Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 235 of 325
Found at i:76930868 original size:40 final size:40
Alignment explanation
Indices: 76930784--76930967 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
76930774 TTGAATGCTG
* * * *
76930784 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
76930823 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
76930864 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
76930904 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
76930944 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
76930968 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:76930921 original size:80 final size:81
Alignment explanation
Indices: 76930784--76930964 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
76930774 TTGAATGCTG
* * *
76930784 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
76930848 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
76930864 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
76930925 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
76930944 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
76930965 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:76930988 original size:39 final size:38
Alignment explanation
Indices: 76930865--76931014 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
76930855 GTTATTAATT
* ** * *
76930865 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
76930905 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
76930944 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
76930984 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
76931015 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:76938710 original size:40 final size:40
Alignment explanation
Indices: 76938626--76938809 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
76938616 TTGAATGCTG
* * * *
76938626 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
76938665 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
76938706 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
76938746 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
76938786 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
76938810 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:76938763 original size:80 final size:81
Alignment explanation
Indices: 76938626--76938806 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
76938616 TTGAATGCTG
* * *
76938626 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
76938690 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
76938706 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
76938767 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
76938786 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
76938807 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:76938830 original size:39 final size:38
Alignment explanation
Indices: 76938707--76938856 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
76938697 GTTATTAATT
* ** * *
76938707 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
76938747 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
76938786 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
76938826 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
76938857 GAGCTAATCC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:76945848 original size:23 final size:21
Alignment explanation
Indices: 76945821--76945866 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
76945811 CTTTAGCCAT
76945821 TTTTTATTGTTATTGTAATTTAA
1 TTTTTATTGTTATTGT--TTTAA
* *
76945844 TTTTTTTTGTTTTTGTTTTAA
1 TTTTTATTGTTATTGTTTTAA
76945865 TT
1 TT
76945867 ACTTCTGGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 7 0.33
23 14 0.67
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (21 bp):
TTTTTATTGTTATTGTTTTAA
Found at i:76946247 original size:70 final size:70
Alignment explanation
Indices: 76946134--76946273 Score: 271
Period size: 70 Copynumber: 2.0 Consensus size: 70
76946124 TGCTAACTTT
76946134 ATCTAACAGGAACTGAATTGACTATAGTTAGACCTACTGTTGCTGCAAATAACTTTGAACTGAAA
1 ATCTAACAGGAACTGAATTGACTATAGTTAGACCTACTGTTGCTGCAAATAACTTTGAACTGAAA
76946199 CCTAA
66 CCTAA
*
76946204 ATCTAACAGGAACTGAATTGACTATAGTTAGACCTGCTGTTGCTGCAAATAACTTTGAACTGAAA
1 ATCTAACAGGAACTGAATTGACTATAGTTAGACCTACTGTTGCTGCAAATAACTTTGAACTGAAA
76946269 CCTAA
66 CCTAA
76946274 CACTATTCAA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (70 bp):
ATCTAACAGGAACTGAATTGACTATAGTTAGACCTACTGTTGCTGCAAATAACTTTGAACTGAAA
CCTAA
Found at i:76955690 original size:7 final size:6
Alignment explanation
Indices: 76955674--76955719 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
76955664 ACTTTAGTTG
* * * *
76955674 TTTTTC TTTTTC TTTTTC TTTTTC CTTTTA TTTTTA TTTTTA TTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTT
76955720 CATTTTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTC
Found at i:76955697 original size:18 final size:18
Alignment explanation
Indices: 76955674--76955726 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
76955664 ACTTTAGTTG
* *
76955674 TTTTTCTTTTTCTTTTTC
1 TTTTTCTTTTTATTTTTA
*
76955692 TTTTTCCTTTTATTTTTA
1 TTTTTCTTTTTATTTTTA
* *
76955710 TTTTTATTTTCATTTTT
1 TTTTTCTTTTTATTTTT
76955727 TTATGTTCTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTCTTTTTATTTTTA
Found at i:76964728 original size:48 final size:49
Alignment explanation
Indices: 76964640--76964962 Score: 365
Period size: 48 Copynumber: 6.7 Consensus size: 49
76964630 TAAAGTACCA
* * **
76964640 ATGCCATGTCCCCGACATGGTCTTACATGAATC-CA-CATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACA-CAGGCACATCATATCATCGTCG
*
76964688 ATGCTATGTCCCAGACATGGTCTTACACAGGCACAT-ATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATCATATCATCGTCG
* * * *
76964736 ATGCCATGTCACAGACATGGTGTTACACAGGCACA-CATATCATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATCATATCATCGTCG
* *
76964784 ATGCCATGTCCCAGACATGGCCTTACACAGGCAC-TCATATCATCGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATCATATCATCGTCG
* * * * * *
76964832 ATTCCATATCCTAAACATGGTCTTACATAGGCAC-TCATATCATC-ACTG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATCATATCATCGTC-G
* * * *
76964880 ATGTCATGTCCCAGACATGGTCTTACACAAGCAC-TCATATCATCATGG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATCATATCATCGTCG
* *
76964928 ATGCCATGTCCTAGACATGGTCTTACACGGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACA
76964963 CATTAGTATG
Statistics
Matches: 231, Mismatches: 37, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
47 2 0.01
48 229 0.99
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATCATATCATCGTCG
Found at i:76965074 original size:25 final size:25
Alignment explanation
Indices: 76965040--76965090 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
76965030 TAACGCTATC
* *
76965040 ATCACATTTTGATTGAATCATCACA
1 ATCACATTTTAATTGAATAATCACA
* *
76965065 ATCACGTTTTAATTGACTAATCACA
1 ATCACATTTTAATTGAATAATCACA
76965090 A
1 A
76965091 GTCAATTCCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (25 bp):
ATCACATTTTAATTGAATAATCACA
Found at i:76980433 original size:46 final size:45
Alignment explanation
Indices: 76980361--76980534 Score: 149
Period size: 46 Copynumber: 3.8 Consensus size: 45
76980351 GTAACCCGCC
* * *
76980361 CCTAAGTGAACTTGGACTCAATTCAACGAGTTCGGGGGTTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGAGTTCGCAT
*
76980406 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G---AGTTCGCAT
* * * * * *
76980456 -CTCA-CGAACTCGGACTCAACTCAATGAGTT-TGAACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGA-GTTCGCAT
*
76980499 CCGTAAGTGAACTTGGACTCAACTCAACGAGTTCGG
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
76980535 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 16, Indels: 22
0.73 0.12 0.16
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 3 0.03
44 1 0.01
45 4 0.04
46 55 0.54
47 25 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGAGTTCGCAT
Found at i:76988670 original size:39 final size:40
Alignment explanation
Indices: 76988586--76988670 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
76988576 ACTTAATTCA
* * * *
76988586 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCAGATACAATC
*
76988626 CCAGCATGAAGCCAGCGGGTCTCT-AACCCAGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCAGATACAATC
*
76988665 TCAGCA
1 CCAGCA
76988671 CAATTCATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 19 0.49
40 20 0.51
ACGTcount: A:0.31, C:0.32, G:0.20, T:0.18
Consensus pattern (40 bp):
CCAGCATGAAGCCAGCGGGACTCTAAACCCAGATACAATC
Found at i:76988857 original size:47 final size:46
Alignment explanation
Indices: 76988751--76988866 Score: 128
Period size: 47 Copynumber: 2.5 Consensus size: 46
76988741 ACTTTTCAAA
*
76988751 ATTGGTCATTCGGCCTTATCACA-TATTCACGTACACATATATCAC
1 ATTGGTCATTCGGCCTTATCACATTATGCACGTACACATATATCAC
*** * * * *
76988796 ATTAACCATCCGGCCTTATAACATGTATGCACTTCCACAT-TCATCAC
1 ATTGGTCATTCGGCCTTATCACAT-TATGCACGTACACATAT-ATCAC
76988843 ATTGGTCATTCGGCCTTATCACAT
1 ATTGGTCATTCGGCCTTATCACAT
76988867 ATCATGGCCA
Statistics
Matches: 55, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
45 18 0.33
46 1 0.02
47 36 0.65
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (46 bp):
ATTGGTCATTCGGCCTTATCACATTATGCACGTACACATATATCAC
Found at i:76990321 original size:25 final size:26
Alignment explanation
Indices: 76990278--76990331 Score: 101
Period size: 25 Copynumber: 2.1 Consensus size: 26
76990268 AACGTATATA
76990278 CATAATTCATATTCAACATTACAAAC
1 CATAATTCATATTCAACATTACAAAC
76990304 CATAATTCA-ATTCAACATTACAAAC
1 CATAATTCATATTCAACATTACAAAC
76990329 CAT
1 CAT
76990332 TATCACCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 19 0.68
26 9 0.32
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (26 bp):
CATAATTCATATTCAACATTACAAAC
Found at i:77003770 original size:47 final size:47
Alignment explanation
Indices: 77003710--77003954 Score: 337
Period size: 47 Copynumber: 5.2 Consensus size: 47
77003700 TTAGGATTTT
* ** * * * *
77003710 ATGTGATGGATGTGAATGTGTATACATGAGCTAAGGCCGAATGGAAA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
* *
77003757 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
* *
77003804 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
*
77003851 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
* * * * *
77003898 ATGTGATAAATGTGAACATGCATACATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
77003945 ATGTGATGAA
1 ATGTGATGAA
77003955 CGTGGGTGTG
Statistics
