTAGAGTGAGACTTATAAAAAACA
76814191 CTTACAAAAGCTCATGCTCTCAAAGGAGAACGTAGAGTGAGACTTATAAAAAACA
1 CTTACAAAAGCTCATGCTCTCAAAGGAGAACGTAGAGTGAGACTTATAAAAAACA
* * * *
76814246 CTCACAAAAGCCCATGCTCT--AAGGAGCACGCAGAGT
1 CTTACAAAAGCTCATGCTCTCAAAGGAGAACGTAGAGT
76814282 TAGGCTCATA
Statistics
Matches: 84, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
53 14 0.17
54 51 0.61
55 19 0.23
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (55 bp):
CTTACAAAAGCTCATGCTCTCAAAGGAGAACGTAGAGTGAGACTTATAAAAAACA
Found at i:76814309 original size:95 final size:95
Alignment explanation
Indices: 76814194--76814422 Score: 307
Period size: 95 Copynumber: 2.4 Consensus size: 95
76814184 AAAAAAACTT
* * *
76814194 ACAAAAGCTCATGCTCTCAAAGGAGAACGTAGAGTGAGACTTATAAAAAACACTCACAAAAGCCC
1 ACAAAGGCTCATGCTCTCAAAGGAGCACATAGAGTGAGACTTATAAAAAA-ACTCACAAAAGCCC
* * * *
76814259 ATGCTCT-AAGGAGCACGCAGAGTTAGGCTC
65 ATGCTCTCAAGGAGCACACAGAGTGAAGCTA
* * * * *
76814289 ATAAAGGCTCATGCTCTCAAAGGAGCACACAGAGTGAGACTTATCACAAAACTCACAAGAGCCCA
1 ACAAAGGCTCATGCTCTCAAAGGAGCACATAGAGTGAGACTTATAAAAAAACTCACAAAAGCCCA
* *
76814354 TGCTCTCAAGGGGCACATAGAGTGAAGCTA
66 TGCTCTCAAGGAGCACACAGAGTGAAGCTA
*
76814384 ACAAATGCTCATGCTCTCAAAGGAGCACATAGAGTGAGA
1 ACAAAGGCTCATGCTCTCAAAGGAGCACATAGAGTGAGA
76814423 ATTAAAATTG
Statistics
Matches: 116, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
94 20 0.17
95 96 0.83
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (95 bp):
ACAAAGGCTCATGCTCTCAAAGGAGCACATAGAGTGAGACTTATAAAAAAACTCACAAAAGCCCA
TGCTCTCAAGGAGCACACAGAGTGAAGCTA
Found at i:76824799 original size:40 final size:40
Alignment explanation
Indices: 76824718--76824898 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
76824708 AAACCAAGTA
** * *
76824718 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
76824757 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
76824797 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
76824837 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
76824877 CCTCCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
76824899 CAATCCGAAT
Statistics
Matches: 130, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 26 0.20
40 104 0.80
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:76833874 original size:33 final size:33
Alignment explanation
Indices: 76833832--76833898 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
76833822 TTCATGTAAG
76833832 ACCATAGCTGGGCTATCAGCATCAATATGTGAT
1 ACCATAGCTGGGCTATCAGCATCAATATGTGAT
76833865 ACCATAGCTGGGCTATCAGCATCAATATGTGAT
1 ACCATAGCTGGGCTATCAGCATCAATATGTGAT
76833898 A
1 A
76833899 ATATGTAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (33 bp):
ACCATAGCTGGGCTATCAGCATCAATATGTGAT
Found at i:76834047 original size:33 final size:33
Alignment explanation
Indices: 76834005--76834071 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
76833995 GACGAGAAAG
76834005 AATGTGTGATTGAATTAAGTGATACAGGTACGT
1 AATGTGTGATTGAATTAAGTGATACAGGTACGT
76834038 AATGTGTGATTGAATTAAGTGATACAGGTACGT
1 AATGTGTGATTGAATTAAGTGATACAGGTACGT
76834071 A
1 A
76834072 CGAGATTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (33 bp):
AATGTGTGATTGAATTAAGTGATACAGGTACGT
Found at i:76836778 original size:43 final size:44
Alignment explanation
Indices: 76836673--76836781 Score: 125
Period size: 43 Copynumber: 2.5 Consensus size: 44
76836663 ATTAGTTTAC
* * *
76836673 CGATATGTGATTACGTGTAAGA-ATATGTCTGGGACATTGGCAT
1 CGATAAGTGATTACGTGTAAGACACATGTCTGGGACAGTGGCAT
* *
76836716 CGTTATA-TGATTTCGTGTAAGACACA-GTCTGGGACAGTGGCAT
1 CGATA-AGTGATTACGTGTAAGACACATGTCTGGGACAGTGGCAT
* *
76836759 CGATAAGTGATAACATGTAAGAC
1 CGATAAGTGATTACGTGTAAGAC
76836782 CATATCGGGG
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
42 1 0.02
43 51 0.94
44 2 0.04
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (44 bp):
CGATAAGTGATTACGTGTAAGACACATGTCTGGGACAGTGGCAT
Found at i:76858687 original size:34 final size:34
Alignment explanation
Indices: 76858642--76858715 Score: 121
Period size: 34 Copynumber: 2.2 Consensus size: 34
76858632 AGTGCCACGA
76858642 TTCACAACTCAGTATGGAAACACCATACCTACGT
1 TTCACAACTCAGTATGGAAACACCATACCTACGT
* * *
76858676 TTCACAGCTCAGTATGGAAATACCATACCTACTT
1 TTCACAACTCAGTATGGAAACACCATACCTACGT
76858710 TTCACA
1 TTCACA
76858716 CTTTGCCATG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.27
Consensus pattern (34 bp):
TTCACAACTCAGTATGGAAACACCATACCTACGT
Found at i:76858800 original size:27 final size:27
