Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 236 of 325
Found at i:77216835 original size:20 final size:18
Alignment explanation
Indices: 77216800--77216842 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 18
77216790 ATATCAAGGT
77216800 CATAAATGTCATTAACCA
1 CATAAATGTCATTAACCA
*
77216818 TATAAATGTCATATTAACCA
1 CATAAATGTC--ATTAACCA
77216838 CATAA
1 CATAA
77216843 GGACCTCTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 9 0.43
20 12 0.57
ACGTcount: A:0.47, C:0.19, G:0.05, T:0.30
Consensus pattern (18 bp):
CATAAATGTCATTAACCA
Found at i:77220914 original size:48 final size:48
Alignment explanation
Indices: 77220804--77221083 Score: 280
Period size: 48 Copynumber: 5.9 Consensus size: 48
77220794 TGATACTAGG
* * ** *
77220804 GATATGTGAGCCAGTGTAAGACCATG-CTTGGAGCAT-GCATCAGTATT
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGA-CATGGCATCAGCCTC
* * *
77220851 TATACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
* * * * *
77220899 GATATGTGGGCTAGTGTAAGACCATATTTGGGACATGACATCAGCTTC
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
* * * * * *
77220947 GATATGTGAGCCAGTGTAAGACCATGT-TTGGAGCGTGACATC-GACATT
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGA-CATGGCATCAG-CCTC
* * * * *
77220995 TATACGAGAGCTAGTGTAAGACAATGTCTGGGACATGGCATCAACCTC
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
*
77221043 GATATGTGGGCTAGTGTAAGACCATGTCTGGGACATGGCAT
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
77221084 TGGCATCTTA
Statistics
Matches: 188, Mismatches: 39, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
47 30 0.16
48 154 0.82
49 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
Found at i:77221063 original size:144 final size:143
Alignment explanation
Indices: 77220804--77221079 Score: 464
Period size: 144 Copynumber: 1.9 Consensus size: 143
77220794 TGATACTAGG
*
77220804 GATATGTGAGCCAGTGTAAGACCATGCTTGGAGCATGCATCAGTATTTATACGAGAGCTAGTGTA
1 GATATGTGAGCCAGTGTAAGACCATGCTTGGAGCATGCATCAGCATTTATACGAGAGCTAGTGTA
* * *
77220869 AGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGGGCTAGTGTAAGACCATATTTGGGACA
66 AGACAATGTCTGGGACATGGCATCAACCTCGATATGTGGGCTAGTGTAAGACCATATCTGGGACA
77220934 TGACATCAGCTTC
131 TGACATCAGCTTC
* *
77220947 GATATGTGAGCCAGTGTAAGACCATGTTTGGAGCGTGACATC-GACATTTATACGAGAGCTAGTG
1 GATATGTGAGCCAGTGTAAGACCATGCTTGGAGCATG-CATCAG-CATTTATACGAGAGCTAGTG
*
77221011 TAAGACAATGTCTGGGACATGGCATCAACCTCGATATGTGGGCTAGTGTAAGACCATGTCTGGGA
64 TAAGACAATGTCTGGGACATGGCATCAACCTCGATATGTGGGCTAGTGTAAGACCATATCTGGGA
77221076 CATG
129 CATG
77221080 GCATTGGCAT
Statistics
Matches: 124, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
143 36 0.29
144 88 0.71
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (143 bp):
GATATGTGAGCCAGTGTAAGACCATGCTTGGAGCATGCATCAGCATTTATACGAGAGCTAGTGTA
AGACAATGTCTGGGACATGGCATCAACCTCGATATGTGGGCTAGTGTAAGACCATATCTGGGACA
TGACATCAGCTTC
Found at i:77225395 original size:22 final size:22
Alignment explanation
Indices: 77225368--77225412 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
77225358 TTCTTGCGTC
77225368 GTGTGTTCGTCATAATGTACCT
1 GTGTGTTCGTCATAATGTACCT
77225390 GTGTGTTCGTCATAATGTACCT
1 GTGTGTTCGTCATAATGTACCT
77225412 G
1 G
77225413 CAAAAGTACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.40
Consensus pattern (22 bp):
GTGTGTTCGTCATAATGTACCT
Found at i:77225993 original size:19 final size:19
Alignment explanation
Indices: 77225957--77226037 Score: 62
Period size: 19 Copynumber: 4.3 Consensus size: 19
77225947 AAATATGAGG
*
77225957 GAAGAAGGAAAG--GGAAA
1 GAAGGAGGAAAGAAGGAAA
77225974 GAAGGAGGAAAGAAGGAAA
1 GAAGGAGGAAAGAAGGAAA
* *
77225993 GAA-GAGGGAATGAAAGAAA
1 GAAGGA-GGAAAGAAGGAAA
*
77226012 -AAGAAAGGAAAGAAGAGAAAA
1 GAAG-GAGGAAAGAAG-G-AAA
77226033 GAAGG
1 GAAGG
77226038 GGAGAGCGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
17 11 0.22
18 4 0.08
19 26 0.53
20 2 0.04
21 3 0.06
22 3 0.06
ACGTcount: A:0.60, C:0.00, G:0.38, T:0.01
Consensus pattern (19 bp):
GAAGGAGGAAAGAAGGAAA
Found at i:77228842 original size:18 final size:18
Alignment explanation
Indices: 77228816--77228859 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
77228806 AAAATTTTTT
*
77228816 TGGTCATTTGTTCCCAAG
1 TGGTGATTTGTTCCCAAG
77228834 TGGTGATTTGTTCCCAAG
1 TGGTGATTTGTTCCCAAG
77228852 TGGTGATT
1 TGGTGATT
77228860 GACCCTCATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.27, T:0.41
Consensus pattern (18 bp):
TGGTGATTTGTTCCCAAG
Found at i:77231373 original size:40 final size:40
Alignment explanation
Indices: 77231284--77231394 Score: 125
Period size: 40 Copynumber: 2.8 Consensus size: 40
77231274 TAACTATTGA
* * * * **
77231284 ATGAAAGCACATACGTTCCCCTGTTTGAACTTTGGTACCC
1 ATGAATGCACATACGTGCCCCTATTTGTACTTCAGTACCC
77231324 ATGAATGCACATACGTGCCCCTATTTGTACTTCAGTAACCC
1 ATGAATGCACATACGTGCCCCTATTTGTACTTCAGT-ACCC
* * *
77231365 -TGAGTGCACTTACGTGCCCCTATTTATACT
1 ATGAATGCACATACGTGCCCCTATTTGTACT
77231395 CCGGTAACTT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 57 0.93
41 4 0.07
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.32
Consensus pattern (40 bp):
ATGAATGCACATACGTGCCCCTATTTGTACTTCAGTACCC
Found at i:77237315 original size:47 final size:47
Alignment explanation
Indices: 77237261--77237386 Score: 234
Period size: 47 Copynumber: 2.7 Consensus size: 47
77237251 GGATATTTGG
*
77237261 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAA
*
77237308 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAA
77237355 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
77237387 ACTTATGGAT
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 77 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAA
Found at i:77239756 original size:20 final size:21
Alignment explanation
Indices: 77239731--77239770 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
77239721 TTCTTGAAAC
77239731 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
* *
77239751 AGGGCAACATGCTCGTGTGG
1 AGGGCAACACGCCCGTGTGG
77239771 TCGTAACAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.20, C:0.25, G:0.40, T:0.15
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:77241049 original size:49 final size:50
Alignment explanation
Indices: 77240930--77241112 Score: 175
Period size: 49 Copynumber: 3.7 Consensus size: 50
77240920 TAGGGTATAA
* * *
77240930 TGCCGATGCCATGTCCCAAACATGGTCTTACAGTGGCTCATC-C--ATCCAG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCACAAAT-CAG
* *
77240979 T--CGATGTCATGTCCTAGACATGGTCTTACACTGACTATCA-AAATCAAG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATC-AG
* * ** *
77241027 -GCTGATGCGATGTCCCAGACATGGTCTTACACT-AGCTATCACGTATCCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCACAAATCAG
*
77241076 TGCCGATGCCATGTCCCAGACATAGTCTTACACTGAC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGAC
77241113 ACATCTCGTA
Statistics
Matches: 109, Mismatches: 15, Indels: 19
0.76 0.10 0.13
Matches are distributed among these distances:
46 3 0.03
47 31 0.28
48 5 0.05
49 35 0.32
50 34 0.31
51 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (50 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATCAG
Found at i:77241107 original size:99 final size:96
Alignment explanation
Indices: 77240934--77241112 Score: 236
Period size: 96 Copynumber: 1.8 Consensus size: 96
77240924 GTATAATGCC
* * * *
77240934 GATGCCATGTCCCAAACATGGTCTTACAGTGGCTCATCCATCCAGTCGATGTCATGTCCTAGACA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCCATCCAGTCGATGCCATGTCCCAGACA
*
77240999 TGGTCTTACACTGACTATCAAAATCAAGGCT
66 TAGTCTTACACTGACTATCAAAATCAAGGCT
* *
77241030 GATGCGATGTCCCAGACATGGTCTTACACTAGCT-ATCACGTATCC-GTGCCGATGCCATGTCCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCATC-C--ATCCAGT--CGATGCCATGTCCC
77241093 AGACATAGTCTTACACTGAC
61 AGACATAGTCTTACACTGAC
77241113 ACATCTCGTA
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
95 3 0.04
96 31 0.44
97 2 0.03
98 4 0.06
99 31 0.44
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (96 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCCATCCAGTCGATGCCATGTCCCAGACA
TAGTCTTACACTGACTATCAAAATCAAGGCT
Found at i:77241186 original size:46 final size:46
Alignment explanation
Indices: 77240980--77241248 Score: 156
Period size: 46 Copynumber: 5.7 Consensus size: 46
77240970 TCCATCCAGT
* * * * *
77240980 CGATGTCATGTCCTAGACATGGTCTTACACT-GACTATCAAAATCAAGGC
1 CGATG-CATGTCCCAGACAT-ATCTTACACTAG-CTCTCATAAT-GAGGC
* * * **
77241029 TGATGCGATGTCCCAGACATGGTCTTACACTAGCTATCACGT-ATCCGTGC
1 CGATGC-ATGTCCCAGACAT-ATCTTACACTAGCTCTCA--TAATGAG-GC
* * * *
77241079 CGATGCCATGTCCCAGACATAGTCTTACACT-G-ACACAT-CTCGTA-GT
1 CGATG-CATGTCCCAGACATA-TCTTACACTAGCTCTCATAAT-G-AGGC
* * *
77241125 CGATGCATGTCCCAGACATATCTTACACTGGCT-TACGTCATGAGGC
1 CGATGCATGTCCCAGACATATCTTACACTAGCTCT-CATAATGAGGC
* * * **
77241171 CGATGCATGTTCCAGACATTTCTTGCACTAGCTCTCATAATGTTGC
1 CGATGCATGTCCCAGACATATCTTACACTAGCTCTCATAATGAGGC
*
77241217 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATATCTTACACTAGC
77241249 GCACAAACAA
Statistics
Matches: 175, Mismatches: 30, Indels: 33
0.74 0.13 0.14
Matches are distributed among these distances:
44 9 0.05
45 17 0.10
46 77 0.44
47 2 0.01
48 3 0.02
49 35 0.20
50 31 0.18
51 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATATCTTACACTAGCTCTCATAATGAGGC
Found at i:77248768 original size:46 final size:46
Alignment explanation
Indices: 77248653--77248873 Score: 182
Period size: 46 Copynumber: 4.8 Consensus size: 46
77248643 CTATTAAAAT
* * * *
77248653 CGAGGCCGACGCCATGTCCCAGACATGGTCTTACATTGACACATC-T--
1 CGAGGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTC-TCGTCA
77248699 CGTA-GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCA
1 CG-AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCA
* * * *
77248745 CGAGGCCGATGCATGTCCTAGACATGTCTTGCACTAGCTCTCGTCT
1 CGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCA
* * ** * * * *
77248791 CAATGTTGATGCCATGTCTCAGGCATGGTCTTACACTGGCTCTCATAA
1 CGAGGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGTCA
* *
77248839 TGTGGCCGATGCATGTCCCAGACATGTCTTACACT
1 CGAGGCCGATGCATGTCCCAGACATGTCTTACACT
77248874 AGCACACAAG
Statistics
Matches: 138, Mismatches: 28, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 12 0.09
45 15 0.11
46 63 0.46
47 25 0.18
48 21 0.15
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.27
Consensus pattern (46 bp):
CGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCA
Found at i:77248831 original size:94 final size:92
Alignment explanation
Indices: 77248706--77248876 Score: 236
Period size: 94 Copynumber: 1.8 Consensus size: 92
77248696 TCTCGTAGCC
* * *
77248706 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCACGAGGCCGATGCATGTCCTAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAACGAGGCCGATGCATGTCCCAGACAT
*
77248770 GTCTTGCACTAGCTCTCGTCTCAATGTT
65 GTCTTACACTAGCTCTCGTCTCAATGTT
* * * *
77248798 GATGCCATGTCTCAGGCATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAACGAGGCCGATGCATGTCCCAGACA