Matches: 181, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 181 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
Found at i:77003808 original size:24 final size:24
Alignment explanation
Indices: 77003781--77003855 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
77003771 AACATGCATT
77003781 TGTGTGCTAAGGCCGAATGGCAAA
1 TGTGTGCTAAGGCCGAATGGCAAA
* * **
77003805 TGTGATG--AATG-TGAACAT-GCATT
1 TGTG-TGCTAAGGCCG-A-ATGGCAAA
77003828 TGTGTGCTAAGGCCGAATGGCAAA
1 TGTGTGCTAAGGCCGAATGGCAAA
77003852 TGTG
1 TGTG
77003856 ATGAATGTGA
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 3 0.08
23 13 0.36
24 17 0.47
25 3 0.08
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (24 bp):
TGTGTGCTAAGGCCGAATGGCAAA
Found at i:77003831 original size:23 final size:23
Alignment explanation
Indices: 77003758--77003831 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
77003748 GAATGGAAAA
77003758 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
* * **
77003781 TGTG-TGCTAAGGCCG-A-ATGGCAAA
1 TGTGATG--AATG-TGAACAT-GCATT
77003805 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
77003828 TGTG
1 TGTG
77003832 TGCTAAGGCC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 3 0.08
23 17 0.47
24 13 0.36
25 3 0.08
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.31
Consensus pattern (23 bp):
TGTGATGAATGTGAACATGCATT
Found at i:77004055 original size:46 final size:45
Alignment explanation
Indices: 77003970--77004060 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 45
77003960 GTGTGTATAT
* *
77003970 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGAGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAAT-AGTATGAGATGG
* *
77004016 ATATGTGGTAAAGCCAAATGGCTAATGTGAGACAT-GTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGA-A-ATAGTATGAGATG
77004061 TGTATATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
46 36 0.92
47 1 0.03
48 2 0.05
ACGTcount: A:0.35, C:0.08, G:0.32, T:0.25
Consensus pattern (45 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATAGTATGAGATGG
Found at i:77005592 original size:40 final size:40
Alignment explanation
Indices: 77005538--77005850 Score: 455
Period size: 40 Copynumber: 7.8 Consensus size: 40
77005528 TTGAGATTTA
* * *
77005538 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCCGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
77005578 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
77005618 TATATCCGGGCTAAGTCCCGAAGAGCATCCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
77005658 TATATCCGGGCTAAGTCCCGAAGAGCATCCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
77005698 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * * * *
77005738 TATGTCCGGGCAAAATCCCGAAGGGCATTCGTACCGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * * * *
77005778 TATATCCGGGCTAAATCCCGAAGGGTATTCATGCCGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
77005818 TATATCCGGACTAAGTCCCGAAGGGCATTCGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTG
77005851 TCGGTGATGT
Statistics
Matches: 252, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 252 1.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:77009751 original size:47 final size:47
Alignment explanation
Indices: 77009691--77009935 Score: 337
Period size: 47 Copynumber: 5.2 Consensus size: 47
77009681 TTAGGATTTT
* ** * * * *
77009691 ATGTGATGGATGTGAATGTGTATACATGAGCTAAGGCCGAATGGAAA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
* *
77009738 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
* *
77009785 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
*
77009832 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
* * * * *
77009879 ATGTGATAAATGTGAACATGCATACATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
77009926 ATGTGATGAA
1 ATGTGATGAA
77009936 CGTGGGTGTG
Statistics
Matches: 181, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 181 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
Found at i:77009789 original size:24 final size:24
Alignment explanation
Indices: 77009762--77009836 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
77009752 AACATGCATT
77009762 TGTGTGCTAAGGCCGAATGGCAAA
1 TGTGTGCTAAGGCCGAATGGCAAA
* * **
77009786 TGTGATG--AATG-TGAACAT-GCATT
1 TGTG-TGCTAAGGCCG-A-ATGGCAAA
77009809 TGTGTGCTAAGGCCGAATGGCAAA
1 TGTGTGCTAAGGCCGAATGGCAAA
77009833 TGTG
1 TGTG
77009837 ATGAATGTGA
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 3 0.08
23 13 0.36
24 17 0.47
25 3 0.08
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (24 bp):
TGTGTGCTAAGGCCGAATGGCAAA
Found at i:77009812 original size:23 final size:23
Alignment explanation
Indices: 77009739--77009812 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
77009729 GAATGGAAAA
77009739 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
* * **
77009762 TGTG-TGCTAAGGCCG-A-ATGGCAAA
1 TGTGATG--AATG-TGAACAT-GCATT
77009786 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
77009809 TGTG
1 TGTG
77009813 TGCTAAGGCC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 3 0.08
23 17 0.47
24 13 0.36
25 3 0.08
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.31
Consensus pattern (23 bp):
TGTGATGAATGTGAACATGCATT
Found at i:77010036 original size:46 final size:45
Alignment explanation
Indices: 77009951--77010041 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 45
77009941 GTGTGTATAT
* *
77009951 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGAGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAAT-AGTATGAGATGG
* *
77009997 ATATGTGGTAAAGCCAAATGGCTAATGTGAGACAT-GTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGA-A-ATAGTATGAGATG
77010042 TGTATATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
46 36 0.92
47 1 0.03
48 2 0.05
ACGTcount: A:0.35, C:0.08, G:0.32, T:0.25
Consensus pattern (45 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATAGTATGAGATGG
Found at i:77011573 original size:40 final size:40
Alignment explanation
Indices: 77011519--77011831 Score: 455
Period size: 40 Copynumber: 7.8 Consensus size: 40
77011509 TTGAGATTTA
* * *
77011519 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCCGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
77011559 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
77011599 TATATCCGGGCTAAGTCCCGAAGAGCATCCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
77011639 TATATCCGGGCTAAGTCCCGAAGAGCATCCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
77011679 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * * * *
77011719 TATGTCCGGGCAAAATCCCGAAGGGCATTCGTACCGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * * * *
77011759 TATATCCGGGCTAAATCCCGAAGGGTATTCATGCCGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
77011799 TATATCCGGACTAAGTCCCGAAGGGCATTCGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTG
77011832 TCGGTGATGT
Statistics
Matches: 252, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 252 1.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:77015732 original size:47 final size:47
Alignment explanation
Indices: 77015672--77015916 Score: 337
Period size: 47 Copynumber: 5.2 Consensus size: 47
77015662 TTAGGATTTT
* ** * * * *
77015672 ATGTGATGGATGTGAATGTGTATACATGAGCTAAGGCCGAATGGAAA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
* *
77015719 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
* *
77015766 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
*
77015813 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
* * * * *
77015860 ATGTGATAAATGTGAACATGCATACATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
77015907 ATGTGATGAA
1 ATGTGATGAA
77015917 CGTGGGTGTG
Statistics
Matches: 181, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 181 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGCTAAGGCCGAATGGCAA
Found at i:77015770 original size:24 final size:24
Alignment explanation
Indices: 77015743--77015817 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
77015733 AACATGCATT
77015743 TGTGTGCTAAGGCCGAATGGCAAA
1 TGTGTGCTAAGGCCGAATGGCAAA
* * **
77015767 TGTGATG--AATG-TGAACAT-GCATT
1 TGTG-TGCTAAGGCCG-A-ATGGCAAA
77015790 TGTGTGCTAAGGCCGAATGGCAAA
1 TGTGTGCTAAGGCCGAATGGCAAA
77015814 TGTG
1 TGTG
77015818 ATGAATGTGA
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 3 0.08
23 13 0.36
24 17 0.47
25 3 0.08
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (24 bp):
TGTGTGCTAAGGCCGAATGGCAAA
Found at i:77015793 original size:23 final size:23
Alignment explanation
Indices: 77015720--77015793 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
77015710 GAATGGAAAA
77015720 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
* * **
77015743 TGTG-TGCTAAGGCCG-A-ATGGCAAA
1 TGTGATG--AATG-TGAACAT-GCATT
77015767 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
77015790 TGTG
1 TGTG
77015794 TGCTAAGGCC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 3 0.08
23 17 0.47
24 13 0.36
25 3 0.08
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.31
Consensus pattern (23 bp):
TGTGATGAATGTGAACATGCATT
Found at i:77016017 original size:46 final size:45
Alignment explanation
Indices: 77015932--77016022 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 45
77015922 GTGTGTATAT
* *
77015932 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGAGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAAT-AGTATGAGATGG
* *
77015978 ATATGTGGTAAAGCCAAATGGCTAATGTGAGACAT-GTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGA-A-ATAGTATGAGATG
77016023 TGTATATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
46 36 0.92
47 1 0.03
48 2 0.05
ACGTcount: A:0.35, C:0.08, G:0.32, T:0.25
Consensus pattern (45 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATAGTATGAGATGG
Found at i:77021230 original size:21 final size:21
Alignment explanation
Indices: 77021205--77021252 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
77021195 TGTGGGCCTA
77021205 TGGGCCTGCTTAAATGGGCTT
1 TGGGCCTGCTTAAATGGGCTT
77021226 TGGGCCTGCTTAAATGGGCTT
1 TGGGCCTGCTTAAATGGGCTT
77021247 TGGGCC
1 TGGGCC
77021253 CAATCGCTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.12, C:0.21, G:0.35, T:0.31
Consensus pattern (21 bp):
TGGGCCTGCTTAAATGGGCTT
Found at i:77025670 original size:85 final size:85
Alignment explanation
Indices: 77025527--77025705 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
77025517 GGCCGGCCAT
77025527 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
77025592 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
77025612 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
