Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 237 of 325
Found at i:77584680 original size:21 final size:20
Alignment explanation
Indices: 77584654--77584715 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 20
77584644 AACATTGATA
77584654 TACATGATATGACATGATATG
1 TACATGATATG-CATGATATG
*
77584675 TACATGATATGTTATGATATG
1 TACATGATATG-CATGATATG
*
77584696 CACATGATATGCTATGATAT
1 TACATGATATGC-ATGATAT
77584716 ATTCACTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (20 bp):
TACATGATATGCATGATATG
Found at i:77584681 original size:11 final size:11
Alignment explanation
Indices: 77584654--77584706 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
77584644 AACATTGATA
77584654 TACATGATATG
1 TACATGATATG
77584665 -ACATGATATG
1 TACATGATATG
77584675 TACATGATATG
1 TACATGATATG
*
77584686 T-TATGATATG
1 TACATGATATG
*
77584696 CACATGATATG
1 TACATGATATG
77584707 CTATGATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
10 18 0.49
11 19 0.51
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (11 bp):
TACATGATATG
Found at i:77584695 original size:5 final size:5
Alignment explanation
Indices: 77584657--77584715 Score: 55
Period size: 5 Copynumber: 11.4 Consensus size: 5
77584647 ATTGATATAC
* * * * *
77584657 ATGAT ATGAC ATGAT ATGTAC ATGAT ATGTT ATGAT ATGCAC ATGAT ATGCT
1 ATGAT ATGAT ATGAT ATG-AT ATGAT ATGAT ATGAT ATG-AT ATGAT ATGAT
77584709 ATGAT AT
1 ATGAT AT
77584716 ATTCACTATA
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
5 34 0.81
6 8 0.19
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.37
Consensus pattern (5 bp):
ATGAT
Found at i:77584707 original size:11 final size:10
Alignment explanation
Indices: 77584649--77584715 Score: 75
Period size: 10 Copynumber: 6.6 Consensus size: 10
77584639 CATGAAACAT
77584649 TGATAT-ACA
1 TGATATGACA
77584658 TGATATGACA
1 TGATATGACA
77584668 TGATATGTACA
1 TGATATG-ACA
**
77584679 TGATATGTTA
1 TGATATGACA
77584689 TGATATGCACA
1 TGATATG-ACA
77584700 TGATATG-CTA
1 TGATATGAC-A
77584710 TGATAT
1 TGATAT
77584716 ATTCACTATA
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
9 7 0.14
10 25 0.50
11 18 0.36
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (10 bp):
TGATATGACA
Found at i:77593404 original size:8 final size:8
Alignment explanation
Indices: 77593391--77593419 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
77593381 CACATTTCAG
77593391 CTGATAGT
1 CTGATAGT
77593399 CTGATAGT
1 CTGATAGT
77593407 CTGATAGT
1 CTGATAGT
77593415 CTGAT
1 CTGAT
77593420 GTACCAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (8 bp):
CTGATAGT
Found at i:77606510 original size:47 final size:47
Alignment explanation
Indices: 77606453--77606709 Score: 356
Period size: 47 Copynumber: 5.4 Consensus size: 47
77606443 ATTGATGTAC
* * *
77606453 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
77606500 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
77606549 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
77606596 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGAGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
77606643 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
77606690 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
77606710 TCCCGAAGGG
Statistics
Matches: 190, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
46 1 0.01
47 148 0.78
49 40 0.21
50 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.26
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:77606587 original size:22 final size:22
Alignment explanation
Indices: 77606560--77606681 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
77606550 CATGTGTATG
77606560 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
77606582 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
77606607 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
77606629 TGTGATGAATG-AGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
77606654 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
77606676 TGTGAT
1 TGTGAT
77606682 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:77620228 original size:48 final size:48
Alignment explanation
Indices: 77620166--77621070 Score: 1612
Period size: 48 Copynumber: 18.9 Consensus size: 48
77620156 TATATATGTG
77620166 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
77620214 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
77620262 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
77620310 TGTGGTAAAGCCGAATGGCTAGTGTGCAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
77620358 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
77620406 TGTGGTGAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
77620454 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
77620502 TTTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
77620550 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
77620598 TGTGGTAAAGCCGAATGGCTAGTGTGCAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
77620646 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
77620694 TGTGGTAAAGTCGAATGACTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
77620742 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGACATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
77620790 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
77620838 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
77620886 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
77620934 TGTGGTAAAGCCGAATGGCTACTCTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
77620982 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
77621030 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
77621071 GTGTGTATAT
Statistics
Matches: 820, Mismatches: 37, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 820 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:77621264 original size:37 final size:37
Alignment explanation
Indices: 77621214--77621350 Score: 247
Period size: 37 Copynumber: 3.7 Consensus size: 37
77621204 AATATATTCT
77621214 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
77621251 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
77621288 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTTC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
77621325 GGGTAAGACCCGATAACTACGTGTGG
1 GGGTAAGACCCGATGACTACGTGTGG
77621351 GGACTATTCG
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:77627024 original size:30 final size:30
Alignment explanation
Indices: 77626988--77627044 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
77626978 TAATATGAAC
*
77626988 TTTTGCAAAATTACATTTTTGCCCCTAAAT
1 TTTTGCAAAATTACACTTTTGCCCCTAAAT
*
77627018 TTTTGCATAATTACACTTTTGCCCCTA
1 TTTTGCAAAATTACACTTTTGCCCCTA
77627045 GGCTTGGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44
Consensus pattern (30 bp):
TTTTGCAAAATTACACTTTTGCCCCTAAAT
Found at i:77631729 original size:42 final size:42
Alignment explanation
Indices: 77631662--77631772 Score: 168
Period size: 42 Copynumber: 2.6 Consensus size: 42
77631652 AAGTCGGTTC
* *
77631662 CGATTCCATGTCCCAGACATGGTCTTATACGGGACCTCATAT
1 CGATGCCATGTCCCAGACATGGTCTTATACGGGAACTCATAT
* * *
77631704 CGATGCCATGTCCCAGATATAGTCTTATATGGGAACTCATAT
1 CGATGCCATGTCCCAGACATGGTCTTATACGGGAACTCATAT
*
77631746 CGATGCCATGTCTCAGACATGGTCTTA
1 CGATGCCATGTCCCAGACATGGTCTTA
77631773 CACAAAATCT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (42 bp):
CGATGCCATGTCCCAGACATGGTCTTATACGGGAACTCATAT
Found at i:77631785 original size:42 final size:41
Alignment explanation
Indices: 77631662--77631813 Score: 151
Period size: 42 Copynumber: 3.6 Consensus size: 41
77631652 AAGTCGGTTC
* *
77631662 CGATTCCATGTCCCAGACATGGTCTTATACGGGACCTCATAT
1 CGATGCCATGTCCCAGACATGGTCTTATAC-GGAACTCATAT
* * *
77631704 CGATGCCATGTCCCAGATATAGTCTTATATGGGAACTCATAT
1 CGATGCCATGTCCCAGACATGGTCTTATA-CGGAACTCATAT
* * **
77631746 CGATGCCATGTCTCAGACATGGTCTTACACAAAATCTCATAT
1 CGATGCCATGTCCCAGACATGGTCTTATACGGAA-CTCATAT
* * * * *
77631788 CAACGCCATATCCTAGATATGGTCTT
1 CGATGCCATGTCCCAGACATGGTCTT
77631814 GCACTGGCAC
Statistics
Matches: 90, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
41 2 0.02
42 88 0.98
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (41 bp):
CGATGCCATGTCCCAGACATGGTCTTATACGGAACTCATAT
Found at i:77631858 original size:48 final size:48
Alignment explanation
Indices: 77631806--77631913 Score: 126
Period size: 48 Copynumber: 2.2 Consensus size: 48
77631796 TATCCTAGAT
* **
77631806 ATGGTCTTGCACTGGCACACATATCAATGCCGATGCCATGTCCCAAAC
1 ATGGTCTTACACTGGCACACATATCAACACCGATGCCATGTCCCAAAC
* * * * * *
77631854 ATGGTCTTACACTGGCTCTCATATCAACACGGATTCCATGTCCCAGAT
1 ATGGTCTTACACTGGCACACATATCAACACCGATGCCATGTCCCAAAC
*
77631902 ATGGTCTAACAC
1 ATGGTCTTACAC
77631914 GGGATCTCAT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGGTCTTACACTGGCACACATATCAACACCGATGCCATGTCCCAAAC
Found at i:77636792 original size:47 final size:47
Alignment explanation
Indices: 77636738--77637230 Score: 810
Period size: 47 Copynumber: 10.4 Consensus size: 47
77636728 CAGCCAAGAC
* *
77636738 AGTGTATATATGTTATAAGGCCTAATGGCTGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77636785 AGTGTATATATATGTGATAAGGCCTAATGTCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77636834 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77636881 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77636930 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77636979 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77637026 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77637073 GGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77637120 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
77637167 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTG--
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77637212 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
77637231 TCCCGAAGGG
Statistics
Matches: 426, Mismatches: 16, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
45 16 0.04
47 270 0.63
49 140 0.33
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:77637399 original size:37 final size:37
Alignment explanation
Indices: 77637349--77637486 Score: 242
Period size: 37 Copynumber: 3.7 Consensus size: 37
77637339 CCGAGCTCTA
77637349 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
77637386 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
77637423 AAGACCCGATGACTACGTGTGGAGA-TATTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTA-TGTCCGGGT
* *
77637460 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
77637487 TCGTCTGAGC
Statistics
Matches: 97, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
36 2 0.02
37 94 0.97
38 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:77639198 original size:40 final size:40
Alignment explanation
Indices: 77638777--77639184 Score: 622
Period size: 40 Copynumber: 10.2 Consensus size: 40
77638767 GGGCTAAATC
77638777 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
77638817 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
77638857 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
77638897 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* * * *
77638937 CCGAAGAGCATTCGTGCTAGTGATGTATCTGGGCTAAATC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
77638977 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* * * *
