Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 238 of 325
Found at i:78007568 original size:46 final size:46
Alignment explanation
Indices: 78007518--78007693 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
78007508 TGGTTGAGCA
78007518 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
78007564 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
78007609 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
78007657 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78007694 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:78007674 original size:93 final size:93
Alignment explanation
Indices: 78007515--78007686 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
78007505 GGATGGTTGA
* *
78007515 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78007580 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
78007608 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78007673 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
78007687 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78010170 original size:39 final size:39
Alignment explanation
Indices: 78010028--78010205 Score: 170
Period size: 39 Copynumber: 4.6 Consensus size: 39
78010018 ATGATGTCCT
* * * *
78010028 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAT-C
* *
78010068 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAT-C
* *
78010108 AGGCT-A--CCCGAAGGCATTGGTGCGAGTTACTAAATC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
* *
78010144 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
*
78010184 GGGCTATGT-CCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
78010206 AACGAGTAGC
Statistics
Matches: 115, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
36 4 0.03
37 27 0.23
39 39 0.34
40 37 0.32
41 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:78018278 original size:40 final size:40
Alignment explanation
Indices: 78018087--78018271 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
78018077 TCGAATGATG
* * * * *
78018087 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGC-GAGTTACTAAA
* ** * *
78018127 TCCGGACTAAGATCCAAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
78018167 TCTGGGATAAG-ACCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78018206 TCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
78018247 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCCGAAGGCATTTG
78018272 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
39 33 0.28
40 77 0.65
41 9 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78018293 original size:79 final size:79
Alignment explanation
Indices: 78018143--78018294 Score: 175
Period size: 79 Copynumber: 1.9 Consensus size: 79
78018133 CTAAGATCCA
* * **
78018143 AAGGCATTTGTGCGAGTTACTAATTCTGGGATAAGACCGAAGGCATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGTTACTAATACCGGGATAAGACCGAAGGCATTGGAACGAGTTACTAAATC
78018208 CGGGTTAAGCCCCG
66 CGGGTTAAGCCCCG
* * * * *
78018222 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTAT
1 AAGGCATTTGTGCGAGTTACTAAT-ACCGGGATAAG-ACCGAAGGCATTGGAACGAGTTA-CTAA
78018285 ATCC-GGTTAA
63 ATCCGGGTTAA
78018295 ATTCTGAAGG
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
78 2 0.03
79 36 0.59
80 23 0.38
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGTTACTAATACCGGGATAAGACCGAAGGCATTGGAACGAGTTACTAAATC
CGGGTTAAGCCCCG
Found at i:78045806 original size:27 final size:27
Alignment explanation
Indices: 78045776--78045867 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
78045766 ATTACCAAAG
*
78045776 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
78045803 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
78045830 TACCCTCGA-TTGT-GAAATTACCGTTT
1 TACCCTCGATTTATAG-AATTACTGTTT
78045856 TACCCTCGATTT
1 TACCCTCGATTT
78045868 TGAAATTACT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.02
26 21 0.38
27 34 0.61
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:78045855 original size:26 final size:25
Alignment explanation
Indices: 78045792--78045877 Score: 109
Period size: 26 Copynumber: 3.3 Consensus size: 25
78045782 CAATTTATAG
* *
78045792 AATTACTGTTTTACCCTTGATTTACA
1 AATTACTGTTTTACCCTCGATTT-GA
78045818 GAATTACTGTTTTACCCTCGATTGTGA
1 -AATTACTGTTTTACCCTCGATT-TGA
*
78045845 AATTACCGTTTTACCCTCGATTTTGA
1 AATTACTGTTTTACCCTCGA-TTTGA
78045871 AATTACT
1 AATTACT
78045878 AAAATACCCC
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
26 28 0.53
27 24 0.45
28 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.12, T:0.43
Consensus pattern (25 bp):
AATTACTGTTTTACCCTCGATTTGA
Found at i:78045928 original size:27 final size:27
Alignment explanation
Indices: 78045898--78046035 Score: 118
Period size: 27 Copynumber: 5.1 Consensus size: 27
78045888 TATAGGGTAG
* *
78045898 AATTTCAAAAATACCCTTAGTTTGTAA
1 AATTACAAAAATACCCTTAATTTGTAA
* ** *
78045925 AATTACCAAAATACCAC-TGGTTTGTGA
1 AATTACAAAAATACC-CTTAATTTGTAA
* *
78045952 AATTATC-GAAATACCCTCAATTTGTAA
1 AATTA-CAAAAATACCCTTAATTTGTAA
* * **
78045979 AATTACCAAAATACCCCTAATTTAAAA
1 AATTACAAAAATACCCTTAATTTGTAA
*
78046006 AATTACAAAAATACCCTTAACTTTCTAA
1 AATTACAAAAATACCCTTAA-TTTGTAA
78046034 AA
1 AA
78046036 ATTATAGAAA
Statistics
Matches: 88, Mismatches: 18, Indels: 9
0.77 0.16 0.08
Matches are distributed among these distances:
26 2 0.02
27 77 0.88
28 9 0.10
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (27 bp):
AATTACAAAAATACCCTTAATTTGTAA
Found at i:78046018 original size:54 final size:54
Alignment explanation
Indices: 78045898--78046022 Score: 144
Period size: 54 Copynumber: 2.3 Consensus size: 54
78045888 TATAGGGTAG
* * * ** ***
78045898 AATTTCAAAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGA
1 AATTACAAAAATACCCTCAATTTGTAAAATTACCAAAATACCACTAATTTAAAA
* *
78045952 AATTATC-GAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTAAAA
1 AATTA-CAAAAATACCCTCAATTTGTAAAATTACCAAAATACCACTAATTTAAAA
78046006 AATTACAAAAATACCCT
1 AATTACAAAAATACCCT
78046023 TAACTTTCTA
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
53 1 0.02
54 56 0.97
55 1 0.02
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.30
Consensus pattern (54 bp):
AATTACAAAAATACCCTCAATTTGTAAAATTACCAAAATACCACTAATTTAAAA
Found at i:78046081 original size:27 final size:27
Alignment explanation
Indices: 78045870--78046106 Score: 115
Period size: 27 Copynumber: 8.7 Consensus size: 27
78045860 CTCGATTTTG
*
78045870 AAATTACTAAAATACCCCTATAG--GGTA
1 AAATTACTAAAATA-CCCT-TAGTTTGTA
* * *
78045897 GAATTTCAAAAATACCCTTAGTTTGTA
1 AAATTACTAAAATACCCTTAGTTTGTA
* * *
78045924 AAATTACCAAAATACCAC-TGGTTTGTG
1 AAATTACTAAAATACC-CTTAGTTTGTA
* * *
78045951 AAATTA-TCGAAATACCCTCAATTTGTA
1 AAATTACT-AAAATACCCTTAGTTTGTA
* * * **
78045978 AAATTACCAAAATACCCCTAATTTAAA
1 AAATTACTAAAATACCCTTAGTTTGTA
* * *
78046005 AAATTACAAAAATACCCTTAACTTTCTAA
1 AAATTACTAAAATACCCTT-AGTTTGT-A
*** * *
78046034 AAATTA-TAGAAATATAATTGGTTTATA
1 AAATTACTA-AAATACCCTTAGTTTGTA
* *
78046061 AAATTACTGAAATACCCTTGGTTTGTA
1 AAATTACTAAAATACCCTTAGTTTGTA
* * * *
78046088 GATTTACCAAAACACCCTT
1 AAATTACTAAAATACCCTT
78046107 GTAGGATGAA
Statistics
Matches: 157, Mismatches: 43, Indels: 20
0.71 0.20 0.09
Matches are distributed among these distances:
25 3 0.02
26 5 0.03
27 124 0.79
28 11 0.07
29 14 0.09
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACTAAAATACCCTTAGTTTGTA
Found at i:78046177 original size:27 final size:27
Alignment explanation
Indices: 78046125--78046202 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
78046115 AATTGACTAA
* **
78046125 AATACCCCTAATA-GGTAAAAAAACCGT
1 AATACCCCT-GTAGGGTAAAATGACCGT
*
78046152 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAATGACCGT
* *
78046179 AATACCCTTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
78046203 AAATATGCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.07
27 37 0.90
28 1 0.02
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:78047046 original size:25 final size:24
Alignment explanation
Indices: 78047012--78047081 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
78047002 AGGAAGTGCT
78047012 AAAAGGGCTTTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
78047036 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