Alignment explanation
Indices: 76858770--76858834 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
76858760 GATCACTGAA
* *
76858770 CACTTTGCTATGTTTGGCACACTATAT
1 CACTTTGCCATGATTGGCACACTATAT
*
76858797 CACTTTGCCATGATTGGCACACTTTAT
1 CACTTTGCCATGATTGGCACACTATAT
76858824 CACTTTGCCAT
1 CACTTTGCCAT
76858835 AGTTCAACTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (27 bp):
CACTTTGCCATGATTGGCACACTATAT
Found at i:76858978 original size:31 final size:31
Alignment explanation
Indices: 76858898--76859102 Score: 232
Period size: 31 Copynumber: 6.5 Consensus size: 31
76858888 AGTGTAGCTA
* *
76858898 AAGCTACCACTTATCACTTG-TCACTTGTAGCCG
1 AAGCTACCACTTTTCAC-TGATCA--GGTAGCCG
* * * * **
76858931 AAGCGACCAATATTCACTGATCAGTTAGCTA
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
* * *
76858962 AAGCTACCACTTTTCACTAATTAGGTAGCCA
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
* *
76858993 AAGCTACTACTTTTCACTCATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
*
76859024 AAGCTACCACTTTTCACTGATCAAGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
* *
76859055 AAGCTACCACTTTTCACTGATTAGGTACCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
76859086 AAGCTACCACTTTTCAC
1 AAGCTACCACTTTTCAC
76859103 ATTGTACACA
Statistics
Matches: 146, Mismatches: 25, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
31 128 0.88
32 2 0.01
33 16 0.11
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (31 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCCG
Found at i:76859059 original size:93 final size:93
Alignment explanation
Indices: 76858897--76859102 Score: 261
Period size: 93 Copynumber: 2.2 Consensus size: 93
76858887 AAGTGTAGCT
* ** * *
76858897 AAAGCTACCACTTATCACTTGTCACTTGTAGCCGAAGCGACCAATATTCACTGATCAGTTAGCTA
1 AAAGCTACCACTTTTCACTCATCA--GGTAGCCGAAGCGACCAATATTCACTGATCAGTTAGCCA
*
76858962 AAGCTACCACTTTTCACTAATTAGGTAGCC
64 AAGCTACCACTTTTCACTAATTAGGTACCC
* * * * *
76858992 AAAGCTACTACTTTTCACTCATCAGGTAGCCGAAGCTACCACTTTTCACTGATCAAG-TAGCCGA
1 AAAGCTACCACTTTTCACTCATCAGGTAGCCGAAGCGACCAATATTCACTGATC-AGTTAGCCAA
*
76859056 AGCTACCACTTTTCACTGATTAGGTACCC
65 AGCTACCACTTTTCACTAATTAGGTACCC
*
76859085 GAAGCTACCACTTTTCAC
1 AAAGCTACCACTTTTCAC
76859103 ATTGTACACA
Statistics
Matches: 96, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
93 74 0.77
94 2 0.02
95 20 0.21
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (93 bp):
AAAGCTACCACTTTTCACTCATCAGGTAGCCGAAGCGACCAATATTCACTGATCAGTTAGCCAAA
GCTACCACTTTTCACTAATTAGGTACCC
Found at i:76859179 original size:33 final size:33
Alignment explanation
Indices: 76859104--76859207 Score: 131
Period size: 33 Copynumber: 3.2 Consensus size: 33
76859094 ACTTTTCACA
* ** *
76859104 TTGTACACACAAGGCATACATTTCCTTTTCAAG
1 TTGTACACACAAAGTGTACATTTCCTTTTTAAG
*
76859137 -TGTACACACAAAGTGTACGTTTCCTTTTTAAG
1 TTGTACACACAAAGTGTACATTTCCTTTTTAAG
*
76859169 TTGTACACACACAGTGTACATTTCCTTTTCT-AG
1 TTGTACACACAAAGTGTACATTTCCTTTT-TAAG
76859202 TTGTAC
1 TTGTAC
76859208 CTTTTAGGTA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
32 27 0.44
33 34 0.55
34 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (33 bp):
TTGTACACACAAAGTGTACATTTCCTTTTTAAG
Found at i:76859228 original size:33 final size:32
Alignment explanation
Indices: 76859184--76859264 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 32
76859174 CACACACAGT
*
76859184 GTACATTTCCTTTTCTAGTTGT-ACCTTTT-AG
1 GTACATTTCCTTTTCAAG-TGTCACCTTTTCAG
76859215 GTACATGTATCCTTTTCAAGTGTCACCTTTTCAG
1 GTACAT-T-TCCTTTTCAAGTGTCACCTTTTCAG
*
76859249 GTGA-AATTCCTTTTCA
1 GT-ACATTTCCTTTTCA
76859265 TAATGAGATC
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
31 6 0.14
32 13 0.30
33 18 0.42
34 5 0.12
35 1 0.02
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.46
Consensus pattern (32 bp):
GTACATTTCCTTTTCAAGTGTCACCTTTTCAG
Found at i:76860894 original size:11 final size:11
Alignment explanation
Indices: 76860878--76860930 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
76860868 TATACTAAAT
76860878 AAATAATAATA
1 AAATAATAATA
76860889 AAATAATAAT-
1 AAATAATAATA
* *
76860899 AAATATCTCATTA
1 AAATA-AT-AATA
*
76860912 AAATATTAATA
1 AAATAATAATA
76860923 AAATAATA
1 AAATAATA
76860931 TTTATCTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
10 5 0.15
11 21 0.62
12 3 0.09
13 5 0.15
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (11 bp):
AAATAATAATA
Found at i:76860937 original size:31 final size:33