77025677 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
77025697 GGGCATGGG
1 GAGCATGGG
77025706 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:77027939 original size:47 final size:47
Alignment explanation
Indices: 77027888--77028096 Score: 301
Period size: 47 Copynumber: 4.4 Consensus size: 47
77027878 TTAGGATTTT
*
77027888 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
77027935 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCCA
77027986 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * * *
77028033 CTGTGATGGATGTGAACATGCGTATGTATGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
77028080 ATGTGATGAATGTGAAC
1 ATGTGATGAATGTGAAC
77028097 CCGTATATAT
Statistics
Matches: 143, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
47 99 0.69
48 1 0.01
50 1 0.01
51 42 0.29
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:77027999 original size:98 final size:94
Alignment explanation
Indices: 77027888--77028096 Score: 303
Period size: 98 Copynumber: 2.2 Consensus size: 94
77027878 TTAGGATTTT
*
77027888 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
* *
77027953 TGTATATATATGTGTGATAAGG-CTGAATGGCCA
65 ---ATACATATGTATGATAAGGTC-GAATGGCCA
* *
77027986 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCACTGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
77028051 TGCGTATGTATGATAAGGTCGAATGGCCA
66 TACATATGTATGATAAGGTCGAATGGCCA
77028080 ATGTGATGAATGTGAAC
1 ATGTGATGAATGTGAAC
77028097 CCGTATATAT
Statistics
Matches: 103, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
94 41 0.40
95 1 0.01
97 1 0.01
98 60 0.58
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TACATATGTATGATAAGGTCGAATGGCCA
Found at i:77028387 original size:37 final size:37
Alignment explanation
Indices: 77028242--77028386 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
77028232 GGAAATATAT
77028242 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
77028279 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
77028316 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
77028353 TCCGGGTAAGACCCAATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
77028387 TCGTCTGAGC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:77031718 original size:79 final size:82
Alignment explanation
Indices: 77031601--77031785 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
77031591 GCTACTCGTT
* * *
77031601 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
77031664 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
77031681 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
77031744 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
77031761 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77031786 CATCATTCGA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:77031785 original size:40 final size:40
Alignment explanation
Indices: 77031583--77031785 Score: 227
Period size: 40 Copynumber: 5.1 Consensus size: 40
77031573 GGAATTTAAT
** * *
77031583 CGGATATAGCT-ACTCGTTCAAATGCCTTCGGGTCATAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
77031623 CGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
77031663 CGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
77031702 CGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCC
* * *
77031742 CGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCC
1 CGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
77031782 CGGA
1 CGGA
77031786 CATCATTCGA
Statistics
Matches: 139, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:77033013 original size:56 final size:56
Alignment explanation
Indices: 77032945--77033120 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
77032935 TATTAGTTTA
77032945 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
77033001 CTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
77033057 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
77033113 TTGCCCAT
1 TTGCCCAT
77033121 CATCCCTTGT
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:77038480 original size:19 final size:19
Alignment explanation
Indices: 77038456--77038494 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
77038446 AAACTCAAGT
77038456 AAGAATAACTTACCTTATA
1 AAGAATAACTTACCTTATA
77038475 AAGAATAACTTACCTTATA
1 AAGAATAACTTACCTTATA
77038494 A
1 A
77038495 CTACAAAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.31
Consensus pattern (19 bp):
AAGAATAACTTACCTTATA
Found at i:77038977 original size:22 final size:22
Alignment explanation
Indices: 77038950--77038992 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
77038940 TGGTGGTATA
77038950 AGGTGGTTGAATGGTAGTGATT
1 AGGTGGTTGAATGGTAGTGATT
* *
77038972 AGGTGGTTGTATGGTGGTGAT
1 AGGTGGTTGAATGGTAGTGAT
77038993 ATGGTTGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.37
Consensus pattern (22 bp):
AGGTGGTTGAATGGTAGTGATT
Found at i:77042637 original size:6 final size:6
Alignment explanation
Indices: 77042619--77042706 Score: 81
Period size: 6 Copynumber: 14.3 Consensus size: 6
77042609 AAGAAACATT
*
77042619 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
77042668 ATCAGA ATTAGT ATCAGA TAACAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA -ATCAGA ATCAGA ATCAGA AT
77042707 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
5 2 0.03
6 54 0.82
7 9 0.14
8 1 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:77042666 original size:31 final size:31
Alignment explanation
Indices: 77042628--77042706 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
77042618 TATCAGAACT
* *
77042628 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGATAAC
* *
77042659 AGAATCAGAATCAGAATTAGTATCAGATAAC
1 AGAATCAGAATCAGAATCAGAATCAGATAAC
*
77042690 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
77042707 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGATAAC
Found at i:77042872 original size:27 final size:26
Alignment explanation
Indices: 77042824--77042883 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
77042814 GCGAGGCTAC
*
77042824 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
77042851 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
77042877 CAGATAT
1 CAGATAT
77042884 ATATAGGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:77042980 original size:67 final size:70
Alignment explanation
Indices: 77042851--77042992 Score: 200
Period size: 67 Copynumber: 2.1 Consensus size: 70
77042841 TCACCAGATA
* * * *
77042851 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATAGGTGGCGAAGCCACTAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATATA-GTGGCGAAGCCACCAGATTGCAGCGA
77042916 GGCTGC
65 GGCTGC
* *
77042922 CAGATATTGTGACGAAGTCACCAGAACA-A-ATATAT-GTGGCGAGGCCACCAGATTGCAGCGAG
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATATAGTGGCGAAGCCACCAGATTGCAGCGAG
77042984 GCTGC
66 GCTGC
77042989 CAGA
1 CAGA
77042993 ACACTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
67 34 0.52
69 6 0.09
70 1 0.02
71 24 0.37
ACGTcount: A:0.31, C:0.22, G:0.29, T:0.18
Consensus pattern (70 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATATAGTGGCGAAGCCACCAGATTGCAGCGAG
GCTGC
Found at i:77043241 original size:27 final size:26
Alignment explanation
Indices: 77043210--77043566 Score: 354
Period size: 27 Copynumber: 13.2 Consensus size: 26
77043200 AACACCCTAG
*
77043210 GGGTAAAATGCTAATTTTATAAATCGA
1 GGGTAAAATG-TAATTTTGTAAATCGA
* *
77043237 AGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAAT-GTAATTTTGTAAATCGA
*
77043264 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAA-TGTAATTTTGTAAATCGA
* *
77043291 GAGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAAT-GTAATTTTGTAAATCGA
* * * *
77043318 GGGTAAAACAGTAATTCTATCAATCGA
1 GGGTAAAA-TGTAATTTTGTAAATCGA
* * * *
77043345 GGGTAAAACGGTAATTCTATTAATCGA
1 GGGTAAAA-TGTAATTTTGTAAATCGA
* *
77043372 GGGTAAAACAGTAATTTTGTAAATTGA
1 GGGTAAAA-TGTAATTTTGTAAATCGA
* *
77043399 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAA-TGTAATTTTGTAAATCGA
* * *
77043426 GGGTAAAATAATAATTCTATAAATCGA
1 GGGTAAAAT-GTAATTTTGTAAATCGA
77043453 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAAT-GTAATTTTGTAAATCGA
* *
77043480 GGGTAAAACGATAATTTTATAAATCGA
1 GGGTAAAATG-TAATTTTGTAAATCGA
*
77043507 GGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAAT-GTAATTTTGTAAATCGA
* *
77043534 GGGTAAAACAGTAATTTTTGTAATTCGA
1 GGGTAAAA-TGTAA-TTTTGTAAATCGA
77043562 GGGTA
1 GGGTA
77043567 CTTTGATAAT
Statistics
Matches: 281, Mismatches: 40, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.00
27 262 0.93
28 18 0.06
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (26 bp):
GGGTAAAATGTAATTTTGTAAATCGA
Found at i:77043297 original size:54 final size:54
Alignment explanation
Indices: 77043221--77043566 Score: 460
Period size: 54 Copynumber: 6.4 Consensus size: 54
77043211 GGTAAAATGC
*
77043221 TAATTTTATAAATCGAAGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAG
1 TAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAG
* * * * *
77043275 TAATTTTGTAAATCGAGAGTAAAATAGTAATTTTGTAAATTGAGGGTAAAACAG
1 TAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAG
* * * * *
77043329 TAATTCTATCAATCGAGGGTAAAACGGTAATTCTATTAATCGAGGGTAAAACAG
1 TAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAG
* * * * *
77043383 TAATTTTGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAA
1 TAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAG
* *
77043437 TAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAAC-G
1 TAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAG
* * *
77043490 ATAATTTTATAAATCGAGGGTAAAATAGTAATTTTGTAAATTGAGGGTAAAACAG
1 -TAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAG
* *
77043545 TAATTTTTGTAATTCGAGGGTA
1 TAA-TTTTATAAATCGAGGGTA
77043567 CTTTGATAAT
Statistics
Matches: 253, Mismatches: 36, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
54 236 0.93
55 17 0.07
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (54 bp):
TAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAG
Found at i:77043323 original size:81 final size:81
Alignment explanation
Indices: 77043210--77043566 Score: 448
Period size: 81 Copynumber: 4.4 Consensus size: 81
77043200 AACACCCTAG
* * * * *
77043210 GGGTAAAAT-GCTAATTTTATAAATCGAAGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACA
1 GGGTAAAATAG-TAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACA
* *
77043274 GTAATTTTGTAAATCGA
65 GTAATTCTATAAATCGA
* * * *
77043291 GAGTAAAATAGTAATTTTGTAAATTGAGGGTAAAACAGTAATTCTATCAATCGAGGGTAAAACGG
1 GGGTAAAATAGTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG
*