77248863 TGTCTTACACTAGC
64 TGTCTTACACTAGC
77248877 ACACAAGTAA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 4 0.06
93 12 0.18
94 51 0.75
95 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAACGAGGCCGATGCATGTCCCAGACATG
TCTTACACTAGCTCTCGTCTCAATGTT
Found at i:77250292 original size:57 final size:57
Alignment explanation
Indices: 77250199--77250394 Score: 259
Period size: 57 Copynumber: 3.4 Consensus size: 57
77250189 ATCATATAAC
* *
77250199 AGGATTACCAGTCCAGGCTAAATCCTTTTTGGAATATATGCTCAGAAGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCTTTTTTGTAATATATGCTCAGAAGAGCTCAATT
*
77250256 AGGATTACCAGTCCAGGCTAAATCTTTTTTGTAATATATGCTTAGAAGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCTTTTTTGTAATATATGCTCAGAAGAGCTCAATT
* ** * * * * *
77250313 AGGATTACCAGTCTAGGCTAAATCTTAATTGTAACATATGCTC-GAGAGGGATTATATC
1 AGGATTACCAGTCCAGGCTAAATCTTTTTTGTAATATATGCTCAGA-AGAGCTCA-ATT
*
77250371 AGGATTACCAGTTCAGGCTAAATC
1 AGGATTACCAGTCCAGGCTAAATC
77250395 CCATCAGTAA
Statistics
Matches: 123, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
56 2 0.02
57 97 0.79
58 24 0.20
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCTTTTTTGTAATATATGCTCAGAAGAGCTCAATT
Found at i:77250845 original size:23 final size:24
Alignment explanation
Indices: 77250815--77250867 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
77250805 TCGGAAAATG
*
77250815 AAATTTAT-GCAATGTACA-CTATA
1 AAATTTATAGC-ATATACATCTATA
77250838 AAATTTATAGCATATACATTCTATA
1 AAATTTATAGCATATACA-TCTATA
77250863 AAATT
1 AAATT
77250868 CAGAATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 14 0.54
24 2 0.08
25 10 0.38
ACGTcount: A:0.45, C:0.11, G:0.06, T:0.38
Consensus pattern (24 bp):
AAATTTATAGCATATACATCTATA
Found at i:77263490 original size:15 final size:15
Alignment explanation
Indices: 77263470--77263514 Score: 81
Period size: 15 Copynumber: 3.0 Consensus size: 15
77263460 ATTATAAAAG
77263470 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
77263485 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
77263500 ATATGTTTTGCATTA
1 ATATGTTTTGGATTA
77263515 TGGTTTTTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.27, C:0.02, G:0.18, T:0.53
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:77271802 original size:20 final size:20
Alignment explanation
Indices: 77271764--77271799 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
77271754 AAAGCGTGTG
77271764 TAGTCTTATTTATATTTTAA
1 TAGTCTTATTTATATTTTAA
77271784 TAGT-TTATTTAT-TTTT
1 TAGTCTTATTTATATTTT
77271800 TTATCTCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.25
19 8 0.50
20 4 0.25
ACGTcount: A:0.25, C:0.03, G:0.06, T:0.67
Consensus pattern (20 bp):
TAGTCTTATTTATATTTTAA
Found at i:77273953 original size:17 final size:17
Alignment explanation
Indices: 77273933--77273976 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
77273923 TATTACTTTA
77273933 ATTTTTTATTTTATTTT
1 ATTTTTTATTTTATTTT
* *
77273950 ATTTATTAATTTATTTT
1 ATTTTTTATTTTATTTT
* *
77273967 CTTTTATATT
1 ATTTTTTATT
77273977 ATACTGCATA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (17 bp):
ATTTTTTATTTTATTTT
Found at i:77273954 original size:22 final size:21
Alignment explanation
Indices: 77273907--77273973 Score: 55
Period size: 22 Copynumber: 2.9 Consensus size: 21
77273897 TTTGTTCTAA
77273907 AATTTGTTTCATTTTTTATTACTTT
1 AATTT-TTT-ATTTTTT-TTA-TTT
77273932 AATTTTTTATTTTATTTTATTT
1 AATTTTTTATTTT-TTTTATTT
*
77273954 -ATTAATTTATTTTCTTTTAT
1 AATT-TTTTATTTT-TTTTAT
77273974 ATTATACTGC
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
21 3 0.08
22 17 0.45
23 8 0.21
24 5 0.13
25 5 0.13
ACGTcount: A:0.22, C:0.04, G:0.01, T:0.72
Consensus pattern (21 bp):
AATTTTTTATTTTTTTTATTT
Found at i:77283277 original size:46 final size:46
Alignment explanation
Indices: 77283222--77283380 Score: 160
Period size: 46 Copynumber: 3.4 Consensus size: 46
77283212 ACATCTCATA
* *
77283222 GCCGGTGCATGTCCTAGACACGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTCT-CATCTCGAG
* ** * *
77283268 GCCGATGCATGTCCCAAACATTTCTTACACTGGCTCTCATCTCAAT
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTCTCATCTCGAG
* * * * *
77283314 GTCGATTCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGA-TGCATGTCCCAGACA-CGTCTTACACTGGCTCTCAT-CTCGAG
77283362 GCCGATGCATGTCCCAGAC
1 GCCGATGCATGTCCCAGAC
77283381 TATAACATCC
Statistics
Matches: 91, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
46 41 0.45
47 27 0.30
48 22 0.24
49 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTCTCATCTCGAG
Found at i:77284770 original size:100 final size:100
Alignment explanation
Indices: 77284591--77284772 Score: 303
Period size: 100 Copynumber: 1.8 Consensus size: 100
77284581 TATTGTGAGG
* *
77284591 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGTATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGTATAATTGGTCGCATGTGTAGTACT
*
77284656 AAGTGCAGGCTACTATGCATACCCGATAACTTCGA
66 AAGTGCAGGATACTATGCATACCCGATAACTTCGA
*
77284691 TCACGTGTGTAGTATTAAGTGCAGGCTACTACATGTACCAG-ATAATTGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACC-GTATAATTGGTCGCATGTGTAGTAC
*
77284755 TAAGTGCGGGATACTATG
65 TAAGTGCAGGATACTATG
77284773 AGTACCAGAT
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
100 75 0.99
101 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGTATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGATACTATGCATACCCGATAACTTCGA
Found at i:77284778 original size:49 final size:49
Alignment explanation
Indices: 77284596--77284783 Score: 211
Period size: 49 Copynumber: 3.8 Consensus size: 49
77284586 TGAGGTCACG
* * *
77284596 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACC-GTATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGAGTACCAG-ATAATTGGTCGCA
* * * *
77284645 TGTGTAGTACTAAGTGCAGGCTACTATGCA-TACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATG-AGTACCAGATAA-TT-GGTCGCA
* *
77284696 TGTGTAGTATTAAGTGCAGGCTACTA-CATGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGA-GTACCAGATAATTGGTCGCA
* *
77284745 TGTGTAGTACTAAGTGCGGGATACTATGAGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGAGTACCAGATA
77284784 GCTTTGGCTA
Statistics
Matches: 116, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
49 72 0.62
50 6 0.05
51 38 0.33
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGAGTACCAGATAATTGGTCGCA
Found at i:77284813 original size:100 final size:100
Alignment explanation
Indices: 77284606--77284816 Score: 248
Period size: 100 Copynumber: 2.1 Consensus size: 100
77284596 TGTGTAGTAC
* * *
77284606 TAAGTGTAGGCTACTACGTGTACCGTATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TAAGTGCAGGCTACTACATGTACCGTATAATTGGTCGCATGTGTAGTACTAAGTGCAGGATACTA
* ** ** *
77284671 TGCATACCCGATAACTTCGATCACGTGTGTAGTAT
66 TGCATACCAGATAACTTCGATCACAAGTGTAAAAA
*
77284706 TAAGTGCAGGCTACTACATGTACCAG-ATAATTGGTCGCATGTGTAGTACTAAGTGCGGGATACT
1 TAAGTGCAGGCTACTACATGTACC-GTATAATTGGTCGCATGTGTAGTACTAAGTGCAGGATACT
* * *
77284770 ATG-AGTACCAGATAGCTTTG-GCTACAAGTGTAAAAA
65 ATGCA-TACCAGATAACTTCGATC-ACAAGTGTAAAAA
*
77284806 TATGTGCAGGC
1 TAAGTGCAGGC
77284817 AACTGAGTAT
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
99 2 0.02
100 91 0.97
101 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (100 bp):
TAAGTGCAGGCTACTACATGTACCGTATAATTGGTCGCATGTGTAGTACTAAGTGCAGGATACTA
TGCATACCAGATAACTTCGATCACAAGTGTAAAAA
Found at i:77300234 original size:36 final size:36
Alignment explanation
Indices: 77300187--77300257 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
77300177 GAATTCGAAG
*
77300187 ATGTCTCTTTTCATGCCCTTCCACCAGTACATTTTT
1 ATGTCTCTTTTCATGCCCTTCCACAAGTACATTTTT
77300223 ATGTCTCTTTTCATGCCCTTCCACAAGTACATTTT
1 ATGTCTCTTTTCATGCCCTTCCACAAGTACATTTT
77300258 CTTTAAATCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.18, C:0.30, G:0.08, T:0.44
Consensus pattern (36 bp):
ATGTCTCTTTTCATGCCCTTCCACAAGTACATTTTT
Found at i:77309261 original size:21 final size:21
Alignment explanation
Indices: 77309235--77309277 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
77309225 GCTCATTTCT
77309235 CGTTCCATTCACTCTCCTATG
1 CGTTCCATTCACTCTCCTATG
77309256 CGTTCCATTCACTCTCCTATG
1 CGTTCCATTCACTCTCCTATG
77309277 C
1 C
77309278 TCTCCTAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.40, G:0.09, T:0.37
Consensus pattern (21 bp):
CGTTCCATTCACTCTCCTATG
Found at i:77310486 original size:21 final size:21
Alignment explanation
Indices: 77310460--77310502 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
77310450 ACAACCTAAG
77310460 ATTTTAAATTCTTAAAAATCA
1 ATTTTAAATTCTTAAAAATCA
77310481 ATTTTAAATTCTTAAAAATCA
1 ATTTTAAATTCTTAAAAATCA
77310502 A
1 A
77310503 CTTATCATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (21 bp):
ATTTTAAATTCTTAAAAATCA
Found at i:77313196 original size:40 final size:39
Alignment explanation
Indices: 77313152--77313338 Score: 205
Period size: 40 Copynumber: 4.7 Consensus size: 39
77313142 AGATATAGCT
* * *
77313152 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
* * *
77313192 ACTCGCACAATTGCCTTTGGGACTTAGCCCGAATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG-GTTTAGTA
77313232 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
* ** *
77313272 ACTTGCACAAATGCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
* * * *
77313311 ACTAGCGCAGATGGCTTCGGGACTTAGC
1 ACTCGCACAAATGCCTTCGGGACTTAGC
77313339 TCGATTATCA
Statistics
Matches: 127, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 32 0.25
40 93 0.73
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:77321285 original size:40 final size:39
Alignment explanation
Indices: 77321241--77321431 Score: 206
Period size: 40 Copynumber: 4.9 Consensus size: 39
77321231 GGATATAGCT
* * *
77321241 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
* * **
77321281 ACTCGCACAATTGCCTTTGGGACTTAGCCCAAATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTTAGTA
77321321 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
* *** *
77321361 ACTTGCACAAATGCCTTCGGGACTT-GCCCGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
* * *
77321399 ACTAGCGCAGATG-CTTCGGGACTTAGCCCGGTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
77321432 ATCATCCAAA
Statistics
Matches: 126, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
37 11 0.09
38 19 0.15
39 5 0.04
40 89 0.71
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:77321376 original size:80 final size:78
Alignment explanation
Indices: 77321241--77321432 Score: 235
Period size: 80 Copynumber: 2.4 Consensus size: 78
77321231 GGATATAGCT
* * * *
77321241 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTAACTCGCACAATTGCCTTTGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAGAGTAACTCGCACAAATGCCTTCGGGACTT
*
77321306 AGCCCAAATTTAGTA
66 -GCCCAAA-CTAGTA
* *
77321321 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTAGAGTAACTCGCACAAATGCCTTCGGGACT
* *
77321385 TGCCCGAACTAGTC
65 TGCCCAAACTAGTA
* * *
77321399 ACTAGCGCAGATG-CTTCGGGACTTAGCCCGGTTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA
77321433 TCATCCAAAT
Statistics
Matches: 98, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
76 2 0.02
77 18 0.18
78 14 0.14
79 6 0.06
80 56 0.57
81 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (78 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAGAGTAACTCGCACAAATGCCTTCGGGACTT
GCCCAAACTAGTA
Found at i:77323989 original size:13 final size:13
Alignment explanation
Indices: 77323971--77323995 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77323961 TGTGGGTGCA
77323971 CACGGCCGTGTCG
1 CACGGCCGTGTCG
77323984 CACGGCCGTGTC
1 CACGGCCGTGTC
77323996 TGGTATTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.36, T:0.16
Consensus pattern (13 bp):
CACGGCCGTGTCG
Found at i:77331754 original size:37 final size:37
Alignment explanation
Indices: 77331704--77331777 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
77331694 AGCTCGTAAC
77331704 TTACCACCAAAATATATAAAATAGAGTAACAAAAACA
1 TTACCACCAAAATATATAAAATAGAGTAACAAAAACA
77331741 TTACCACCAAAATATATAAAATAGAGTAACAAAAACA
1 TTACCACCAAAATATATAAAATAGAGTAACAAAAACA
77331778 CACACAGAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.59, C:0.16, G:0.05, T:0.19
Consensus pattern (37 bp):
TTACCACCAAAATATATAAAATAGAGTAACAAAAACA
Found at i:77332013 original size:35 final size:35
Alignment explanation
Indices: 77331974--77332097 Score: 153
Period size: 35 Copynumber: 3.5 Consensus size: 35
77331964 TATGTACATG
*
77331974 CAATATAA-CTTCACATATAACCGAATATACAAGTT
1 CAATATAAGC-TCACATGTAACCGAATATACAAGTT
* *
77332009 CAATATAAGCTCACATGTAATCAAATACT-CAAGTT
1 CAATATAAGCTCACATGTAACCGAATA-TACAAGTT
* * * *
77332044 TAATATAACCTCACATGCAGCCGAATATACAAGTT
1 CAATATAAGCTCACATGTAACCGAATATACAAGTT
77332079 CAATATAAGCTCACATGTA
1 CAATATAAGCTCACATGTA
77332098 CTTACCTATG
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
34 1 0.01
35 71 0.96
36 2 0.03
ACGTcount: A:0.43, C:0.21, G:0.09, T:0.27
Consensus pattern (35 bp):
CAATATAAGCTCACATGTAACCGAATATACAAGTT
Found at i:77338180 original size:39 final size:39
Alignment explanation
Indices: 77338122--77338339 Score: 321
Period size: 39 Copynumber: 5.5 Consensus size: 39
77338112 TAATGGAGAA
77338122 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
77338161 TTATATCCGGGCTAGGTCCCGAAGGCATTCGTGCTGGTT
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
77338200 TTATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
77338239 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
77338278 TTATATCCGGGCTAAAGTCCCGCAGGCTTTC-TGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
*
77338317 TTATATTCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
77338340 CATGCTTTGT
Statistics
Matches: 163, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 138 0.85
40 25 0.15
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:77338328 original size:117 final size:118
Alignment explanation
Indices: 77338122--77338356 Score: 359
Period size: 117 Copynumber: 2.0 Consensus size: 118
77338112 TAATGGAGAA
*
77338122 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGC
*
77338187 ATTCGTGCTGGTTTTATATTCGGGC-T-AAGTCCCGAAGGCATTTGTGCTGGTG
66 ATTCGTGCTGGTATTATATTCGGGCTTAAAGTCCCGAAGGC-TTTGTGCTGGTG
* *
77338239 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTGGTGTTATATCCGGGCTAAAGTCCCGCAGG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCT-AAGTCCCGAAGG
* * * *
77338304 CTTTC-TGCTGGTATTATATTCGGGCTTAAAGTCCCGCATGCTTTGTGGTGGTG
65 CATTCGTGCTGGTATTATATTCGGGCTTAAAGTCCCGAAGGCTTTGTGCTGGTG
77338357 ATTGGATTTG
Statistics
Matches: 107, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
117 70 0.65
118 26 0.24
119 11 0.10
ACGTcount: A:0.17, C:0.21, G:0.30, T:0.32
Consensus pattern (118 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGC
ATTCGTGCTGGTATTATATTCGGGCTTAAAGTCCCGAAGGCTTTGTGCTGGTG
Found at i:77344675 original size:39 final size:39
Alignment explanation
Indices: 77344621--77344783 Score: 214
Period size: 39 Copynumber: 4.3 Consensus size: 39
77344611 TAATGGAGAA
77344621 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
77344660 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
77344699 CTATATCCGGGCTAA-----G-AGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
77344732 TTATATCCGGGCTAAAGTCCTGCAGGC-TTTGGGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
77344771 TTATATCCGGGCT
1 TTATATCCGGGCT
77344784 TAAAGTCGCG
Statistics
Matches: 112, Mismatches: 5, Indels: 14
0.85 0.04 0.11
Matches are distributed among these distances:
33 29 0.26
34 3 0.03
39 76 0.68
40 4 0.04
ACGTcount: A:0.18, C:0.22, G:0.31, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:77344729 original size:72 final size:72
Alignment explanation
Indices: 77344643--77344783 Score: 212
Period size: 72 Copynumber: 2.0 Consensus size: 72
77344633 TAAGTCCCGA
* *
77344643 AGGCATTCGTGCTGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGCTATATCC
1 AGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGC-TTCGGGCTGGTACTATATCC
77344707 GGGCTAAG
65 GGGCTAAG
* * * *
77344715 AGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCTGCAGGCTTTGGGCTGGTATTATATCCG
1 AGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGCTTCGGGCTGGTACTATATCCG
77344780 GGCT
66 GGCT
77344784 TAAAGTCGCG
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
72 51 0.82
73 11 0.18
ACGTcount: A:0.17, C:0.21, G:0.32, T:0.30
Consensus pattern (72 bp):
AGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGCTTCGGGCTGGTACTATATCCG
GGCTAAG
Found at i:77348607 original size:40 final size:40
Alignment explanation
Indices: 77348530--77348747 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
77348520 AAACCAAGTA
* *
77348530 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
77348569 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
77348609 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77348649 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
77348689 CCTTCGGGACTTAGCCTGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
77348729 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77348748 TTATCATCCA
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 15 0.09
40 149 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77356835 original size:40 final size:40
Alignment explanation
Indices: 77356758--77356933 Score: 241
Period size: 40 Copynumber: 4.4 Consensus size: 40
77356748 AAACCAAGTA
* *
77356758 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
77356797 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
77356837 CCTTCGAGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** *
77356877 CCTTCGGGACTTAGCCCGGA-ATTAGTCGCTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
77356917 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
77356934 AGTTATCATC
Statistics
Matches: 123, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 15 0.12
40 108 0.88
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77359533 original size:43 final size:43
Alignment explanation
Indices: 77359413--77359571 Score: 175
Period size: 43 Copynumber: 3.7 Consensus size: 43
77359403 AGCTCGTACA
* * *
77359413 ATGCCAATGTCCTAGACGTGGTCTTACATGTAAA-CAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAAATAT-G
* *
77359456 ATGCC-ACTGTTCCAGATAG-GGTCTTACACG-AAATCAAATATG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGTAAATCAAATATG
* *
77359498 ATGCCAACGTCCCAGGCGTGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCA-AA-TATG
77359542 ATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
77359572 AGAACACATA
Statistics
Matches: 98, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 36 0.37
44 33 0.34
45 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAAATATG
Found at i:77359570 original size:86 final size:85
Alignment explanation
Indices: 77359413--77359572 Score: 200
Period size: 85 Copynumber: 1.9 Consensus size: 85
77359403 AGCTCGTACA
* * * *
77359413 ATGCCAATGTCCTAGACGTGGTCTTACATGTAAACAAATATCGATGCCACTGTTCCAGATAGGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACAAATATCGATGCCACTGTCCCAGATAGGGT
77359478 CTTACACGAAATCAAATATG
66 CTTACACGAAATCAAATATG
* * *
77359498 ATGCCAACGTCCCAGGCGTGGTCTTACACGTAAATCATAA-GTCGATGCCAAC-GTCCCAGA-CG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAA-CA-AATATCGATGCC-ACTGTCCCAGATAG
77359560 TGGTCTTACACGA
63 -GGTCTTACACGA
77359573 GAACACATAT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 31 0.48
86 29 0.45
87 4 0.06
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACAAATATCGATGCCACTGTCCCAGATAGGGT
CTTACACGAAATCAAATATG
Found at i:77365356 original size:93 final size:93
Alignment explanation
Indices: 77365249--77365419 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
77365239 GCCCTTAAGT
* * *
77365249 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGTACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77365314 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
77365342 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77365407 CGAGTTCGGATGC
66 CGAGTTCGGATGC
77365420 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77365416 original size:46 final size:46
Alignment explanation
Indices: 77365244--77365416 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
77365234 AACCTGCCCT
* * * *
77365244 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
77365290 TAAGTGAACTCGTACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
77365338 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
77365383 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
77365417 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:77371204 original size:93 final size:93
Alignment explanation
Indices: 77371097--77371267 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
77371087 CGCCCTAAGT
* *
77371097 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77371162 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
77371190 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
77371255 CGAGTTCGGATGC
66 CGAGTTCGGATGC
77371268 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77371264 original size:46 final size:46
Alignment explanation
Indices: 77371092--77371264 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
77371082 TAACCCGCCC
* * * *
77371092 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
77371138 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
77371186 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
77371231 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
77371265 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:77371721 original size:30 final size:30
Alignment explanation
Indices: 77371687--77371746 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
77371677 ATTTAATACG
*
77371687 AACTTTGGAAAAATTATACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
77371717 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
77371747 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:77388562 original size:27 final size:27