77639017 CCGAAGAGCATTCGTGCTAGTGATATATCCATG-CTAAATC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCC-GGACTAAGTT
77639057 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* * ***
77639097 CCGAAGAGCATTCGTGCTAGTGATATATCCGTACTAAACC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* * * * *
77639137 CCAAAGAGCATTCGTGCTGGTGTTATATCCAGG-CTAAGTC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCC-GGACTAAGTT
77639177 CCGAAGAG
1 CCGAAGAG
77639185 TAATCATGCT
Statistics
Matches: 337, Mismatches: 28, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
39 1 0.00
40 334 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
Found at i:77643005 original size:49 final size:47
Alignment explanation
Indices: 77642788--77643518 Score: 1248
Period size: 47 Copynumber: 15.4 Consensus size: 47
77642778 CAGCCAAGAC
*
77642788 AGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77642835 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77642882 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77642929 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77642976 AGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77643025 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77643074 AGTGTATATATATGTGATAAGGCCTAATGTCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77643123 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77643170 AGTGGTATATATATTGATAAGGCCTAATGGCCGATGTGATGAATGT-AA
1 AGT-GTATATAT-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77643218 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77643265 AGTGTATATATGTGATAAGGCCTAATCGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77643312 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77643359 GGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77643406 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
77643453 TGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77643500 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
77643519 TCCGAAGGCA
Statistics
Matches: 656, Mismatches: 21, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
46 32 0.05
47 444 0.68
48 13 0.02
49 160 0.24
51 7 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:77643773 original size:37 final size:37
Alignment explanation
Indices: 77643635--77643772 Score: 240
Period size: 37 Copynumber: 3.7 Consensus size: 37
77643625 CCGAGCTCTA
77643635 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
77643672 AAGACCTGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
77643709 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
77643746 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
77643773 TCGTCTGAGC
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:77653953 original size:83 final size:84
Alignment explanation
Indices: 77653851--77654029 Score: 204
Period size: 83 Copynumber: 2.2 Consensus size: 84
77653841 TTGCTAGGTG
* * * *
77653851 TAAAGCCT-AGTATAATACACCGGCATAGAA-CCTGCTAGGTAATAGGCCTAACATAATACACCG
1 TAAAGCCTGA-TATAATACACCGACATA-AAGCCTACTAGGCAATAAGCCTAACATAATACACCG
*
77653914 ACAT-AAAGCCTGTTAGGCAA
64 ACATCAAAGCCTGCTAGGCAA
* * * * * *
77653934 TAAAGCCTGATATAATACACTGACATAAAGCCTACTAGGCAATAAGCCTGATATCATACACTGGC
1 TAAAGCCTGATATAATACACCGACATAAAGCCTACTAGGCAATAAGCCTAACATAATACACCGAC
*
77653999 ATCAAAGCTTGCTAGGCAA
66 ATCAAAGCCTGCTAGGCAA
77654018 T-AAGCCTGATAT
1 TAAAGCCTGATAT
77654030 TATATTACTG
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
82 2 0.02
83 63 0.78
84 16 0.20
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.22
Consensus pattern (84 bp):
TAAAGCCTGATATAATACACCGACATAAAGCCTACTAGGCAATAAGCCTAACATAATACACCGAC
ATCAAAGCCTGCTAGGCAA
Found at i:77653962 original size:42 final size:41
Alignment explanation
Indices: 77653853--77654029 Score: 196
Period size: 42 Copynumber: 4.3 Consensus size: 41
77653843 GCTAGGTGTA
* *
77653853 AAGCCT-AGTATAATACACCGGCATAGAA-CCTGCTAGGTAAT
1 AAGCCTGA-TATAATACACCGACATA-AAGCCTGCTAGGCAAT
* * * *
77653894 AGGCCTAACATAATACACCGACATAAAGCCTGTTAGGCAAT
1 AAGCCTGATATAATACACCGACATAAAGCCTGCTAGGCAAT
* *
77653935 AAAGCCTGATATAATACACTGACATAAAGCCTACTAGGCAAT
1 -AAGCCTGATATAATACACCGACATAAAGCCTGCTAGGCAAT
* * * *
77653977 AAGCCTGATATCATACACTGGCATCAAAGCTTGCTAGGCAAT
1 AAGCCTGATATAATACACCGACAT-AAAGCCTGCTAGGCAAT
77654019 AAGCCTGATAT
1 AAGCCTGATAT
77654030 TATATTACTG
Statistics
Matches: 117, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
40 2 0.02
41 53 0.45
42 62 0.53
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.22
Consensus pattern (41 bp):
AAGCCTGATATAATACACCGACATAAAGCCTGCTAGGCAAT
Found at i:77668291 original size:42 final size:41
Alignment explanation
Indices: 77668183--77668359 Score: 223
Period size: 42 Copynumber: 4.3 Consensus size: 41
77668173 GCTCGGTGTA
* *
77668183 AAGCCT-AGTATAATACACCGGCACAGAA-CCTGTTAGGCAAT
1 AAGCCTGA-TATAATACACCGGCATA-AAGCCTGCTAGGCAAT
* *
77668224 AGGCCTGACATAATACACCGGCATAAAGCCTGCTAGGCAAT
1 AAGCCTGATATAATACACCGGCATAAAGCCTGCTAGGCAAT
* *
77668265 AAAGCTTGATATAATACACCGACATAAAGCCTGCTAGGCAAT
1 -AAGCCTGATATAATACACCGGCATAAAGCCTGCTAGGCAAT
* * *
77668307 AAGCCTGATATCATACACTGGCATCAAAGCTTGCTAGGCAAT
1 AAGCCTGATATAATACACCGGCAT-AAAGCCTGCTAGGCAAT
77668349 AAGCCTGATAT
1 AAGCCTGATAT
77668360 TATATCACTA
Statistics
Matches: 119, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
40 2 0.02
41 52 0.44
42 65 0.55
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (41 bp):
AAGCCTGATATAATACACCGGCATAAAGCCTGCTAGGCAAT
Found at i:77668323 original size:83 final size:83
Alignment explanation
Indices: 77668183--77668359 Score: 225
Period size: 83 Copynumber: 2.1 Consensus size: 83
77668173 GCTCGGTGTA
* * *
77668183 AAGCCT-AGTATAATACACCGGCACAGAACCTGTTAGGCAATAGGCCTGACATAATACACCGGCA
1 AAGCCTGA-TATAATACACCGACACAGAACCTGCTAGGCAATAAGCCTGACATAATACACCGGCA
77668247 T-AAAGCCTGCTAGGCAAT
65 TCAAAGCCTGCTAGGCAAT
* * * * *
77668265 AAAGCTTGATATAATACACCGACATA-AAGCCTGCTAGGCAATAAGCCTGATATCATACACTGGC
1 -AAGCCTGATATAATACACCGACACAGAA-CCTGCTAGGCAATAAGCCTGACATAATACACCGGC
*
77668329 ATCAAAGCTTGCTAGGCAAT
64 ATCAAAGCCTGCTAGGCAAT
77668349 AAGCCTGATAT
1 AAGCCTGATAT
77668360 TATATCACTA
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
82 2 0.02
83 62 0.77
84 17 0.21
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (83 bp):
AAGCCTGATATAATACACCGACACAGAACCTGCTAGGCAATAAGCCTGACATAATACACCGGCAT
CAAAGCCTGCTAGGCAAT
Found at i:77674419 original size:21 final size:19
Alignment explanation
Indices: 77674394--77674437 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
77674384 CTCATTCACA
*
77674394 TCTCTTCTCTCACAATTTTTC
1 TCTCTTATCTCAC--TTTTTC
*
77674415 TCTCTTATTTCACTTTTTC
1 TCTCTTATCTCACTTTTTC
77674434 TCTC
1 TCTC
77674438 ATTTTTCCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 10 0.48
21 11 0.52
ACGTcount: A:0.11, C:0.32, G:0.00, T:0.57
Consensus pattern (19 bp):
TCTCTTATCTCACTTTTTC
Found at i:77681077 original size:19 final size:20
Alignment explanation
Indices: 77681053--77681090 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
77681043 TTTTAAAGAC
77681053 TTTAC-TTTATATTTATTTG
1 TTTACTTTTATATTTATTTG
*
77681072 TTTACTTTTATCTTTATTT
1 TTTACTTTTATATTTATTT
77681091 ACCTTTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.18, C:0.08, G:0.03, T:0.71
Consensus pattern (20 bp):
TTTACTTTTATATTTATTTG
Found at i:77683819 original size:13 final size:14
Alignment explanation
Indices: 77683803--77683831 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
77683793 ACACCCTAGA
77683803 GGAGG-AGAAAAGG
1 GGAGGCAGAAAAGG
77683816 GGAGGCAGAAAAGG
1 GGAGGCAGAAAAGG
77683830 GG
1 GG
77683832 GAGTAAGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.41, C:0.03, G:0.55, T:0.00
Consensus pattern (14 bp):
GGAGGCAGAAAAGG
Found at i:77688834 original size:40 final size:40
Alignment explanation
Indices: 77688780--77688931 Score: 169
Period size: 40 Copynumber: 3.9 Consensus size: 40
77688770 CCGGATATAG
*
77688780 TACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATACAT
*
77688820 TACCAGCACGAAGCCTGCCTGCGGGATTTAACCCGAATATACAT
1 TACCAGCACGAA----GCCTGCGGGATTTAACCCGGATATACAT
*
77688864 T---------AAGCCTGCGGGATTTAACTCGGATATACAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATACAT
*
77688895 TACCAGCACGAAGCCTGCGGGATTTAACCCAGATATA
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
77688932 TAATATATCG
Statistics
Matches: 93, Mismatches: 6, Indels: 26
0.74 0.05 0.21
Matches are distributed among these distances:
31 27 0.29
35 2 0.02
40 36 0.39
44 28 0.30
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.22
Consensus pattern (40 bp):
TACCAGCACGAAGCCTGCGGGATTTAACCCGGATATACAT
Found at i:77688874 original size:31 final size:31
Alignment explanation
Indices: 77688836--77688896 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
77688826 CACGAAGCCT
77688836 GCCTGCGGGATTTAACCCGAATATACATTAA
1 GCCTGCGGGATTTAACCCGAATATACATTAA
* *
77688867 GCCTGCGGGATTTAACTCGGATATACATTA
1 GCCTGCGGGATTTAACCCGAATATACATTA
77688897 CCAGCACGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (31 bp):
GCCTGCGGGATTTAACCCGAATATACATTAA
Found at i:77696873 original size:40 final size:40
Alignment explanation
Indices: 77696829--77696985 Score: 233
Period size: 40 Copynumber: 3.9 Consensus size: 40
77696819 CCGGATATAG
* * *
77696829 TACCATCACTAAGCCTGCGGGTTTTAACCCGGATATACAT
1 TACCAACACGAAGCCTGCGGGATTTAACCCGGATATACAT
* * *
77696869 TACCAGCATGAAGCCTGCGGGATTTAACCCGGATATACTT
1 TACCAACACGAAGCCTGCGGGATTTAACCCGGATATACAT
77696909 TACCAACACGAAGCCTGCGGGATTTAACCCGGATATACAT
1 TACCAACACGAAGCCTGCGGGATTTAACCCGGATATACAT
** *
77696949 TACCAACACGAAGCCTATGGGATTGAACCCGGATATA
1 TACCAACACGAAGCCTGCGGGATTTAACCCGGATATA
77696986 TAATATATTG
Statistics
Matches: 106, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 106 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (40 bp):
TACCAACACGAAGCCTGCGGGATTTAACCCGGATATACAT
Found at i:77712830 original size:17 final size:17
Alignment explanation
Indices: 77712810--77712853 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
77712800 TAAGATGATA
77712810 ATATTTAATATATAATT-
1 ATATTTAAT-TATAATTG
77712827 ATATTT-ATTATAATTG
1 ATATTTAATTATAATTG
77712843 ATATATTAATT
1 ATAT-TTAATT
77712854 TTTATCAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 7 0.29
16 6 0.25
17 8 0.33
18 3 0.12
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (17 bp):
ATATTTAATTATAATTG
Found at i:77712918 original size:17 final size:18
Alignment explanation
Indices: 77712896--77712931 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
77712886 TAATCTTGTC
77712896 TTAATAAATTAATA-GCA
1 TTAATAAATTAATATGCA
*
77712913 TTAATAATTTAATATGCA
1 TTAATAAATTAATATGCA
77712931 T
1 T
77712932 ATATTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.42
Consensus pattern (18 bp):
TTAATAAATTAATATGCA
Found at i:77715435 original size:100 final size:100
Alignment explanation
Indices: 77715262--77715449 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
77715252 TATTGTGAGG
* * *
77715262 TCACGTTTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
77715327 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
* *
77715362 TCACGTGTGTAGTACTAAGTGCAAGCTATTACATGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
*
77715427 AAGTGCAGGCTATTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
77715450 AGATAGCTTC
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