77043356 TAATTCTATTAATCGA
66 TAATTCTATAAATCGA
* * * *
77043372 GGGTAAAACAGTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAA
1 GGGTAAAATAGTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG
77043437 TAATTCTATAAATCGA
66 TAATTCTATAAATCGA
* * * * *
77043453 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTATAAATCGAGGGTAAAATAG
1 GGGTAAAATAGTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG
* * *
77043518 TAATTTTGTAAATTGA
66 TAATTCTATAAATCGA
*
77043534 GGGTAAAACAGTAATTTTTGT-AATTCGAGGGTA
1 GGGTAAAATAGTAA-TTTTGTAAATT-GAGGGTA
77043567 CTTTGATAAT
Statistics
Matches: 239, Mismatches: 34, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
81 225 0.94
82 14 0.06
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (81 bp):
GGGTAAAATAGTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG
TAATTCTATAAATCGA
Found at i:77043621 original size:27 final size:27
Alignment explanation
Indices: 77043573--77043712 Score: 97
Period size: 27 Copynumber: 5.2 Consensus size: 27
77043563 GGTACTTTGA
** * *
77043573 TAATTTTACATGTCGAGTGTATTTCAG
1 TAATTTTACAAATCAAGGGTATTTCAG
*
77043600 TAATTTTGCAAA-CTAAGGGTATTTCAG
1 TAATTTTACAAATC-AAGGGTATTTCAG
* **
77043627 TAATTTTACAAATCAAGGATATTTGTG
1 TAATTTTACAAATCAAGGGTATTTCAG
* ** * *
77043654 TAATTTTATAAATCGGGGGCACTTT-GG
1 TAATTTTACAAATCAAGGGTA-TTTCAG
* * *
77043681 TAATTTTACAACT-AGGGGTATTTCAA
1 TAATTTTACAAATCAAGGGTATTTCAG
77043707 TAATTT
1 TAATTT
77043713 GGTAAACTAA
Statistics
Matches: 88, Mismatches: 21, Indels: 9
0.75 0.18 0.08
Matches are distributed among these distances:
25 3 0.03
26 12 0.14
27 69 0.78
28 4 0.05
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (27 bp):
TAATTTTACAAATCAAGGGTATTTCAG
Found at i:77045890 original size:34 final size:34
Alignment explanation
Indices: 77045847--77045911 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
77045837 CTGTACTGAT
*
77045847 ACTGATACTGTTACT-AAATTGGGCTAAGGCCTAC
1 ACTGATACTGGTACTGAAA-TGGGCTAAGGCCTAC
*
77045881 ACTGATACTGGTACTGTAATGGGCTAAGGCC
1 ACTGATACTGGTACTGAAATGGGCTAAGGCC
77045912 CAACTAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 26 0.93
35 2 0.07
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (34 bp):
ACTGATACTGGTACTGAAATGGGCTAAGGCCTAC
Found at i:77050993 original size:25 final size:25
Alignment explanation
Indices: 77050955--77051004 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
77050945 CCCTATAACA
* * *
77050955 TAAAAATGATCATTTTGCCCCTAGG
1 TAAAAATGACCATTATACCCCTAGG
*
77050980 TAAAAGTGACCATTATACCCCTAGG
1 TAAAAATGACCATTATACCCCTAGG
77051005 GTTTATATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (25 bp):
TAAAAATGACCATTATACCCCTAGG
Found at i:77051148 original size:23 final size:23
Alignment explanation
Indices: 77051118--77051237 Score: 195
Period size: 23 Copynumber: 5.1 Consensus size: 23
77051108 AGGAAGTGCA
77051118 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
77051141 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
77051165 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77051188 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
77051211 AAAAAGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
77051235 AAA
1 AAA
77051238 AGAGGCTAGG
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
23 48 0.53
24 43 0.47
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:77051173 original size:24 final size:23
Alignment explanation
Indices: 77051117--77051244 Score: 184
Period size: 24 Copynumber: 5.4 Consensus size: 23
77051107 GAGGAAGTGC
77051117 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
77051140 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
77051163 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
77051187 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
77051211 AAAAAGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
77051235 AAAAGAGGCT
1 AAAAG-GGCT
77051245 AGGCCTCCAG
Statistics
Matches: 95, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
23 43 0.45
24 48 0.51
25 4 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:77051185 original size:47 final size:47
Alignment explanation
Indices: 77051116--77051237 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
77051106 GGAGGAAGTG
77051116 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
77051163 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * *
77051210 TAAAAAGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
77051238 AGAGGCTAGG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.29
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:77051486 original size:31 final size:31
Alignment explanation
Indices: 77051451--77051514 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
77051441 CGTTTACAGT
77051451 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
77051482 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
77051513 AA
1 AA
77051515 TCTGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:77061883 original size:79 final size:80
Alignment explanation
Indices: 77061769--77061953 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
77061759 GCTACTCGTT
* ** *
77061769 CAAATGCCTTCGGGACATAGCCC-GTTTATACTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
77061832 GGATTTAGTAAC-TCGCA
63 GGATATAGTAACTTAGCA
* **
77061849 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 -CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
77061913 ATATGGTCACTTAGCA
65 ATATAGTAACTTAGCA
77061929 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
77061954 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 56 0.64
80 26 0.30
81 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:77061953 original size:40 final size:40
Alignment explanation
Indices: 77061750--77061953 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
77061740 CGGAATTTAA
** *
77061750 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
** * *
77061790 CCGTTTATACTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77061830 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
77061869 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
77061909 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
77061949 CCGGA
1 CCGGA
77061954 CATCATTCGA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 90 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77069977 original size:79 final size:80
Alignment explanation
Indices: 77069809--77069993 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
77069799 GCTACTCGTT
* * *
77069809 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGAACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGAGACTTAGCCCGGAAT-TAGTAACTCGAACAAATGCCTTCGGGACTTAACCCG
* *
77069873 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* * **
77069890 CAATGCCTTCGAG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGAGACTTAGCCCGGAATTAGTAACTCGAACAAATGCCTTCGGGA-CTTAACCCGG
* *
77069953 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
*
77069969 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGAGACTTAGCCCGGA
77069994 CATCATTCGA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.66
80 24 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGAGACTTAGCCCGGAATTAGTAACTCGAACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:77069993 original size:40 final size:40
Alignment explanation
Indices: 77069790--77069993 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
77069780 CGGAATTTAA
** *
77069790 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
77069830 CCGGTTATAGTAACTCGAACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
77069870 CCGGATTTAGTAACTCGCACCAATGCCTTCGAG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
77069909 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
77069949 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
77069989 CCGGA
1 CCGGA
77069994 CATCATTCGA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 33 0.24
40 92 0.67
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77073260 original size:11 final size:10
Alignment explanation
Indices: 77073228--77073264 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
77073218 CATGAGATTT
77073228 TGATAT-ACA
1 TGATATGACA
77073237 TGATATGACA
1 TGATATGACA
77073247 TGATATGCACA
1 TGATATG-ACA
77073258 TGATATG
1 TGATATG
77073265 TTATGAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (10 bp):
TGATATGACA
Found at i:77073260 original size:21 final size:21
Alignment explanation
Indices: 77073234--77073284 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
77073224 ATTTTGATAT
*
77073234 ACATGATATGACATGATATGC
1 ACATGATATGACATGAAATGC
**
77073255 ACATGATATGTTATGAAATGC
1 ACATGATATGACATGAAATGC
*
77073276 GCATGATAT
1 ACATGATAT
77073285 ACTCATTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (21 bp):
ACATGATATGACATGAAATGC
Found at i:77073601 original size:24 final size:24
Alignment explanation
Indices: 77073544--77073615 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
77073534 AGGAAGTGCA
77073544 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
77073568 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
77073592 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
77073616 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:77078574 original size:24 final size:24
Alignment explanation
Indices: 77078524--77078577 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
77078514 AATCGAATTT
*
77078524 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
77078548 GCACACATAGTGCCATAG-CACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
77078572 GCACAC
1 GCACAC
77078578 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 6 0.22
26 2 0.07
ACGTcount: A:0.30, C:0.39, G:0.17, T:0.15
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:77085623 original size:24 final size:24
Alignment explanation
Indices: 77085573--77085626 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
77085563 AATCGAATTT
*
77085573 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
77085597 GCACACATAGTGCCATAG-CACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
77085621 GCACAC
1 GCACAC
77085627 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 6 0.22
26 2 0.07
ACGTcount: A:0.30, C:0.39, G:0.17, T:0.15
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:77090066 original size:10 final size:10
Alignment explanation
Indices: 77090045--77090080 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
77090035 CATGAGATTT
77090045 TGATAT-ACA
1 TGATATGACA
77090054 TGATATGACA
1 TGATATGACA