**
78047061 AGAAAGGGCTTTAACCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
78047082 ATTAAAAAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:78047091 original size:25 final size:25
Alignment explanation
Indices: 78047012--78047092 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
78047002 AGGAAGTGCT
** ***
78047012 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTAACCCAGTTTATAA
** *
78047037 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTAACCCAGTTTATAA
*
78047062 GAAAGGGCTTTAACCCAG-TTATTAA
1 AAAAGGGCTTTAACCCAGTTTA-TAA
78047087 AAAAGG
1 AAAAGG
78047093 CTAGGCCTCC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 3 0.06
25 45 0.94
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTAACCCAGTTTATAA
Found at i:78047288 original size:42 final size:42
Alignment explanation
Indices: 78047229--78047320 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
78047219 TAGTCTCCCC
* *
78047229 AAATGGGCTTGCATACATTCATTGACATTACATGTGATTTTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
78047271 AAATGGGCTTGCATACATCCATTGGCATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
78047313 AAATGGGC
1 AAATGGGC
78047321 CTAAGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:78047393 original size:31 final size:31
Alignment explanation
Indices: 78047344--78047463 Score: 163
Period size: 31 Copynumber: 3.7 Consensus size: 31
78047334 CGCTTACAGT
78047344 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
78047374 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
78047405 AAAGGCTTCGGCCCAGGCCCAGTGATATGATTTATGG
1 AAAGGCTT-----C-GGCCCAGTGATATGATTTATGA
78047442 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
78047464 TCAAGACTAA
Statistics
Matches: 82, Mismatches: 1, Indels: 14
0.85 0.01 0.14
Matches are distributed among these distances:
30 16 0.20
31 35 0.43
32 1 0.01
36 1 0.01
37 29 0.35
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:78047424 original size:37 final size:37
Alignment explanation
Indices: 78047355--78047457 Score: 155
Period size: 37 Copynumber: 2.9 Consensus size: 37
78047345 AAGGCTTCGG
78047355 CCAGTGATATGATTTATGAAAAGGCTT-----C-GGC
1 CCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGGC
78047386 CCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGGC
1 CCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGGC
*
78047423 CCAGTGATATGATTTATGGAAAGGCTTCGGCCCAG
1 CCAGTGATATGATTTATGAAAAGGCTTCGGCCCAG
78047458 TATATGTCAA
Statistics
Matches: 65, Mismatches: 1, Indels: 6
0.90 0.01 0.08
Matches are distributed among these distances:
31 27 0.42
36 1 0.02
37 37 0.57
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (37 bp):
CCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGGC
Found at i:78049762 original size:27 final size:27
Alignment explanation
Indices: 78049732--78049822 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
78049722 ATTGCCAAAG
78049732 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* * *
78049759 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* **
78049786 TACCCTCGA-TTGT-GAAATTACCATTT
1 TACCCTCGATTTATAG-AATTACTGTTT
78049812 TACCCTCGATT
1 TACCCTCGATT
78049823 GTGAAATTAC
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
25 1 0.02
26 19 0.36
27 33 0.62
ACGTcount: A:0.25, C:0.21, G:0.11, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:78049841 original size:26 final size:26
Alignment explanation
Indices: 78049786--78049949 Score: 125
Period size: 26 Copynumber: 6.2 Consensus size: 26
78049776 ATTATTGTTT
***
78049786 TACCCTCGATTGTGAAATTACCATTT
1 TACCCTCGATTGTGAAATTACCAAAA
**
78049812 TACCCTCGATTGTGAAATTACTGAAA
1 TACCCTCGATTGTGAAATTACCAAAA
* * *
78049838 TACCC-CTATAGGGTAGAATTACCAAAA
1 TACCCTCGATTGTG-A-AATTACCAAAA
* *
78049865 TACCCCTAGTTTGT-AAATTACCAAAA
1 TA-CCCTCGATTGTGAAATTACCAAAA
* * *
78049891 TACCACTAGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTGTGAAATTACCAAAA
** *
78049918 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTCGA-TTGTGAAATTACCAAAA
78049945 TACCC
1 TACCC
78049950 CTGATTTACA
Statistics
Matches: 110, Mismatches: 21, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
25 7 0.06
26 51 0.46
27 47 0.43
28 3 0.03
29 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (26 bp):
TACCCTCGATTGTGAAATTACCAAAA
Found at i:78049883 original size:53 final size:54
Alignment explanation
Indices: 78049821--78049951 Score: 142
Period size: 53 Copynumber: 2.4 Consensus size: 54
78049811 TTACCCTCGA
* ** *
78049821 TTGTGAAATTACTGAAATACCCCTA-TAGGGT-AGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT-GGGTGA-AATTACCAAAATACCCCTAAT
* ** * *
78049875 TTGT-AAATTACCAAAATACCACTAGTTTGTGAAATTACCGAAATACCCTTAAT
1 TTGTAAAATTACCAAAATACCCCTAGTGGGTGAAATTACCAAAATACCCCTAAT
78049928 TTGTAAAATTACCAAAATACCCCT
1 TTGTAAAATTACCAAAATACCCCT
78049952 GATTTACAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
53 41 0.63
54 24 0.37
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.30
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCCTAGTGGGTGAAATTACCAAAATACCCCTAAT
Found at i:78049956 original size:27 final size:27
Alignment explanation
Indices: 78049854--78049976 Score: 144
Period size: 27 Copynumber: 4.6 Consensus size: 27
78049844 TATAGGGTAG
78049854 AATTACCAAAATACCCCTAGTTTGT-A
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
78049880 AATTACCAAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
78049907 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
**
78049934 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
78049961 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
78049977 TTGACTTTCT
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 26 0.31
27 57 0.69
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:78049964 original size:54 final size:53
Alignment explanation
Indices: 78049854--78050053 Score: 172
Period size: 54 Copynumber: 3.7 Consensus size: 53
78049844 TATAGGGTAG
* * **
78049854 AATTACCAAAATACCCCTAGTTTGT-AAATTACCAAAATACCACT-AGTTTGTGA
1 AATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGA-TTT-ACA
* *
78049907 AATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTGATTTACAA
1 AATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGATTTAC-A
* * * * * * *
78049961 AATTACAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACTATTGGTTTACA
1 AATTACCGAAATACCCTT-AGTTTGT-AAAATTACCA-AAATACCACTGATTTACA
* * * *
78050016 AATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 AATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAA
78050054 CACCCTTGTA
Statistics
Matches: 119, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
53 30 0.25
54 44 0.37
55 25 0.21
56 20 0.17
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (53 bp):
AATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGATTTACA
Found at i:78050026 original size:26 final size:26
Alignment explanation
Indices: 78049989--78050038 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
78049979 GACTTTCTAA
*
78049989 AAATTATAGAAATACTATTGGTTTAC
1 AAATTATAGAAATACCATTGGTTTAC
*
78050015 AAATTACT-GAAATACCCTTGGTTT
1 AAATTA-TAGAAATACCATTGGTTT
78050039 GTAGATTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (26 bp):
AAATTATAGAAATACCATTGGTTTAC
Found at i:78051004 original size:25 final size:25
Alignment explanation
Indices: 78050966--78051035 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
78050956 AGGAAGTGCT
*
78050966 AAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
78050991 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
78051016 GAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
78051036 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:78051118 original size:31 final size:31
Alignment explanation
Indices: 78051083--78051191 Score: 148
Period size: 31 Copynumber: 3.4 Consensus size: 31
78051073 AGCTATGCTG
78051083 CCAGTGATATGATTTATGAAAAGGCTTCGGC
1 CCAGTGATATGATTTATGAAAAGGCTTCGGC
78051114 CCAGTGATATGATTTATGAAAAGGCTTCGGCCC
1 CCAGTGATATGATTTATGAAAAGGCTTCGG--C
*
78051147 AGGCCTAGTGATATGATTTATGGAAAGGCTTCGGC
1 ---CC-AGTGATATGATTTATGAAAAGGCTTCGGC
78051182 CCAGT-ATATG
1 CCAGTGATATG
78051192 TCAAGACTAA
Statistics
Matches: 71, Mismatches: 1, Indels: 13
0.84 0.01 0.15
Matches are distributed among these distances:
30 5 0.07
31 33 0.46
32 2 0.03
33 1 0.01
35 1 0.01
36 2 0.03
37 27 0.38
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
CCAGTGATATGATTTATGAAAAGGCTTCGGC
Found at i:78051157 original size:37 final size:35
Alignment explanation
Indices: 78051082--78051185 Score: 153
Period size: 37 Copynumber: 3.0 Consensus size: 35
78051072 TAGCTATGCT
78051082 GCCAGTGATATGATTTATGAAAAGGCTTCGG--C-
1 GCCAGTGATATGATTTATGAAAAGGCTTCGGCCCA
78051114 -CCAGTGATATGATTTATGAAAAGGCTTCGGCCCA
1 GCCAGTGATATGATTTATGAAAAGGCTTCGGCCCA
*
78051148 GGCCTAGTGATATGATTTATGGAAAGGCTTCGGCCCA
1 -GCC-AGTGATATGATTTATGAAAAGGCTTCGGCCCA
78051185 G
1 G
78051186 TATATGTCAA
Statistics
Matches: 65, Mismatches: 1, Indels: 8
0.88 0.01 0.11
Matches are distributed among these distances:
31 30 0.46
33 1 0.02
36 3 0.05
37 31 0.48
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (35 bp):
GCCAGTGATATGATTTATGAAAAGGCTTCGGCCCA
Found at i:78053986 original size:15 final size:16
Alignment explanation
Indices: 78053950--78053979 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
78053940 ATATATCATT
78053950 TATTTCATTATACCAA
1 TATTTCATTATACCAA
78053966 TATTTCA-TATACCA
1 TATTTCATTATACCA
78053980 TAGTTTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (16 bp):
TATTTCATTATACCAA
Found at i:78055840 original size:40 final size:40
Alignment explanation
Indices: 78055792--78055985 Score: 325
Period size: 40 Copynumber: 4.8 Consensus size: 40
78055782 ACCAACTTAC
* *
78055792 CACGAATGCTCTTCGGGACTTAGCCCAGATATATTACCAG
1 CACGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAG
* *
78055832 CACGAATGCTCTTCGGGACTTAGCCCGGACATAACACCAG
1 CACGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAG
*
78055872 CACGAATGCTCTTCGGGACTTAGCCCGGATATATTACCAG
1 CACGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAG
* *
78055912 CACGAATGCTTTTCGGGACTTAGCCCGGATATAACACCAG
1 CACGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAG
78055952 CACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACGAATGCTCTTCGGGACTTAGCCCGGATATAT
78055986 AACTCTCAAT
Statistics
Matches: 142, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CACGAATGCTCTTCGGGACTTAGCCCGGATATATCACCAG
Found at i:78055927 original size:80 final size:80
Alignment explanation
Indices: 78055792--78055985 Score: 361
Period size: 80 Copynumber: 2.4 Consensus size: 80
78055782 ACCAACTTAC
*
78055792 CACGAATGCTCTTCGGGACTTAGCCCAGATATATTACCAGCACGAATGCTCTTCGGGACTTAGCC
1 CACGAATGCTCTTCGGGACTTAGCCCGGATATATTACCAGCACGAATGCTCTTCGGGACTTAGCC
78055857 CGGACATAACACCAG
66 CGGACATAACACCAG
*
78055872 CACGAATGCTCTTCGGGACTTAGCCCGGATATATTACCAGCACGAATGCTTTTCGGGACTTAGCC
1 CACGAATGCTCTTCGGGACTTAGCCCGGATATATTACCAGCACGAATGCTCTTCGGGACTTAGCC
*
78055937 CGGATATAACACCAG
66 CGGACATAACACCAG
78055952 CACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACGAATGCTCTTCGGGACTTAGCCCGGATATAT
78055986 AACTCTCAAT
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 111 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CACGAATGCTCTTCGGGACTTAGCCCGGATATATTACCAGCACGAATGCTCTTCGGGACTTAGCC
CGGACATAACACCAG
Found at i:78057675 original size:49 final size:49
Alignment explanation
Indices: 78057563--78057826 Score: 457
Period size: 49 Copynumber: 5.5 Consensus size: 49
78057553 TATCACAGTT
* *
78057563 ATACACTTCCAC-TTCCATCACATTGGCCATTCGGCCTTAT--CATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATAC
*
78057610 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
78057659 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
78057708 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
78057757 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
78057804 ATACACTTTCACATTCATCACAT
1 ATACACTTTCACATTCATCACAT
78057827 AAAATCCTAA
Statistics
Matches: 210, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
47 62 0.30
48 2 0.01
49 146 0.70
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (49 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
Found at i:78062840 original size:41 final size:40
Alignment explanation
Indices: 78062711--78062881 Score: 144
Period size: 41 Copynumber: 4.2 Consensus size: 40
78062701 CAGGATATTA
* * * * * *
78062711 CAATTCAGGGGTACCGAAGTACAAACAGGAGCACGTCTATG
1 CAATTCAGGAGTA-CGAAGTACAAATAGGGGCACATATGTG
* * * *
78062752 CAATTTAGGGGTACCGAAGTACAAACAAGGGCACATATGTG
1 CAATTCAGGAGTA-CGAAGTACAAATAGGGGCACATATGTG
* * *
78062793 CGATTCAGTAGTATCGAAGTGCAAATAGGGGCACATATGTG
1 CAATTCAGGAGTA-CGAAGTACAAATAGGGGCACATATGTG
* * * * *
78062834 TAATTCAGGGGTACTGAAATACAAATAGGGGCACGTTTGTG
1 CAATTCAGGAGTAC-GAAGTACAAATAGGGGCACATATGTG
78062875 CAATTCA
1 CAATTCA
78062882 TCATTATTCT
Statistics
Matches: 106, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
40 1 0.01
41 105 0.99
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (40 bp):
CAATTCAGGAGTACGAAGTACAAATAGGGGCACATATGTG
Found at i:78073458 original size:15 final size:15
Alignment explanation
Indices: 78073433--78073501 Score: 93
Period size: 15 Copynumber: 4.6 Consensus size: 15
78073423 GAGATGACAT
*
78073433 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
* *
78073448 GAAGTCCAAGACAAA
1 GAAATCCAAGATAAA
*
78073463 GAAATCCTAGATAAA
1 GAAATCCAAGATAAA
*
78073478 GAAATCCAAGATATA
1 GAAATCCAAGATAAA
78073493 GAAATCCAA
1 GAAATCCAA
78073502 AATACAATAT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 46 1.00
ACGTcount: A:0.57, C:0.16, G:0.14, T:0.13
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:78077033 original size:28 final size:29
Alignment explanation
Indices: 78077001--78077099 Score: 107
Period size: 28 Copynumber: 3.5 Consensus size: 29
78076991 ATAATAAGCC
*
78077001 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
*
78077029 CGCACACTTAGTGC-TATATAATC-AACCT
1 CGCACACTTAGTGCTTACATAATCGAA-CT
* * *
78077057 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
78077086 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78077100 CAATCTCATG
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
27 4 0.07
28 35 0.57
29 17 0.28
30 5 0.08
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:78082356 original size:48 final size:48
Alignment explanation
Indices: 78082304--78082537 Score: 229
Period size: 48 Copynumber: 4.9 Consensus size: 48
78082294 GTTGAGGACG
* * * *
78082304 ATGCCATGTCCCAGACATGTTCTTACACTAGCTCTCATCTCAATGCTA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCTA
* * * * * * *
78082352 ATGCCATGTCCCAGACAAGGTCTTATAGTAGCACACATATCAGTGATG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCTA
* * *
78082400 ATGCCATGTCCCAGACATGGCCTTACATTGGCGCACATATCAATG-TCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCT-A
* * * * * **
78082448 ATGCCATG-CCTGAAACATGGTCTTACACTGGCGCACATATTAATACCG
1 ATGCCATGTCC-CAGACATGGTCTTACACTAGCGCACATATCAATGCTA
* *
78082496 ATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCA
78082538 CCCAAATGTC
Statistics
Matches: 152, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
47 3 0.02
48 147 0.97
49 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCTA
Found at i:78082425 original size:96 final size:96
Alignment explanation
Indices: 78082302--78082537 Score: 253
Period size: 96 Copynumber: 2.5 Consensus size: 96
78082292 ATGTTGAGGA
* * * *
78082302 CGATGCCATGTCCCAGACATGTTCTTACACTAGCTCTCATCTCAATG-CTAATGCCATGTCC-CA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGTC-AATGCCATG-CCTCA
* * * *
78082365 GACAAGGTCTTATAGTAGCACACATATCAGTGA-
64 AACAAGGTCTTACACTAGCACACATATCAAT-AC
* * * * *
78082398 TGATGCCATGTCCCAGACATGGCCTTACATTGGCGCACATATCAATGTCAATGCCATGCCTGAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGTCAATGCCATGCCTCAAA
* * * *
78082463 CATGGTCTTACACTGGCGCACATATTAATAC
66 CAAGGTCTTACACTAGCACACATATCAATAC
* *
78082494 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCA
78082538 CCCAAATGTC
Statistics
Matches: 114, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
95 3 0.03
96 110 0.96
97 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGTCAATGCCATGCCTCAAA
CAAGGTCTTACACTAGCACACATATCAATAC
Found at i:78082897 original size:82 final size:82
Alignment explanation
Indices: 78082760--78082923 Score: 319
Period size: 82 Copynumber: 2.0 Consensus size: 82
78082750 TGGCCTTCCC
78082760 CTAATCTAGGCCCGAATTTTGTATTTCTTTATCTAAAATGATAAAAATTCACTAATTTAATCACC