Alignment explanation
Indices: 76860878--76860943 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
76860868 TATACTAAAT
*
76860878 AAATAATAATAAAATAATAATAAATATCTCATTA
1 AAATAATAATAAAATAATAAT-AATATCTAATTA
* *
76860912 AAATATTAATAAAATAAT-AT-TTATCTAATTA
1 AAATAATAATAAAATAATAATAATATCTAATTA
76860943 A
1 A
76860944 TTAATTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 10 0.34
33 2 0.07
34 17 0.59
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (33 bp):
AAATAATAATAAAATAATAATAATATCTAATTA
Found at i:76862996 original size:6 final size:6
Alignment explanation
Indices: 76862962--76863112 Score: 89
Period size: 6 Copynumber: 24.3 Consensus size: 6
76862952 AAGAAACATT
* * *
76862962 ATCAGA A-CTAGA ATTAGA ATCAAA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
76863011 ATCAGA ATCAGT ATCAGGTA AT-AGA ATC-GAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAG-A ATCAGA ATCAGA ATCA-G-A
* * *
76863062 A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAAA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATC-AGA ATCAGA
76863111 AT
1 AT
76863113 GTGAATGCAA
Statistics
Matches: 112, Mismatches: 16, Indels: 34
0.69 0.10 0.21
Matches are distributed among these distances:
5 10 0.09
6 80 0.71
7 17 0.15
8 5 0.04
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:76863012 original size:31 final size:31
Alignment explanation
Indices: 76862946--76863112 Score: 196
Period size: 31 Copynumber: 5.4 Consensus size: 31
76862936 TAACCCATTA
* * *
76862946 CAGAATAAGAAACATTATCA-G-AACTAGAAT
1 CAGAATCAGAATCAGTATCAGGTAAC-AGAAT
* * * *
76862976 TAGAATCAAAATCAGAATCAGGTGACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
*
76863007 CAGAATCAGAATCAGTATCAGGTAATAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
76863038 C-GAAATCAGAATCAGTATCAGGTAACAGAAT
1 CAG-AATCAGAATCAGTATCAGGTAACAGAAT
*
76863069 CAAAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
*
76863100 CAAAAATCAGAAT
1 C-AGAATCAGAAT
76863113 GTGAATGCAA
Statistics
Matches: 118, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
30 15 0.13
31 90 0.76
32 13 0.11
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (31 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAAT
Found at i:76863068 original size:19 final size:19
Alignment explanation
Indices: 76863044--76863101 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
76863034 GAATCGAAAT
76863044 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
76863063 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
76863075 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
76863094 CAGAATCA
1 CAGAATCA
76863102 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:76863312 original size:26 final size:27
Alignment explanation
Indices: 76863249--76863322 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
76863239 GCTCAGTTAT
* *
76863249 CAGATATTATGGCAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
76863276 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
76863302 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
76863323 TTAACAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 20 0.47
27 23 0.53
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:76863509 original size:22 final size:21
Alignment explanation
Indices: 76863481--76863545 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
76863471 GCAAATACGT
76863481 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
76863503 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
76863525 TTGACACAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
76863546 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:76864356 original size:27 final size:27
Alignment explanation
Indices: 76864000--76864348 Score: 441
Period size: 27 Copynumber: 12.9 Consensus size: 27
76863990 GGGTTTCTCG
* *
76864000 GTAATTCTACCCTACAGGGCTATTACA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
76864027 GT-ATTCCTACCCTACAAGGGTATTTCA
1 GTAATT-CTACCCTACAGGGGTATTTCA
* *
76864054 GTAATTTTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
76864081 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
76864108 GTCATTCTACCTTACAGGGATATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
76864134 GATAATTCTACCCTACAGAGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
76864162 GTAATTCTACCATATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