77090064 TGATATGCACA
1 TGATATG-ACA
77090075 TGATAT
1 TGATAT
77090081 ATTATGAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.24
10 10 0.40
11 9 0.36
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (10 bp):
TGATATGACA
Found at i:77090087 original size:21 final size:21
Alignment explanation
Indices: 77090063--77090102 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
77090053 ATGATATGAC
*
77090063 ATGATATGCACATGATATATT
1 ATGAGATGCACATGATATATT
*
77090084 ATGAGATGCGCATGATATA
1 ATGAGATGCACATGATATA
77090103 CTCATTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (21 bp):
ATGAGATGCACATGATATATT
Found at i:77090195 original size:24 final size:25
Alignment explanation
Indices: 77090147--77090195 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
77090137 GGAGGAAGTA
* *
77090147 CAAAAAGGGCTTTGCCCTAGTTTAT
1 CAAAAAGGGCTTTGCCCCAGATTAT
77090172 CAAAAAGGGCTTTGCCCCA-ATTAT
1 CAAAAAGGGCTTTGCCCCAGATTAT
77090196 TTAAAGAGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGATTAT
Found at i:77095593 original size:91 final size:91
Alignment explanation
Indices: 77095498--77095680 Score: 348
Period size: 91 Copynumber: 2.0 Consensus size: 91
77095488 GTCCAGCATC
*
77095498 ATAAGTTTTTTTTAGAAATTATTATTTTAGGTTGTCTCCTTAAACTGAAGTATTATCTTGACATT
1 ATAAGTTTTTTTTAGAAATTATTATTTTAGGTTGTCTCCTTAAACTAAAGTATTATCTTGACATT
*
77095563 TTAAAATTTACAAGTTTGATATTAAA
66 TTAAAATTTACAAGTTTGATATCAAA
77095589 ATAAGTTTTTTTTAGAAATTATTATTTTAGGTTGTCTCCTTAAACTAAAGTATTATCTTGACATT
1 ATAAGTTTTTTTTAGAAATTATTATTTTAGGTTGTCTCCTTAAACTAAAGTATTATCTTGACATT
77095654 TTAAAATTTACAAGTTTGATATCAAA
66 TTAAAATTTACAAGTTTGATATCAAA
77095680 A
1 A
77095681 CCATAATTTT
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 90 1.00
ACGTcount: A:0.35, C:0.08, G:0.10, T:0.46
Consensus pattern (91 bp):
ATAAGTTTTTTTTAGAAATTATTATTTTAGGTTGTCTCCTTAAACTAAAGTATTATCTTGACATT
TTAAAATTTACAAGTTTGATATCAAA
Found at i:77099381 original size:10 final size:10
Alignment explanation
Indices: 77099368--77099399 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
77099358 TATGTGTTAA
77099368 CTCTTTCTCT
1 CTCTTTCTCT
77099378 CTCTTTCTCT
1 CTCTTTCTCT
77099388 CTCTTTCTCT
1 CTCTTTCTCT
77099398 CT
1 CT
77099400 TCTATCGCGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (10 bp):
CTCTTTCTCT
Found at i:77105820 original size:48 final size:47
Alignment explanation
Indices: 77105722--77106085 Score: 269
Period size: 48 Copynumber: 7.6 Consensus size: 47
77105712 GTAAATTACT
* * *
77105722 GATGCCATGTCCCAGACATGGTCTT--ATTGGCTCACATGTTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACA-GTCGAAGCC
* * *
77105768 GATGCAATGTCCTAGACATGGTCTTACACTGGCTCACACGTCGAAGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACA-GTCGAAGCC
* * * *
77105816 GATGCCATGTCCCAGACATGATCTTACACTGGTTCTCA-TCACAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAGTC-GAA-GCC
* * *
77105864 GATGCCATGTCCCAGACATGGTCTTACTCTGGCTCACA-TAAC-ATTGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAGT--CGA-AGCC
* * * * * **
77105912 GATGCCATG-CTTCAAACATGGTCTTACACTAGCTCGCA-TAATGTGGCC
1 GATGCCATGTC-CCAGACATGGTCTTACACTGGCTCACAGT--CGAAGCC
* * * **
77105960 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-TAATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAGT--CGAAGCC
* * * **
77106008 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-TAATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAGT--CGAAGCC
77106056 GATGCCATGTCCCAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
77106086 AGCACACATA
Statistics
Matches: 273, Mismatches: 35, Indels: 18
0.84 0.11 0.06
Matches are distributed among these distances:
46 25 0.09
47 3 0.01
48 243 0.89
49 1 0.00
50 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAGTCGAAGCC
Found at i:77105985 original size:144 final size:144
Alignment explanation
Indices: 77105723--77106088 Score: 395
Period size: 144 Copynumber: 2.6 Consensus size: 144
77105713 TAAATTACTG
* *** * * *
77105723 ATGCCATGTCCCAGACATGGTCTT--ATTGGCTCACATGTTGA-GGCCGATGCAATGTCCTAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-AACATGGCCGATGCCATGTCCCAAAC
* * ** ** * * *
77105785 ATGGTCTTACACTGGCTCACA-CGTCGAAGCTGATGCCATGTCCCAGACATGATCTTACACTGGT
65 ATGGTCTTACACTAGCTCGCATAAT-GTGGCCGATGCCATGTCCCAGACATGATCTTACACTAGC
*
77105849 TCTCATCACA-AT-GCCG
129 TCTCAT-A-ATATGGCCA
* * * *
77105865 ATGCCATGTCCCAGACATGGTCTTACTCTGGCTCACATAACATTGTCGATGCCATG-CTTCAAAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACATGGCCGATGCCATGTC-CCAAAC
*
77105929 ATGGTCTTACACTAGCTCGCATAATGTGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
65 ATGGTCTTACACTAGCTCGCATAATGTGGCCGATGCCATGTCCCAGACATGATCTTACACTAGCT
*
77105994 CTCATAATGTGGCCA
130 CTCATAATATGGCCA
* ** *
77106009 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACATGGCCGATGCCATGTCCCAAACA
77106074 TGGTCTTACACTAGC
66 TGGTCTTACACTAGC
77106089 ACACATATCA
Statistics
Matches: 185, Mismatches: 31, Indels: 14
0.80 0.13 0.06
Matches are distributed among these distances:
142 25 0.14
143 4 0.02
144 154 0.83
145 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACATGGCCGATGCCATGTCCCAAACA
TGGTCTTACACTAGCTCGCATAATGTGGCCGATGCCATGTCCCAGACATGATCTTACACTAGCTC
TCATAATATGGCCA
Found at i:77106086 original size:96 final size:96
Alignment explanation
Indices: 77105722--77106095 Score: 409
Period size: 96 Copynumber: 3.9 Consensus size: 96
77105712 GTAAATTACT
* * ** * * *
77105722 GATGCCATGTCCCAGACATGGTCTT--ATTGGCTCACATGTTGAGGCCGATGCAATGTCCTAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGAC
* ** * *
77105785 ATGGTCTTACACTGGCTCACA-CGTCGAAGCT
66 ATGGTCTTACACTAGCTCACATAAT-GTAGCC
* * *
77105816 GATGCCATGTCCCAGACATGATCTTACACTGGTTCTCATCACA-AT-GCCGATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-A-ATGTGGCCGATGCCATGTCCCAG
* * ** * *
77105879 ACATGGTCTTACTCTGGCTCACATAACATTGTC
64 ACATGGTCTTACACTAGCTCACATAATGTAGCC
* * * *
77105912 GATGCCATG-CTTCAAACATGGTCTTACACTAGCTCGCATAATGTGGCCGATGCCATGTCCCAGA
1 GATGCCATGTC-CCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGA
* *
77105976 CATGGTCTTACACTAGCTCTCATAATGTGGCC
65 CATGGTCTTACACTAGCTCACATAATGTAGCC
*
77106008 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGAC
*
77106073 ATGGTCTTACACTAGCACACATA
66 ATGGTCTTACACTAGCTCACATA
77106096 TCACCCAAAT
Statistics
Matches: 231, Mismatches: 40, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
94 25 0.11
95 3 0.01
96 202 0.87
97 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCACATAATGTAGCC
Found at i:77113618 original size:48 final size:48
Alignment explanation
Indices: 77113545--77114005 Score: 529
Period size: 48 Copynumber: 9.6 Consensus size: 48
77113535 TAAATTGCCA
* * * *
77113545 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACAT-GTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCG
* * * * ** * *
77113593 ATGCCATGTCCTAGACATGGACTTACATTGGCTCACA-CGTCGAGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCG
*
77113641 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAA--T-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA--T-AATGTGGCCG
* * ** * *
77113689 ATGCCATGTCCCATACATGGTCTTACTCTGGCTCTCATAACATTGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
* * *
77113737 ATGCCATG-CTCCAAACATGGTCTTACACTAGCTCGCATAATGTGGCCG
1 ATGCCATGTC-CCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
77113785 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
*
77113833 ATGCTATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
* ** *
77113881 ATACCATGTCCCAGACATAATCTTACACTGGCTCTCATAATGTGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
* * **
77113929 ATGCCATGTCCCAAACATGGCCTTACACTGGCTCTCATAATGTGGCTA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
* *
77113977 ACGCCATGTCCTAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
77114006 AGTACATATA
Statistics
Matches: 358, Mismatches: 45, Indels: 20
0.85 0.11 0.05
Matches are distributed among these distances:
45 2 0.01
46 1 0.00
47 2 0.01
48 352 0.98
49 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
Found at i:77121904 original size:28 final size:28
Alignment explanation
Indices: 77121872--77121927 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
77121862 TTTTTCGTGT
77121872 TCATTTTATTTTTGGTTATGAGTATGTC
1 TCATTTTATTTTTGGTTATGAGTATGTC
77121900 TCATTTTATTTTTGGTTATGAGTATGTC
1 TCATTTTATTTTTGGTTATGAGTATGTC
77121928 AACTTGATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.18, C:0.07, G:0.18, T:0.57
Consensus pattern (28 bp):
TCATTTTATTTTTGGTTATGAGTATGTC
Found at i:77124577 original size:25 final size:25
Alignment explanation
Indices: 77124543--77124590 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
77124533 CACAAATGCT
77124543 GCTCTTTATGAGAGTCCTAATATAG
1 GCTCTTTATGAGAGTCCTAATATAG
**
77124568 GCTCTTTATGAGCTTCCTAATAT
1 GCTCTTTATGAGAGTCCTAATAT
77124591 GGGTCATTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (25 bp):
GCTCTTTATGAGAGTCCTAATATAG
Found at i:77124722 original size:23 final size:22
Alignment explanation
Indices: 77124655--77124756 Score: 80
Period size: 23 Copynumber: 4.4 Consensus size: 22
77124645 TTCAGAGTTA
77124655 CCTGTTA-AGCTCAATAAGCTT
1 CCTGTTATAGCTCAATAAGCTT
* * *
77124676 CCTGTTCTAAACTCTTATAAGCTT
1 CCTGTTAT-AGCTC-AATAAGCTT
*
77124700 CCTGTTATAGCTCGGATAAGCTT
1 CCTGTTATAGCTC-AATAAGCTT
* * *
77124723 CCTGTTACATGACTCACATGAGCAT
1 CCTGTTATA-G-CTCA-ATAAGCTT
77124748 CCTGTTATA
1 CCTGTTATA
77124757 TGGCTCGAGA
Statistics
Matches: 63, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
21 6 0.10
23 24 0.38
24 16 0.25
25 17 0.27
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (22 bp):
CCTGTTATAGCTCAATAAGCTT
Found at i:77127122 original size:43 final size:43
Alignment explanation
Indices: 77126960--77127132 Score: 154
Period size: 43 Copynumber: 4.0 Consensus size: 43
77126950 ACATTAGGTT
* *
77126960 ATCGAGATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTAGGACATTGGC
* * * *
77127003 ATTG-TATTGAGATTACATGTAGGACCATGTCTGGGACATTGGC
1 ATCGATA-TGTGATTACATGTAAGACCATGTCTAGGACATTGGC
* ** *** * *
77127046 ATCGTTAAT-CAATTTTGTGTAAGACCCTGTCTAGGACAGTGGC
1 ATCGAT-ATGTGATTACATGTAAGACCATGTCTAGGACATTGGC
* * *
77127089 ATCGATATGTGATAACATGTAAGACCATATCTAGGATA-TGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTAGGACATTGGC
77127131 AT
1 AT
77127133 TTTACGAGCT
Statistics
Matches: 102, Mismatches: 24, Indels: 9
0.76 0.18 0.07
Matches are distributed among these distances:
42 9 0.09
43 90 0.88
44 2 0.02
45 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
ATCGATATGTGATTACATGTAAGACCATGTCTAGGACATTGGC