1 CTAATCTAGGCCCGAATTTTGTATTTCTTTATCTAAAATGATAAAAATTCACTAATTTAATCACC
*
78082825 ATATTAATCAATTCATT
66 ATATTAATCAATGCATT
78082842 CTAATCTAGGCCCGAATTTTGTATTTCTTTATCTAAAATGATAAAAATTCACTAATTTAATCACC
1 CTAATCTAGGCCCGAATTTTGTATTTCTTTATCTAAAATGATAAAAATTCACTAATTTAATCACC
78082907 ATATTAATCAATGCATT
66 ATATTAATCAATGCATT
78082924 TCATAATTAA
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 81 1.00
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.40
Consensus pattern (82 bp):
CTAATCTAGGCCCGAATTTTGTATTTCTTTATCTAAAATGATAAAAATTCACTAATTTAATCACC
ATATTAATCAATGCATT
Found at i:78088444 original size:34 final size:34
Alignment explanation
Indices: 78088372--78088444 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
78088362 GCCCTTTTCT
* * * *
78088372 CAGTAATAGAATCAGTCAGGGCTTGATCCTATTT
1 CAGTAACAGAATCAGTCAGGGCTTGAGCCTAGTA
* *
78088406 CAGTAACAGAATCAGTCTGGGCTTTAGCCTAGTA
1 CAGTAACAGAATCAGTCAGGGCTTGAGCCTAGTA
78088440 CAGTA
1 CAGTA
78088445 CAGTATGCAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (34 bp):
CAGTAACAGAATCAGTCAGGGCTTGAGCCTAGTA
Found at i:78089175 original size:24 final size:25
Alignment explanation
Indices: 78089143--78089195 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 25
78089133 CGACAACCGA
78089143 CTTTTTGACTTTTCAACCTTT-CAG
1 CTTTTTGACTTTTCAACCTTTGCAG
*
78089167 CTTTTTGACTTTTCAGCCTTTGCAG
1 CTTTTTGACTTTTCAACCTTTGCAG
78089192 -TTTT
1 CTTTT
78089196 ACATCCAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 24 0.89
25 3 0.11
ACGTcount: A:0.13, C:0.23, G:0.11, T:0.53
Consensus pattern (25 bp):
CTTTTTGACTTTTCAACCTTTGCAG
Found at i:78096144 original size:34 final size:34
Alignment explanation
Indices: 78096072--78096144 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
78096062 ACCGCTTTCT
* *
78096072 CAGTAACAGAATCAGTCTGGGCCTGAGCCCATTT
1 CAGTAACAGAATCAGTCTGGGCCTGAGCCCAATA
* * * *
78096106 CAGTAACAGAATCAGTTTGGGCTTTAGCCTAATA
1 CAGTAACAGAATCAGTCTGGGCCTGAGCCCAATA
78096140 CAGTA
1 CAGTA
78096145 CAGTATGCAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (34 bp):
CAGTAACAGAATCAGTCTGGGCCTGAGCCCAATA
Found at i:78100677 original size:48 final size:48
Alignment explanation
Indices: 78100625--78100996 Score: 455
Period size: 48 Copynumber: 7.8 Consensus size: 48
78100615 TACGACACCG
* * *
78100625 TGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCTGATGCCA
1 TGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCA
* * *
78100673 TGTCCTAGACATGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCA
1 TGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCA
* * *
78100721 TGTCCTAGACATGGTCTTACACTGGCTCTCATA--ATATGGCCGATGTCA
1 TGTCCCAGACATGGTCTTACACTAGCTCTCATATCA-AT-GCCGATGCCA
* * *
78100769 TGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCTGATGCCA
1 TGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCA
* * *
78100817 TGTCCCAGACATGGTCTTACATTAGCGT-ACATATCAATACCGATGCCA
1 TGTCCCAGACATGGTCTTACACTAGC-TCTCATATCAATGCCGATGCCA
* * *
78100865 TGTCCCAGATATGGTCTTACACTAGCTCACATATCAATGCCAATGCCA
1 TGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCA
* *
78100913 TGTCCCAGACATGGTCTTACACTGGCTCTCAT-TACATTGCCGATGCCA
1 TGTCCCAGACATGGTCTTACACTAGCTCTCATAT-CAATGCCGATGCCA
* * * * *
78100961 TGTTCTAAACATGGTCTTACACTAGCACACATATCA
1 TGTCCCAGACATGGTCTTACACTAGCTCTCATATCA
78100997 CCTAAATGTC
Statistics
Matches: 285, Mismatches: 31, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
46 1 0.00
47 4 0.01
48 276 0.97
49 3 0.01
50 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (48 bp):
TGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCA
Found at i:78100734 original size:96 final size:96
Alignment explanation
Indices: 78100566--78100996 Score: 478
Period size: 96 Copynumber: 4.5 Consensus size: 96
78100556 GAGGGTGAAT
* * * ** * ** *
78100566 TGCCGATGCCATGAT-CCAAACATGGTCTTACACTGGCTCACATGTTGA-GTACGACACCGTGTC
1 TGCCGATGCCATG-TCCCAGACATGGTCTTACACTAGCTCACATATCAATG-CCGATGCCATGTC
* *
78100629 CCAGACATGGTCTTACACTAGCTCTCGTCTCAA
64 CCAGACATGGTCTTACACTAGCTCTCATATCAA
* * * * * *
78100662 TGCTGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCC
*
78100727 AGACATGGTCTTACACTGGCTCTCATA--ATA
66 AGACATGGTCTTACACTAGCTCTCATATCA-A
* * *
78100757 TGGCCGATGTCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCTGATGCCATGTCC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCC
* *
78100822 CAGACATGGTCTTACATTAGCGT-ACATATCAA
65 CAGACATGGTCTTACACTAGC-TCTCATATCAA
* * *
78100854 TACCGATGCCATGTCCCAGATATGGTCTTACACTAGCTCACATATCAATGCCAATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCC
* *
78100919 AGACATGGTCTTACACTGGCTCTCAT-TACAT
66 AGACATGGTCTTACACTAGCTCTCATAT-CAA
* * * *
78100950 TGCCGATGCCATGTTCTAAACATGGTCTTACACTAGCACACATATCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCA
78100997 CCTAAATGTC
Statistics
Matches: 281, Mismatches: 45, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
94 1 0.00
95 5 0.02
96 270 0.96
97 4 0.01
98 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCC
AGACATGGTCTTACACTAGCTCTCATATCAA
Found at i:78101942 original size:16 final size:16
Alignment explanation
Indices: 78101921--78101955 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
78101911 GGCCATGCTA
78101921 TTAATAAAGGCATATT
1 TTAATAAAGGCATATT
78101937 TTAATAAAGGCATATT
1 TTAATAAAGGCATATT
78101953 TTA
1 TTA
78101956 TCTTTAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (16 bp):
TTAATAAAGGCATATT
Found at i:78104585 original size:32 final size:32
Alignment explanation
Indices: 78104544--78104609 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
78104534 GTGACATTGC
78104544 GTATCCCGAATAAATCTCTAGAATAATTTGAT
1 GTATCCCGAATAAATCTCTAGAATAATTTGAT
*
78104576 GTATCCCGAATAAATCTTTAGAATAATTTGAT
1 GTATCCCGAATAAATCTCTAGAATAATTTGAT
78104608 GT
1 GT
78104610 CTCTTTTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (32 bp):
GTATCCCGAATAAATCTCTAGAATAATTTGAT
Found at i:78111535 original size:46 final size:46
Alignment explanation
Indices: 78111475--78111650 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
78111465 TGGTTGAGCA
*
78111475 TCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* * *
78111521 TCCGAACTCGTTGAGTTGAGTTCGAGTT---C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G
* * *
78111566 CATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* * *
78111614 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGG
78111651 GCAGGTTACA
Statistics
Matches: 106, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 1 0.01
46 60 0.57
47 26 0.25
48 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
Found at i:78111631 original size:93 final size:93
Alignment explanation
Indices: 78111472--78111642 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
78111462 GGATGGTTGA
* * *
78111472 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTCAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
*
78111537 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
78111565 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTCAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
78111630 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
78111643 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTCAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78122563 original size:24 final size:24
Alignment explanation
Indices: 78122511--78122676 Score: 212
Period size: 24 Copynumber: 7.0 Consensus size: 24
78122501 GCTTTATCAT
*
78122511 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
78122536 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
78122560 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* * *
78122583 ATCACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
78122607 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
78122631 ATAACTGGGGCATAAGTCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
78122654 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
78122677 TCGCTTCCTC
Statistics
Matches: 123, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
23 40 0.33
24 71 0.58
25 12 0.10
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:78122646 original size:71 final size:71
Alignment explanation
Indices: 78122511--78122676 Score: 235