Alignment explanation
Indices: 77388532--77388709 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77388522 ATATTGAGTC
* * * *
77388532 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
77388559 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77388586 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
77388614 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
77388641 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
77388668 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77388695 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77388710 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:77388671 original size:82 final size:81
Alignment explanation
Indices: 77388553--77388708 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77388543 TGCTATATAA
* *
77388553 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
77388618 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
77388635 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
77388699 CACTTAGTGC
65 CACTTAGTGC
77388709 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:77396823 original size:27 final size:27
Alignment explanation
Indices: 77396793--77396970 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77396783 ATATTGAGTC
* * * *
77396793 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
77396820 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77396847 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
77396875 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
77396902 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
77396929 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
77396956 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77396971 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:77396932 original size:82 final size:81
Alignment explanation
Indices: 77396814--77396969 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77396804 TGCTATATAA
* *
77396814 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
77396879 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
77396896 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
77396960 CACTTAGTGC
65 CACTTAGTGC
77396970 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:77410313 original size:40 final size:40
Alignment explanation
Indices: 77410258--77410337 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
77410248 TGGTTATAAG
77410258 ATAAAATTTATATTCTTAGACTCCTTAATGAGTCTAGTTT
1 ATAAAATTTATATTCTTAGACTCCTTAATGAGTCTAGTTT
77410298 ATAAAATTTATATTCTTAGACTCCTTAATGAGTCTAGTTT
1 ATAAAATTTATATTCTTAGACTCCTTAATGAGTCTAGTTT
77410338 CAAATGAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (40 bp):
ATAAAATTTATATTCTTAGACTCCTTAATGAGTCTAGTTT
Found at i:77414831 original size:40 final size:40
Alignment explanation
Indices: 77414754--77414971 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
77414744 AAACCAAGTA
* *
77414754 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
77414793 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77414833 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
77414873 CCTTCGGGACTTAACCAGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
77414913 CCTTCGGGGCTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
77414953 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77414972 TTATCATCCG
Statistics
Matches: 160, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
39 17 0.11
40 142 0.89
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77418366 original size:55 final size:55
Alignment explanation
Indices: 77418268--77418378 Score: 129
Period size: 55 Copynumber: 2.0 Consensus size: 55
77418258 TGAGCCTGCC
*
77418268 AAAACAACACGGGCGTACGACACGCCCGTGTGGAAGAACCGTGGGT-GAACCTGTT
1 AAAACAACACGGGCGTACGACACGCCCGTGTGCAAGAACCGT-GGTCGAACCTGTT
* * * *
77418323 AAAACAGCACGGGTGTGA-GACACGCCCGTGT-CTAGCACTCGTGGTCGAACCTGTT
1 AAAACAACACGGGCGT-ACGACACGCCCGTGTGCAAGAAC-CGTGGTCGAACCTGTT
77418378 A
1 A
77418379 GATTGACACG
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
54 7 0.15
55 40 0.83
56 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.30, T:0.17
Consensus pattern (55 bp):
AAAACAACACGGGCGTACGACACGCCCGTGTGCAAGAACCGTGGTCGAACCTGTT
Found at i:77424440 original size:49 final size:49
Alignment explanation
Indices: 77424365--77424676 Score: 455
Period size: 49 Copynumber: 6.6 Consensus size: 49
77424355 TATCTGAATA
* *
77424365 AATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
77424412 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
77424461 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
77424510 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
77424559 AATGTGAAAGTG----TATATGTGATAAGGCCTAATGGTCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
77424604 AATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
77424651 GATGTGAAAGTGTATA-A-ATGTGATAA
1 AATGTGAAAGTGTATATATATGTGATAA
77424677 CTCCCGAAGG
Statistics
Matches: 246, Mismatches: 13, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
45 44 0.18
47 55 0.22
48 1 0.00
49 146 0.59
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:77424602 original size:22 final size:22
Alignment explanation
Indices: 77424529--77424602 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
77424519 GTGTATATAT
*
77424529 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGTCG
* * **
77424551 ATGTGATGAATG--TGAAAGTGTAT
1 ATGTGAT-AAGGCCT-AATG-GTCG
77424574 ATGTGATAAGGCCTAATGGTCG
1 ATGTGATAAGGCCTAATGGTCG
77424596 ATGTGAT
1 ATGTGAT
77424603 GAATGTGAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 10
0.67 0.16 0.18
Matches are distributed among these distances:
21 1 0.03
22 22 0.58
23 14 0.37
24 1 0.03
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.30
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGTCG
Found at i:77424934 original size:37 final size:37
Alignment explanation
Indices: 77424796--77424933 Score: 249
Period size: 37 Copynumber: 3.7 Consensus size: 37
77424786 CCGAGCTCTA
77424796 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
77424833 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
77424870 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
77424907 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
77424934 TCGTCTGAGC
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:77426526 original size:40 final size:40
Alignment explanation
Indices: 77426203--77426514 Score: 525
Period size: 40 Copynumber: 7.8 Consensus size: 40
77426193 GAGAATTAAG
*
77426203 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
77426243 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
77426283 AGTGATGTATCCAGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
77426323 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
77426363 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
77426403 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
77426443 AGTGATGTATCCGGGCTAAGTTCCGAAAAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
77426483 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
77426515 ATCATGATGG
Statistics
Matches: 257, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 257 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:77430398 original size:49 final size:49
Alignment explanation
Indices: 77430323--77430635 Score: 439
Period size: 49 Copynumber: 6.6 Consensus size: 49
77430313 ATATTGAATA
* *
77430323 AATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
77430370 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
77430419 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
77430468 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
77430517 AATGTGAAAGTG----TATATGTGATAAGGCCTAATGGTCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
77430562 AATGTCAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
77430609 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
77430636 TCCCGAAGGG
Statistics
Matches: 243, Mismatches: 17, Indels: 12
0.89 0.06 0.04
Matches are distributed among these distances:
45 42 0.17
47 55 0.23
48 1 0.00
49 145 0.60
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:77430560 original size:22 final size:22
Alignment explanation
Indices: 77430487--77430560 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
77430477 GTGTATATAT
*
77430487 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGTCG
* * **
77430509 ATGTGATAAATG--TGAAAGTGTAT
1 ATGTGAT-AAGGCCT-AATG-GTCG
77430532 ATGTGATAAGGCCTAATGGTCG
1 ATGTGATAAGGCCTAATGGTCG
77430554 ATGTGAT
1 ATGTGAT
77430561 GAATGTCAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 10
0.67 0.16 0.18
Matches are distributed among these distances:
21 1 0.03
22 22 0.58
23 14 0.37
24 1 0.03
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGTCG
Found at i:77430892 original size:37 final size:37
Alignment explanation
Indices: 77430754--77430891 Score: 249
Period size: 37 Copynumber: 3.7 Consensus size: 37
77430744 CCGAGCTCTA
77430754 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
77430791 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
77430828 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
77430865 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
77430892 TCGTCTGAGC
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:77432205 original size:40 final size:40
Alignment explanation
Indices: 77432161--77432313 Score: 272
Period size: 40 Copynumber: 3.8 Consensus size: 40
77432151 GAGAATTAAG
77432161 AGTGATGTATCCGGGCTAAGT-TCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCT-CGAAGAGCATTCGTGCT
77432201 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
77432241 AGTGATGTATCCAGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
77432281 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
77432314 CCGGGCTAAG
Statistics
Matches: 109, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
40 108 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
Found at i:77432319 original size:23 final size:23
Alignment explanation
Indices: 77432289--77432376 Score: 98
Period size: 23 Copynumber: 4.1 Consensus size: 23
77432279 CTAGTGATGT
77432289 ATCCGGGCTAAGTCCCGAAGAGC
1 ATCCGGGCTAAGTCCCGAAGAGC
77432312 ATCCGGGCTAAGTCCCGAAGAGC
1 ATCCGGGCTAAGTCCCGAAGAGC
* * * *
77432335 ATTCGTGCT-AGT---G-A-TGT
1 ATCCGGGCTAAGTCCCGAAGAGC
77432352 ATCCGGGCTAAGTCCCGAAGAGC
1 ATCCGGGCTAAGTCCCGAAGAGC
77432375 AT
1 AT
77432377 TCGTGCTAGT
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
17 8 0.16
18 4 0.08
19 1 0.02
21 1 0.02
22 4 0.08
23 33 0.65
ACGTcount: A:0.25, C:0.26, G:0.30, T:0.19
Consensus pattern (23 bp):
ATCCGGGCTAAGTCCCGAAGAGC
Found at i:77432332 original size:103 final size:103
Alignment explanation
Indices: 77432209--77432416 Score: 371
Period size: 103 Copynumber: 2.0 Consensus size: 103
77432199 CTAGTGATGT
* *