Found at i:77135697 original size:23 final size:23
Alignment explanation
Indices: 77135648--77135700 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
77135638 CTAGCGGTGA
*
77135648 CATGTGACAACCTCTCAGTATAC
1 CATGTGGCAACCTCTCAGTATAC
**
77135671 CATGTGGCAACCTCTCAGTATGT
1 CATGTGGCAACCTCTCAGTATAC
77135694 CATGTGG
1 CATGTGG
77135701 AAAATATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (23 bp):
CATGTGGCAACCTCTCAGTATAC
Found at i:77135723 original size:17 final size:17
Alignment explanation
Indices: 77135701--77135742 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
77135691 TGTCATGTGG
* *
77135701 AAAATATATATTTTTAA
1 AAAATATAAATATTTAA
*
77135718 AAAATAAAAATATTTAA
1 AAAATATAAATATTTAA
77135735 AAAATATA
1 AAAATATA
77135743 CAATTAAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAAATATAAATATTTAA
Found at i:77138654 original size:45 final size:45
Alignment explanation
Indices: 77138602--77138805 Score: 279
Period size: 45 Copynumber: 4.6 Consensus size: 45
77138592 TATCATACGG
* *
77138602 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATATCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGA
*
77138647 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGA
* * * *
77138692 TACTATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCGATAAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGA
* * *
77138737 TACTATTCGGGCCTTCGAGCCTAGAAGGCTATAATACCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGA
*
77138782 TGA-TA-TCGGG-CTTCGAGCCTAGCA
1 T-ACTATTCGGGCCTTTGAGCCTAGCA
77138806 AGTGAAATGC
Statistics
Matches: 144, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
43 13 0.09
44 5 0.03
45 125 0.87
46 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGA
Found at i:77139924 original size:18 final size:18
Alignment explanation
Indices: 77139901--77140018 Score: 53
Period size: 18 Copynumber: 6.6 Consensus size: 18
77139891 TTTATCAGTT
77139901 TCATTCAGTAACATTCAA
1 TCATTCAGTAACATTCAA
*
77139919 TCATTC-GATAACAATT-AG
1 TCATTCAG-TAAC-ATTCAA
* * * *
77139937 TCGTTCAATAATATTCAG
1 TCATTCAGTAACATTCAA
* ** * *
77139955 TCACTCTTTAACAGTCAG
1 TCATTCAGTAACATTCAA
* *
77139973 TTATTCAGTAACGA-TAAA
1 TCATTCAGTAAC-ATTCAA
* *
77139991 TTATTCAGTAACAGTCAA
1 TCATTCAGTAACATTCAA
*
77140009 TTATTCAGTA
1 TCATTCAGTA
77140019 GCAATCAGTT
Statistics
Matches: 77, Mismatches: 17, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
17 5 0.06
18 68 0.88
19 4 0.05
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (18 bp):
TCATTCAGTAACATTCAA
Found at i:77140013 original size:36 final size:36
Alignment explanation
Indices: 77139963--77140049 Score: 120
Period size: 36 Copynumber: 2.4 Consensus size: 36
77139953 AGTCACTCTT
* *
77139963 TAACAGTCAGTTATTCAGTAACGATAAATTATTCAG
1 TAACAGTCAGTTATTCAGTAACAATAAATTATCCAG
* * * *
77139999 TAACAGTCAATTATTCAGTAGCAATCAGTTATCCAG
1 TAACAGTCAGTTATTCAGTAACAATAAATTATCCAG
77140035 TAACAGTCAGTTATT
1 TAACAGTCAGTTATT
77140050 TAATACCTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (36 bp):
TAACAGTCAGTTATTCAGTAACAATAAATTATCCAG
Found at i:77140030 original size:18 final size:18
Alignment explanation
Indices: 77139963--77140049 Score: 93
Period size: 18 Copynumber: 4.8 Consensus size: 18
77139953 AGTCACTCTT
*
77139963 TAACAGTCAGTTATTCAG
1 TAACAATCAGTTATTCAG
* * *
77139981 TAACGATAAATTATTCAG
1 TAACAATCAGTTATTCAG
* *
77139999 TAACAGTCAATTATTCAG
1 TAACAATCAGTTATTCAG
* *
77140017 TAGCAATCAGTTATCCAG
1 TAACAATCAGTTATTCAG
*
77140035 TAACAGTCAGTTATT
1 TAACAATCAGTTATT
77140050 TAATACCTTT
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 55 1.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (18 bp):
TAACAATCAGTTATTCAG
Found at i:77140272 original size:51 final size:54
Alignment explanation
Indices: 77140170--77140284 Score: 146
Period size: 51 Copynumber: 2.2 Consensus size: 54
77140160 CTGTAACGGT
* * *
77140170 AACAGTAACAGTAACAGTAGCGGTACACAGATTACCTCATCGGAAAAAATCCAG
1 AACAGTAACAATAACAGTAGAGGTACACAGAGTACCTCATCGGAAAAAATCCAG
* * **
77140224 AATAGTAACAATAACAGTA-AGGTACA-A-AGTACCTCTTCGGAACGAATCCAG
1 AACAGTAACAATAACAGTAGAGGTACACAGAGTACCTCATCGGAAAAAATCCAG
77140275 AACAGTAACA
1 AACAGTAACA
77140285 GTAAGGCGAC
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
51 29 0.55
52 1 0.02
53 6 0.11
54 17 0.32
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.17
Consensus pattern (54 bp):
AACAGTAACAATAACAGTAGAGGTACACAGAGTACCTCATCGGAAAAAATCCAG
Found at i:77143136 original size:40 final size:37
Alignment explanation
Indices: 77143074--77143172 Score: 90
Period size: 40 Copynumber: 2.5 Consensus size: 37
77143064 ACGGTACCTT
** * *
77143074 TTGGTGTGTAGGGCTGCATGGGTTGATTATGTCCCCAAAC
1 TTGGTGTGTAGGG-TGGTTGGGTCGATTATATCCCC--AC
*
77143114 TTGGTGTGTAGGGTAGGTTGGGTCGATTTTATCCCCAC
1 TTGGTGTGTAGGGT-GGTTGGGTCGATTATATCCCCAC
* *
77143152 ATGGTGTGTTGGGTTGGTTGG
1 TTGGTGTGTAGGG-TGGTTGG
77143173 AGATAGTGTG
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
38 19 0.38
39 2 0.04
40 29 0.58
ACGTcount: A:0.13, C:0.13, G:0.37, T:0.36
Consensus pattern (37 bp):
TTGGTGTGTAGGGTGGTTGGGTCGATTATATCCCCAC
Found at i:77145506 original size:36 final size:34
Alignment explanation
Indices: 77145424--77145498 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 34
77145414 TAGATGTTCT
* *
77145424 TTTTAGTTCTTTTATTTATTTATATATTTTTATAAAA
1 TTTTAATT-TTTTATTAATTTATATA--TTTATAAAA
77145461 TTTTAATTTTTTATTAATTTATATA-TTATAAAA
1 TTTTAATTTTTTATTAATTTATATATTTATAAAA
77145494 TTTTA
1 TTTTA
77145499 TATATTTTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
33 13 0.36
36 16 0.44
37 7 0.19
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (34 bp):
TTTTAATTTTTTATTAATTTATATATTTATAAAA
Found at i:77146947 original size:14 final size:15
Alignment explanation
Indices: 77146918--77146951 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
77146908 TTTAGGTTTG
77146918 AAAATTTTAATTAATT
1 AAAATTTT-ATTAATT
77146934 AAAATTTT-TTAATT
1 AAAATTTTATTAATT
77146948 AAAA
1 AAAA
77146952 AATTATTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 10 0.56
16 8 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AAAATTTTATTAATT
Found at i:77146960 original size:18 final size:17
Alignment explanation
Indices: 77146922--77146960 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
77146912 GGTTTGAAAA
77146922 TTTTAATTAATTAAAATT
1 TTTTAATTAA-TAAAATT
77146940 TTTTAATTAA-AAAATT
1 TTTTAATTAATAAAATT
77146956 ATTTT
1 -TTTT
77146961 CATCCCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 4 0.20
18 10 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTAATTAATAAAATT
Found at i:77147115 original size:15 final size:15
Alignment explanation
Indices: 77147080--77147127 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
77147070 AAATAATAAC
* *
77147080 ATAAATAACTAAAAC
1 ATAAATAATTAAAAT
* *
77147095 AT-AATATTTTAAAT
1 ATAAATAATTAAAAT
77147109 ATAAATAATTAAAAT
1 ATAAATAATTAAAAT
77147124 ATAA
1 ATAA
77147128 CTCGAGAAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 10 0.38
15 16 0.62
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAAATAATTAAAAT
Found at i:77149055 original size:23 final size:23
Alignment explanation
Indices: 77149024--77149070 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
77149014 GAATGGTTGT
*
77149024 TCATTTTTCTTTATGATGCCATG
1 TCATATTTCTTTATGATGCCATG
77149047 TCATATTTCTTTATGATGCCATG
1 TCATATTTCTTTATGATGCCATG
77149070 T
1 T
77149071 ACTATGTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (23 bp):
TCATATTTCTTTATGATGCCATG
Found at i:77152317 original size:21 final size:21
Alignment explanation
Indices: 77152291--77152360 Score: 74
Period size: 21 Copynumber: 3.4 Consensus size: 21
77152281 CAAATTCCTG
77152291 GTTTGAATTCATTGAGTGTTT
1 GTTTGAATTCATTGAGTGTTT
* * *
77152312 GTTTGAATCCTAATCAGATG---
1 GTTTGAATTC-ATTGAG-TGTTT
77152332 GTTTGAATTCATTGAGTGTTT
1 GTTTGAATTCATTGAGTGTTT
77152353 GTTTGAAT
1 GTTTGAAT
77152361 CCTAATCAGA
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
18 2 0.05
19 4 0.11
20 9 0.24
21 17 0.45
22 4 0.11
23 2 0.05
ACGTcount: A:0.23, C:0.07, G:0.23, T:0.47
Consensus pattern (21 bp):
GTTTGAATTCATTGAGTGTTT
Found at i:77152335 original size:41 final size:41
Alignment explanation
Indices: 77152289--77152370 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
77152279 AACAAATTCC
77152289 TGGTTTGAATTCATTGAGTGTTTGTTTGAATCCTAATCAGA
1 TGGTTTGAATTCATTGAGTGTTTGTTTGAATCCTAATCAGA
77152330 TGGTTTGAATTCATTGAGTGTTTGTTTGAATCCTAATCAGA
1 TGGTTTGAATTCATTGAGTGTTTGTTTGAATCCTAATCAGA
77152371 CCCTAATGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.44
Consensus pattern (41 bp):
TGGTTTGAATTCATTGAGTGTTTGTTTGAATCCTAATCAGA
Found at i:77156145 original size:54 final size:52
Alignment explanation
Indices: 77156038--77156148 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 52
77156028 AAATTAACAG
**
77156038 TCATTTTTAATATTCTAACTTTTATAATAGTAAAATTAATCACACTAACTTT
1 TCATTTTTAATATTCTAACTTTTATAATAACAAAATTAATCACACTAACTTT
* * *
77156090 TCATTTTTAATATCTTTAACTTTTATAATAACACAATTTAATCACA-TCAAGTTT
1 TCATTTTTAATAT-TCTAACTTTTATAATAACA-AAATTAATCACACT-AACTTT
77156144 TCATT
1 TCATT
77156149 ATTTTTCATT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
52 13 0.25
53 17 0.33
54 21 0.41
ACGTcount: A:0.37, C:0.14, G:0.02, T:0.47
Consensus pattern (52 bp):
TCATTTTTAATATTCTAACTTTTATAATAACAAAATTAATCACACTAACTTT
Found at i:77156483 original size:15 final size:16
Alignment explanation
Indices: 77156453--77156485 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
77156443 GTAATTTTAA
77156453 TTATATACACATATAT
1 TTATATACACATATAT
*
77156469 TTATATATA-ATATAT
1 TTATATACACATATAT
77156484 TT
1 TT
77156486 TCATATTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATATACACATATAT
Found at i:77160313 original size:26 final size:24
Alignment explanation
Indices: 77160274--77160323 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
77160264 ATTTCATTAA
*
77160274 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
77160300 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
77160324 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:77160809 original size:76 final size:75
Alignment explanation
Indices: 77160680--77161328 Score: 516
Period size: 76 Copynumber: 8.6 Consensus size: 75
77160670 ACTAAGGCTT
* * * * * *
77160680 GCTGATTTAAGATTGTGACCCTTGGTTTTCTAACAACTCGC-GAACCTATGTTCACAGTTGATAT
1 GCTGATTTAAGATCGCGA-CCTTCGTTTTCTAACAGCTTGCTG-ACCTACGTTCACAGTTGATAT
**
77160744 TTTTTACGGTTT
64 TTTTTACGGTCC
* * * * *
77160756 GCTGATTTAAGATCGTGACCTTTAGTTTTCTAACAGCTCGCTAACCTACGTTCACAGCTGATATT