Found at i:77715441 original size:49 final size:49
Alignment explanation
Indices: 77715269--77715438 Score: 214
Period size: 49 Copynumber: 3.4 Consensus size: 49
77715259 AGGTCACGTT
*
77715269 TGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATG
*** * * * * *
77715318 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAA-T-TGGTCGCATG
* * *
77715369 TGTAGTACTAAGTGCAAGCTATTACATGTACCAGATTATTGGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATG
77715418 TGTAGTACTAAGTGCAGGCTA
1 TGTAGTACTAAGTGCAGGCTA
77715439 TTATGCGTAC
Statistics
Matches: 99, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
49 60 0.61
50 2 0.02
51 37 0.37
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATG
Found at i:77721611 original size:32 final size:32
Alignment explanation
Indices: 77721566--77721648 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 32
77721556 CTTTAACCCT
*
77721566 TCAGTAGCGGTATTATAATTGGCACAAAGCCA
1 TCAGTAACGGTATTATAATTGGCACAAAGCCA
* ** *
77721598 TCAGTAACTGTATTATGTTTGGCACATAGCCA
1 TCAGTAACGGTATTATAATTGGCACAAAGCCA
** *
77721630 TCAGCGACGGTAATATAAT
1 TCAGTAACGGTATTATAAT
77721649 CGACACACAG
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (32 bp):
TCAGTAACGGTATTATAATTGGCACAAAGCCA
Found at i:77722022 original size:34 final size:34
Alignment explanation
Indices: 77721984--77722049 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
77721974 AAAAGCATAT
* * *
77721984 CAGTCATACAACCACTGTCAAGTCAGTTAAATCA
1 CAGTCATACAACCACAGTCAAATCAGTCAAATCA
* *
77722018 CAGTCGTACAATCACAGTCAAATCAGTCAAAT
1 CAGTCATACAACCACAGTCAAATCAGTCAAAT
77722050 TCATAGTCCA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.39, C:0.26, G:0.12, T:0.23
Consensus pattern (34 bp):
CAGTCATACAACCACAGTCAAATCAGTCAAATCA
Found at i:77731438 original size:25 final size:25
Alignment explanation
Indices: 77731408--77731485 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
77731398 TAGGATTTTA
77731408 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * * *
77731433 TGTGAT-AAGGCCG-A-ATG-GCCA-A
1 TGTGATGAATG-TGAACATGCG-TATG
77731455 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
77731480 TGTGAT
1 TGTGAT
77731486 AAGGTCGAGT
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 14 0.37
ACGTcount: A:0.28, C:0.10, G:0.32, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCGTATG
Found at i:77731458 original size:47 final size:47
Alignment explanation
Indices: 77731407--77731934 Score: 786
Period size: 47 Copynumber: 11.1 Consensus size: 47
77731397 TTAGGATTTT
77731407 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
77731454 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGTCGAGTGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
77731501 ATGTGATGAATGTGAACCTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCCA
77731552 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
77731599 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
77731646 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCCA
77731697 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
77731744 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
77731791 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * * *
77731838 ATGTGATGAATGTGAACATGCATATATGAGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* ** * * *
77731885 ATGTGATGAATCTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
77731932 ATG
1 ATG
77731935 CGAAATGTGT
Statistics
Matches: 439, Mismatches: 34, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
47 354 0.81
48 2 0.00
50 2 0.00
51 81 0.18
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:77731568 original size:145 final size:144
Alignment explanation
Indices: 77731407--77731934 Score: 855
Period size: 145 Copynumber: 3.7 Consensus size: 144
77731397 TTAGGATTTT
77731407 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
77731472 TGCGTATGTGTGATAAGGTCGAGTGGCCAATGTGATGAATGTGAACCTATATATATATGCGTGAT
66 TGCGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACCT-TATATATATGCGTGAT
77731537 AAGGCCGAATGGCCA
130 AAGGCCGAATGGCCA
77731552 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
77731617 TGCGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACCTGTATATATATGCGTGAT
66 TGCGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACCT-TATATATATGCGTGAT
77731682 AAGGCCGAATGGCCA
130 AAGGCCGAATGGCCA
77731697 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *** *
77731762 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C--ATGCGTATGTGTGATA
66 TGCGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACCTTATATATATGCGTGATA
*
77731824 AGGCCGAATGACCA
131 AGGCCGAATGGCCA
* * * * *
77731838 ATGTGATGAATGTGAACATGCATATATGAGATGAGGCCGAATGGCCAATGTGATGAATCTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
** * * * *
77731903 TGTATATATGTGGTAAGGCCGAATGGCTAATG
66 TGCGTATGTGTGATAAGGCCGAGTGGCCAATG
77731935 CGAAATGTGT
Statistics
Matches: 365, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
141 112 0.31
144 1 0.00
145 252 0.69
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (144 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACCTTATATATATGCGTGATA
AGGCCGAATGGCCA
Found at i:77731579 original size:23 final size:23
Alignment explanation
Indices: 77731552--77731626 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
77731542 CGAATGGCCA
77731552 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
77731575 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
77731599 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
77731622 ATGTG
1 ATGTG
77731627 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:77732044 original size:46 final size:46
Alignment explanation
Indices: 77731908--77732044 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
77731898 GAACATGTAT
* * *
77731908 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGATATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
77731954 ATATGAGGTAAAGCCGAATGACTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
77732000 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
77732045 TGTATATATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.35, C:0.09, G:0.30, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:77733230 original size:33 final size:33
Alignment explanation
Indices: 77733188--77733253 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
77733178 GATGTTAGAT
*
77733188 AGATTACCAGGGAAAGTCTTCTATTGTTTTCTA
1 AGATTACCAGGAAAAGTCTTCTATTGTTTTCTA
77733221 AGATTACCAGGAAAAGTCTTCTATTGTTTTCTA
1 AGATTACCAGGAAAAGTCTTCTATTGTTTTCTA
77733254 GATGGTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (33 bp):
AGATTACCAGGAAAAGTCTTCTATTGTTTTCTA
Found at i:77738424 original size:50 final size:50
Alignment explanation
Indices: 77738305--77739087 Score: 1146
Period size: 48 Copynumber: 15.9 Consensus size: 50
77738295 TTGATGCATA
*
77738305 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
77738353 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* * *
77738403 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGCGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
77738453 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
77738503 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
77738551 AGATATGCATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
77738599 ATATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
77738647 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
77738697 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATATG
*
77738749 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
77738797 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATACATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* * *
77738847 AGATATGTATATGTGGTAAATCTGAATGGTTAATGTGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATATG
* *
77738899 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTCTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
77738947 AGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATGTATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATG
* * *
77738997 AGATATGCATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
77739045 AGATATGTATATGTAGTAAAGCCGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
77739088 GTAGGCGATG
Statistics
Matches: 677, Mismatches: 42, Indels: 30
0.90 0.06 0.04
Matches are distributed among these distances:
47 1 0.00
48 299 0.44
49 16 0.02
50 266 0.39
51 5 0.01
52 90 0.13
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (50 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
Found at i:77738659 original size:150 final size:146
Alignment explanation
Indices: 77738305--77739090 Score: 1204
Period size: 150 Copynumber: 5.3 Consensus size: 146
77738295 TTGATGCATA
77738305 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
77738370 AAAGCCGAATGGCTAATGCGAAATATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTA
66 AAAGCCGAATGGCTAATGCG-AA-ATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTA
*
77738435 ATGCGAAATATATATATG
129 ATGTGAAATATATATATG
* * *
77738453 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTG
* * * * *
77738518 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTA
64 GTAAAGCCGAATGGCTAATGCGAAATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTA
*
77738583 ATGTG-AA-ATATGTATG
129 ATGTGAAATATATATATG
*
77738599 ATATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
77738664 AAAGCCGAATGGCTAATGCGAAATATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTA
66 AAAGCCGAATGGCTAATGCG-AA-ATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTA
77738729 ATGTGAAATATATATATATG
129 ATGTG-AA-ATATATATATG
77738749 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
77738814 AAAGCCGAATGGCTAATGCGAAATATATACATGAGATATGTATATGTGGTAAATCTGAATGGTTA
66 AAAGCCGAATGGCTAATGCGAAATATAT--ATGAGATATGTATATGTGGTAAAGCTGAATGGTTA
77738879 ATGTGAAATATATATATATG
129 ATGTG-AA-ATATATATATG
* *
77738899 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTCTGAGATATGCATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* * * *
77738964 AAAGCCGAATGG-TCAATGTGAAATATGTATATGAGATATGCATATGTGGTAAAGCCGAATGGCT
66 AAAGCCGAATGGCT-AATGCGAAATA--TATATGAGATATGTATATGTGGTAAAGCTGAATGGTT
* *
77739028 AGTGTG-AA-ATATGTATG
128 AATGTGAAATATATATATG
* *
77739045 AGATATGTATATGTAGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
77739091 GGCGATGCGT
Statistics
Matches: 591, Mismatches: 34, Indels: 28
0.91 0.05 0.04
Matches are distributed among these distances:
144 44 0.07
145 4 0.01
146 135 0.23
147 3 0.01
148 84 0.14
149 8 0.01
150 310 0.52
152 3 0.01
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (146 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGCGAAATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAAT
GTGAAATATATATATG
Found at i:77739287 original size:37 final size:37
Alignment explanation
Indices: 77739237--77739308 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
77739227 GGAAATATAT
* *
77739237 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGAAGATTTTG
*
77739274 TCCGGGTAAGACCCGATAACTTCGTGTGAAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGAAGATTT
77739309 CATCTGAGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGAAGATTTTG
Found at i:77741511 original size:17 final size:17
Alignment explanation