77432209 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCTCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCCCGAAGAGCAT
*
77432274 TCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGC
66 TCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAAAGC
*
77432312 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCCCGAAGAGCAT
*
77432377 TCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGC
66 TCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAAAGC
77432415 AT
1 AT
77432417 TCGTGCTGGT
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 100 1.00
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (103 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCCCGAAGAGCAT
TCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAAAGC
Found at i:77432353 original size:63 final size:63
Alignment explanation
Indices: 77432249--77432376 Score: 238
Period size: 63 Copynumber: 2.0 Consensus size: 63
77432239 CTAGTGATGT
*
77432249 ATCCAGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGC
1 ATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGC
*
77432312 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGC
1 ATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGC
77432375 AT
1 AT
77432377 TCGTGCTAGT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (63 bp):
ATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGC
Found at i:77432435 original size:143 final size:143
Alignment explanation
Indices: 77432169--77432455 Score: 486
Period size: 143 Copynumber: 2.0 Consensus size: 143
77432159 AGAGTGATGT
* *
77432169 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
* *
77432234 TCGTGCTAGTGATGTATCCAGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTA
66 TCGTGCTAGTGATGTATCCAGGCTAAGTCTCGAAAAGCATTCGTGCTAGTGATATATCCGGGCTA
77432299 AGTCCCGAAGAGC
131 AGTCCCGAAGAGC
77432312 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
* * *
77432377 TCGTGCTAGTGATGTATCCGGGCTAAGT-TCCGAAAAGCATTCGTGCTGGTGTTATATCCGGGCT
66 TCGTGCTAGTGATGTATCCAGGCTAAGTCT-CGAAAAGCATTCGTGCTAGTGATATATCCGGGCT
*
77432441 AGGTCCCGAAGAGC
130 AAGTCCCGAAGAGC
77432455 A
1 A
77432456 ATCATGATGG
Statistics
Matches: 135, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
142 1 0.01
143 134 0.99
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (143 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
TCGTGCTAGTGATGTATCCAGGCTAAGTCTCGAAAAGCATTCGTGCTAGTGATATATCCGGGCTA
AGTCCCGAAGAGC
Found at i:77432467 original size:40 final size:40
Alignment explanation
Indices: 77432312--77432455 Score: 234
Period size: 40 Copynumber: 3.6 Consensus size: 40
77432302 CCCGAAGAGC
77432312 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
77432352 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
* * * * *
77432392 ATCCGGGCTAAGTTCCGAAAAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
*
77432432 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAGTCCCGAAGAGCA
77432456 ATCATGATGG
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 96 1.00
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
Found at i:77436361 original size:49 final size:49
Alignment explanation
Indices: 77436286--77436598 Score: 466
Period size: 49 Copynumber: 6.6 Consensus size: 49
77436276 TATTTGAATA
* *
77436286 AATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
77436333 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
77436382 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
77436431 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
77436480 AATGTGAAAGTG----TATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
77436525 AATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
77436572 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
77436599 TCCTGAAGGG
Statistics
Matches: 249, Mismatches: 11, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
45 45 0.18
47 57 0.23
48 1 0.00
49 146 0.59
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:77436478 original size:22 final size:22
Alignment explanation
Indices: 77436450--77436523 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
77436440 GTGTATATAT
77436450 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* * ***
77436472 ATGTGATGAATG--TGAAAGTGTAT
1 ATGTGAT-AAGGCCT-AATG-GCCG
77436495 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
77436517 ATGTGAT
1 ATGTGAT
77436524 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:77436767 original size:37 final size:37
Alignment explanation
Indices: 77436717--77436859 Score: 241
Period size: 37 Copynumber: 3.9 Consensus size: 37
77436707 CCGAGCTCTA
77436717 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
77436754 AAGACCCGATGACTACGTGTGGGGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
77436791 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* * *
77436828 AAGACCCGATAACTTCGTGTGGAGATTTTGTC
1 AAGACCCGATGACTACGTGTGGAGATTATGTC
77436860 TGAGCTAAAG
Statistics
Matches: 101, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:77449030 original size:27 final size:27
Alignment explanation
Indices: 77448976--77449031 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
77448966 ATCTCATATC
* **
77448976 TGTAGGGTAGAAGTACTGAAATGTCCT
1 TGTAGGGTAGAAGTACTAAAATACCCT
*
77449003 TGTAGGGTAGAATTACTAAAATACCCT
1 TGTAGGGTAGAAGTACTAAAATACCCT
77449030 TG
1 TG
77449032 GTTTACAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.30
Consensus pattern (27 bp):
TGTAGGGTAGAAGTACTAAAATACCCT
Found at i:77449043 original size:27 final size:27
Alignment explanation
Indices: 77449013--77449327 Score: 240
Period size: 27 Copynumber: 11.7 Consensus size: 27
77449003 TGTAGGGTAG
* * *
77449013 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGATTTATAA
** * *
77449040 AATTA-CTGAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGATTTATAA
* *
77449066 AATTACCAAAATACCCTCGA-TTAGAA
1 AATTACCAAAATACCCTTGATTTATAA
* * * *
77449092 AATTACAAAAATACCCATGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTATAA
* * * *
77449119 AATTACCAAATTACCCCTGATTTGTGA
1 AATTACCAAAATACCCTTGATTTATAA
* * * *
77449146 AATTACCAAAAAACCCTTAACTTGTAA
1 AATTACCAAAATACCCTTGATTTATAA
* * *
77449173 AATTACCAAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGATTTATAA
* *
77449200 AATTACCGAAATACCCTCGATTTATAA
1 AATTACCAAAATACCCTTGATTTATAA
** * **
77449227 AATTATAAAAATACCCTTGATCTGGAA
1 AATTACCAAAATACCCTTGATTTATAA
* * *
77449254 AATTACAAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCTTGATTTATAA
* * *
77449281 AATTACAAAAAATACCCTT-AGTTTGTAG
1 AATTAC-CAAAATACCCTTGA-TTTATAA
* *
77449309 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
77449328 TAGGGTGAAA
Statistics
Matches: 233, Mismatches: 50, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
26 44 0.19
27 169 0.73
28 20 0.09
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTATAA
Found at i:77449610 original size:41 final size:41
Alignment explanation
Indices: 77449565--77449683 Score: 116
Period size: 41 Copynumber: 2.9 Consensus size: 41
77449555 GGAGGAAGAA
*
77449565 ATTGAAGATCACATTGTTGCTT-ACCAACCGTGGATCCACCG
1 ATTGAAGATCACATAGTTGCTTGA-CAACCGTGGATCCACCG
* ** * **
77449606 ATTGAGGATTGCATGGTTGCTTGATGACCGTGGATCCACCG
1 ATTGAAGATCACATAGTTGCTTGACAACCGTGGATCCACCG
* **
77449647 ATT-AAGAATCTCATAGTTGCTTGATGACCGTGGATCC
1 ATTGAAG-ATCACATAGTTGCTTGACAACCGTGGATCC
77449684 GCCGGTGGCT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
40 2 0.03
41 63 0.95
42 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (41 bp):
ATTGAAGATCACATAGTTGCTTGACAACCGTGGATCCACCG
Found at i:77456450 original size:43 final size:43
Alignment explanation
Indices: 77456369--77456454 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
77456359 TAAATCGTCA
**
77456369 ATGCCAATGTCCCAGACGTGGTCTTACATGTAGCCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATCG
*
77456412 ATGCCACTGTCCCAGACAG-GGTCTTAC-TCGTAAACACATATCG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACAT-GTAAACACATATCG
77456455 GAATCACAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 36 0.95
44 1 0.03
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATCG
Found at i:77459994 original size:43 final size:43
Alignment explanation
Indices: 77459946--77460029 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
77459936 TGTGATTTCA
*
77459946 ATATGTGATTACGA-GTAAGACC-CTGTCTGGGACAG-TGGCATCG
1 ATATGTGACTAC-ATGTAAGACCAC-GTCTGGGAC-GTTGGCATCG
*
77459989 ATATGTGGCTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 ATATGTGACTACATGTAAGACCACGTCTGGGACGTTGGCAT
77460030 TGTACGATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
42 2 0.06
43 33 0.92
44 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (43 bp):
ATATGTGACTACATGTAAGACCACGTCTGGGACGTTGGCATCG
Found at i:77478272 original size:43 final size:42
Alignment explanation
Indices: 77478225--77478368 Score: 152
Period size: 43 Copynumber: 3.4 Consensus size: 42
77478215 GCCAACATCT
*
77478225 CAGACATGGTCTTACATGTAATCAAATATCAATGCCACTGTCC
1 CAGACATGGTCTTACAT-TAATCAAATATCGATGCCACTGTCC
* * *
77478268 CAGACAGGGTCTTACATCAAATCAAATA-CGATGCTGA-TGTCC
1 CAGACATGGTCTTACAT-TAATCAAATATCGATGC-CACTGTCC
*
77478310 CAGACATGGTCTTACACATTAATCATA-ATCGATGCCAAC-GTCC
1 CAGACATGGTCTT--ACATTAATCAAATATCGATGCC-ACTGTCC
*
77478353 CAAACATGGTCTTACA
1 CAGACATGGTCTTACA
77478369 CGAAAACACA
Statistics
Matches: 85, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
41 3 0.04
42 23 0.27
43 55 0.65
44 4 0.05
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (42 bp):
CAGACATGGTCTTACATTAATCAAATATCGATGCCACTGTCC
Found at i:77481454 original size:13 final size:14
Alignment explanation
Indices: 77481424--77481457 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
77481414 AATATATCAA
*
77481424 TTATTATTTTTATG
1 TTATTATCTTTATG
77481438 TTATTATCTTT-TG
1 TTATTATCTTTATG
77481451 TTATTAT
1 TTATTAT
77481458 ATGAGAAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.21, C:0.03, G:0.06, T:0.71
Consensus pattern (14 bp):
TTATTATCTTTATG
Found at i:77481723 original size:50 final size:50
Alignment explanation
Indices: 77481606--77481886 Score: 303
Period size: 50 Copynumber: 5.6 Consensus size: 50
77481596 TGTGAGAACA
* * *** * *
77481606 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT--TGTTAGGTCG
* *
77481658 CGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCG
* * ** * * * *
77481708 CATGTTTAGTACTAAGTGCAGGCTACTATGCATACCCA-ATAGCTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATTG-TTAGGTCG
* * * *
77481759 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCG
** *
77481809 TGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCG
77481859 CATGTGTAGTACTAAGTGCAGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
77481887 TGCATACCAG
Statistics
Matches: 191, Mismatches: 35, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
50 118 0.62
51 40 0.21
52 33 0.17
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCG
Found at i:77481787 original size:101 final size:99
Alignment explanation