1 GCTGATTTAAGATCGCGACC-TTCGTTTTCTAACAGCTTGCTGACCTACGTTCACAGTTGATATT
* *
77160821 TTTTATGGTCT
65 TTTTACGGTCC
* * * * ** *
77160832 GCTGATTTAAGATCACAACCCTCGATTTTCTAATAGCTCACTGACCTACGTTCATAGTTGATATT
1 GCTGATTTAAGATCGCGACCTTCG-TTTTCTAACAGCTTGCTGACCTACGTTCACAGTTGATATT
*
77160897 TTTTATGGTCC
65 TTTTACGGTCC
* * * * * * *
77160908 GCTTATTTAAGATTGTGACCCTCGATTTTCTAACAACTTGTTGACCTACGTTCACAATTGATATT
1 GCTGATTTAAGATCGCGACCTTCG-TTTTCTAACAGCTTGCTGACCTACGTTCACAGTTGATATT
*
77160973 TTTTGCGGTCC
65 TTTTACGGTCC
* * * * * *
77160984 GTTGATTTAAGATCGCGACCCTTGGTTTTTTAACAGCTTTCTTACCTACGTTCACAGTTGTTATT
1 GCTGATTTAAGATCGCGA-CCTTCGTTTTCTAACAGCTTGCTGACCTACGTTCACAGTTGATATT
77161049 TTTTACGGTCC
65 TTTTACGGTCC
* * * * * *
77161060 ACTGATTTAATATTGCGACCCTCGGTTTTCTAATAGCTTGTTGACCTACGTTCACA-TCTGATAT
1 GCTGATTTAAGATCGCGACCTTC-GTTTTCTAACAGCTTGCTGACCTACGTTCACAGT-TGATAT
**
77161124 TTTTTACTATCC
64 TTTTTACGGTCC
* * * * * ** *
77161136 GCTGCTTTAAGATCGCGACCCTCGATTTTCTAATAGCTTGTTGACCTATGTTCACAACTGTTA-T
1 GCTGATTTAAGATCGCGACCTTCG-TTTTCTAACAGCTTGCTGACCTACGTTCACAGTTGATATT
*
77161200 TTTTACGGTTC
65 TTTTACGGTCC
* * * * * * * * **
77161211 GCTGATTTAAGGTCACGATCC-TAGTTTTCTGATAGCTCGTTGACCTATGTTCACAACTGATA-T
1 GCTGATTTAAGATCGCGA-CCTTCGTTTTCTAACAGCTTGCTGACCTACGTTCACAGTTGATATT
* * *
77161274 TTTTATGGGCT
65 TTTTACGGTCC
** * * *
77161285 ATTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTGA
1 GCTGATTTAAGATCGCGACCTTCG-TTTTCTAACAGCTTGCTGA
77161329 TTCACGATCA
Statistics
Matches: 473, Mismatches: 89, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
73 2 0.00
74 60 0.13
75 51 0.11
76 356 0.75
77 4 0.01
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (75 bp):
GCTGATTTAAGATCGCGACCTTCGTTTTCTAACAGCTTGCTGACCTACGTTCACAGTTGATATTT
TTTACGGTCC
Found at i:77160955 original size:152 final size:152
Alignment explanation
Indices: 77160680--77161328 Score: 626
Period size: 152 Copynumber: 4.3 Consensus size: 152
77160670 ACTAAGGCTT
*** * * * *
77160680 GCTGATTTAAGATTGTGACCCTTGGTTTTCTAACAACTCGC-GAACCTATGTTCACAGTTGATAT
1 GCTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTG-ACCTACGTTCACAGTTGATAT
** * ** * *
77160744 TTTTTACGGTTTGCTGATTTAAGATCGTGA-CCTTTAGTTTTCTAACAGCTCGCTAACCTACGTT
65 TTTTTACGGTCCGCTGATTTAAGATCGCGACCCTCGA-TTTTCTAACAGCTCGTTGACCTACGTT
* *
77160808 CACAGCTGATATTTTTTATGGTCT
129 CACAACTGATATTTTTTATGGTCC
* * * *
77160832 GCTGATTTAAGATCACAACCCTCGATTTTCTAATAGCTCACTGACCTACGTTCATAGTTGATATT
1 GCTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATATT
* * * * * *
77160897 TTTTATGGTCCGCTTATTTAAGATTGTGACCCTCGATTTTCTAACAACTTGTTGACCTACGTTCA
66 TTTTACGGTCCGCTGATTTAAGATCGCGACCCTCGATTTTCTAACAGCTCGTTGACCTACGTTCA
* **
77160962 CAATTGATATTTTTTGCGGTCC
131 CAACTGATATTTTTTATGGTCC
* * * * * ** * *
77160984 GTTGATTTAAGATCGCGACCCTTGGTTTTTTAACAGCTTTCTTACCTACGTTCACAGTTGTTATT
1 GCTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATATT
* * * * * *
77161049 TTTTACGGTCCACTGATTTAATATTGCGACCCTCGGTTTTCTAATAGCTTGTTGACCTACGTTCA
66 TTTTACGGTCCGCTGATTTAAGATCGCGACCCTCGATTTTCTAACAGCTCGTTGACCTACGTTCA
* *
77161114 CATCTGATATTTTTTACT-ATCC
131 CAACTGATATTTTTTA-TGGTCC
* * * * * * ** *
77161136 GCTGCTTTAAGATCGCGACCCTCGATTTTCTAATAGCTTGTTGACCTATGTTCACAACTGTTA-T
1 GCTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATATT
* * * * * * * *
77161200 TTTTACGGTTCGCTGATTTAAGGTCACGATCCTAG-TTTTCTGATAGCTCGTTGACCTATGTTCA
66 TTTTACGGTCCGCTGATTTAAGATCGCGACCCTCGATTTTCTAACAGCTCGTTGACCTACGTTCA
* *
77161264 CAACTGATA-TTTTTATGGGCT
131 CAACTGATATTTTTTATGGTCC
**
77161285 ATTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTGA
1 GCTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTGA
77161329 TTCACGATCA
Statistics
Matches: 407, Mismatches: 86, Indels: 11
0.81 0.17 0.02
Matches are distributed among these distances:
148 1 0.00
149 44 0.11
150 34 0.08
151 28 0.07
152 295 0.72
153 5 0.01
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (152 bp):
GCTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTGACCTACGTTCACAGTTGATATT
TTTTACGGTCCGCTGATTTAAGATCGCGACCCTCGATTTTCTAACAGCTCGTTGACCTACGTTCA
CAACTGATATTTTTTATGGTCC
Found at i:77161083 original size:228 final size:228
Alignment explanation
Indices: 77160680--77161328 Score: 725
Period size: 228 Copynumber: 2.9 Consensus size: 228
77160670 ACTAAGGCTT
* * * * *
77160680 GCTGATTTAAGATTGTGACCCTTGGTTTTCTAACAACTCG-CGAACCTATGTTCACAGTTGATAT
1 GCTGATTTAAGATTGTGACCCTCGATTTTCTAACAACTTGTTG-ACCTATGTTCACAATTGATAT
* * *
77160744 TTTTTACGGTTTGCTGATTTAAGATCGTGACCTTTAGTTTTCTAACAGCTCGCTAACCTACGTTC
65 TTTTTACGGTTCGCTGATTTAAGATCGCGACCCTTAGTTTTCTAACAGCTCGCTAACCTACGTTC
* **
77160809 ACAGCTGATATTTTTTATGGTCTGCTGATTTAAGATCACAACCCTCGATTTTCTAATAGCTCACT
130 ACAGCTGATATTTTTTACGGTCCACTGATTTAAGATCACAACCCTCGATTTTCTAATAGCTCACT
* *
77160874 GACCTACGTTCATAGT-TGATATTTTTTA-TGGTCC
195 GACCTACGTTCACA-TCTGATATTTTTTACT-ATCC
* *
77160908 GCTTATTTAAGATTGTGACCCTCGATTTTCTAACAACTTGTTGACCTACGTTCACAATTGATATT
1 GCTGATTTAAGATTGTGACCCTCGATTTTCTAACAACTTGTTGACCTATGTTCACAATTGATATT
* * * * * ** *
77160973 TTTTGCGGTCCGTTGATTTAAGATCGCGACCCTTGGTTTTTTAACAGCTTTCTTACCTACGTTCA
66 TTTTACGGTTCGCTGATTTAAGATCGCGACCCTTAGTTTTCTAACAGCTCGCTAACCTACGTTCA
* * * ** * * ***
77161038 CAGTTGTTATTTTTTACGGTCCACTGATTTAATATTGCGACCCTCGGTTTTCTAATAGCTTGTTG
131 CAGCTGATATTTTTTACGGTCCACTGATTTAAGATCACAACCCTCGATTTTCTAATAGCTCACTG
77161103 ACCTACGTTCACATCTGATATTTTTTACTATCC
196 ACCTACGTTCACATCTGATATTTTTTACTATCC
* * * * * * *
77161136 GCTGCTTTAAGATCGCGACCCTCGATTTTCTAATAGCTTGTTGACCTATGTTCACAACTGTTA-T
1 GCTGATTTAAGATTGTGACCCTCGATTTTCTAACAACTTGTTGACCTATGTTCACAATTGATATT
* * * * * * * *
77161200 TTTTACGGTTCGCTGATTTAAGGTCACGATCC-TAGTTTTCTGATAGCTCGTTGACCTATGTTCA
66 TTTTACGGTTCGCTGATTTAAGATCGCGACCCTTAGTTTTCTAACAGCTCGCTAACCTACGTTCA
* * * * * * * *
77161264 CAACTGATA-TTTTTATGGGCTATTGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGCTG
131 CAGCTGATATTTTTTACGGTCCACTGATTTAAGATCACAACCCTCGATTTTCTAATAGCTCACTG
77161328 A
196 A
77161329 TTCACGATCA
Statistics
Matches: 347, Mismatches: 71, Indels: 9
0.81 0.17 0.02
Matches are distributed among these distances:
225 45 0.13
226 29 0.08
227 28 0.08
228 243 0.70
229 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (228 bp):
GCTGATTTAAGATTGTGACCCTCGATTTTCTAACAACTTGTTGACCTATGTTCACAATTGATATT
TTTTACGGTTCGCTGATTTAAGATCGCGACCCTTAGTTTTCTAACAGCTCGCTAACCTACGTTCA
CAGCTGATATTTTTTACGGTCCACTGATTTAAGATCACAACCCTCGATTTTCTAATAGCTCACTG
ACCTACGTTCACATCTGATATTTTTTACTATCC
Found at i:77161330 original size:39 final size:36
Alignment explanation
Indices: 77161287--77161367 Score: 90
Period size: 39 Copynumber: 2.2 Consensus size: 36
77161277 TATGGGCTAT
77161287 TGATTTAAGATCACGACCCTCGATTTTCTAACAGCTCGC
1 TGATTTAAGATCACGACCCTCG-TTTT-TAA-AGCTCGC
* * **
77161326 TGATTCACGATCACGACTGTCGTTTTTAAAGCTCGC
1 TGATTTAAGATCACGACCCTCGTTTTTAAAGCTCGC
*
77161362 TAATTT
1 TGATTT
77161368 CTTCAACAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
36 11 0.31
37 3 0.08
38 4 0.11
39 18 0.50
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.35
Consensus pattern (36 bp):
TGATTTAAGATCACGACCCTCGTTTTTAAAGCTCGC
Found at i:77164096 original size:17 final size:17
Alignment explanation
Indices: 77164076--77164109 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
77164066 CTATGAAGAG
77164076 ATTTGAACTTAATCGTC
1 ATTTGAACTTAATCGTC
*
77164093 ATTTGAATTTAATCGTC
1 ATTTGAACTTAATCGTC
77164110 CAATCATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (17 bp):
ATTTGAACTTAATCGTC
Found at i:77165058 original size:37 final size:37
Alignment explanation
Indices: 77165008--77165081 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
77164998 TAGGAAAATG
77165008 ACTGATTTGTAATAGGGTAAAAATTGTGAGCATTTAT
1 ACTGATTTGTAATAGGGTAAAAATTGTGAGCATTTAT
77165045 ACTGATTTGTAATAGGGTAAAAATTGTGAGCATTTAT
1 ACTGATTTGTAATAGGGTAAAAATTGTGAGCATTTAT
77165082 GTTGGAATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (37 bp):
ACTGATTTGTAATAGGGTAAAAATTGTGAGCATTTAT
Found at i:77176116 original size:30 final size:30
Alignment explanation
Indices: 77176080--77176155 Score: 107
Period size: 30 Copynumber: 2.5 Consensus size: 30
77176070 TGGTTGACCC
* *
77176080 ATCCCTTTTCATAATTCGATAACCAAAGTT
1 ATCCCTTTTCATAATTCGACAACCAAAGCT
* * *
77176110 ATCCCTTTTCATAGTTCGACAGCCGAAGCT
1 ATCCCTTTTCATAATTCGACAACCAAAGCT
77176140 ATCCCTTTTCATAATT
1 ATCCCTTTTCATAATT
77176156 TGATGGTCGT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.37
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCGACAACCAAAGCT
Found at i:77176174 original size:30 final size:30
Alignment explanation
Indices: 77176140--77176217 Score: 138
Period size: 30 Copynumber: 2.6 Consensus size: 30
77176130 AGCCGAAGCT
77176140 ATCCCTTTTCATAATTTGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
* *
77176170 ATCCCTTTTCATTATTCGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
77176200 ATCCCTTTTCATAATTTG
1 ATCCCTTTTCATAATTTG
77176218 GTAGCCAAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.19, C:0.27, G:0.12, T:0.42
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTCGTCACC
Found at i:77177771 original size:42 final size:42
Alignment explanation
Indices: 77177645--77177808 Score: 158
Period size: 42 Copynumber: 4.0 Consensus size: 42
77177635 AATCATAGCA
* * ** *
77177645 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCTCATAACG
* * *
77177687 ATG--ATAGCCCAG-CTATGGTCTTACACG-ATTCTCATATCG
1 ATGCCATATCCCAGAC-ATGGTCTTACACGAAATCTCATAACG
* * *
77177726 ATGCCATGTCCTAGACATGGTTTTACACGAAATCTCATAACG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCTCATAACG
* *
77177768 ATGCCATATCCCAGATATGGTCTTACAC-ATAAACTCATAAC
1 ATGCCATATCCCAGACATGGTCTTACACGA-AATCTCATAAC
77177809 CCTAATGTCA
Statistics
Matches: 100, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
39 13 0.13
40 20 0.20
41 19 0.19
42 48 0.48
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGACATGGTCTTACACGAAATCTCATAACG
Found at i:77179071 original size:36 final size:36
Alignment explanation
Indices: 77179024--77179097 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 36
77179014 AGTTAGTCCT
*
77179024 TAGGCTTGTAAAATAAAAATCATGCAATTTCATCCC
1 TAGGCTCGTAAAATAAAAATCATGCAATTTCATCCC
* *
77179060 TAGGCTCGTAAAATGAAATTCATGCAATTTCATCCC
1 TAGGCTCGTAAAATAAAAATCATGCAATTTCATCCC
77179096 TA
1 TA
77179098 CCCAAGCCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.31
Consensus pattern (36 bp):
TAGGCTCGTAAAATAAAAATCATGCAATTTCATCCC
Found at i:77188279 original size:29 final size:29
Alignment explanation
Indices: 77188225--77188383 Score: 135
Period size: 29 Copynumber: 5.6 Consensus size: 29