76864189 ATAATTCTACCTTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
76864216 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
76864243 GTAATTATACCTTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
76864270 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
76864297 GTAATTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
76864324 GTAATTCTACACTACAGGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTT
76864349 TGGCAATTTC
Statistics
Matches: 276, Mismatches: 42, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
26 4 0.01
27 268 0.97
28 4 0.01
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:76864372 original size:54 final size:52
Alignment explanation
Indices: 76864042--76864411 Score: 261
Period size: 54 Copynumber: 6.9 Consensus size: 52
76864032 CCTACCCTAC
* * **
76864042 AAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTCGGTAA-TTCTACCCT
1 AAGGGTATTTCAGTAATTCTACACTACAGGGGTATTTCGGTAATTTC-ACATT
* * * **
76864094 ACAGGGGTATTTCAGTCATTCTAC-CTTACAGGGATATTTCGATAA-TTCTACCCT
1 A-A-GGGTATTTCAGTAATTCTACAC-TACAGGGGTATTTCGGTAATTTC-ACATT
* ** *
76864148 ACAGAGGTATTTCAGTAATTCTAC-CATATAGGGGTATTTCAATAA-TTCTACCTTAT
1 A-AG-GGTATTTCAGTAATTCTACAC-TACAGGGGTATTTCGGTAATTTC-A-CAT-T
* *
76864204 AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTAT-ACCTTAT
1 AAGGGTATTTCAGTAATTCTACACTACAGGGGTATTTCGGTAATT-TCA-CAT-T
* * *
76864258 AAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTAA-TTCTACCTT
1 AAGGGTATTTCAGTAATTCTACACTACAGGGGTATTTCGGTAATTTC-ACATT
* *
76864310 ACAAGGGTATTTCAGTAATTCTACACTACAGGGGTATTTTGGCAATTTCACAAATT
1 --AAGGGTATTTCAGTAATTCTACACTACAGGGGTATTTCGGTAATTTCAC--ATT
* ** * * * *
76864366 AGGGGTATTTTGGTAATTTTACA-AACCAGAGGTATTTTGGTAATTT
1 AAGGGTATTTCAGTAATTCTACACTA-CAGGGGTATTTCGGTAATTT
76864412 TATTGATCGA
Statistics
Matches: 273, Mismatches: 28, Indels: 32
0.82 0.08 0.10
Matches are distributed among these distances:
52 3 0.01
53 7 0.03
54 250 0.92
55 8 0.03
56 5 0.02
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (52 bp):
AAGGGTATTTCAGTAATTCTACACTACAGGGGTATTTCGGTAATTTCACATT
Found at i:76864412 original size:27 final size:28
Alignment explanation
Indices: 76864341--76864456 Score: 105
Period size: 27 Copynumber: 4.3 Consensus size: 28
76864331 TACACTACAG
* * **
76864341 GGGTATTTTGGCAATTTCACAAATTAG-
1 GGGTATTTTGGTAATTTTACAAACCAGA
76864368 GGGTATTTTGGTAATTTTACAAACCAGA
1 GGGTATTTTGGTAATTTTACAAACCAGA
*** *
76864396 -GGTATTTTGGTAATTTTATTGATC-GA
1 GGGTATTTTGGTAATTTTACAAACCAGA
**
76864422 GGGTATTTTGGTAATTTTGTAAACCA-A
1 GGGTATTTTGGTAATTTTACAAACCAGA
*
76864449 TGGTATTT
1 GGGTATTT
76864457 CAATAATTTT
Statistics
Matches: 73, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
26 2 0.03
27 71 0.97
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (28 bp):
GGGTATTTTGGTAATTTTACAAACCAGA
Found at i:76864426 original size:54 final size:54
Alignment explanation
Indices: 76864368--76864480 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
76864358 CACAAATTAG
*** **
76864368 GGGTATTTTGGTAATTTTACAAACCAGA-GGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTACAAACCA-ATGGTATTTCAATAATTTTATAAATCGA
**
76864422 GGGTATTTTGGTAATTTTGTAAACCAATGGTATTTCAATAATTTTATAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAATGGTATTTCAATAATTTTATAAATCGA
76864476 GGGTA
1 GGGTA
76864481 AAATGGTAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.02
54 50 0.98
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAATGGTATTTCAATAATTTTATAAATCGA
Found at i:76864480 original size:27 final size:27
Alignment explanation
Indices: 76864406--76864480 Score: 69
Period size: 27 Copynumber: 2.8 Consensus size: 27
76864396 GGTATTTTGG
** ***
76864406 TAATTTTATTGATCGAGGGTATTTTGG
1 TAATTTTATAAATCGAGGGTATTTCAA
* * * *
76864433 TAATTTTGTAAACCAATGGTATTTCAA
1 TAATTTTATAAATCGAGGGTATTTCAA
76864460 TAATTTTATAAATCGAGGGTA
1 TAATTTTATAAATCGAGGGTA
76864481 AAATGGTAAT
Statistics
Matches: 35, Mismatches: 13, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.43
Consensus pattern (27 bp):
TAATTTTATAAATCGAGGGTATTTCAA
Found at i:76864488 original size:54 final size:54
Alignment explanation
Indices: 76864406--76864616 Score: 161
Period size: 54 Copynumber: 3.9 Consensus size: 54
76864396 GGTATTTTGG
** *** * ***
76864406 TAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTCAA
1 TAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAACCAAGGGTAAGACAA
* * *