Indices: 77741489--77741524 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
77741479 CCCAGAAAAG
77741489 AAAGAAAATAAAGTTAA
1 AAAGAAAATAAAGTTAA
77741506 AAAGAAAATAAAGTTAA
1 AAAGAAAATAAAGTTAA
77741523 AA
1 AA
77741525 TGGTCTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (17 bp):
AAAGAAAATAAAGTTAA
Found at i:77742148 original size:27 final size:26
Alignment explanation
Indices: 77742043--77742166 Score: 153
Period size: 26 Copynumber: 4.8 Consensus size: 26
77742033 CCTCTTTAAT
**
77742043 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
77742068 AACTGGGACA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
77742093 AACTGGGGCATAAGTCATTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
77742119 AACTGGGGCATAAGCCATTTTTCAATA
1 AACTGGGGCATAAGCC-CTTTTCAATA
* *
77742146 AACTAGGGCATAAGCCTTTTT
1 AACTGGGGCATAAGCCCTTTT
77742167 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
25 31 0.35
26 33 0.38
27 24 0.27
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:77742241 original size:20 final size:21
Alignment explanation
Indices: 77742216--77742263 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
77742206 TTATGAATAC
77742216 ATCATGTA-CATATCATA-CA
1 ATCATGTAGCATATCATATCA
77742235 TATCATG-AGCATATCATATCA
1 -ATCATGTAGCATATCATATCA
77742256 ATCATGTA
1 ATCATGTA
77742264 TATCAAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (21 bp):
ATCATGTAGCATATCATATCA
Found at i:77742341 original size:25 final size:25
Alignment explanation
Indices: 77742298--77742345 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
77742288 ATAAGTAAAC
* * *
77742298 CCTAGGGGTATAACGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
77742323 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
77742346 CATGATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:77749800 original size:17 final size:16
Alignment explanation
Indices: 77749774--77749809 Score: 63
Period size: 17 Copynumber: 2.2 Consensus size: 16
77749764 CCCAGAAAAG
77749774 AAAAAAAATAAAGTTA
1 AAAAAAAATAAAGTTA
77749790 AAAAGAAAATAAAGTTA
1 AAAA-AAAATAAAGTTA
77749807 AAA
1 AAA
77749810 TGGCCTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (16 bp):
AAAAAAAATAAAGTTA
Found at i:77750357 original size:25 final size:26
Alignment explanation
Indices: 77750329--77750425 Score: 119
Period size: 25 Copynumber: 3.8 Consensus size: 26
77750319 CCTCTTTAAT
***
77750329 AACTGGGGCA-AAGCCCTTTTGGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
77750354 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
77750379 AAC-AGGGCATCAGCCCTTTTTCAATA
1 AACTGGGGCATAAGCCC-TTTTCAATA
77750405 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
77750426 GCACTTCCTC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
24 5 0.08
25 30 0.48
26 16 0.26
27 11 0.18
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:77750406 original size:26 final size:27
Alignment explanation
Indices: 77750352--77750425 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
77750342 CCCTTTTGGG
*
77750352 TAAACTGGGGCA-AAGCCC-TTTTCAA
1 TAAACTAGGGCATAAGCCCTTTTTCAA
*
77750377 TAAAC-AGGGCATCAGCCCTTTTTCAA
1 TAAACTAGGGCATAAGCCCTTTTTCAA
*
77750403 TAAACTGGGGCATAAGCCCTTTT
1 TAAACTAGGGCATAAGCCCTTTT
77750426 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.12
25 10 0.24
26 12 0.29
27 15 0.36
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (27 bp):
TAAACTAGGGCATAAGCCCTTTTTCAA
Found at i:77750500 original size:20 final size:20
Alignment explanation
Indices: 77750475--77750521 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
77750465 TTATGAATAC
77750475 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
*
77750494 TATCATGAGCATATCATATCA
1 -ATCATGTGCATATCATATCA
77750515 ATCATGT
1 ATCATGT
77750522 ATATCAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:77753037 original size:43 final size:44
Alignment explanation
Indices: 77752989--77753100 Score: 140
Period size: 43 Copynumber: 2.6 Consensus size: 44
77752979 ATATCCTGGA
* * *
77752989 TATGGTTTTACATGTTATCACATATCGATGCCAATAG-CCTAG-C
1 TATGGTTTTACACGTAATCACATAACGATGCCAAT-GTCCTAGAC
* * *
77753032 TATGGTCTTACACGAAATCAAATAACGATGCCAATGTCCTAGAC
1 TATGGTTTTACACGTAATCACATAACGATGCCAATGTCCTAGAC
77753076 -ATGGTTTTACACGTAATCACATAAC
1 TATGGTTTTACACGTAATCACATAAC
77753101 TATAATCCTA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
42 1 0.02
43 56 0.97
44 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.30
Consensus pattern (44 bp):
TATGGTTTTACACGTAATCACATAACGATGCCAATGTCCTAGAC
Found at i:77757624 original size:48 final size:46
Alignment explanation
Indices: 77757505--77757629 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 46
77757495 GATATGTGTA
77757505 CTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGAGAG
* * * * *
77757551 CCAGTGTAAGACATGTTTGGGACATGCATCGGCCTTGAGA-TATGCAAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGA-G--AG
*
77757599 CTAGTGTAAGACTTGTCTGGGACATGGCATC
1 CTAGTGTAAGACATGTCTGGGACAT-GCATC
77757630 AACTTGACAT
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
45 1 0.01
46 37 0.55
48 24 0.36
49 5 0.07
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGAGAG
Found at i:77757649 original size:22 final size:22
Alignment explanation
Indices: 77757624--77757666 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
77757614 TCTGGGACAT
77757624 GGCATCAACTTGACATGTGTTC
1 GGCATCAACTTGACATGTGTTC
*
77757646 GGCATCAGCTTGACATGTGTT
1 GGCATCAACTTGACATGTGTT
77757667 AGTGTAAGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.33
Consensus pattern (22 bp):
GGCATCAACTTGACATGTGTTC
Found at i:77757773 original size:163 final size:161
Alignment explanation
Indices: 77757506--77757806 Score: 365
Period size: 163 Copynumber: 1.9 Consensus size: 161
77757496 ATATGTGTAC
* ** * *
77757506 TAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTTTGG
1 TAGTGTAAGACATGTCTGAGACATGCATCGACACCGAGACGAGAGCCAGTGTAAGACATGTCTAG
** * * * *
77757571 GACATGCATCGGCCTTGAGATATGCAAGCTAGTGTAAGACTTGTCTGGGACATGGCATCAACTT-
66 GACATGCATCAACCTCGAGATATGAAAGCTAGTGTAAGACCTGTCTAGGACATGGCATCAACTTA
77757635 GACATGTGTTCGGCATCAGCTTGACATGTGT
131 GACATGTGTTCGGCATCAGCTTGACATGTGT
* * * *
77757666 TAGTGTAAGACTTGTCTGAGACATGGCATTGACACCGATAGATGAGAGCCAGTGTAAG-CCTGTC
1 TAGTGTAAGACATGTCTGAGACAT-GCATCGACACCG--AGACGAGAGCCAGTGTAAGACATGTC
* * *
77757730 TAGGACATGGCATCAACCTCGATATATGAAA-ATCAGTGTAAGACCTGTCTAGGACATGGCATCG
63 TAGGACAT-GCATCAACCTCGAGATATGAAAGCT-AGTGTAAGACCTGTCTAGGACATGGCATCA
*
77757794 ACTTAGATATGTG
126 ACTTAGACATGTG
77757807 AGCCAGTGTA
Statistics
Matches: 116, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
160 22 0.19
161 9 0.08
162 12 0.10
163 66 0.57
164 7 0.06
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (161 bp):
TAGTGTAAGACATGTCTGAGACATGCATCGACACCGAGACGAGAGCCAGTGTAAGACATGTCTAG
GACATGCATCAACCTCGAGATATGAAAGCTAGTGTAAGACCTGTCTAGGACATGGCATCAACTTA
GACATGTGTTCGGCATCAGCTTGACATGTGT
Found at i:77757803 original size:49 final size:47
Alignment explanation
Indices: 77757667--77757843 Score: 155
Period size: 48 Copynumber: 3.7 Consensus size: 47
77757657 GACATGTGTT
* * * *
77757667 AGTGTAAGACTTGTCT-GAGACATGGCATTGACAC-CGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTAG-GACATGGCATCGAC-CTAGATATATGA-A-CC
* * *
77757716 AGTGTAAG-CCTGTCTAGGACATGGCATCAACCTCGATATATGAAAATC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACCTAGATATATG--AACC
* * *
77757764 AGTGTAAGACCTGTCTAGGACATGGCATCGACTTAGATATGTGAGCC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACCTAGATATATGAACC
*
77757811 AGTGTAAGACCATGT-TTGGAACATGGCATCGAC
1 AGTGTAAGACC-TGTCTAGG-ACATGGCATCGAC
77757844 ATTGTACTAT
Statistics
Matches: 109, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
47 17 0.16
48 51 0.47
49 40 0.37
50 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCGACCTAGATATATGAACC
Found at i:77764971 original size:16 final size:17
Alignment explanation
Indices: 77764938--77764971 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
77764928 CAATTAAATC
*
77764938 CCTAAAATGCATTTTTA
1 CCTAAAATGCACTTTTA
77764955 CCTAAAAT-CACTTTTA
1 CCTAAAATGCACTTTTA
77764971 C
1 C
77764972 AAAACATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.38
Consensus pattern (17 bp):
CCTAAAATGCACTTTTA
Found at i:77770955 original size:27 final size:27
Alignment explanation
Indices: 77770920--77771250 Score: 355
Period size: 27 Copynumber: 12.3 Consensus size: 27
77770910 GTAGGGCAAA
* *
77770920 TCAGTCATTTTACCTTACAGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
* * *
77770947 ACAGCCATTTTACCCTACAGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
* * * *
77770974 ACAGTCATTTTACCCTA-AAGTGTATC
1 TCAGTCATTTTACCCTATAGGGGTATT
* * ** *
77771000 ACTGTCATTTTACCCTGCAGGGGTAGT
1 TCAGTCATTTTACCCTATAGGGGTATT
* *
77771027 ACAGTCATTTTACCTTATAGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
* *
77771054 TCGGTCATTTTACCTTAT-GAGGGTATT
1 TCAGTCATTTTACCCTATAG-GGGTATT
*
77771081 TCAGTCATTTTACCCTATGGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
*
77771108 TC-GATCATTTTATCCTAT-GGGGATATT
1 TCAG-TCATTTTACCCTATAGGGG-TATT
*
77771135 TCGGTCATTTTACCCTATAGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
* * * *
77771162 TCGGTTATTTTACACTATGGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
*
77771189 TCGGTCATTTTACCCTATAGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
*
77771216 TCAGTCATTTTACCTTATAGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
*
77771243 TCGGTCAT
1 TCAGTCAT
77771251 CATTTCGGCC
Statistics
Matches: 264, Mismatches: 33, Indels: 14
0.85 0.11 0.05
Matches are distributed among these distances:
26 27 0.10
27 231 0.88
28 6 0.02
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.40
Consensus pattern (27 bp):
TCAGTCATTTTACCCTATAGGGGTATT
Found at i:77776532 original size:42 final size:44
Alignment explanation
Indices: 77776424--77776532 Score: 123
Period size: 42 Copynumber: 2.5 Consensus size: 44
77776414 TTCTGTGTAC
* * * * *
77776424 GACCACGTCTGGGATGTTTGCATCGATCTGTGATTTACGTGTAA
1 GACCACGTCTGGGACGTTGGCATCGATATGTGATTTACATATAA
* * * *
77776468 GACCATGTCTGGGACATCGGCATC-ATATTTGATTT-CATATAA
1 GACCACGTCTGGGACGTTGGCATCGATATGTGATTTACATATAA
77776510 GACCACGTCTGGGACGTTGGCAT
1 GACCACGTCTGGGACGTTGGCAT
77776533 TGTACAAGCT
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 25 0.47
43 9 0.17
44 19 0.36
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (44 bp):
GACCACGTCTGGGACGTTGGCATCGATATGTGATTTACATATAA
Found at i:77779065 original size:42 final size:42
Alignment explanation
Indices: 77779019--77779110 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
77779009 AGTCATGGGT
* * *
77779019 GTGTGTCTCAGCCGCGTGAGCTACATTGCCTAGAACAGGGGC
1 GTGTGTCTCAGCCGCGAGAGCTACATGGCCTAGAACACGGGC
* * *
77779061 GTGTGTCGCAGCCGTGAGAGCTACATGGCCTAGAACACGGGT
1 GTGTGTCTCAGCCGCGAGAGCTACATGGCCTAGAACACGGGC
77779103 GTGTGTCT
1 GTGTGTCT
77779111 TGTCCGTATG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.18, C:0.24, G:0.35, T:0.23
Consensus pattern (42 bp):
GTGTGTCTCAGCCGCGAGAGCTACATGGCCTAGAACACGGGC
Found at i:77780623 original size:26 final size:27
Alignment explanation
Indices: 77780593--77780651 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 27
77780583 TCAAATATAA
*
77780593 TCATTCATCTCAT-AGGGGCATAATTG
1 TCATTCATCTCATCAGGGGCATAATAG
** *
77780619 TCATTTTTTTCATGCAGGGGCATAATAG