Indices: 77481658--77481886 Score: 295
Period size: 101 Copynumber: 2.3 Consensus size: 99
77481648 TTTTAGGTCT
* *
77481658 CGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGT-T-TAGTACT
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT--CATGTGTGTAGTACT
*
77481721 AAGTGCAGGCTACTATGCA-TACCCA-ATAGCTTCGATCA
64 AAGTGCAGGCTACTA--CAGTA-CCAGATAG-TTAGATCA
*
77481759 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCATGTGTGTAGTACTAA
* * *
77481824 GTGCAGGCTACTACATGTACCAGATTGTTAGGTCG
66 GTGCAGGCTACTACA-GTACCAGATAGTTAGATCA
*
77481859 CATGTGTAGTACTAAGTGCAGGCTACTA
1 CGTGTGTAGTACTAAGTGCAGGCTACTA
77481887 TGCATACCAG
Statistics
Matches: 115, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
99 7 0.06
100 36 0.31
101 72 0.63
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (99 bp):
CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCATGTGTGTAGTACTAA
GTGCAGGCTACTACAGTACCAGATAGTTAGATCA
Found at i:77481884 original size:151 final size:152
Alignment explanation
Indices: 77481608--77481894 Score: 479
Period size: 151 Copynumber: 1.9 Consensus size: 152
77481598 TGAGAACACA
* * *
77481608 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCTCGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGG-TTTAGGTCTCGTGTGTAGTACTAA
* * *
77481673 GTGTAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTTTAGTACTAAGTGCAGGCTACTATG
65 GTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
77481738 CATACCCAATAGCTTCGATCACG
130 CATACCCAATAGCTTCGATCACG
*
77481761 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG-TTAGGTCAT-GTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTTAGGTC-TCGTGTGTAGTACTAA
77481824 GTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
65 GTGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
77481889 CATACC
130 CATACC
77481895 AGAGAGCTTT
Statistics
Matches: 126, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
151 89 0.71
152 1 0.01
153 36 0.29
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (152 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTTAGGTCTCGTGTGTAGTACTAAG
TGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGC
ATACCCAATAGCTTCGATCACG
Found at i:77484359 original size:25 final size:24
Alignment explanation
Indices: 77484331--77484409 Score: 104
Period size: 25 Copynumber: 3.2 Consensus size: 24
77484321 ATGCTCATAC
* *
77484331 GAGCTATGAACCGGTATGCTCTCAT
1 GAGCTA-GAATCGGTAAGCTCTCAT
77484356 GAGCTGAGAATCGGTAAGCTCTCAT
1 GAGCT-AGAATCGGTAAGCTCTCAT
* *
77484381 GAGCTAAAATCAGTAAGCTCTCAT
1 GAGCTAGAATCGGTAAGCTCTCAT
77484405 GAGCT
1 GAGCT
77484410 GAAAGTAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
24 22 0.45
25 26 0.53
26 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (24 bp):
GAGCTAGAATCGGTAAGCTCTCAT
Found at i:77484396 original size:24 final size:25
Alignment explanation
Indices: 77484348--77484413 Score: 107
Period size: 24 Copynumber: 2.7 Consensus size: 25
77484338 GAACCGGTAT
* *
77484348 GCTCTCATGAGCTGAGAATCGGTAA
1 GCTCTCATGAGCTGAAAATCAGTAA
77484373 GCTCTCATGAGCT-AAAATCAGTAA
1 GCTCTCATGAGCTGAAAATCAGTAA
77484397 GCTCTCATGAGCTGAAA
1 GCTCTCATGAGCTGAAA
77484414 GTAATAAGCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 22 0.58
25 16 0.42
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (25 bp):
GCTCTCATGAGCTGAAAATCAGTAA
Found at i:77489118 original size:40 final size:40
Alignment explanation
Indices: 77489048--77489133 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
77489038 AACTACTGAA
* * * * *
77489048 TGTTTGCACATACGTGTCCCTGTTTGTACTTTGGTACTCC
1 TGTTTGCACACACGTGCCCCTATTTGTACTTCGGTACCCC
* *
77489088 TGTTTGCACACACTTGCCCCTATTTTTACTTCGGTACCCC
1 TGTTTGCACACACGTGCCCCTATTTGTACTTCGGTACCCC
77489128 TGTTTG
1 TGTTTG
77489134 TACTTTGGTA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.13, C:0.28, G:0.17, T:0.42
Consensus pattern (40 bp):
TGTTTGCACACACGTGCCCCTATTTGTACTTCGGTACCCC
Found at i:77489137 original size:20 final size:20
Alignment explanation
Indices: 77489104--77489149 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
77489094 CACACACTTG
* *
77489104 CCCCTATTTTTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
*
77489124 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTCGGTA
77489144 CCCCTG
1 CCCCTG
77489150 AACAGATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.11, C:0.33, G:0.15, T:0.41
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:77493108 original size:29 final size:30
Alignment explanation
Indices: 77493064--77493121 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
77493054 TTTACGAGCC
*
77493064 TAGGGGCTAAATTGCAAATATGTAAAAGTT
1 TAGGGGCTAAAATGCAAATATGTAAAAGTT
* *
77493094 TAGGGG-TAAAATGCAAATTTTTAAAAGT
1 TAGGGGCTAAAATGCAAATATGTAAAAGT
77493122 ATGATTTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 19 0.76
30 6 0.24
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.31
Consensus pattern (30 bp):
TAGGGGCTAAAATGCAAATATGTAAAAGTT
Found at i:77493453 original size:32 final size:32
Alignment explanation
Indices: 77493412--77493483 Score: 126
Period size: 32 Copynumber: 2.2 Consensus size: 32
77493402 TCATCATTAT
*
77493412 TATGAATGCTATGCCTGATGGTAACTTGTAAG
1 TATGAATGCTATGCCTGATGGTAACTCGTAAG
77493444 TATGAATGCTATGCCTGATGGTAACTCGTAAG
1 TATGAATGCTATGCCTGATGGTAACTCGTAAG
*
77493476 TGTGAATG
1 TATGAATG
77493484 ATATTGTGGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.33
Consensus pattern (32 bp):
TATGAATGCTATGCCTGATGGTAACTCGTAAG
Found at i:77495980 original size:13 final size:13
Alignment explanation
Indices: 77495962--77495988 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
77495952 GCTCGACAAG
77495962 GACACGCCCGTGT
1 GACACGCCCGTGT
77495975 GACACGCCCGTGT
1 GACACGCCCGTGT
77495988 G
1 G
77495989 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:77498141 original size:122 final size:122
Alignment explanation
Indices: 77497923--77498165 Score: 351
Period size: 122 Copynumber: 2.0 Consensus size: 122
77497913 CTAGGCCATG
* * * * *
77497923 TGGCTACATGATCGTGTCACACGGCCGTGTCTGGCGTGGTTCGCTTCTCCCACGGTCGTGTACCT
1 TGGCTACATGATCGTGTCACACGACAGTGTATGGCGCGGTTCGCTTCTCCCACGGTCGTGCACCT
* * * * *
77497988 CTGTACATGCTCGTGTTATTTTGATCGTGTCGTCAACGGGTGCTAGACATGGGCGTA
66 CTGCACACGCTCGTCTTATTTTGATCGTGTCGTCAACAGGTGCTAGAAATGGGCGTA
* *
77498045 TGGCTACATGATCGTGTCGCACGACAGTGTATGGCGCGGTTTGCTTCTCCCACGGTCGTGCACCT
1 TGGCTACATGATCGTGTCACACGACAGTGTATGGCGCGGTTCGCTTCTCCCACGGTCGTGCACCT
* * *
77498110 CTGCACACGCTCGTCTTATTTTGCTCTTGTCGTCCACAGGTGCTAGAAATGGGCGT
66 CTGCACACGCTCGTCTTATTTTGATCGTGTCGTCAACAGGTGCTAGAAATGGGCGT
77498166 GCCACACGCC
Statistics
Matches: 106, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
122 106 1.00
ACGTcount: A:0.14, C:0.27, G:0.28, T:0.30
Consensus pattern (122 bp):
TGGCTACATGATCGTGTCACACGACAGTGTATGGCGCGGTTCGCTTCTCCCACGGTCGTGCACCT
CTGCACACGCTCGTCTTATTTTGATCGTGTCGTCAACAGGTGCTAGAAATGGGCGTA
Found at i:77502077 original size:47 final size:47
Alignment explanation
Indices: 77501990--77502301 Score: 453
Period size: 47 Copynumber: 6.6 Consensus size: 47
77501980 CCCTTCGGGA
* * * * * * *
77501990 CTTATCACATTTATACACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77502037 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77502084 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77502131 CTTATCAAATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATC--ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77502180 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77502229 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77502276 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
77502302 CACAATTATC
Statistics
Matches: 240, Mismatches: 21, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
47 149 0.62
49 91 0.38
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:77502174 original size:96 final size:94
Alignment explanation
Indices: 77501990--77502301 Score: 471
Period size: 96 Copynumber: 3.3 Consensus size: 94
77501980 CCCTTCGGGA
* * * * * * *
77501990 CTTATCACATTTATACACTTTCACATCCATTACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
77502055 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * * *
77502084 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAAATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATC--ACATATATAC
77502149 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
77502180 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
77502245 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
77502276 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
77502302 CACAATTATC
Statistics
Matches: 197, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
94 59 0.30
96 95 0.48
98 43 0.22
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:77505757 original size:40 final size:40
Alignment explanation
Indices: 77505725--77506146 Score: 322
Period size: 40 Copynumber: 10.6 Consensus size: 40
77505715 CCAGCATGAT
* * * *
77505725 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* ** * *
77505765 TGGTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
77505805 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
77505845 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
77505885 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * * * * *
77505925 TGCTCTTCGAGACTTAGCCTGGTTATAGTAACTCGGACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* * * * * * *
77505966 TGC-CTTCGAGACTTAGCCCGGTTATAGTAACTCGGACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* * ** * * *
77506006 TGC-CTTCGGGATTTAACCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* * * *
77506046 TGC-CTTC-GGACTTAGCCCGGAATTA-GTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGG-A-TACATCACTAGCACGAA
* **
77506085 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAA
*
77506125 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
77506147 CATCATTCGA
Statistics
Matches: 328, Mismatches: 46, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
38 2 0.01
39 34 0.10
40 272 0.83
41 20 0.06
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:77505973 original size:120 final size:117
Alignment explanation
Indices: 77505729--77506146 Score: 385
Period size: 120 Copynumber: 3.5 Consensus size: 117
77505719 CATGATTGCT
* * * * ** *
77505729 CTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGGTCTTCGGGGTTTAGCACGGATATATC
1 CTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT-GCCTTCGGGACTTAGCCCGGATATATC
* * * **
77505794 ACTAGCACGAATGCTCTTCGGAACTTAGCCCGG-ATACATCACTAGCATGAATGC
65 ACTAGCACGAATGCTCTTCGG-ACTTAGCCCGGTATA-GTAACTCGCACAAATGC
* * *
77505848 TCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACAT
1 -CTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGC-CTTCGGGACTTAGCCCGGATATAT
* * *
77505913 CACTAGCATGAATGCTCTTCGAGACTTAGCCTGGTTATAGTAACTCGGACAAATGC
64 CACTAGCACGAATGCTCTTCG-GACTTAGCCCGG-TATAGTAACTCGCACAAATGC
* * * * * * * * *
77505969 CTTCGAGACTTAGCCCGGTTATAGTAACTCGGACAAATGCCTTCGGGATTTAACCCGGATTTAGT