76864460 TAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAGACGA
1 TAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAACCAAGGGTAAGACAA
* * * * ** * ***
76864514 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATAAAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAACCAAGGGTAAGACAA
* * * * * * *
76864568 TAATTCTATAAATCTAGGGTAAAACGATAATTCTGTAAATCGAGGGTAA
1 TAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAACCAAGGGTAA
76864617 AATGATAATT
Statistics
Matches: 129, Mismatches: 28, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 129 1.00
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (54 bp):
TAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAACCAAGGGTAAGACAA
Found at i:76864490 original size:27 final size:27
Alignment explanation
Indices: 76864459--76864630 Score: 218
Period size: 27 Copynumber: 6.4 Consensus size: 27
76864449 TGGTATTTCA
*
76864459 ATAATTTTATAAATCGAGGGTAAAATG
1 ATAATTCTATAAATCGAGGGTAAAATG
* * * * *
76864486 GTAATTTTGTAAATCGAGGGTAAGACG
1 ATAATTCTATAAATCGAGGGTAAAATG
*
76864513 ATAATTCTGTAAATCGAGGGTAAAATG
1 ATAATTCTATAAATCGAGGGTAAAATG
* **
76864540 GTAATTCTATAAATAAAGGGTAAAATG
1 ATAATTCTATAAATCGAGGGTAAAATG
* * *
76864567 GTAATTCTATAAATCTAGGGTAAAACG
1 ATAATTCTATAAATCGAGGGTAAAATG
*
76864594 ATAATTCTGTAAATCGAGGGTAAAATG
1 ATAATTCTATAAATCGAGGGTAAAATG
76864621 ATAATTCTAT
1 ATAATTCTAT
76864631 CTTACAGGAG
Statistics
Matches: 125, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 125 1.00
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.31
Consensus pattern (27 bp):
ATAATTCTATAAATCGAGGGTAAAATG
Found at i:76864669 original size:81 final size:81
Alignment explanation
Indices: 76864459--76864630 Score: 254
Period size: 81 Copynumber: 2.1 Consensus size: 81
76864449 TGGTATTTCA
* ** * * *
76864459 ATAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAGACGATAATTCTGTA
1 ATAATTCTATAAATAAAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTA
76864524 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * *
76864540 GTAATTCTATAAATAAAGGGTAAAATGGTAATTCTATAAATCTAGGGTAAAACGATAATTCTGTA
1 ATAATTCTATAAATAAAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTA
76864605 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
76864621 ATAATTCTAT
1 ATAATTCTAT
76864631 CTTACAGGAG
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.31
Consensus pattern (81 bp):
ATAATTCTATAAATAAAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTA
AATCGAGGGTAAAATG
Found at i:76864670 original size:27 final size:27
Alignment explanation
Indices: 76864640--76864815 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
76864630 TCTTACAGGA
76864640 GTATTTCAGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
76864667 GTATTTTAGTAATTTTAC-AATCGACG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
76864693 GTATTTCAGTAATTTTATAAA-CTGGGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
* * *
76864720 GTACTTT-GGTAATTTTGCAAGTCGAGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
* *
76864747 GTATTTCAGTAATTTTGCAATTCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
76864774 GTATTTCAATAATTTTGCAAA-CTTAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
*
76864801 GTATTTCGGTAATTT
1 GTATTTCAGTAATTT
76864816 GGTAAACTAA
Statistics
Matches: 125, Mismatches: 18, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
26 28 0.22
27 93 0.74
28 4 0.03
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.41
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:76864709 original size:53 final size:54
Alignment explanation
Indices: 76864640--76864789 Score: 187
Period size: 53 Copynumber: 2.8 Consensus size: 54
76864630 TCTTACAGGA
76864640 GTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAA-TCGACG
1 GTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAGTCGACG
* * * * * *
76864693 GTATTTCAGTAATTTTATAAA-CTGGGGGTACTTTGGTAATTTTGCAAGTCGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGGGTATTTTAGTAATTTTACAAGTCGACG
* * * *
76864747 GTATTTCAGTAATTTTGCAATTCGAGGGTATTTCAATAATTTT
1 GTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTT
76864790 GCAAACTTAG
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
52 1 0.01
53 40 0.50
54 38 0.47
55 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (54 bp):
GTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAGTCGACG
Found at i:76864734 original size:80 final size:81
Alignment explanation
Indices: 76864640--76864815 Score: 230