1 TCATTCATCTCAT-CAGGGGCATAATAG
77780647 TCATT
1 TCATT
77780652 TTATCAGTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 10 0.37
28 17 0.63
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (27 bp):
TCATTCATCTCATCAGGGGCATAATAG
Found at i:77780664 original size:27 final size:28
Alignment explanation
Indices: 77780605--77780665 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
77780595 ATTCATCTCA
* *
77780605 TAGGGGCATAATTGTCATTTTTTTCATG
1 TAGGGGCATAATAGTCATTTTTATCATG
*
77780633 CAGGGGCATAATAGTCA-TTTTATCA-G
1 TAGGGGCATAATAGTCATTTTTATCATG
77780659 TTAGGGG
1 -TAGGGG
77780666 GTCTAGGTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 1 0.04
27 12 0.43
28 15 0.54
ACGTcount: A:0.25, C:0.11, G:0.26, T:0.38
Consensus pattern (28 bp):
TAGGGGCATAATAGTCATTTTTATCATG
Found at i:77780907 original size:17 final size:18
Alignment explanation
Indices: 77780885--77780918 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
77780875 TTTAACCGTA
77780885 TGGGGCCCACA-GGCTCG
1 TGGGGCCCACATGGCTCG
77780902 TGGGGCCCACATGGCTC
1 TGGGGCCCACATGGCTC
77780919 AGTTTGGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.12, C:0.35, G:0.38, T:0.15
Consensus pattern (18 bp):
TGGGGCCCACATGGCTCG
Found at i:77789486 original size:43 final size:43
Alignment explanation
Indices: 77789438--77789526 Score: 160
Period size: 43 Copynumber: 2.1 Consensus size: 43
77789428 TTCAAAGAAG
*
77789438 TTAATACAGTTAATGCTAGGGTTGCCTCCCGAGAGGCGCTTAT
1 TTAATACAGTTAATGCTAGGGTTGCCTCCCGAGAAGCGCTTAT
*
77789481 TTAATACAGTTAGTGCTAGGGTTGCCTCCCGAGAAGCGCTTAT
1 TTAATACAGTTAATGCTAGGGTTGCCTCCCGAGAAGCGCTTAT
77789524 TTA
1 TTA
77789527 TAGTCTAAGC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (43 bp):
TTAATACAGTTAATGCTAGGGTTGCCTCCCGAGAAGCGCTTAT
Found at i:77800242 original size:17 final size:17
Alignment explanation
Indices: 77800220--77800259 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
77800210 TATTACCAAT
77800220 CAATACACAACATTTAA
1 CAATACACAACATTTAA
*
77800237 CAATACACATCATTTAA
1 CAATACACAACATTTAA
77800254 C-ATACA
1 CAATACA
77800260 TAACTCATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (17 bp):
CAATACACAACATTTAA
Found at i:77811942 original size:46 final size:45
Alignment explanation
Indices: 77811890--77812064 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
77811880 TGGTTGAGCA
*
77811890 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTACGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * * *
77811936 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G
* *
77811981 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * *
77812029 CCCGAGCTCGTTGAATTGAGTCCGAGTTCACTTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
77812065 GGCGGGTTAC
Statistics
Matches: 105, Mismatches: 15, Indels: 19
0.76 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 57 0.54
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATG
Found at i:77812048 original size:93 final size:93
Alignment explanation
Indices: 77811887--77812057 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
77811877 GGATGGTTGA
* * * ** *
77811887 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAAT
77811952 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
77811980 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAAT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAAT
77812045 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
77812058 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAAT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:77817807 original size:66 final size:67
Alignment explanation
Indices: 77817679--77817807 Score: 170
Period size: 67 Copynumber: 1.9 Consensus size: 67
77817669 TACTATGTGT
* ** * *
77817679 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAA
1 ACACCATGTAGACAAGAGAGCTACGAGATATAACTAGCTAGGTCACATGCGTGGTACCAAGTGAA
77817744 GG
66 GG
* * * *
77817746 ACACTATGTAGACAAGAGAGCTATGAGATA-AACTAGCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGACAAGAGAGCTACGAGATATAACTAGCTAGGTCACATGCGTGGTACCAAGTG
77817808 TTCACCATAT
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
66 26 0.49
67 27 0.51
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (67 bp):
ACACCATGTAGACAAGAGAGCTACGAGATATAACTAGCTAGGTCACATGCGTGGTACCAAGTGAA
GG
Found at i:77822040 original size:27 final size:28
Alignment explanation
Indices: 77822010--77822066 Score: 64
Period size: 29 Copynumber: 2.0 Consensus size: 28
77822000 ATTTTTGATG
77822010 AAATAAGCTATTTG-GG-CTAATTTGTGA
1 AAATAAGCT-TTTGAGGACTAATTTGTGA
* *
77822037 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATAAGCTTTTG-AGGACTAATTTGTGA
77822066 A
1 A
77822067 TTTAACATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
26 4 0.16
27 7 0.28
28 2 0.08
29 12 0.48
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (28 bp):
AAATAAGCTTTTGAGGACTAATTTGTGA
Found at i:77827408 original size:34 final size:32
Alignment explanation
Indices: 77827354--77827442 Score: 90
Period size: 33 Copynumber: 2.7 Consensus size: 32
77827344 TAGGCATTTA
*
77827354 TGATACTGTACTGATATGGGCTAACGCCCACAC
1 TGATACTATACTGATATGGGCTAA-GCCCACAC
* *
77827387 TGATACTAATACTG-TATTGGGCTAAGGCTACAC
1 TGATACT-ATACTGATA-TGGGCTAAGCCCACAC
* *
77827420 TGATATTACGACTGATATGGGCT
1 TGATACTA-TACTGATATGGGCT
77827443 TAGGCCCAGT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
32 1 0.02
33 31 0.66
34 15 0.32
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (32 bp):
TGATACTATACTGATATGGGCTAAGCCCACAC
Found at i:77827441 original size:33 final size:33
Alignment explanation
Indices: 77827363--77827448 Score: 93
Period size: 33 Copynumber: 2.6 Consensus size: 33
77827353 ATGATACTGT
* *
77827363 ACTGATATGGGCTAACGCCCACACTGATACTAAT
1 ACTGATATGGGCTAA-GGCCACACTGATACTAAG
* * *
77827397 ACTG-TATTGGGCTAAGGCTACACTGATATTACG
1 ACTGATA-TGGGCTAAGGCCACACTGATACTAAG
*
77827430 ACTGATATGGGCTTAGGCC
1 ACTGATATGGGCTAAGGCC
77827449 CAGTTGTGTA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
33 29 0.67
34 14 0.33
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (33 bp):
ACTGATATGGGCTAAGGCCACACTGATACTAAG
Found at i:77827859 original size:38 final size:38
Alignment explanation
Indices: 77827808--77827883 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
77827798 TTTTCAAAAT
77827808 GTAGTAACAATATTAGTAAGAGATATGGTTTTGCTTAA
1 GTAGTAACAATATTAGTAAGAGATATGGTTTTGCTTAA
* *
77827846 GTAGTAACAATATTAGTAAGAGTTATGGTTTTTCTTAA
1 GTAGTAACAATATTAGTAAGAGATATGGTTTTGCTTAA
77827884 CAATCCTGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.36, C:0.05, G:0.20, T:0.39
Consensus pattern (38 bp):
GTAGTAACAATATTAGTAAGAGATATGGTTTTGCTTAA
Found at i:77834260 original size:6 final size:6
Alignment explanation
Indices: 77834249--77834282 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
77834239 GTGAAATTAA
77834249 TAAAAT TAAAAT TAAAAT TAAAA- TAAAAT TAAAA
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAA
77834283 ATTATCAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
TAAAAT
Found at i:77834277 original size:11 final size:11
Alignment explanation
Indices: 77834247--77834282 Score: 63
Period size: 11 Copynumber: 3.2 Consensus size: 11
77834237 AGGTGAAATT
77834247 AATAAAATTAA
1 AATAAAATTAA
77834258 AATTAAAATTAA
1 AA-TAAAATTAA
77834270 AATAAAATTAA
1 AATAAAATTAA
77834281 AA
1 AA
77834283 ATTATCAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 13 0.54
12 11 0.46
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
AATAAAATTAA
Found at i:77834283 original size:12 final size:12
Alignment explanation
Indices: 77834247--77834284 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
77834237 AGGTGAAATT
77834247 AATAAAATTAAA
1 AATAAAATTAAA
*
77834259 ATTAAAATT-AA
1 AATAAAATTAAA
77834270 AATAAAATTAAA
1 AATAAAATTAAA
77834282 AAT
1 AAT
77834285 TATCAATGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
AATAAAATTAAA
Found at i:77834286 original size:18 final size:18
Alignment explanation
Indices: 77834249--77834282 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
77834239 GTGAAATTAA
77834249 TAAAATTAAAATTAAAAT
1 TAAAATTAAAATTAAAAT
77834267 TAAAA-TAAAATTAAAA
1 TAAAATTAAAATTAAAA
77834283 ATTATCAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAATTAAAATTAAAAT
Found at i:77836305 original size:55 final size:55
Alignment explanation
Indices: 77836171--77836315 Score: 155
Period size: 55 Copynumber: 2.6 Consensus size: 55
77836161 TATGTAGTCC
* * ** *
77836171 CACGCCCGTGTTAATCTAACAGGTTTGACCACGGTTTCTTGGTACGGGAGTGTCG
1 CACGCCCGTGTTAATTTGACAGGTTTGACCACGGTTTCAGGGCACGGGAGTGTCG
* * * * *
77836226 CACGCCCGTGTTAATTTGATAGGTTTGGCCACGGTTTCAGGGCATGGGCGTGTTG
1 CACGCCCGTGTTAATTTGACAGGTTTGACCACGGTTTCAGGGCACGGGAGTGTCG
** * * *
77836281 CACGCCCGTGTTGTTTTGGCAGGTTCGCCCACGGT
1 CACGCCCGTGTTAATTTGACAGGTTTGACCACGGT
77836316 CATGTTGCAC
Statistics
Matches: 74, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 74 1.00
ACGTcount: A:0.14, C:0.24, G:0.32, T:0.30
Consensus pattern (55 bp):
CACGCCCGTGTTAATTTGACAGGTTTGACCACGGTTTCAGGGCACGGGAGTGTCG
Found at i:77845769 original size:49 final size:49
Alignment explanation
Indices: 77845709--77846355 Score: 1069
Period size: 49 Copynumber: 13.6 Consensus size: 49
77845699 GATAATTGTG
*
77845709 ATGTG-AA-TGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77845756 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77845805 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77845854 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77845901 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77845950 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCTATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77845999 ATGTGAAAGTG--TATATATGTGATAAGGCCTAAT-GCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77846045 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77846092 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77846139 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77846188 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77846237 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
77846284 ATGT-AAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77846330 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
77846356 TCCCGAAGGG
Statistics
Matches: 574, Mismatches: 16, Indels: 20
0.94 0.03 0.03
Matches are distributed among these distances:
46 82 0.14
47 197 0.34
48 3 0.01
49 292 0.51
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:77845860 original size:145 final size:143
Alignment explanation
Indices: 77845709--77846355 Score: 1081
Period size: 145 Copynumber: 4.5 Consensus size: 143
77845699 GATAATTGTG
* * *
77845709 ATGTGAATGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
77845774 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
77845839 TGGCCGATGTGATGA
129 TGGCCGATGTGATGA
77845854 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
77845919 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
*
77845984 TGGCCTATGTGATGA
129 TGGCCGATGTGATGA
77845999 ATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
77846061 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
77846126 GCCGATGTGATGA
131 GCCGATGTGATGA
77846139 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
77846204 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