1 CTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAATGCCTTCGGGACTTAGCCCGGATATA-T
* * * *
77506034 AACTCGCACCAATGC-CTTCGGACTTAGCCCGGAATTAGTAACTCGCACAAATGC
64 CACTAGCACGAATGCTCTTCGGACTTAGCCCGGTA-TAGTAACTCGCACAAATGC
* * *
77506088 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 CTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAATGCCTTCGGGACTTAGCCCGGA
77506147 CATCATTCGA
Statistics
Matches: 241, Mismatches: 47, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
118 3 0.01
119 70 0.29
120 129 0.54
121 36 0.15
122 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (117 bp):
CTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCCTTCGGGACTTAGCCCGGATATATCA
CTAGCACGAATGCTCTTCGGACTTAGCCCGGTATAGTAACTCGCACAAATGC
Found at i:77508201 original size:47 final size:47
Alignment explanation
Indices: 77508123--77508479 Score: 556
Period size: 47 Copynumber: 7.6 Consensus size: 47
77508113 CCCTTCGGGA
* * * * * *
77508123 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77508170 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77508217 CTCATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77508263 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77508310 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77508359 CTTATCACATATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77508407 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77508454 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
77508480 CACAATTATC
Statistics
Matches: 290, Mismatches: 16, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
46 72 0.25
47 124 0.43
48 18 0.06
49 76 0.26
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:77508350 original size:95 final size:94
Alignment explanation
Indices: 77508123--77508479 Score: 556
Period size: 95 Copynumber: 3.8 Consensus size: 94
77508113 CCCTTCGGGA
* * * * * * * *
77508123 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
77508188 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
77508217 CTCATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
77508281 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
77508310 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
77508375 ACACTTTCACATTCATCACAT-GGCCATTCGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
77508407 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
77508472 ATTCACAT
66 TTTCACAT
77508480 CACAATTATC
Statistics
Matches: 245, Mismatches: 13, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
93 74 0.30
94 33 0.13
95 77 0.31
96 16 0.07
97 18 0.07
98 27 0.11
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:77508429 original size:144 final size:142
Alignment explanation
Indices: 77508123--77508479 Score: 562
Period size: 144 Copynumber: 2.5 Consensus size: 142
77508113 CCCTTCGGGA
* * * * * * * *
77508123 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
77508186 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
77508251 TCGGCATTAGGC
131 TCGGCATTAGGC
77508263 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
77508328 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC--ATATATACACTTTCACATTCATCA
*
77508393 CAT-GGCCATTCGGC
129 CATCGG-CATTAGGC
77508407 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
77508472 A--TTCACAT
66 ACTTTCACAT
77508480 CACAATTATC
Statistics
Matches: 202, Mismatches: 10, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
140 47 0.23
142 53 0.26
143 2 0.01
144 100 0.50
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (142 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
TCGGCATTAGGC
Found at i:77513203 original size:25 final size:21
Alignment explanation
Indices: 77513185--77513234 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
77513175 TATGATAGCT
77513185 TGATATCGATGGATGTATGATA
1 TGATAT-GATGGATGTATGATA
*
77513207 TGGTATGATGGATGTATGATA
1 TGATATGATGGATGTATGATA
*
77513228 TGGTATG
1 TGATATG
77513235 TATATTTGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 22 0.81
22 5 0.19
ACGTcount: A:0.28, C:0.02, G:0.32, T:0.38
Consensus pattern (21 bp):
TGATATGATGGATGTATGATA
Found at i:77513245 original size:25 final size:21
Alignment explanation
Indices: 77513192--77513234 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
77513182 GCTTGATATC
77513192 GATGGATGTATGATATGGTAT
1 GATGGATGTATGATATGGTAT
77513213 GATGGATGTATGATATGGTAT
1 GATGGATGTATGATATGGTAT
77513234 G
1 G
77513235 TATATTTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.35, T:0.37
Consensus pattern (21 bp):
GATGGATGTATGATATGGTAT
Found at i:77513250 original size:25 final size:26
Alignment explanation
Indices: 77513192--77513250 Score: 61
Period size: 25 Copynumber: 2.3 Consensus size: 26
77513182 GCTTGATATC
77513192 GATGGATG-TATGATATGGTATGATG
1 GATGGATGATATGATATGGTATGATG
* * *
77513217 GATGTATGATATGGTAT-GTAT-ATTT
1 GATGGATGATATGATATGGTATGA-TG
77513242 GATGGATGA
1 GATGGATGA
77513251 ACTTTGATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 1 0.04
25 20 0.71
26 7 0.25
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (26 bp):
GATGGATGATATGATATGGTATGATG
Found at i:77514591 original size:22 final size:19
Alignment explanation
Indices: 77514550--77514589 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
77514540 ATACTATGTA
77514550 TCATCAAATGCAATTTTCT
1 TCATCAAATGCAATTTTCT
*
77514569 TCATCAAATGCAATTTCCT
1 TCATCAAATGCAATTTTCT
77514588 TC
1 TC
77514590 TTTTTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (19 bp):
TCATCAAATGCAATTTTCT
Found at i:77514654 original size:28 final size:27
Alignment explanation
Indices: 77514602--77514657 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 27
77514592 TTTAAAAATT
* *
77514602 TAAAAAAATATATTTATATTTTTAAGA
1 TAAAAAAATATATATATATTATTAAGA
77514629 TAAATAAAATAT-TATATATTGATTAAGA
1 TAAA-AAAATATATATATATT-ATTAAGA
77514657 T
1 T
77514658 CTATGCAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 11 0.44
28 14 0.56
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (27 bp):
TAAAAAAATATATATATATTATTAAGA
Found at i:77514782 original size:3 final size:3
Alignment explanation
Indices: 77514774--77514804 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
77514764 ACCTTGCTTT
77514774 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
77514805 ATATATATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:77517054 original size:23 final size:25
Alignment explanation
Indices: 77516989--77517061 Score: 87
Period size: 26 Copynumber: 3.0 Consensus size: 25
77516979 GTGAGCTGAA
77516989 TGTTCGCCAGTTTAGTTGCAAACTG
1 TGTTCGCCAGTTTAGTTGCAAACTG
*
77517014 GGTTTCGCCAGTTTAGTTGCAAA-T-
1 TG-TTCGCCAGTTTAGTTGCAAACTG
* * *
77517038 TGTTCGCCTGTTAAGTTGCGAACT
1 TGTTCGCCAGTTTAGTTGCAAACT
77517062 AGGGGTTTGC
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
23 17 0.41
24 2 0.05
25 2 0.05
26 20 0.49
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (25 bp):
TGTTCGCCAGTTTAGTTGCAAACTG
Found at i:77530363 original size:49 final size:50
Alignment explanation
Indices: 77530283--77530528 Score: 280
Period size: 49 Copynumber: 4.9 Consensus size: 50
77530273 ATCTATTGTG
* * * *
77530283 AGGTCACGTGTGTAGTACTGAGTGTAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
77530333 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * **
77530383 CGATCACGTGTGTAGTACTAAGTGCAGGGTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
77530433 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
77530483 -GGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
77530529 GCTTTGGCTA
Statistics
Matches: 164, Mismatches: 30, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 80 0.49
50 47 0.29
51 37 0.23
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:77530474 original size:101 final size:98
Alignment explanation
Indices: 77530286--77530528 Score: 288
Period size: 100 Copynumber: 2.4 Consensus size: 98
77530276 TATTGTGAGG
* * * *
77530286 TCACGTGTGTAGTACTGAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
* *
77530351 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCAGATAA-TT-GA
* * ** *
77530386 TCACGTGTGTAGTACTAAGTGCAGGGTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* * *
77530451 TAAGTGTAGGCTACTACGTGTACCAGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCAGATAATTGA
* * * * *
77530485 TCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCAGATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
77530529 GCTTTGGCTA
Statistics
Matches: 120, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
99 37 0.31
100 42 0.35
101 41 0.34
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCAGATAATTGA
Found at i:77536814 original size:46 final size:45
Alignment explanation
Indices: 77536761--77536971 Score: 198
Period size: 46 Copynumber: 4.6 Consensus size: 45
77536751 GACGAGGGCT
*
77536761 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATGAGATCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAG-ATGTG-TCC
* *
77536807 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT-TAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGTGT--CC
* * * ** * *
77536853 AATGTCAGACATGTCTGGGACATGCGTTGGCTACGAGATGTG-CT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGTGTCC
* *
77536897 AGTGTAAGACATGTCTGGGACATGCGTCAG-CACGGTTACATGTGT-C
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-G--AGATGTGTCC
*
77536943 AGTGTAAGACCTGTCTGGGACATGGCATC
1 AGTGTAAGACATGTCTGGGACAT-GCATC
77536972 GATACAGATG
Statistics
Matches: 137, Mismatches: 19, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
43 2 0.01
44 29 0.21
46 100 0.73
47 6 0.04
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGTGTCC
Found at i:77539756 original size:20 final size:18
Alignment explanation
Indices: 77539731--77539767 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
77539721 ATAGCTAGGT
77539731 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
77539751 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
77539768 TATGAATTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:77543653 original size:15 final size:16
Alignment explanation
Indices: 77543607--77543662 Score: 55
Period size: 16 Copynumber: 3.5 Consensus size: 16
77543597 CTATTTATTC
*
77543607 TATTCTATT-TATATTT
1 TATT-TATTATATATAT
77543623 TATTATATGT-TATATAT
1 TATT-TAT-TATATATAT
77543640 T-TTTATTATATATAT
1 TATTTATTATATATAT
77543655 TATTTATT
1 TATTTATT
77543663 TTACCATATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
14 1 0.03
15 11 0.31
16 15 0.43
17 8 0.23
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (16 bp):
TATTTATTATATATAT
Found at i:77556693 original size:44 final size:44
Alignment explanation
Indices: 77556590--77556952 Score: 496
Period size: 44 Copynumber: 8.3 Consensus size: 44
77556580 GATCTAAGAT
* * * * *
77556590 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAA-AAAGTA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
* * *