Period size: 80 Copynumber: 2.2 Consensus size: 81
76864630 TCTTACAGGA
* * *
76864640 GTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAA-TCGACGGTATTTCAGTA
1 GTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATTCGACGGTATTTCAATA
* *
76864704 ATTTTATAAACTGGGG
66 ATTTTACAAACTGAGG
* * * *
76864720 GTACTTT-GGTAATTTTGCAAGTCGAGGGTATTTCAGTAATTTTGCAATTCGAGGGTATTTCAAT
1 GTA-TTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATTCGACGGTATTTCAAT
* *
76864784 AATTTTGCAAACTTAGG
65 AATTTTACAAACTGAGG
76864801 GTATTTCGGTAATTT
1 GTATTTCGGTAATTT
76864816 GGTAAACTAA
Statistics
Matches: 82, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
80 41 0.50
81 41 0.50
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.41
Consensus pattern (81 bp):
GTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATTCGACGGTATTTCAATA
ATTTTACAAACTGAGG
Found at i:76866411 original size:42 final size:42
Alignment explanation
Indices: 76866305--76866472 Score: 135
Period size: 43 Copynumber: 3.9 Consensus size: 42
76866295 CTGGTATGTA
* * *
76866305 ATTTCATGTAAGACCAC-ATCTGGGACATTGGCATTG-ATTTGAG
1 ATTTCATGTAAGACC-CTGTCTAGGACATTGGCATCGTATTT--G
* * * *
76866348 ATTTGCGTATAAGACCATGTCTAGGACATTGGCATCGTATATG
1 ATTT-CATGTAAGACCCTGTCTAGGACATTGGCATCGTATTTG
* * *
76866391 ATTTCATGTAAGACCCTGTCTAGGATAGTGGCATCAATATTTG
1 ATTTCATGTAAGACCCTGTCTAGGACATTGGCATC-GTATTTG
* * * *
76866434 ATTACATGTAAGA-CCTCGTCTGGGACGTTGGCATTGTAT
1 ATTTCATGTAAGACCCT-GTCTAGGACATTGGCATCGTAT
76866473 GAGCTTTTTG
Statistics
Matches: 99, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
42 32 0.32
43 39 0.39
44 25 0.25
45 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (42 bp):
ATTTCATGTAAGACCCTGTCTAGGACATTGGCATCGTATTTG
Found at i:76866448 original size:43 final size:42
Alignment explanation
Indices: 76866357--76866448 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
76866347 GATTTGCGTA
* * *
76866357 TAAGACCATGTCTAGGACATTGGCATCGTATATGATTTCATG
1 TAAGACCATGTCTAGGACAGTGGCATCATATATGATTACATG
* * *
76866399 TAAGACCCTGTCTAGGATAGTGGCATCAATATTTGATTACATG
1 TAAGACCATGTCTAGGACAGTGGCATC-ATATATGATTACATG
76866442 TAAGACC
1 TAAGACC
76866449 TCGTCTGGGA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 24 0.56
43 19 0.44
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (42 bp):
TAAGACCATGTCTAGGACAGTGGCATCATATATGATTACATG
Found at i:76870635 original size:43 final size:43
Alignment explanation
Indices: 76870543--76870636 Score: 98
Period size: 43 Copynumber: 2.2 Consensus size: 43
76870533 TGTTATTACG
* * * * ** *
76870543 TGTAAGACCATGTTTGGGACATTGGCATTGCTATATGATTTCG
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATATGATAACA
* * *
76870586 TATAAGACCTTGTCTGGGACAGTGGCATCGATATGTGATAACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATATGATAACA
76870629 TGTAAGAC
1 TGTAAGAC
76870637 TATATCCGGG
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGATATATGATAACA
Found at i:76881528 original size:17 final size:17
Alignment explanation
Indices: 76881503--76881563 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
76881493 ATGAATTGCA
76881503 ATATGGTATGTGATGTAT
1 ATAT-GTATGTGATGTAT
***
76881521 ATATGTATGCCTTGTGA-
1 ATATGTATGTGATGT-AT
* *
76881538 ATTTTTATGTGATGTAT
1 ATATGTATGTGATGTAT
76881555 ATATGTATG
1 ATATGTATG
76881564 CCTTGTGAAT
Statistics
Matches: 31, Mismatches: 10, Indels: 5
0.67 0.22 0.11
Matches are distributed among these distances:
16 1 0.03
17 25 0.81
18 5 0.16
ACGTcount: A:0.26, C:0.03, G:0.23, T:0.48
Consensus pattern (17 bp):
ATATGTATGTGATGTAT
Found at i:76881547 original size:34 final size:34
Alignment explanation
Indices: 76881508--76881610 Score: 179
Period size: 34 Copynumber: 3.0 Consensus size: 34
76881498 TTGCAATATG
76881508 GTATGTGATGTATATATGTATGCCTTGTGAATTT
1 GTATGTGATGTATATATGTATGCCTTGTGAATTT
*
76881542 TTATGTGATGTATATATGTATGCCTTGTGAATTT
1 GTATGTGATGTATATATGTATGCCTTGTGAATTT
* *
76881576 GTGTGTGATGCATATATGTATGCCTTGTGAATTT
1 GTATGTGATGTATATATGTATGCCTTGTGAATTT
76881610 G
1 G
76881611 GTAATCTTGG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 65 1.00
ACGTcount: A:0.22, C:0.07, G:0.24, T:0.47
Consensus pattern (34 bp):
GTATGTGATGTATATATGTATGCCTTGTGAATTT
Found at i:76887852 original size:17 final size:17
Alignment explanation
Indices: 76887832--76887864 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
76887822 ACAATTTGGT
76887832 CCTTTTCCTAATTAAAA