77846269 TGGCCGATGTGATGA
129 TGGCCGATGTGATGA
* * * * * * *
77846284 ATGT-AAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
77846346 ATGTGATAAG
66 ATGTGATAAG
77846356 TCCCGAAGGG
Statistics
Matches: 482, Mismatches: 15, Indels: 15
0.94 0.03 0.03
Matches are distributed among these distances:
140 56 0.12
141 1 0.00
142 112 0.23
143 24 0.05
144 30 0.06
145 259 0.54
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:77846123 original size:238 final size:239
Alignment explanation
Indices: 77845709--77846355 Score: 1122
Period size: 238 Copynumber: 2.7 Consensus size: 239
77845699 GATAATTGTG
*
77845709 ATGTG-AA-TGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
77845772 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
77845837 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
127 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
77845902 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
192 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77845950 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCTATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
77846015 ATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
77846079 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
131 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
77846144 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
196 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77846188 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * *
77846253 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGT-AAAGTGTATATATGTGACAGGGCCGAGTG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* * * *
77846317 GCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
131 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
77846356 TCCCGAAGGG
Statistics
Matches: 389, Mismatches: 14, Indels: 9
0.94 0.03 0.02
Matches are distributed among these distances:
238 270 0.69
239 17 0.04
240 24 0.06
241 27 0.07
242 2 0.01
243 49 0.13
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (239 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:77848632 original size:40 final size:40
Alignment explanation
Indices: 77848578--77848942 Score: 500
Period size: 40 Copynumber: 9.2 Consensus size: 40
77848568 AAGGTCTCGA
77848578 TGATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
* *
77848617 TGATGTACCCAGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
* *
77848657 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
* *
77848697 TGATGTATCCGGACTAATTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
* *
77848737 TGATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
*
77848777 TGATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
* * *
77848817 TGATGTATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
* * * * * *
77848857 TAATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGG
1 TGATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAG
* * * * *
77848897 TGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
77848937 TGATGT
1 TGATGT
77848943 GTATTCGGGC
Statistics
Matches: 288, Mismatches: 35, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
39 6 0.02
40 280 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
Found at i:77852314 original size:47 final size:47
Alignment explanation
Indices: 77852262--77852718 Score: 689
Period size: 47 Copynumber: 9.6 Consensus size: 47
77852252 GATAATTGTG
* *
77852262 ATGTGAATGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77852309 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77852358 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77852407 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77852454 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77852503 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
77852552 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
77852599 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
77852646 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
77852693 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTATATATATGTGATAAG
77852719 TCCCGAAGGG
Statistics
Matches: 387, Mismatches: 19, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 197 0.51
49 190 0.49
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:77852322 original size:49 final size:49
Alignment explanation
Indices: 77852262--77852718 Score: 740
Period size: 49 Copynumber: 9.6 Consensus size: 49
77852252 GATAATTGTG
*
77852262 ATGTG-AA-TGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77852309 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77852358 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77852407 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77852454 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77852503 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77852552 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
77852599 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
77852646 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
77852693 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
77852719 TCCCGAAGGG
Statistics
Matches: 390, Mismatches: 14, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
47 190 0.49
48 3 0.01
49 197 0.51
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:77852413 original size:145 final size:145
Alignment explanation
Indices: 77852262--77852718 Score: 769
Period size: 145 Copynumber: 3.2 Consensus size: 145
77852252 GATAATTGTG
* * *
77852262 ATGTGAATGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
77852327 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
77852392 TGGCCGATGTGATGA
131 TGGCCGATGTGATGA
77852407 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
77852472 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
77852537 TGGCCGATGTGATGA
131 TGGCCGATGTGATGA
*
77852552 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * *
77852615 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
* * *
77852678 TGGCCAACGTGATGG
131 TGGCCGATGTGATGA
*
77852693 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
77852719 TCCCGAAGGG
Statistics
Matches: 299, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
141 54 0.18
143 46 0.15
145 199 0.67
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (145 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
TGGCCGATGTGATGA
Found at i:77856270 original size:47 final size:46
Alignment explanation
Indices: 77856159--77856271 Score: 113
Period size: 47 Copynumber: 2.4 Consensus size: 46
77856149 ATATTTGTGT
* * * *
77856159 GCTAGTGTAAGACATGTCTGGGACATGCATCGGTCATATTATGAGA
1 GCTAGTGTAAGACATGTCTGAGACATGCATAGGTCATATGACGAGA
* *
77856205 GCCAGAGTAAGACCATGTCTGAGACATGGCATAGG-CAT-TGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGAGACAT-GCATAGGTCATAT--GACGAGA
*
77856253 GCTAGTGTAAGAAATGTCT
1 GCTAGTGTAAGACATGTCT
77856272 AGGACGTGCA
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
46 11 0.20
47 22 0.41
48 21 0.39
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGAGACATGCATAGGTCATATGACGAGA
Found at i:77863161 original size:13 final size:13
Alignment explanation
Indices: 77863143--77863167 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77863133 AGTAAGTGAT
77863143 TTTGATGATTTTC
1 TTTGATGATTTTC
77863156 TTTGATGATTTT
1 TTTGATGATTTT
77863168 TGCACTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTTGATGATTTTC
Found at i:77864073 original size:50 final size:49
Alignment explanation
Indices: 77864005--77864133 Score: 147
Period size: 49 Copynumber: 2.6 Consensus size: 49
77863995 TCAGATGTGT
* *
77864005 TAGTATAAAACCATGTCTGGGACATGGCATC-AGCAC-GGATATGT-GAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-CTGGAT-T-TCGAGAGC
* * *
77864055 TAGTGTAAGACCATGTCTGGGACATGGCATCGACCTTGATTTCGATAGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGACCTGGATTTCGAGAGC
*
77864104 TAGTGTAAGACCATGTTTGGGACATGGCAT
1 TAGTGTAAGACCATGTCTGGGACATGGCAT
77864134 TGGAATTATA
Statistics
Matches: 70, Mismatches: 6, Indels: 7
0.84 0.07 0.08
Matches are distributed among these distances:
48 1 0.01
49 35 0.50
50 33 0.47
51 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (49 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGACCTGGATTTCGAGAGC
Found at i:77878856 original size:28 final size:28
Alignment explanation
Indices: 77878825--77878896 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 28
77878815 TCGATATTTT
* *
77878825 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCCCAATATCTC
*
77878853 GCACAGC-AAGTGCCATTCCCAATATTTC
1 GCACA-CTAAGTGCCATTCCCAATATCTC
* * *
77878881 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
77878897 ATTTGATTTC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
27 1 0.03
28 34 0.94
29 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCCCAATATCTC
Found at i:77892311 original size:24 final size:25
Alignment explanation
Indices: 77892279--77892330 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
77892269 GCCTAGCCTC
*
77892279 TTTTAAT-AACTAGGGCAAAGCTCT
1 TTTTAATAAACTAGGGCAAAGCCCT
* *
77892303 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
77892328 TTT
1 TTT
77892331 CGGTAAACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:77892319 original size:25 final size:25
Alignment explanation
Indices: 77892286--77892355 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
77892276 CTCTTTTAAT
* *
77892286 AACTAGGGCAAAGCTCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
* *
77892311 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
* * *
77892336 AACTAGAGCATAGCACTTTT
1 AACTAGGGCAAAGCCCTTTT
77892356 AGCACTTCCT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:77892532 original size:27 final size:27
Alignment explanation
Indices: 77892502--77892633 Score: 104
Period size: 27 Copynumber: 4.9 Consensus size: 27
77892492 GGGGCAAAAT
* *
77892502 GGTAATTTTACCCCACAAGGTTATCTC
1 GGTAATTTTACCCTACAAGGGTATCTC
* * *
77892529 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATCTC
* *
77892556 GGT-ATTTCTACCCTACAAGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATCTC
* * * * *
77892583 GGTGATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATCTC
* * * *
77892610 GGTAAATGTACCCCACAGGGGTAT
1 GGTAATTTTACCCTACAAGGGTAT
77892634 GTTAGTAATT
Statistics
Matches: 86, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 3 0.03
27 80 0.93
28 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.33
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATCTC
Found at i:77892568 original size:54 final size:53
Alignment explanation
Indices: 77892506--77892633 Score: 157
Period size: 54 Copynumber: 2.4 Consensus size: 53
77892496 CAAAATGGTA
*
77892506 ATTTTACCCCACAAGGTTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGT
1 ATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * * * *
77892559 ATTTCTACCCTACAAGGGTATTTTGGTGATTCTACCCTATAGGGGTATTTCGGT
1 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * *
77892613 AAATGTACCCCACAGGGGTAT
1 -ATTTTACCCCACAAGGGTAT
77892634 GTTAGTAATT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
53 4 0.06
54 57 0.90
55 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (53 bp):
ATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGT
Found at i:77892685 original size:27 final size:27