Period size: 71 Copynumber: 2.3 Consensus size: 71
78122501 GCTTTATCAT
* *
78122511 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTAGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAA
78122575 GCCCTTTA
64 GCCCTTTA
* * * * * *
78122583 ATCACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAAGC
78122648 CCTTTA
66 CCTTTA
78122654 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
78122677 TCGCTTCCTC
Statistics
Matches: 84, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
71 73 0.87
72 11 0.13
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAAGC
CCTTTA
Found at i:78122676 original size:47 final size:48
Alignment explanation
Indices: 78122511--78122676 Score: 212
Period size: 47 Copynumber: 3.5 Consensus size: 48
78122501 GCTTTATCAT
* * *
78122511 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
* * * *
78122560 ATAACTAGGGCATAAGCCC-TTTAATCACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
* *
78122607 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGTCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
78122654 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
78122677 TCGCTTCCTC
Statistics
Matches: 103, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
47 68 0.66
48 24 0.23
49 11 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:78122751 original size:20 final size:20
Alignment explanation
Indices: 78122726--78122792 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
78122716 TTATGATTAC
78122726 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
78122746 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
78122766 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
78122786 ACCATGT
1 ATCATGT
78122793 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:78122757 original size:11 final size:11
Alignment explanation
Indices: 78122726--78122781 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
78122716 TTATGATTAC
78122726 ATCATGTGCAT
1 ATCATGTGCAT
*
78122737 ATCA--TACAT
1 ATCATGTGCAT
78122746 ATCATGTGCAT
1 ATCATGTGCAT
*
78122757 ATCA--TACAT
1 ATCATGTGCAT
*
78122766 GTCATGTGCAT
1 ATCATGTGCAT
78122777 ATCAT
1 ATCAT
78122782 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:78122861 original size:25 final size:25
Alignment explanation
Indices: 78122829--78122876 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
78122819 ATACATAAAC
* * *
78122829 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
78122854 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
78122877 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:78124026 original size:25 final size:27
Alignment explanation
Indices: 78123970--78124046 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
78123960 GGGCATATTC
* *
78123970 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCCTACAGGGGTATTACG
78123997 GTCACTTTACCCTACA-GGGT-TTACG
1 GTCACTTTACCCTACAGGGGTATTACG
* *
78124022 TTCACTTTACCCTAATAGGGGTATT
1 GTCACTTTACCCT-ACAGGGGTATT
78124047 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
25 17 0.40
26 6 0.14
27 18 0.42
28 2 0.05
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGTATTACG
Found at i:78124041 original size:26 final size:26
Alignment explanation
Indices: 78123970--78124035 Score: 89
Period size: 25 Copynumber: 2.5 Consensus size: 26
78123960 GGGCATATTC
* *
78123970 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCCTACA-GGGTATTACG
78123997 GTCACTTTACCCTACAGGGT-TTACG
1 GTCACTTTACCCTACAGGGTATTACG
*
78124022 TTCACTTTACCCTA
1 GTCACTTTACCCTA
78124036 ATAGGGGTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
25 18 0.50
26 4 0.11
27 14 0.39
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.35
Consensus pattern (26 bp):
GTCACTTTACCCTACAGGGTATTACG
Found at i:78124117 original size:27 final size:27
Alignment explanation
Indices: 78124087--78124289 Score: 117
Period size: 27 Copynumber: 7.4 Consensus size: 27
78124077 GTAAATCTAC
*
78124087 AAACCAAAGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
78124114 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
78124140 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* ** **
78124170 AAATC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTCAGTAATTTTGT
* * ** **
78124197 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
78124224 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* * ** *
78124251 AAATCGAGGGTAAAAT-AGTAATTCTGT
1 AAACCAAGGGT-ATTTCAGTAATTTTGT
*
78124278 AAATCAAGGGTA
1 AAACCAAGGGTA
78124290 AAACAGTAAT
Statistics
Matches: 143, Mismatches: 24, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
26 4 0.03
27 111 0.78
28 10 0.07
29 17 0.12
30 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:78124290 original size:27 final size:26
Alignment explanation
Indices: 78124240--78124416 Score: 174
Period size: 27 Copynumber: 6.6 Consensus size: 26
78124230 AGGGTATTTT
78124240 AGTAATTTTGTAAATCGAGGGTAAAA
1 AGTAATTTTGTAAATCGAGGGTAAAA
* *
78124266 TAGTAATTCTGTAAATCAAGGGTAAAA
1 -AGTAATTTTGTAAATCGAGGGTAAAA
* * * *
78124293 CAGTAATTCTATAAATCGACGATAAAA
1 -AGTAATTTTGTAAATCGAGGGTAAAA
*
78124320 CGATAATTTTGTAAATCGAGGGTAAAA
1 AG-TAATTTTGTAAATCGAGGGTAAAA
* *
78124347 CGATAATTTTGTAAGTCGAGGGTAAAA
1 AG-TAATTTTGTAAATCGAGGGTAAAA
* * *
78124374 CGATAATTATGTAAATCGGGGGTAAAA
1 AG-TAATTTTGTAAATCGAGGGTAAAA
* *
78124401 TGGTAATTATGTAAAT
1 -AGTAATTTTGTAAAT
78124417 TAGGGGTACT
Statistics
Matches: 131, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 129 0.98
28 1 0.01
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (26 bp):
AGTAATTTTGTAAATCGAGGGTAAAA
Found at i:78124298 original size:54 final size:54
Alignment explanation
Indices: 78124240--78124416 Score: 205
Period size: 54 Copynumber: 3.3 Consensus size: 54
78124230 AGGGTATTTT
* * *
78124240 AGTAATTTTGTAAATCGAGGGTAAAA-TAGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAACGA-TAATTATGTAAATCGAGGGTAAAAC
* * * * *
78124294 AGTAATTCTATAAATCGACGATAAAACGATAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAAC
* * *
78124348 -GATAATTTTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTTTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAAC
* *
78124402 GGTAATTATGTAAAT
1 AGTAATTTTGTAAAT
78124417 TAGGGGTACT
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 1 0.01
54 100 0.97
55 2 0.02
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (54 bp):
AGTAATTTTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGAGGGTAAAAC
Found at i:78124400 original size:81 final size:81
Alignment explanation
Indices: 78124242--78124391 Score: 214
Period size: 81 Copynumber: 1.9 Consensus size: 81
78124232 GGTATTTTAG
* *
78124242 TAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAA
1 TAATTTTGTAAATCGAGGGTAAAAGAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTATATAA
78124307 ATCGACGATAAAACGA
66 ATCGACGATAAAACGA
* * * *
78124323 TAATTTTGTAAATCGAGGGTAAAACGA-TAATTTTGTAAGTCGAGGGTAAAAC-GATAATTATGT
1 TAATTTTGTAAATCGAGGGTAAAA-GAGTAATTCTGTAAATCAAGGGTAAAACAG-TAATTATAT
78124386 AAATCG
64 AAATCG
78124392 GGGGTAAAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
80 1 0.02
81 59 0.97
82 1 0.02
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.30
Consensus pattern (81 bp):
TAATTTTGTAAATCGAGGGTAAAAGAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTATATAA
ATCGACGATAAAACGA
Found at i:78124408 original size:81 final size:81
Alignment explanation
Indices: 78124241--78124416 Score: 212
Period size: 81 Copynumber: 2.2 Consensus size: 81
78124231 GGGTATTTTA
* *
78124241 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAAGAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTATATA
78124306 AATCGACGATAAAACG
66 AATCGACGATAAAACG
* * * * *
78124322 ATAATTTTGTAAATCGAGGGTAAAACGA-TAATTTTGTAAGTCGAGGGTAAAAC-GATAATTATG
1 GTAATTTTGTAAATCGAGGGTAAAA-GAGTAATTCTGTAAATCAAGGGTAAAACAG-TAATTATA
** * *
78124385 TAAATCGGGGGTAAAATG
64 TAAATCGACGATAAAACG
*
78124403 GTAATTATGTAAAT
1 GTAATTTTGTAAAT
78124417 TAGGGGTACT
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
80 1 0.01
81 78 0.98
82 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.30
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAAGAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTATATA
AATCGACGATAAAACG
Found at i:78124478 original size:27 final size:27
Alignment explanation
Indices: 78124430--78124519 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
78124420 GGGTACTTTG
* * *
78124430 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATTGAGGGTATTTCA
78124457 GTAATTTTACAAATTGAGGGTATTTCA
1 GTAATTTTACAAATTGAGGGTATTTCA
* * * * *
78124484 GTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAAATTGAGGGTATTTCA
78124511 GTAATTTTA
1 GTAATTTTA
78124520 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAATTGAGGGTATTTCA
Found at i:78124533 original size:27 final size:27
Alignment explanation
Indices: 78124430--78124534 Score: 97
Period size: 27 Copynumber: 3.9 Consensus size: 27
78124420 GGGTACTTTG
* *
78124430 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* * *
78124457 GTAATTTTACAAATTGAGGGTATTTCA
1 GTAATTTTACAAACTAAGAGTATTTCA
* * *
78124484 GTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
78124511 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
78124535 CTAAACAGGG
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
26 2 0.03
27 55 0.86
28 7 0.11
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:78127345 original size:31 final size:31
Alignment explanation
Indices: 78127301--78127359 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
78127291 ATATTTCATT
78127301 TTTCATAACACTGGGCCGAAGCCTTTACATA
1 TTTCATAACACTGGGCCGAAGCCTTTACATA
**
78127332 TTTCATATTACTGGGCCGAAGCCTTTAC
1 TTTCATAACACTGGGCCGAAGCCTTTAC
78127360 TGTAAACGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.32
Consensus pattern (31 bp):
TTTCATAACACTGGGCCGAAGCCTTTACATA
Found at i:78127603 original size:24 final size:24
Alignment explanation
Indices: 78127565--78127715 Score: 191
Period size: 24 Copynumber: 6.4 Consensus size: 24
78127555 CTAGAGGCCT
* *
78127565 AGCCTCTTTTAATAATTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
78127590 AGCCCTTTTTATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
78127614 AGCCC-TTTAATAAAT-GGGCGTA
1 AGCCCTTTTAATAACTGGGGCATA
* *
78127636 AGCCCTTTTGATAACTGGGGTATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
78127660 AGACCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
78127684 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
78127707 AGCCCTTTT
1 AGCCCTTTT
78127716 TCGCTTCCTC
Statistics
Matches: 109, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
22 11 0.10
23 38 0.35
24 56 0.51
25 4 0.04
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:78127683 original size:70 final size:71
Alignment explanation
Indices: 78127565--78127715 Score: 214
Period size: 70 Copynumber: 2.1 Consensus size: 71
78127555 CTAGAGGCCT
* * *
78127565 AGCCTCTTTTAATAATTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTAATAAAT-
1 AGCC-CTTTTAATAACTGGGGCAAAAGACCTTTTGATAACTGGGGCATAAGCCCTTTAATAAATG
*
78127629 GGGCGTA
65 GGGCATA
* * * *
78127636 AGCCCTTTTGATAACTGGGGTATAAGACCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
1 AGCCCTTTTAATAACTGGGGCAAAAGACCTTTTGATAACTGGGGCATAAGCCCTTTAATAAATGG
78127701 GGCATA
66 GGCATA
78127707 AGCCCTTTT
1 AGCCCTTTT
78127716 TCGCTTCCTC
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
70 52 0.73
71 19 0.27
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (71 bp):
AGCCCTTTTAATAACTGGGGCAAAAGACCTTTTGATAACTGGGGCATAAGCCCTTTAATAAATGG
GGCATA
Found at i:78127790 original size:20 final size:20
Alignment explanation
Indices: 78127765--78127831 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
78127755 TTATGATTAC
78127765 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
78127785 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
78127805 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
78127825 ACCATGT
1 ATCATGT
78127832 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:78127796 original size:11 final size:11
Alignment explanation
Indices: 78127765--78127820 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
78127755 TTATGATTAC
78127765 ATCATGTGCAT
1 ATCATGTGCAT
*
78127776 ATCA--TACAT
1 ATCATGTGCAT
78127785 ATCATGTGCAT
1 ATCATGTGCAT
*
78127796 ATCA--TACAT
1 ATCATGTGCAT
*
78127805 GTCATGTGCAT
1 ATCATGTGCAT
78127816 ATCAT
1 ATCAT
78127821 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:78127914 original size:25 final size:25
Alignment explanation
Indices: 78127868--78127915 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
78127858 ATACATAAAC
* * * *
78127868 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
78127893 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
78127916 CATGTTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:78129108 original size:27 final size:27
Alignment explanation
Indices: 78129074--78129151 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
78129064 GGGCATATTC
*
78129074 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
78129101 GTCATTTTACCCTACAGGGGT-TTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
78129127 TTCACTTTACCCTAATAGGGGTATT
1 GTCATTTTACCCT-ACAGGGGTATT
78129152 TTAGTCATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
26 16 0.36
27 27 0.60
28 2 0.04
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:78129222 original size:27 final size:27
Alignment explanation
Indices: 78129192--78129394 Score: 117
Period size: 27 Copynumber: 7.4 Consensus size: 27
78129182 GTAAATCAAC
*
78129192 AAACCAAAGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
78129219 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
78129245 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* ** **
78129275 AAATC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTCAGTAATTTTGT
* * ** **
78129302 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
78129329 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* * ** *
78129356 AAATCGAGGGTAAAAT-AGTAATTCTGT
1 AAACCAAGGGT-ATTTCAGTAATTTTGT
*
78129383 AAATCAAGGGTA
1 AAACCAAGGGTA
78129395 AAACAGTAAT
Statistics
Matches: 143, Mismatches: 24, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
26 4 0.03
27 111 0.78
28 10 0.07
29 17 0.12
30 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:78129556 original size:27 final size:27
Alignment explanation
Indices: 78129346--78129548 Score: 217
Period size: 27 Copynumber: 7.5 Consensus size: 27
78129336 GGGTATTTTA
* **
78129346 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
78129373 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
78129400 GTAATTCTATAAATCGACGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
78129427 ATAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
78129454 ATAATTTTGTAAGTCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
78129481 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
78129508 GTAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
78129535 GTAATTCTGTAAAT
1 GTAATTCTGTAAAT
78129549 TGTGGGTACT
Statistics
Matches: 154, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 154 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:78129556 original size:81 final size:81
Alignment explanation
Indices: 78129346--78129548 Score: 262
Period size: 81 Copynumber: 2.5 Consensus size: 81
78129336 GGGTATTTTA
* * * *
78129346 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAATAATTATATA
78129411 AATCGACGATAAAACG
66 AATCGACGATAAAACG
* * * * * *
78129427 ATAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAGTCGAGGGTAAAACAATAATTATGTA
1 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAATAATTATATA
** * *
78129492 AATCGGGGGTAAAATG
66 AATCGACGATAAAACG
* *
78129508 GTAATTATGTAAATCGGGGGTAAAATGGTAATTCTGTAAAT
1 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAAT
78129549 TGTGGGTACT
Statistics
Matches: 101, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 101 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAATAATTATATA
AATCGACGATAAAACG
Found at i:78129638 original size:27 final size:27
Alignment explanation
Indices: 78129563--78129651 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
78129553 GGTACTTTGT
* *
78129563 TAATTTTACAAGTCGAAGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAG
78129590 TAATTTTACAAATCGAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAG
* * *