77556633 GATTTGGCGTCTCTGTATTGTCAGAGAGCATATCGAAGGTAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
77556677 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
* * *
77556721 GATTTGGCGTCTCTGTATTGTTAGAGAGCAGATCGAAGGTAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
*
77556765 GATTTGGCGTCTCCGTATTGTCAGAGAGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
* * * * *
77556809 GATTTGGCATCTCTGTATTGTCAGTGAACAAATCGAAGAT-GCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
* * * *
77556852 GATTTGGTGTTTCTGTATTGTCAGAGAGTAGATCAAAGGTAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
* * *
77556896 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAACC
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
77556940 GATTTGGCGTCTC
1 GATTTGGCGTCTC
77556953 AGTCAAGATA
Statistics
Matches: 278, Mismatches: 40, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
43 67 0.24
44 211 0.76
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
Found at i:77557029 original size:44 final size:44
Alignment explanation
Indices: 77556957--77557182 Score: 317
Period size: 44 Copynumber: 5.1 Consensus size: 44
77556947 CGTCTCAGTC
* ** *
77556957 AAGATAACAGATTTGGCGCCTCTGTATTGCCAGAGAGCAGATCG
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
* * * *
77557001 AAGGTAGCAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCA
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
* * *
77557045 AAGATAGCAGATTTGGTATCTCTGTATTGTCAAAGAGCAAATCG
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
* * *
77557089 AAGACAGCAGATTTGGTATCTCTGTATTGTCAGAGAGCAAATCG
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
*
77557133 AAGATAGCAGATTTGGCATCTTTGTATTGTCAGAGAGCAGATCG
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
77557177 AAGATA
1 AAGATA
77557183 TCAACATGGT
Statistics
Matches: 163, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 163 1.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (44 bp):
AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
Found at i:77557102 original size:158 final size:157
Alignment explanation
Indices: 77556800--77557104 Score: 421
Period size: 158 Copynumber: 1.9 Consensus size: 157
77556790 GAGCAGATCA
* * * * * *
77556800 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGTGAACAAATCGAAGATGCAGATTTGGTGTTTC
1 AAGATAACAGATTTGGCACCTCTGTATTGCCAGAGAACAAATCGAAGATGCAGATTTGGCGTCTC
* * * * *
77556865 TGTATTGTCAGAGAGTAGATCAAAGGTAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATC
66 TATATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAAAGAGCAAATC
* *
77556930 AAAGATAACCGATTTGGCGTCTCAGTC
131 AAAGACAACAGATTTGGCGTCTCAGTC
* * * *
77556957 AAGATAACAGATTTGGCGCCTCTGTATTGCCAGAGAGCAGATCGAAGGTAGCAGATTTGGCGTCT
1 AAGATAACAGATTTGGCACCTCTGTATTGCCAGAGAACAAATCGAAGAT-GCAGATTTGGCGTCT
*
77557022 CTATATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGTATCTCTGTATTGTCAAAGAGCAAAT
65 CTATATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAAAGAGCAAAT
* *
77557087 CGAAGACAGCAGATTTGG
130 CAAAGACAACAGATTTGG
77557105 TATCTCTGTA
Statistics
Matches: 127, Mismatches: 20, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
157 41 0.32
158 86 0.68
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (157 bp):
AAGATAACAGATTTGGCACCTCTGTATTGCCAGAGAACAAATCGAAGATGCAGATTTGGCGTCTC
TATATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTGTCAAAGAGCAAATC
AAAGACAACAGATTTGGCGTCTCAGTC
Found at i:77558692 original size:22 final size:22
Alignment explanation
Indices: 77558667--77558845 Score: 64
Period size: 25 Copynumber: 7.7 Consensus size: 22
77558657 TTTTAAGTAT
77558667 TATATATATTATTTTTTTTATA
1 TATATATATTATTTTTTTTATA
* * * *
77558689 TATAAATAGTAATTATTTATATAA
1 TATATATA-TTATTTTTTTTAT-A
77558713 TAATATATATTATTATATGTCTTTATA
1 T-ATATATATTATT-T-T-T-TTTATA
* * *
77558740 AAT-TTTATTATATGTTATATTTTTA
1 TATATATATTAT-T-TT-T-TTTATA
*
77558765 -ATATATACTATTTATTCTATTATA
1 TATATATATTATTT-TT-T-TTATA
* *
77558789 TTTATAT-TTATATTTTATTATA
1 TATATATATTAT-TTTTTTTATA
* *
77558811 TGT-TATA-TATTTTTATTATA
1 TATATATATTATTTTTTTTATA
77558831 TATAT-TATTTATTTT
1 TATATATA-TTATTTT
77558846 ACCATATTTT
Statistics
Matches: 117, Mismatches: 23, Indels: 34
0.67 0.13 0.20
Matches are distributed among these distances:
20 14 0.12
21 7 0.06
22 20 0.17
23 13 0.11
24 19 0.16
25 33 0.28
26 5 0.04
27 2 0.02
28 4 0.03
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
TATATATATTATTTTTTTTATA
Found at i:77558717 original size:21 final size:21
Alignment explanation
Indices: 77558683--77558730 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
77558673 TATTATTTTT
77558683 TTTATATATAAATAGTA-ATTA
1 TTTATATATAAATA-TATATTA
77558704 TTTATATA-ATAATATATATTA
1 TTTATATATA-AATATATATTA
77558725 -TTATAT
1 TTTATAT
77558731 GTCTTTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
TTTATATATAAATATATATTA
Found at i:77558752 original size:81 final size:81
Alignment explanation
Indices: 77558664--77558846 Score: 187
Period size: 81 Copynumber: 2.3 Consensus size: 81
77558654 TAATTTTAAG
77558664 TATTATATATATTATTTTTTTTATATATAAATAGTAATTAT-TTATA-TAATA-ATATATATTAT
1 TATTATATATATTATTTTTTTTATATAT-AATAGTAATTATATTATATTAATATATATATATTAT
*
77558726 TATATGTCTTTATAAATTT
65 TATATGT-TATAT-AATTT
* * * * * * * * * *
77558745 TA-T-TATATGTTATATTTTTAATATATACTATTTATTCTATTATATTTATATTTATATTTTATT
1 TATTATATATATTATTTTTTTTATATATAATAGTAATTATATTATATTAATATATATATATTATT
*
77558808 ATATGTTATATATTTT
66 ATATGTTATATAATTT
*
77558824 TATTATATATATTATTTATTTTA
1 TATTATATATATTATTTTTTTTA
77558847 CCATATTTTA
Statistics
Matches: 81, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
78 8 0.10
79 31 0.38
80 10 0.12
81 32 0.40
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (81 bp):
TATTATATATATTATTTTTTTTATATATAATAGTAATTATATTATATTAATATATATATATTATT
ATATGTTATATAATTT
Found at i:77558786 original size:59 final size:62
Alignment explanation
Indices: 77558723--77558843 Score: 160
Period size: 59 Copynumber: 2.0 Consensus size: 62
77558713 TAATATATAT
*
77558723 TATTATATGTCT-TTATAAATTTTATTATATG-T-TATATTTTTA-ATATATACTATTTATTC
1 TATTATATGTATATT-TAAATTTTATTATATGTTATATATTTTTATATATATACTATTTATTC
* * *
77558782 TATTATATTTATATTTATATTTTATTATATGTTATATATTTTTATTATATATATTATTTATT
1 TATTATATGTATATTTAAATTTTATTATATGTTATATATTTTTA-TATATATACTATTTATT
77558844 TTACCATATT
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
59 25 0.47
60 3 0.06
61 10 0.19
63 15 0.28
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (62 bp):
TATTATATGTATATTTAAATTTTATTATATGTTATATATTTTTATATATATACTATTTATTC
Found at i:77558825 original size:27 final size:27
Alignment explanation
Indices: 77558741--77558826 Score: 75
Period size: 27 Copynumber: 3.0 Consensus size: 27
77558731 GTCTTTATAA
*
77558741 ATTTTATTATATGTTATATTTTTAATATAT
1 ATTTTATTATATGTTATATATTT--T-TAT
* * *
77558771 ACTATTTATTCTAT-TATATTTATATTTAT
1 A-T-TTTATTATATGT-TATATATTTTTAT
77558800 ATTTTATTATATGTTATATATTTTTAT
1 ATTTTATTATATGTTATATATTTTTAT
77558827 TATATATATT
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
27 20 0.44
28 2 0.04
29 4 0.09
30 2 0.04
31 2 0.04
32 15 0.33
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (27 bp):
ATTTTATTATATGTTATATATTTTTAT
Found at i:77561653 original size:39 final size:40
Alignment explanation
Indices: 77561487--77561670 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
77561477 GCTACTCGCT
* * *
77561487 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTAGCA
* * *
77561527 CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAATTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
* *
77561567 CAAATGCCTTCGGGACTTAGCCCGGATTTAGAAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
** * *
77561607 CAAATGCCTTCGGGACTT-GCCCGGAACTAGTCACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
*
77561646 CAGATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
77561671 TTATCATCCA
Statistics
Matches: 126, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 32 0.25
40 92 0.73
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
Found at i:77569510 original size:40 final size:39
Alignment explanation
Indices: 77569453--77569645 Score: 190
Period size: 40 Copynumber: 4.9 Consensus size: 39
77569443 GGATATAGCT
* * *
77569453 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
* * *
77569493 ACTCGCATAATTTCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
* * *
77569533 ACTTGAACAAATGCCTTCGGGACTTAGCCCAGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTTAGTA
*** *
77569573 ACTCGCACAAATGCCTTCGGGACTT-GCCCCGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAG-CCCGGTTTAGTA
* * * *
77569612 ACTAGCGCAGATGCCTTCGGGACTTATCCCGGTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
77569646 ATTATCCAAA
Statistics
Matches: 125, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
39 33 0.26
40 89 0.71
41 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:77576839 original size:11 final size:11
Alignment explanation
Indices: 77576797--77576839 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
77576787 ACATTGATAT
77576797 ACATGATATG-
1 ACATGATATGC
*
77576807 ACATGATATGT
1 ACATGATATGC
77576818 ACATGATATGC
1 ACATGATATGC
77576829 ACATGATATGC
1 ACATGATATGC
77576840 TATGATATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
10 10 0.32
11 21 0.68
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (11 bp):
ACATGATATGC
Found at i:77576844 original size:21 final size:20
Alignment explanation
Indices: 77576799--77576847 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
77576789 ATTGATATAC
77576799 ATGATATGACATGATATG-T
1 ATGATATGACATGATATGCT
77576818 ACATGATATGCACATGATATGCT
1 --ATGATATG-ACATGATATGCT
77576841 ATGATAT
1 ATGATAT
77576848 ATTCACTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 15 0.58
22 10 0.38
23 1 0.04
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (20 bp):
ATGATATGACATGATATGCT
Found at i:77576928 original size:24 final size:24
Alignment explanation
Indices: 77576897--77576942 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
77576887 GAAGTGTGGA
**
77576897 AAAGGGCTTTGCC-CCAGTTATTT
1 AAAGGGCTAGGCCTCCAGTTATTT
77576920 AAAGAGGCTAGGCCTCCAGTTAT
1 AAAG-GGCTAGGCCTCCAGTTAT
77576943 ATGATAAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 7 0.37
25 8 0.42
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (24 bp):
AAAGGGCTAGGCCTCCAGTTATTT
Found at i:77577219 original size:29 final size:29
Alignment explanation
Indices: 77577136--77577219 Score: 107
Period size: 29 Copynumber: 2.8 Consensus size: 29
77577126 CGTTTACAGC
* **
77577136 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGT-ATATG-TTAAACA
77577167 AAAGGCTTCGGCCCAGTA-ACTGTTAAACA
1 AAAGGCTTCGGCCCAGTATA-TGTTAAACA
77577196 AAAGGCTTCGGCCCAGTATATGTT
1 AAAGGCTTCGGCCCAGTATATGTT
77577220 GAGACTGAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
29 27 0.56
30 4 0.08
31 17 0.35
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (29 bp):
AAAGGCTTCGGCCCAGTATATGTTAAACA
Done.