Alignment explanation
Indices: 77892625--77892992 Score: 273
Period size: 27 Copynumber: 13.7 Consensus size: 27
77892615 ATGTACCCCA
* * *
77892625 CAGGGGTATGTTAGTAATTTT-CAAAG
1 CAGGGGTATTTTGGTAATTTTACAAAC
** *
77892651 CAATGGTATTTTGGTAATTTAACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * **
77892678 TAGGGGTATTTTGGTAACTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
77892705 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* **
77892732 CAGGGGCATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
77892759 TAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* **
77892786 CAGGGGTATTTTGGTAACTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
** *
77892813 CAAAGGTATTTTGGTAATTTTACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * *
77892840 C-GAAGGTATTTTAGTAATTTTACAATC
1 CAG-GGGTATTTTGGTAATTTTACAAAC
* * * *
77892867 GA-TGGTATTTCGGTAATTTTACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
** *
77892893 C-GAGGGTATTTCAGTAATTTTACAATC
1 CAG-GGGTATTTTGGTAATTTTACAAAC
* * * ** *
77892920 GA-TGGTATGTCAGTAATTTTACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * *
77892946 C-GAGGATATTTGGGTAATTTTATAAAC
1 CAG-GGGTATTTTGGTAATTTTACAAAC
*
77892973 C-GGGGTTACTTTGGTAATTT
1 CAGGGG-TATTTTGGTAATTT
77892993 GGTAAATTAA
Statistics
Matches: 264, Mismatches: 69, Indels: 17
0.75 0.20 0.05
Matches are distributed among these distances:
26 57 0.22
27 207 0.78
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:77892720 original size:54 final size:54
Alignment explanation
Indices: 77892625--77892891 Score: 319
Period size: 54 Copynumber: 5.0 Consensus size: 54
77892615 ATGTACCCCA
* * * * *
77892625 CAGGGGTATGTTAGTAA-TTT-TCAAAGCAATGGTATTTTGGTAATTTAACAAAC
1 CAGGGGTATTTTGGTAACTTTGT-AAACCAAGGGTATTTTGGTAATTTTACAAAC
*
77892678 TAGGGGTATTTTGGTAACTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAACTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
* * *
77892732 CAGGGGCATTTTGGTAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAACTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
* *
77892786 CAGGGGTATTTTGGTAACTTTGTAAACCAAAGGTATTTTGGTAATTTTACAAAT
1 CAGGGGTATTTTGGTAACTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
* * * * * *
77892840 C-GAAGGTATTTTAGTAA-TTT-TACAATCGATGGTATTTCGGTAATTTTACAAA
1 CAG-GGGTATTTTGGTAACTTTGTA-AACCAAGGGTATTTTGGTAATTTTACAAA
77892892 TCGAGGGTAT
Statistics
Matches: 189, Mismatches: 21, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
52 2 0.01
53 43 0.23
54 143 0.76
55 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAACTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
Found at i:77904126 original size:27 final size:27
Alignment explanation
Indices: 77904093--77904267 Score: 199
Period size: 27 Copynumber: 6.5 Consensus size: 27
77904083 AAATTGTACA
*
77904093 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTT
* * *
77904120 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGTT
* **
77904147 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTT
* *
77904174 GCACTAAGTGTGCGAGTTGACTATGTA
1 GCACTAAGTGTGCGAATTGACTATGTT
* *
77904201 GCACTAAGTGTGCGATTTGATTATG-T
1 GCACTAAGTGTGCGAATTGACTATGTT
* * * *
77904227 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTT
*
77904254 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
77904268 GACTTAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
26 23 0.18
27 104 0.82
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTT
Found at i:77904153 original size:54 final size:54
Alignment explanation
Indices: 77904092--77904267 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
77904082 TAAATTGTAC
**
77904092 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATG-TGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
77904147 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATG-TGCACTAAGTGTGCGAGTTGAATATGAT
* *
77904200 AGCACTAAGTGTGCGATTTGATTATGTGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTGCACTAAGTGTGCGAGTTGAATATGAT
*
77904253 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77904268 GACTTAATAT
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 39 0.37
54 67 0.63
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:77917970 original size:50 final size:47
Alignment explanation
Indices: 77917897--77918433 Score: 316
Period size: 50 Copynumber: 11.1 Consensus size: 47
77917887 ACTCCCATCC
77917897 CATCACATTGGCCATTTCGGCCTTATCACATATAATACACTTTCACAATT
1 CATCACATTGGCCA-TTCGGCCTTATCACA-ATAATACACTTTCAC-ATT
* * *
77917947 CATCCACGTTGGCCATTCGGCCTTATCTC-ATAATGCA-TGTTCA-ATT
1 CAT-CACATTGGCCATTCGGCCTTATCACAATAATACACT-TTCACATT
* *
77917993 CATCAC-TTGGCCATTCGGCCGGTTATCACACAT-ACACATGTTATCACATT
1 CATCACATTGGCCATTCGGCC--TTATCACA-ATAATACA-CTT-TCACATT
* * *
77918043 CATCACATTGGCCATTC-GCCTTACTCACACAT-A-A-A-GTTCCCCTT
1 CATCACATTGGCCATTCGGCCTTA-TCACA-ATAATACACTTTCACATT
* *
77918087 CATCACATTGGCCATTCGGCCTTATCTCAGATATATGGCA-TGTTCACATT
1 CATCACATTGGCCATTCGGCCTTATCACA-ATA-AT-ACACT-TTCACATT
*
77918137 CAAGTCATCCATTGG-CA-T-GG-CTTATCAC-A-CATACACTGTTCAACATT
1 C-A-TCA--CATTGGCCATTCGGCCTTATCACAATAATACACT-TTC-ACATT
*
77918184 CATACAACTTTGGCCATTCGGCCTTATCAC-ATAATAACACTTTCACATT
1 CAT-C-ACATTGGCCATTCGGCCTTATCACAATAAT-ACACTTTCACATT
*
77918233 CATACACATTGGCCATGTC-GCCTTATCAC-ATTATACA-TCTTCAC-TT
1 CAT-CACATTGGCCAT-TCGGCCTTATCACAATAATACACT-TTCACATT
* * *
77918279 CATCACATCGGCCATGTAGGCCCTTATCACATATTATTAACACTTTCACA-T
1 CATCACATTGGCCAT-TCGG-CCTTATCACA-A-TAAT-ACACTTTCACATT
* *
77918330 CATCAACAGTCGG-CATTGAGGCCTTATCACATAATAAATACAC-TTCACATT
1 CATC-ACA-TTGGCCATT-CGGCCTTATCAC--AAT-AATACACTTTCACATT
* * * *
77918381 CATCACAGTCGGCTATTAGGCCTTATCACAATCTATACACTTTCA-ATT
1 CATCACA-TTGGCCATTCGGCCTTATCACAAT-AATACACTTTCACATT
*
77918429 TATCA
1 CATCA
77918434 AATATACTTC
Statistics
Matches: 404, Mismatches: 31, Indels: 106
0.75 0.06 0.20
Matches are distributed among these distances:
44 42 0.10
45 31 0.08
46 31 0.08
47 30 0.07
48 61 0.15
49 40 0.10
50 75 0.19
51 64 0.16
52 17 0.04
53 7 0.02
54 6 0.01
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (47 bp):
CATCACATTGGCCATTCGGCCTTATCACAATAATACACTTTCACATT
Found at i:77918098 original size:95 final size:95
Alignment explanation
Indices: 77917897--77918112 Score: 239
Period size: 95 Copynumber: 2.3 Consensus size: 95
77917887 ACTCCCATCC
* * *
77917897 CATCACATTGGCCATTTCGGCCTTATCACATATAATACACTTTCACAATTCATCCACGTTGGCCA
1 CATCACATTGGCCA-TTCGGCCTTATCACACATAACACACTTTCACAATTCATCCACATTGGCCA
* * *
77917962 TTCGGCCTTATCTCATAATGCATGTTCAATT
65 TTCGGCCTTATCTCACAATGAAAGTTCAATT
*
77917993 CATCAC-TTGGCCATTCGGCCGGTTATCACACAT-ACACATGTTATCAC-ATTCAT-CACATTGG
1 CATCACATTGGCCATTCGGCC--TTATCACACATAACACA-CTT-TCACAATTCATCCACATTGG
**
77918054 CCATTC-GCCTTA-CTCACACAT-AAAGTTCCCCTT
62 CCATTCGGCCTTATCTCACA-ATGAAAGTT-CAATT
77918087 CATCACATTGGCCATTCGGCCTTATC
1 CATCACATTGGCCATTCGGCCTTATC
77918113 TCAGATATAT
Statistics
Matches: 104, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
93 14 0.13
94 24 0.23
95 38 0.37
96 24 0.23
97 4 0.04
ACGTcount: A:0.25, C:0.31, G:0.12, T:0.32
Consensus pattern (95 bp):
CATCACATTGGCCATTCGGCCTTATCACACATAACACACTTTCACAATTCATCCACATTGGCCAT
TCGGCCTTATCTCACAATGAAAGTTCAATT
Found at i:77918170 original size:143 final size:141
Alignment explanation
Indices: 77917901--77918284 Score: 371
Period size: 143 Copynumber: 2.7 Consensus size: 141
77917891 CCATCCCATC
* * *
77917901 ACATTGGCCATTTCGGCCTTATCACAT-ATAATACACTTTCACAATTCATCCACGTTGGCCATTC
1 ACATTGGCCA-TTCGGCCTTATCACATAAT-A-ACACGTTCAC-ATTCATACACATTGGCCATTC
77917965 GGCCTTATCTCATAATGCATGTTCAATTCATCACTTGGCCATTCGGCCGGTTATCACACATACAC
62 GGCCTTATCTCATAATGCATGTTCAATTCATCAC-T-GCCATTCGGCCGGTTATCACACATACAC
77918030 ATGTT-ATCACATTCAT-C-
125 -TGTTCA--ACATTCATACA
* * *
77918047 ACATTGGCCATTC-GCCTTACTCACA-CATAA-A-GTTCCCCTTCAT-CACATTGGCCATTCGGC
1 ACATTGGCCATTCGGCCTTA-TCACATAATAACACGTTCACATTCATACACATTGGCCATTCGGC
*
77918107 CTTATCTCAGATATATGGCATGTTCACATTCAAGTCA-T-CCATT-GGCATGGCTTATCACACAT
65 CTTATCTC--ATA-AT-GCATGTTCA-ATTC-A-TCACTGCCATTCGGC-CGG-TTATCACACAT
77918169 ACACTGTTCAACATTCATACA
121 ACACTGTTCAACATTCATACA
* *
77918190 ACTTTGGCCATTCGGCCTTATCACATAATAACACTTTCACATTCATACACATTGGCCATGTC-GC
1 ACATTGGCCATTCGGCCTTATCACATAATAACACGTTCACATTCATACACATTGGCCAT-TCGGC
* * * * *
77918254 CTTATCACATTATACATCTTCACTTCATCAC
65 CTTATCTCATAATGCATGTTCAATTCATCAC
77918285 ATCGGCCATG
Statistics
Matches: 202, Mismatches: 15, Indels: 47
0.77 0.06 0.18
Matches are distributed among these distances:
139 24 0.12
140 8 0.04
141 19 0.09
142 18 0.09
143 50 0.25
144 24 0.12
145 14 0.07
146 22 0.11
147 21 0.10
148 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (141 bp):
ACATTGGCCATTCGGCCTTATCACATAATAACACGTTCACATTCATACACATTGGCCATTCGGCC
TTATCTCATAATGCATGTTCAATTCATCACTGCCATTCGGCCGGTTATCACACATACACTGTTCA
ACATTCATACA
Found at i:77921092 original size:37 final size:38
Alignment explanation
Indices: 77921026--77921119 Score: 113
Period size: 37 Copynumber: 2.4 Consensus size: 38
77921016 CGTAGCCCGG
*
77921026 ACATCACTAGCAGAATGCTCTTCGGACTT-ACC-C-GA
1 ACATCACTAGCAGAATGATCTTCGGACTTAACCGCGGA
*
77921061 TACATCACTAGCACGATTGATCTTCGGACTTAACCGCGGA
1 -ACATCACTAGCA-GAATGATCTTCGGACTTAACCGCGGA
77921101 ACATCACTAAGCATGAATG
1 ACATCACT-AGCA-GAATG
77921120 CTGACTTTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
36 12 0.24
37 15 0.31
38 3 0.06
39 9 0.18
40 10 0.20
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (38 bp):
ACATCACTAGCAGAATGATCTTCGGACTTAACCGCGGA
Found at i:77921261 original size:39 final size:39
Alignment explanation
Indices: 77921018--77921266 Score: 204
Period size: 40 Copynumber: 6.4 Consensus size: 39
77921008 AACTTGGTCG
77921018 TAGCCCGG--ACATCACTAGCA-GAATGCTCTTCGGACT
1 TAGCCCGGATACATCACTAGCATGAATGCTCTTCGGACT
* * *
77921054 TA-CCC-GATACATCACTAGCACGATTGATCTTCGGACT
1 TAGCCCGGATACATCACTAGCATGAATGCTCTTCGGACT
* *
77921091 TAACCGCGGA-ACATCACTAAGCATGAATGCTGACTTTGGGAC-
1 TAGCC-CGGATACATCACT-AGCATGAATGCT--C-TTCGGACT
77921133 TAG-CC-GAT-CAATCACTAGCAAATGAATGCTCTTCGGACT
1 TAGCCCGGATAC-ATCACTAGC--ATGAATGCTCTTCGGACT
*
77921172 TAGACCCGGGATCCATCACTAGCCATGAA-GCT-TTCTGGAAACT
1 TAG-CCC-GGATACATCACTAG-CATGAATGCTCTTC-GG--ACT
77921215 TAG-CCGGATACATCACTAGCATGAA-GCTCTTCGGGACT
1 TAGCCCGGATACATCACTAGCATGAATGCTCTTC-GGACT
77921253 TAGCCCGGAT-CATC
1 TAGCCCGGATACATC
77921267 GTCGAGACCT
Statistics
Matches: 177, Mismatches: 10, Indels: 50
0.75 0.04 0.21
Matches are distributed among these distances:
34 1 0.01
35 3 0.02
36 14 0.08
37 16 0.09
38 18 0.10
39 34 0.19
40 39 0.22
41 19 0.11
42 8 0.05
43 23 0.13
44 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TAGCCCGGATACATCACTAGCATGAATGCTCTTCGGACT
Found at i:77921347 original size:39 final size:39
Alignment explanation
Indices: 77921299--77921374 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
77921289 GTAAAATTCC
* *
77921299 ACCAAAGCC-AGCGAATTTTATCCGGACATAAATCTCTGT
1 ACCAAAGCCAAGCG-ATCTTACCCGGACATAAATCTCTGT
* * *
77921338 ACCATAGCCAATCGGTCTTACCCGGACATAAATCTCT
1 ACCAAAGCCAAGCGATCTTACCCGGACATAAATCTCT
77921375 TCATAAGTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
39 28 0.90
40 3 0.10
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (39 bp):
ACCAAAGCCAAGCGATCTTACCCGGACATAAATCTCTGT
Found at i:77924901 original size:54 final size:54
Alignment explanation
Indices: 77924797--77924906 Score: 168