1 CCTTTTCCTAATTAAAA
76887849 CCTTTTCCTAATTAAA
1 CCTTTTCCTAATTAAA
76887865 CACATATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.42
Consensus pattern (17 bp):
CCTTTTCCTAATTAAAA
Found at i:76891157 original size:48 final size:49
Alignment explanation
Indices: 76891083--76891349 Score: 314
Period size: 48 Copynumber: 5.6 Consensus size: 49
76891073 TAAAGTACCA
*
76891083 ATGCCATGTCCTC-GACATGGTCTTACATGAATC-CACATATCATCGCCG
1 ATGCCATGTCC-CAGACATGGTCTTACATGAAGCACACATATCATCGCCG
* *
76891131 ATGCAATGTCCCAGACATGGTTTTACACTG--GCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACA-TGAAGCACACATATCATCGCCG
* * **
76891179 ATGCCATGTCCCAGACATGGTCTTACA-CAGGCACACATATCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACATGAAGCACACATATCATCGCCG
* * * *
76891227 ATGCCATGTCCCAAACATGGTCTTACAT-AGGCACATATATCATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACATGAAGCACACATATCATCGCCG
* * * * *
76891275 ATGCCATGTCCCAGACATGGTCTTAGA-CAGGCACATATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACATGAAGCACACATATCATCGCCG
*
76891323 ATGTCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
76891350 CGGAATCTCA
Statistics
Matches: 193, Mismatches: 19, Indels: 14
0.85 0.08 0.06
Matches are distributed among these distances:
47 2 0.01
48 189 0.98
49 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACATGAAGCACACATATCATCGCCG
Found at i:76891247 original size:96 final size:97
Alignment explanation
Indices: 76891083--76891350 Score: 373
Period size: 96 Copynumber: 2.8 Consensus size: 97
76891073 TAAAGTACCA
* ** * *
76891083 ATGCCATGTCCTC-GACATGGTCTTACATGAATC-CACATATCATCGCCGATGCAATGTCCCAGA
1 ATGCCATGTCC-CAGACATGGTCTTACA-CAGGCACACATATCATCACCGATGCCATGTCCCAGA
*
76891146 CATGGTTTTACACT-GGCACACATATCATCGCCG
64 CATGGTCTTACACTAGGCACACATATCATCGCCG
* *
76891179 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCATCGATGCCATGTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGACA
* *
76891244 TGGTCTTACA-TAGGCACATATATCATCGCTG
66 TGGTCTTACACTAGGCACACATATCATCGCCG
* * *
76891275 ATGCCATGTCCCAGACATGGTCTTAGACAGGCACATATATCATCACCGATGTCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGACA
76891340 TGGTCTTACAC
66 TGGTCTTACAC
76891351 GGAATCTCAT
Statistics
Matches: 153, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
95 4 0.03
96 149 0.97
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (97 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGACA
TGGTCTTACACTAGGCACACATATCATCGCCG
Found at i:76891343 original size:144 final size:144
Alignment explanation
Indices: 76891083--76891350 Score: 396
Period size: 144 Copynumber: 1.9 Consensus size: 144
76891073 TAAAGTACCA
* *
76891083 ATGCCATGTCCTCGACATGGTCTTACATGAATCCACATATCATCGCCGATGCAATGTCCCAGACA
1 ATGCCATGTCCTCAACATGGTCTTACATGAAGCCACATATCATCGCCGATGCAATGTCCCAGACA
* * *
76891148 TGGTTTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCAC
66 TGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCAC
76891213 ACATATCATCATCG
131 ACATATCATCATCG
* * * *
76891227 ATGCCATGTCC-CAAACATGGTCTTACAT-AGGCACATATATCATCGCTGATGCCATGTCCCAGA
1 ATGCCATGTCCTC-AACATGGTCTTACATGAAGC-CACATATCATCGCCGATGCAATGTCCCAGA
* * *
76891290 CATGGTCTTAGACAGGCACATATATCATCACCGATGTCATGTCCCAGACATGGTCTTACAC
64 CATGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACAC
76891351 GGAATCTCAT
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
143 3 0.03
144 107 0.97
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (144 bp):
ATGCCATGTCCTCAACATGGTCTTACATGAAGCCACATATCATCGCCGATGCAATGTCCCAGACA
TGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCAC
ACATATCATCATCG
Found at i:76894012 original size:15 final size:15
Alignment explanation
Indices: 76893989--76894050 Score: 79
Period size: 15 Copynumber: 4.1 Consensus size: 15
76893979 CATGAAAACT
* *
76893989 AAGATAAAGAAGTCC
1 AAGACAAAGAAATCC
76894004 AAGACAAAGAAATCC
1 AAGACAAAGAAATCC
* *
76894019 ATGATAAAGAAATCC
1 AAGACAAAGAAATCC
*
76894034 AAGACACAGAAATCC
1 AAGACAAAGAAATCC
76894049 AA
1 AA
76894051 AATACAATAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 40 1.00
ACGTcount: A:0.56, C:0.18, G:0.15, T:0.11
Consensus pattern (15 bp):
AAGACAAAGAAATCC
Found at i:76894025 original size:30 final size:30
Alignment explanation
Indices: 76893991--76894049 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
76893981 TGAAAACTAA
*
76893991 GATAAAGAAGTCCAAGACAAAGAAATCCAT
1 GATAAAGAAATCCAAGACAAAGAAATCCAT
*