77188215 ATGGCTCACT
* * *
77188225 AGGCCCAA-TCTCATTTATATGGCCCATC
1 AGGCCCAATTCACATTCATAAGGCCCATC
* * *
77188253 CGACCCAATTCACGTTCATAAGGCCCATC
1 AGGCCCAATTCACATTCATAAGGCCCATC
77188282 AGGCCCAATTCACATTCATATA-GCCCATC
1 AGGCCCAATTCACATTCATA-AGGCCCATC
* * * *
77188311 AGGCGCAATTCACATTCATATGACCCATT
1 AGGCCCAATTCACATTCATAAGGCCCATC
* * * *
77188340 GGGCCCAA-TCTCATTTATATGGCCCATC
1 AGGCCCAATTCACATTCATAAGGCCCATC
* * *
77188368 CGACCCAAGTCACATT
1 AGGCCCAATTCACATT
77188384 ATATTCATGC
Statistics
Matches: 105, Mismatches: 22, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
28 28 0.27
29 76 0.72
30 1 0.01
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (29 bp):
AGGCCCAATTCACATTCATAAGGCCCATC
Found at i:77188320 original size:58 final size:57
Alignment explanation
Indices: 77188225--77188383 Score: 192
Period size: 58 Copynumber: 2.8 Consensus size: 57
77188215 ATGGCTCACT
* * *
77188225 AGGCCCAATCTCATTTATATGGCCCATCCGACCCAATTCACGTTCATAAGGCCCATC
1 AGGCCCAATCTCATTTATATGGCCCATCAGACCCAATTCACATTCATAAGACCCATC
* * * * * * *
77188282 AGGCCCAATTCACATTCATATAGCCCATCAGGCGCAATTCACATTCATATGACCCATT
1 AGGCCCAA-TCTCATTTATATGGCCCATCAGACCCAATTCACATTCATAAGACCCATC
* * *
77188340 GGGCCCAATCTCATTTATATGGCCCATCCGACCCAAGTCACATT
1 AGGCCCAATCTCATTTATATGGCCCATCAGACCCAATTCACATT
77188384 ATATTCATGC
Statistics
Matches: 83, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
57 37 0.45
58 46 0.55
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (57 bp):
AGGCCCAATCTCATTTATATGGCCCATCAGACCCAATTCACATTCATAAGACCCATC
Found at i:77188622 original size:16 final size:16
Alignment explanation
Indices: 77188589--77188631 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
77188579 GTAGCCAAAG
77188589 TTTCAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
*
77188605 TTTCGGCTTTTCTG-CA
1 TTTCAGCTTTTC-GACA
*
77188621 TTTTAGCTTTT
1 TTTCAGCTTTT
77188632 GCTGATCTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 22 0.96
17 1 0.04
ACGTcount: A:0.12, C:0.21, G:0.14, T:0.53
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:77193899 original size:29 final size:29
Alignment explanation
Indices: 77193859--77194010 Score: 182
Period size: 29 Copynumber: 5.3 Consensus size: 29
77193849 AGGCCCATCT
* *
77193859 CATTTATATGGCCCATCCGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* *
77193888 CGTTCTTATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
*
77193917 CATTCATATGGCCCATCAGCCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
** *
77193946 CATTCATATGGCCCATTGGGCCCAA-TCT
1 CATTCATATGGCCCATCAGGCCCAATTCA
* * * *
77193974 CATTTATATGGCCAATCCGGCCCAAATCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
77194003 CATT-ATAT
1 CATTCATAT
77194011 TCATGCTCAC
Statistics
Matches: 106, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
28 27 0.25
29 79 0.75
ACGTcount: A:0.26, C:0.33, G:0.14, T:0.28
Consensus pattern (29 bp):
CATTCATATGGCCCATCAGGCCCAATTCA
Found at i:77193941 original size:58 final size:57
Alignment explanation
Indices: 77193831--77194010 Score: 186
Period size: 58 Copynumber: 3.2 Consensus size: 57
77193821 ACTCCTACAT
* * * * *
77193831 ACATGCATATGGCTCA-CTAGGCCC-ATCTCATTTATATGGCCCATCCGGCCCAATTC
1 ACATTCATATGGCCCATC-AGGCCCAATCACATTTATATGGCCCATCAGCCCCAATTC
* * *
77193887 ACGTTCTTATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATCAGCCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAA-TCACATTTATATGGCCCATCAGCCCCAATTC
** * * * * *
77193945 ACATTCATATGGCCCATTGGGCCCAATCTCATTTATATGGCCAATCCGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAATCACATTTATATGGCCCATCAGCCCCAATTC
77194002 ACATT-ATAT
1 ACATTCATAT
77194011 TCATGCTCAC
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
56 22 0.21
57 32 0.31
58 49 0.48
ACGTcount: A:0.26, C:0.33, G:0.14, T:0.27
Consensus pattern (57 bp):
ACATTCATATGGCCCATCAGGCCCAATCACATTTATATGGCCCATCAGCCCCAATTC
Found at i:77194263 original size:16 final size:16
Alignment explanation
Indices: 77194222--77194264 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
77194212 GTAGCCAAAC
*
77194222 TTTCGACTTTTCGGCA
1 TTTCGACTTTTCGACA
*
77194238 TTTTGACTTTTCGACA
1 TTTCGACTTTTCGACA
*
77194254 TTTCGGCTTTT
1 TTTCGACTTTT
77194265 GCTGATCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.12, C:0.21, G:0.16, T:0.51
Consensus pattern (16 bp):
TTTCGACTTTTCGACA
Found at i:77196350 original size:27 final size:27
Alignment explanation
Indices: 77196320--77196497 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
77196310 ATATTGAGCC
* * *
77196320 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
77196347 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
77196374 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
77196402 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
77196429 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
77196456 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
77196483 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77196498 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:77196413 original size:55 final size:55
Alignment explanation
Indices: 77196320--77196497 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
77196310 ATATTGAGCC
* * *
77196320 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
77196374 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
77196429 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
77196483 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77196498 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:77196459 original size:82 final size:81
Alignment explanation
Indices: 77196341--77196496 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
77196331 TGCTATACAA
* * *
77196341 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
77196406 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
77196423 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
77196487 CACTTAGTGC
65 CACTTAGTGC
77196497 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:77203101 original size:43 final size:43
Alignment explanation
Indices: 77203053--77203168 Score: 171
Period size: 43 Copynumber: 2.7 Consensus size: 43
77203043 TATATGATCT
*
77203053 GAACTCATTGAGTTGGTCTGAGTTCATGATATATGTGCCA-TCC
1 GAACTCATTGAGTTGGTCTGAGTTCATGATACATGTGCCACT-C
* *
77203096 GAACTCATTGAGTTGGTCTAAGTTCATGATACATGTGCCACTT
1 GAACTCATTGAGTTGGTCTGAGTTCATGATACATGTGCCACTC
* *
77203139 GAGCTCATTGAGTTGATCTGAGTTCATGAT
1 GAACTCATTGAGTTGGTCTGAGTTCATGAT
77203169 GTACGTGACA
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
43 65 0.98
44 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (43 bp):
GAACTCATTGAGTTGGTCTGAGTTCATGATACATGTGCCACTC
Found at i:77210188 original size:43 final size:43
Alignment explanation
Indices: 77210140--77210255 Score: 162
Period size: 43 Copynumber: 2.7 Consensus size: 43
77210130 TATATGATCT
*
77210140 GAACTCATTGAGTTGGTCTGAGTTCATGATATATGTGCCA-TCC
1 GAACTCATTGAGTTGGTCTGAGTTCATGATACATGTGCCACT-C
* * *
77210183 GAACTCATTGAATTGGTTTGAGTTCATGATACATGTGCCACTT
1 GAACTCATTGAGTTGGTCTGAGTTCATGATACATGTGCCACTC
* *
77210226 GAGCTCATCGAGTTGGTCTGAGTTCATGAT
1 GAACTCATTGAGTTGGTCTGAGTTCATGAT
77210256 GTACGTGACG
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 63 0.98
44 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.35
Consensus pattern (43 bp):
GAACTCATTGAGTTGGTCTGAGTTCATGATACATGTGCCACTC
Found at i:77212668 original size:17 final size:18
Alignment explanation
Indices: 77212636--77212670 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
77212626 GGGCCGAAAG
77212636 GGGCCATATGGGCCCAAT
1 GGGCCATATGGGCCCAAT
*
77212654 GGGCC-TATTGGCCCAAT
1 GGGCCATATGGGCCCAAT
77212671 TGGATAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (18 bp):
GGGCCATATGGGCCCAAT
Found at i:77212919 original size:27 final size:27
Alignment explanation
Indices: 77212886--77213038 Score: 202
Period size: 27 Copynumber: 5.7 Consensus size: 27
77212876 AAAGTACTCC
* * *
77212886 CGATTTACAAAATTACCGTTTTACCTT
1 CGATTTACAGAATTACCATTTTACCCT
77212913 C-AGTTTACAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCATTTTACCCT
77212940 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
*
77212967 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCATTTTACCCT
** *
77212994 CGATTTATTGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCATTTTACCCT
*
77213021 CGATTTACAAAATTACCA
1 CGATTTACAGAATTACCA
77213039 AAATACCCCT
Statistics
Matches: 110, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
26 2 0.02
27 106 0.96
28 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACCATTTTACCCT
Found at i:77212927 original size:54 final size:54
Alignment explanation
Indices: 77212869--77213046 Score: 207
Period size: 54 Copynumber: 3.3 Consensus size: 54
77212859 TGACTTGTAA
* * *
77212869 AATTACCAAAGTACTCC-CGATTTACAAAATTACCGTTTTACCTTCAGTTTACAG
1 AATTACCAAATTAC-CCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
** *
77212923 AATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTACAG
1 AATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
* ** ** *
77212977 AATTACTATTTTACCCTCGATTTATTGAATTACCGTTTTACCCTC-GATTTACAA
1 AATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAG
*
77213031 AATTACCAAAATACCC
1 AATTACCAAATTACCC
77213047 CTGGTTTGTA
Statistics
Matches: 107, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 3 0.03
54 104 0.97
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (54 bp):
AATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
Found at i:77213059 original size:27 final size:27
Alignment explanation
Indices: 77213028--77213103 Score: 125
Period size: 27 Copynumber: 2.8 Consensus size: 27
77213018 CCTCGATTTA
77213028 CAAAATTACCAAAATACCCCTGGTTTG
1 CAAAATTACCAAAATACCCCTGGTTTG
* *
77213055 TAAAATTACCAAAATACCCATGGTTTG
1 CAAAATTACCAAAATACCCCTGGTTTG
*
77213082 CAAAATTACTAAAATACCCCTG
1 CAAAATTACCAAAATACCCCTG
77213104 TAGGGTAGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.26
Consensus pattern (27 bp):
CAAAATTACCAAAATACCCCTGGTTTG
Found at i:77215890 original size:40 final size:40
Alignment explanation
Indices: 77215846--77215940 Score: 154
Period size: 40 Copynumber: 2.4 Consensus size: 40
77215836 CTATACCATT
**
77215846 TCGCACACTTAGTGCTATTTATAGCTGAAGATATTTTGAA
1 TCGCACACTTAGTGCTATTTATAGCCAAAGATATTTTGAA
*
77215886 TCGCACACTTAGTGCTATTTATAGCCAAAGCTATTTTGAA
1 TCGCACACTTAGTGCTATTTATAGCCAAAGATATTTTGAA
*
77215926 TCACACACTTAGTGC
1 TCGCACACTTAGTGC
77215941 CAAATGCAGT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (40 bp):
TCGCACACTTAGTGCTATTTATAGCCAAAGATATTTTGAA
Done.