Period size: 54 Copynumber: 2.0 Consensus size: 54
77924787 AGGAAGCGTC
*
77924797 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
77924851 CTGGTGGCTTTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
77924905 CT
1 CT
77924907 AGCAGCCATG
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:77924903 original size:27 final size:27
Alignment explanation
Indices: 77924797--77924903 Score: 137
Period size: 27 Copynumber: 3.9 Consensus size: 27
77924787 AGGAAGCGTC
*
77924797 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
77924824 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
*
77924851 CTGGTGGCTTTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
77924879 CTGGTGACTCTGTCACATTATCTGT
1 CTGGTGGCTCTGCCACATTATCTGT
77924904 TCTAGCAGCC
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
26 2 0.03
27 53 0.75
28 16 0.23
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:77926381 original size:43 final size:42
Alignment explanation
Indices: 77926328--77926442 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 42
77926318 GGTGTGATTT
* *
77926328 CATGTAAGACCATGTCTGGGACATTGGCATCGATATGAGATTA
1 CATGCAAGACCATGTCTGGGACA-TGGCATCGATATGAGATAA
* * * *
77926371 CGTGCAAGACCCTGTCTGGGACAGAGGCATCGATATGTGATAA
1 CATGCAAGACCATGTCTGGGACA-TGGCATCGATATGAGATAA
* * *
77926414 CATGTAAGACCATATCTGGGATATGGCAT
1 CATGCAAGACCATGTCTGGGACATGGCAT
77926443 TGTATGTGAT
Statistics
Matches: 59, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
42 5 0.08
43 54 0.92
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (42 bp):
CATGCAAGACCATGTCTGGGACATGGCATCGATATGAGATAA
Found at i:77936627 original size:43 final size:42
Alignment explanation
Indices: 77936537--77936660 Score: 144
Period size: 43 Copynumber: 2.9 Consensus size: 42
77936527 TGTGATTTTG
* **
77936537 TGTAAGACCATGTCTGGGACATTGGCATTGATATGAGACT-ATG
1 TGTAAGACCATGTCTGGGACA-TGGCATTGATATGTGA-TAACA
* *
77936580 TGTAAGACCCTGTCTGGGACAGAGGCATTGATATGTGATAACA
1 TGTAAGACCATGTCTGGGACA-TGGCATTGATATGTGATAACA
* *
77936623 TGTAAGACCATATCTGGGATATGGCATTG-TATGTGATA
1 TGTAAGACCATGTCTGGGACATGGCATTGATATGTGATA
77936661 TATGTGTTTT
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 9 0.13
42 8 0.11
43 53 0.76
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATGGCATTGATATGTGATAACA
Found at i:77952136 original size:42 final size:42
Alignment explanation
Indices: 77952076--77952157 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
77952066 GGTGTAGGGG
*
77952076 ACACACGGCTAGACCACATGCCCATG-GTGCAGGCAGTGTGTC
1 ACACACGGCTAGACCACATGCCCATGTGTGCA-CCAGTGTGTC
*
77952118 ACACACGGCCTAGA-CACATGCCCGTGTGTGCACCAGTGTG
1 ACACACGG-CTAGACCACATGCCCATGTGTGCACCAGTGTG
77952158 GACAACTTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
42 26 0.72
43 10 0.28
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (42 bp):
ACACACGGCTAGACCACATGCCCATGTGTGCACCAGTGTGTC
Found at i:77953187 original size:48 final size:48
Alignment explanation
Indices: 77953108--77953199 Score: 139
Period size: 48 Copynumber: 1.9 Consensus size: 48
77953098 TGTCTCATAT
* *
77953108 CGATGCCAATGCCATGTCACAAACATTGTCTTACATGGGATCACGTGA
1 CGATGCCAATGCCATGTCACAAACATGGTCTTACATGGAATCACGTGA
** *
77953156 CGATGCCAATGCCATGTCTGAGACATGGTCTTACATGGAATCAC
1 CGATGCCAATGCCATGTCACAAACATGGTCTTACATGGAATCAC
77953200 TTATAACCCT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (48 bp):
CGATGCCAATGCCATGTCACAAACATGGTCTTACATGGAATCACGTGA
Found at i:77955298 original size:34 final size:34
Alignment explanation
Indices: 77955250--77955318 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
77955240 CAAATACAAT
* **
77955250 TTTGGGCCTAAGCCCCTTTTAGTATCAGTAACAG
1 TTTGGGCCTAAGCCCATCATAGTATCAGTAACAG
* *
77955284 TTTGGGCCTTAGCCCATCATAGTATCAGTAGCAG
1 TTTGGGCCTAAGCCCATCATAGTATCAGTAACAG
77955318 T
1 T
77955319 CATGCAGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (34 bp):
TTTGGGCCTAAGCCCATCATAGTATCAGTAACAG
Found at i:77965605 original size:46 final size:44
Alignment explanation
Indices: 77965503--77965714 Score: 171
Period size: 46 Copynumber: 4.5 Consensus size: 44
77965493 ATGTCGGTGC
77965503 CATGTCCCAGACATGGTCTTACACTAGCTTAACTCGTAGACGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTTAACTCGTAGACGATG
* * *
77965548 CATATCCCAGACATGTCTTACACTGGCTTACATCTCG-AGGATGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTA-A-CTCGTA-GACGATG
* *
77965594 CATGTCCCAGACGTGTCTTACACTAGC-T--CTCGTCTCACCACCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTAACTCG--T-A-GA-CGATG
** *
77965640 TCATGTCCTGGACATGGTCTTACACTAGCTTAACTCGTAATGTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTTAACTCGT-A----GACGATG
*
77965691 TATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
77965715 GGCTCACAAT
Statistics
Matches: 132, Mismatches: 19, Indels: 28
0.74 0.11 0.16
Matches are distributed among these distances:
41 4 0.03
44 15 0.11
45 18 0.14
46 38 0.29
47 11 0.08
48 13 0.10
49 13 0.10
50 11 0.08
51 9 0.07
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAACTCGTAGACGATG
Found at i:77969099 original size:42 final size:42
Alignment explanation
Indices: 77968994--77969102 Score: 121
Period size: 44 Copynumber: 2.5 Consensus size: 42
77968984 ATATGTGTTA
* *
77968994 TCGTGTAAGACCATGTCTGGGACGTTAGCATTGACTTTTGATT
1 TCGTGTAAGACCATGTCTGGGATGTTAGCATCGAC-TTTGATT
* * *
77969037 TATGTGTAAGATCATGTCTGGGATGTTTGCATCGTA-TTTGATT
1 T-CGTGTAAGACCATGTCTGGGATGTTAGCATCG-ACTTTGATT
* *
77969080 TCGTGTAAGACCCTCTCTGGGAT
1 TCGTGTAAGACCATGTCTGGGAT
77969103 AGTGGCATCA
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 18 0.33
43 9 0.16
44 27 0.49
45 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.26, T:0.39
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGATGTTAGCATCGACTTTGATT
Found at i:77969111 original size:42 final size:43
Alignment explanation
Indices: 77968994--77969132 Score: 113
Period size: 43 Copynumber: 3.2 Consensus size: 43
77968984 ATATGTGTTA
* * * * *
77968994 TCGTGTAAGACCATGTCTGGGACGTTAGCATTGACT-TTTGATT
1 TCGTGTAAGACCATCTCTGGGATGTTGGCA-TCAGTATTTGATT
* * * *
77969037 TATGTGTAAGATCATGTCTGGGATGTTTGCATC-GTATTTGATT
1 T-CGTGTAAGACCATCTCTGGGATGTTGGCATCAGTATTTGATT
* *
77969080 TCGTGTAAGACCCTCTCTGGGATAG-TGGCATCATTATTTGATT
1 TCGTGTAAGACCATCTCTGGGAT-GTTGGCATCAGTATTTGATT
* *
77969123 ACATGTAAGA
1 TCGTGTAAGA
77969133 TTACATCTGG
Statistics
Matches: 78, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
42 25 0.32
43 28 0.36
44 25 0.32
ACGTcount: A:0.23, C:0.14, G:0.24, T:0.38
Consensus pattern (43 bp):
TCGTGTAAGACCATCTCTGGGATGTTGGCATCAGTATTTGATT
Found at i:77980314 original size:55 final size:54
Alignment explanation
Indices: 77980162--77980362 Score: 197
Period size: 53 Copynumber: 3.7 Consensus size: 54
77980152 CTTTTTAAAC
* * * * *
77980162 TTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCATTGCCTTAT-GAAC
1 TTACCAATGCCATGCCTTAACATGGTCTTACATGGTATCATTGCCTTATAGAAT
* * * * * *
77980215 TCACCATTGCCATGCCTTAGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGT
1 TTACCAATGCCATGCCTTAACATGGTCTTACATGGTATCATTGCCTTATAG-AAT
* * * * * * *
77980270 TTATCAATGCCATGTCTTAACATGGTCTTACATGATTTCCTTGCCTTGTAAAAT
1 TTACCAATGCCATGCCTTAACATGGTCTTACATGGTATCATTGCCTTATAGAAT
** *
77980324 TTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATC
1 TTACCAATGCCATGCCTTAACATGGTCTTACATGGTATC
77980363 CTTAAACCCT
Statistics
Matches: 118, Mismatches: 28, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 42 0.36
54 35 0.30
55 41 0.35
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (54 bp):
TTACCAATGCCATGCCTTAACATGGTCTTACATGGTATCATTGCCTTATAGAAT
Found at i:77988078 original size:43 final size:43
Alignment explanation
Indices: 77988025--77988110 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
77988015 ACATACAAAA
77988025 CTGGGCCATGAAATTTCGTTCAAATGAAATTCATTCATACCTT
1 CTGGGCCATGAAATTTCGTTCAAATGAAATTCATTCATACCTT
77988068 CTGGGCCATGAAATTTCGTTCAAATGAAATTCATTCATACCTT
1 CTGGGCCATGAAATTTCGTTCAAATGAAATTCATTCATACCTT
77988111 TGCAAATTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (43 bp):
CTGGGCCATGAAATTTCGTTCAAATGAAATTCATTCATACCTT
Found at i:77991476 original size:44 final size:45
Alignment explanation
Indices: 77991403--77991508 Score: 128
Period size: 44 Copynumber: 2.4 Consensus size: 45
77991393 TGCTTTGAAC
** *
77991403 ATCCGCACACTTAGTGCTGTAACAGTTAACCGAAGCTAGAAT-GAT
1 ATCCGCACACTTAGTGCCATAACAATTAACCGAAGCTA-AATCGAT
**
77991448 -TCCGCACACTTAGTGCCATCTCAATTAACCGAAGCTAAATCGAT
1 ATCCGCACACTTAGTGCCATAACAATTAACCGAAGCTAAATCGAT
*
77991492 AT-CGTACACTTAGTGCC
1 ATCCGCACACTTAGTGCC
77991509 TCATATAGTC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
43 3 0.06
44 49 0.92
45 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (45 bp):
ATCCGCACACTTAGTGCCATAACAATTAACCGAAGCTAAATCGAT
Found at i:77991986 original size:21 final size:21
Alignment explanation
Indices: 77991960--77991999 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
77991950 CATTTATTTC
*
77991960 ACATTTTAGTCCCTCAAAATA
1 ACATTTTAGTCCCACAAAATA
77991981 ACATTTTAGTCCCACAAAA
1 ACATTTTAGTCCCACAAAA
77992000 GGACCTCTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.25, G:0.05, T:0.30
Consensus pattern (21 bp):
ACATTTTAGTCCCACAAAATA
Found at i:77993801 original size:22 final size:22
Alignment explanation
Indices: 77993776--77993819 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
77993766 TAGTCATATA
77993776 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
77993798 ATAATTTATTAGTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
77993820 TATTTACCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:77993923 original size:15 final size:15
Alignment explanation
Indices: 77993903--77993958 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
77993893 ATTCAATATT
77993903 AATATTTTAATAATA
1 AATATTTTAATAATA
*
77993918 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
77993937 AATATATTAATAATA
1 AATATTTTAATAATA
77993952 AAT-TTTT
1 AATATTTT
77993959 TGTAGTATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
14 3 0.09
15 13 0.39
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:77993941 original size:34 final size:32
Alignment explanation
Indices: 77993891--77993954 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 32
77993881 ATTATTGAAA
* *
77993891 TTATTCAATATTAATATTTTAATAATAAATAT
1 TTATTCAATATAAATATATTAATAATAAATAT
77993923 TTATTACAATTATAAATATATTAATAATAAAT
1 TTATT-CAA-TATAAATATATTAATAATAAAT
77993955 TTTTTGTAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 5 0.18
33 3 0.11
34 20 0.71
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (32 bp):
TTATTCAATATAAATATATTAATAATAAATAT
Found at i:78000124 original size:46 final size:46
Alignment explanation
Indices: 77999978--78000150 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
77999968 GGTTGAGCAT
*
77999978 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * *
78000023 TCGAACTTGTTGAGTTGAGT-CGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
78000067 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
78000115 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78000151 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 13, Indels: 21
0.75 0.09 0.15
Matches are distributed among these distances:
40 2 0.02
41 4 0.04
43 3 0.03
44 7 0.07
45 18 0.17
46 52 0.50
47 7 0.07
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Done.