76894021 GATAAAGAAATCCAAGACACAGAAATCCA
1 GATAAAGAAATCCAAGACAAAGAAATCCA
76894050 AAATACAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.54, C:0.19, G:0.15, T:0.12
Consensus pattern (30 bp):
GATAAAGAAATCCAAGACAAAGAAATCCAT
Found at i:76894082 original size:25 final size:27
Alignment explanation
Indices: 76894045--76894096 Score: 65
Period size: 25 Copynumber: 2.0 Consensus size: 27
76894035 AGACACAGAA
76894045 ATCCAAAATACAAT-ATCATAATGAAAG
1 ATCCAAAATACAATGATCATAA-GAAAG
*
76894072 ATCC-AAA-ACAATGCTCATAAGAAAG
1 ATCCAAAATACAATGATCATAAGAAAG
76894097 TTATGAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 10 0.43
26 9 0.39
27 4 0.17
ACGTcount: A:0.54, C:0.17, G:0.10, T:0.19
Consensus pattern (27 bp):
ATCCAAAATACAATGATCATAAGAAAG
Found at i:76898025 original size:47 final size:44
Alignment explanation
Indices: 76897915--76898039 Score: 110
Period size: 47 Copynumber: 2.7 Consensus size: 44
76897905 CATTATGTCG
* *
76897915 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTTGGACATGCATCAG-C-CATTATGAGA
* *
76897961 GCCAGTGTAACACCATGTCTTGGACATGGCATCAG-CATTGAGTCGAGT
1 GCCAGTGTAAGA-CATGTCTTGGACAT-GCATCAGCCATT-A-T-GAGA
* *
76898009 GCTAGTGTAAGACATGT-TTGGGAAATGCATC
1 GCCAGTGTAAGACATGTCTT-GGACATGCATC
76898040 GACCTCGAGA
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
45 4 0.06
46 19 0.29
47 24 0.36
48 19 0.29
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTTGGACATGCATCAGCCATTATGAGA
Found at i:76908094 original size:47 final size:48
Alignment explanation
Indices: 76908024--76908124 Score: 136
Period size: 47 Copynumber: 2.1 Consensus size: 48
76908014 TAAAGTACCA
* *
76908024 ATGCCATGTCCTCGACATGGTCTTACA-T-GAATCCACATATCATCGCCG
1 ATGCCATGTCCTAGACATGGTCTTACACTAGCA--CACATATCATCGCCG
*
76908072 ATGCCATGT-CTAGACATGGTCTTACACTAGCACACATATCATCGCTG
1 ATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCATCGCCG
76908119 ATGCCA
1 ATGCCA
76908125 ACCTTATTTC
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
47 36 0.75
48 10 0.21
49 2 0.04
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCATCGCCG
Found at i:76909113 original size:24 final size:24
Alignment explanation
Indices: 76909075--76909141 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
76909065 GGAAGCTCAT
* *
76909075 AAGAGCCATAATCGGGAATTTCACA
1 AAGAACCAT-ATCGGGAAGTTCACA
* *
76909100 AAGAACCTTGTCGGGAAGTTCACA
1 AAGAACCATATCGGGAAGTTCACA
76909124 AAGAACCATATCGGGAAG
1 AAGAACCATATCGGGAAG
76909142 CTCCAGATAG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
24 29 0.81
25 7 0.19
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.18
Consensus pattern (24 bp):
AAGAACCATATCGGGAAGTTCACA
Found at i:76919994 original size:27 final size:27
Alignment explanation
Indices: 76919957--76920133 Score: 110
Period size: 27 Copynumber: 6.5 Consensus size: 27
76919947 TAAATTGTAC
* *
76919957 AGCACTAAGTGTGCAATTTGGCTATGT
1 AGCACTAAGTGTGCAATTTGACCATGT
*
76919984 AGCACTAAGTGTGCGATTTGACCATGT
1 AGCACTAAGTGTGCAATTTGACCATGT
* * **
76920011 TGCACTAAGTGTGCGAA-ATGAAAATG-
1 AGCACTAAGTGTGC-AATTTGACCATGT
*
76920037 ATGCACTAGGTGTGCGAA-TTGACCATG-
1 A-GCACTAAGTGTGC-AATTTGACCATGT
* * **
76920064 CGACACTAAGTGTGCGAGTTTGATTATGT
1 AG-CACTAAGTGTGC-AATTTGACCATGT
* * * ** *
76920093 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCAATTTGACCATGT
*
76920120 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
76920134 GGACTTAATA
Statistics
Matches: 120, Mismatches: 25, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 98 0.82
28 20 0.17
29 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCAATTTGACCATGT
Found at i:76920018 original size:54 final size:54
Alignment explanation
Indices: 76919958--76920113 Score: 165
Period size: 54 Copynumber: 2.9 Consensus size: 54
76919948 AAATTGTACA
** * *
76919958 GCACTAAGTGTGC-AATTTGGCTATGTAGCACTAAGTGTGCGATTTGACCATGTT
1 GCACTAAGTGTGCGAATTTGAATATGTAGCACTAAGTGTGCGAATTGACCATG-C
* * *
76920012 GCACTAAGTGTGCGAA-ATGAAAATG-ATGCACTAGGTGTGCGAATTGACCATGC
1 GCACTAAGTGTGCGAATTTGAATATGTA-GCACTAAGTGTGCGAATTGACCATGC
* * * *
76920065 GACACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGA
1 G-CACTAAGTGTGCGAATTTGAATATGTAGCACTAAGTGTGCGAATTGA
76920114 TTATATAGCA
Statistics
Matches: 83, Mismatches: 14, Indels: 9
0.78 0.13 0.08
Matches are distributed among these distances:
53 2 0.02
54 55 0.66
55 26 0.31
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAATTTGAATATGTAGCACTAAGTGTGCGAATTGACCATGC
Done.