78129617 TATTTTTACAAA-CTAGGCGTATTTCGG
1 TAATTTTACAAATCGAGG-GTATTTCAG
78129644 TAATTTTA
1 TAATTTTA
78129652 GTGAACTAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTCAG
Found at i:78130860 original size:43 final size:42
Alignment explanation
Indices: 78130753--78130882 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 42
78130743 ACATTACGCT
*
78130753 ATCGAGATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACA-TGGC
* * * * * *
78130796 ATTGTTAAT-CGATTTCGTGTAAGACCCTGTCTGGGACAGTGGC
1 ATCGAT-ATGTGATTACATGTAAGACCATGTCTGGGACA-TGGC
* * *
78130839 ATCGATATGTGATAACATGTAAGACCATATCTGGGATATGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATGGC
78130881 AT
1 AT
78130883 TGTACGAGCT
Statistics
Matches: 68, Mismatches: 17, Indels: 5
0.76 0.19 0.06
Matches are distributed among these distances:
42 8 0.12
43 58 0.85
44 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATGGC
Found at i:78131969 original size:23 final size:22
Alignment explanation
Indices: 78131934--78131978 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
78131924 AAAGTCAGAA
*
78131934 TACCCTAAATTTATACATATTTT
1 TACCCTAAATTTA-ACACATTTT
**
78131957 TACCCTATGTTTAACACATTTT
1 TACCCTAAATTTAACACATTTT
78131979 ATGGATGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.31, C:0.20, G:0.02, T:0.47
Consensus pattern (22 bp):
TACCCTAAATTTAACACATTTT
Found at i:78146462 original size:11 final size:11
Alignment explanation
Indices: 78146446--78146472 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
78146436 TAGAAATTAG
78146446 TTTGTGAAACT
1 TTTGTGAAACT
78146457 TTTGTGAAACT
1 TTTGTGAAACT
78146468 TTTGT
1 TTTGT
78146473 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:78148005 original size:92 final size:92
Alignment explanation
Indices: 78147869--78148062 Score: 286
Period size: 92 Copynumber: 2.1 Consensus size: 92
78147859 TTGATTTTAG
* *
78147869 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
*
78147933 TAT-TAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
78147960 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
78148025 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
78148053 CAAATTCATA
1 TAAATTCATA
78148063 AACTATAATC
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
91 17 0.18
92 43 0.46
93 30 0.32
94 3 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:78148111 original size:49 final size:53
Alignment explanation
Indices: 78148041--78148139 Score: 118
Period size: 53 Copynumber: 1.9 Consensus size: 53
78148031 ATAATTATTA
78148041 TTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATAAT
1 TTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATAAT
* * **
78148090 TTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 TTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
78148140 CATATATTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
49 16 0.39
50 5 0.12
51 1 0.02
52 1 0.02
53 18 0.44
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.47
Consensus pattern (53 bp):
TTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATAAT
Found at i:78148121 original size:17 final size:17
Alignment explanation
Indices: 78148096--78148129 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
78148086 TAATTTTTAA
*
78148096 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
78148113 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
78148130 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:78148146 original size:17 final size:16
Alignment explanation
Indices: 78148101--78148148 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
78148091 TTTAAATTTT
78148101 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
78148118 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
78148132 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
78148149 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:78148220 original size:18 final size:17
Alignment explanation
Indices: 78148189--78148223 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
78148179 ATTATTAAGA
78148189 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
78148206 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
78148224 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:78148289 original size:129 final size:130
Alignment explanation
Indices: 78148136--78148369 Score: 416
Period size: 129 Copynumber: 1.8 Consensus size: 130
78148126 ATATTAGTTA
*
78148136 TAATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
* *
78148201 TATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
*
78148266 TAATAATA-ATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
*
78148330 TATATATTTTAATTAAAATATATTTAATAGTAATTATGTT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT
78148370 TAAATATGAT
Statistics
Matches: 99, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
129 92 0.93
130 7 0.07
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.49
Consensus pattern (130 bp):
TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
Found at i:78148346 original size:18 final size:17
Alignment explanation
Indices: 78148318--78148352 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
78148308 ATTATTAAGA
*
78148318 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
78148335 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
78148353 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:78148473 original size:125 final size:127
Alignment explanation
Indices: 78148327--78148558 Score: 389
Period size: 125 Copynumber: 1.8 Consensus size: 127
78148317 AATTTTATTA
* *
78148327 AATTATATATTTTAATTAAAATATATTTAATAGTAATTATGTTTAAATATGATTAAATTATATTA
1 AATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAAATATGATTAAATTAT-TTA
78148392 TTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTACCAAAACAAATTTCTGCT
65 TTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTACCAAAACAAATTTCTGCT
78148452 AATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAAATATGATTAAATTATTTAT
1 AATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAAATATGATTAAATTATTTAT
*
78148517 TTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 TATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
78148559 CAATAATCAT
Statistics
Matches: 99, Mismatches: 3, Indels: 6
0.92 0.03 0.06
Matches are distributed among these distances:
124 10 0.10
125 61 0.62
128 23 0.23
129 5 0.05
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (127 bp):
AATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTTAAATATGATTAAATTATTTAT
TATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTACCAAAACAAATTTCTGCT
Found at i:78148688 original size:44 final size:45
Alignment explanation
Indices: 78148639--78148733 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
78148629 TTACACCTCT
* *
78148639 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
78148683 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
78148728 ATTACA
1 ATTACA
78148734 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:78148733 original size:16 final size:16
Alignment explanation
Indices: 78148714--78148781 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
78148704 GATTTGCTAT
* *
78148714 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
78148730 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
78148746 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
78148762 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
78148778 TACA
1 TACA
78148782 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:78149954 original size:45 final size:45
Alignment explanation
Indices: 78149841--78149961 Score: 138
Period size: 45 Copynumber: 2.7 Consensus size: 45
78149831 TGATATGTGT
* * *
78149841 GCTAGTGTAAGACATGTCTGGGACATGCATTAGTCACAGTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCA-TAGGCAAAGTACGAGA
* * *
78149887 GCCAGTGTAAAACATATCTGGGACATGCAT-GGCATTAAG-ACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATAGGCA--AAGTACGAGA
*
78149932 GCTAGTGTAAGACATGTTTGGGACATGCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCAT
78149962 CGGCCTCGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
44 3 0.05
45 32 0.51
46 28 0.44
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATAGGCAAAGTACGAGA
Found at i:78150129 original size:48 final size:49
Alignment explanation
Indices: 78150027--78150145 Score: 134
Period size: 48 Copynumber: 2.4 Consensus size: 49
78150017 TGTAGTGTGT
** *
78150027 CAGTGTAAGACCTGTCTGGGATATGGTATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGATATGACATCGACACCGATAGATGAAAGC
* * **
78150076 CAGTGTAAGA-CTGTCTGGGATATGACATCGGC-CTCGCTCTATGAAAGC
1 CAGTGTAAGACCTGTCTGGGATATGACATCGACAC-CGATAGATGAAAGC
*
78150124 TAGTGTAAGACCATGTCTGGGA
1 CAGTGTAAGACC-TGTCTGGGA
78150146 CATGGCGTCG
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
47 1 0.02
48 38 0.64
49 11 0.19
50 9 0.15
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGATATGACATCGACACCGATAGATGAAAGC
Found at i:78152295 original size:48 final size:48
Alignment explanation
Indices: 78152221--78152446 Score: 212
Period size: 48 Copynumber: 4.8 Consensus size: 48
78152211 ACATGATAGG
* * * * *
78152221 ATGCCAATTCCATATCCCGGATATGGTCTTACATAGGATCACATATCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
** ** *
78152269 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGGTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
**
78152317 ATGCCAATGCCATGTCTTAGACATGGTCTTACATGGGATCACATATCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
* * **** *
78152365 ATGACGAT---A-G-CCCA-ACTATGGTCTTACACAAAATTACATATCA
1 ATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATCA
* *
78152408 ATGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGAT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
78152447 TGTATATAAC
Statistics
Matches: 138, Mismatches: 33, Indels: 14
0.75 0.18 0.08
Matches are distributed among these distances:
42 2 0.01
43 28 0.20
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 102 0.74
49 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCA
Found at i:78155821 original size:16 final size:16
Alignment explanation
Indices: 78155800--78155835 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
78155790 TTTGGTTCGC
78155800 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
78155816 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
78155832 TGTA
1 TGTA
78155836 ATAGCAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:78156088 original size:16 final size:16
Alignment explanation
Indices: 78156051--78156092 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
78156041 TTAATCATAT
*
78156051 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
78156067 TT-AAATATATTATAA
1 TTAAAATATATTATAA
78156082 TTAAAATATAT
1 TTAAAATATAT
78156093 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:78156099 original size:14 final size:15
Alignment explanation
Indices: 78156060--78156101 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
78156050 TTTAAACATA
*
78156060 ATTATTATTAAATAT
1 ATTATAATTAAATAT
78156075 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
78156089 A-TATAATTTAATA
1 ATTATAATTAAATA
78156102 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:78156198 original size:15 final size:15
Alignment explanation
Indices: 78156170--78156228 Score: 61
Period size: 15 Copynumber: 4.0 Consensus size: 15
78156160 ATAAAATATA
78156170 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
78156185 TATTAAATATATTAT
1 AATTAAATATATTAT
78156200 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
78156213 AATTTAATAATATTAT
1 AATTAAAT-ATATTAT
78156229 TAATAATCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
13 9 0.24
14 6 0.16
15 19 0.51
16 3 0.08
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:78156199 original size:120 final size:120
Alignment explanation
Indices: 78156054--78156535 Score: 752
Period size: 120 Copynumber: 4.0 Consensus size: 120
78156044 ATCATATTTA
* *
78156054 AACATAATTATTATTAAATAT-ATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCA
1 AACATAATTATTATTAAATATAATT-TAATAAAAATATATAATTTAATAAAATTCTTAATAATAA
* * *
78156118 ATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
65 ATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
* * * *
78156174 AACATAATTATTATTAAATAT-ATTATAATTAAAATATATAATTTAATAATATTATTAATAATCA
1 AACATAATTATTATTAAATATAATT-TAATAAAAATATATAATTTAATAAAATTCTTAATAATAA
* * * *
78156238 ATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAATTT
65 ATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
*
78156294 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA
1 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAA
* *
78156359 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATATAATATAATTT
66 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
* *
78156414 AAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA
1 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAA
* *
78156479 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATATAATATAGATT
66 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
78156534 AA
1 AA
78156536 TAATGTAGAT
Statistics
Matches: 346, Mismatches: 15, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
120 343 0.99
121 3 0.01
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAA
TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAAATT
Found at i:78156229 original size:44 final size:43
Alignment explanation
Indices: 78156147--78156231 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
78156137 CTCAAATCAT
* *
78156147 AATATATGATACTATAAAATATAAATTAACATAATTATTATTA
1 AATATATGATAATATAAAATATAAATTAAAATAATTATTATTA
* *
78156190 AATATATTATAAT-TAAAATATATAATT-TAATAA-TATTATTA
1 AATATATGATAATATAAAATATA-AATTAAAATAATTATTATTA
78156231 A
1 A
78156232 TAATCAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
41 9 0.24
42 13 0.35
43 15 0.41
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (43 bp):
AATATATGATAATATAAAATATAAATTAAAATAATTATTATTA
Found at i:78156375 original size:38 final size:37
Alignment explanation
Indices: 78156328--78156511 Score: 140
Period size: 37 Copynumber: 4.7 Consensus size: 37
78156318 TTAATAAAAA
*
78156328 TATATAATTTAATAAAATTCTTAATATTAAATATTCT
1 TATATAATTTAATAAAATTCTTAATATTAAATATTAT
*
78156365 TATATGAATTTAATAAAA-TCATAATA-TATAATACTATAT
1 TATAT-AATTTAATAAAATTCTTAATATTA-AATA-T-TAT
* * * * ** *
78156404 AATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAA
1 TATATAATTT--AATAA-AATTCTT--A-AT-ATTAAATATTAT
*
78156448 TATATAATTTAATAAAATTCTTAATATTAAATATTCT
1 TATATAATTTAATAAAATTCTTAATATTAAATATTAT
*
78156485 TATATGAATTTAATAAAA-TCATAATAT
1 TATAT-AATTTAATAAAATTCTTAATAT
78156512 ATAATACTAT
Statistics
Matches: 114, Mismatches: 19, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
36 2 0.02
37 36 0.32
38 32 0.28
39 7 0.06
40 5 0.04
41 6 0.05
42 7 0.06
44 11 0.10
45 2 0.02
46 5 0.04
47 1 0.01
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (37 bp):
TATATAATTTAATAAAATTCTTAATATTAAATATTAT
Found at i:78156477 original size:18 final size:18
Alignment explanation
Indices: 78156311--78156464 Score: 76
Period size: 18 Copynumber: 8.9 Consensus size: 18
78156301 TTATTATTAA
78156311 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
*
78156329 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAAAT
* ****
78156347 CT-TAATATTAAATATTCTT
1 ATATAAT-TT-AATAAAAAT
78156366 ATATGAATTTAAT-AAAAT
1 ATAT-AATTTAATAAAAAT
* * * *
78156384 -CATAATAT-ATAATACT
1 ATATAATTTAATAAAAAT
* *
78156400 ATATAATATAATTTAAAAT
1 ATATAATTTAA-TAAAAAT
* *
78156419 A-ATTA-TT-AT--TAA-
1 ATATAATTTAATAAAAAT
78156431 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
78156449 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
78156465 TTCTTAATAT
Statistics
Matches: 99, Mismatches: 23, Indels: 28
0.66 0.15 0.19
Matches are distributed among these distances:
12 1 0.01
13 5 0.05
14 2 0.02
15 5 0.05
16 8 0.08
17 16 0.16
18 41 0.41
19 15 0.15
20 3 0.03
21 3 0.03
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.42
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:78161032 original size:11 final size:11
Alignment explanation
Indices: 78161012--78161041 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
78161002 CTTTTATGCT
78161012 TATCATTATTG
1 TATCATTATTG
*
78161023 TATTATTATTG
1 TATCATTATTG
78161034 TATCATTA
1 TATCATTA
78161042 ACTTTATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (11 bp):
TATCATTATTG
Found at i:78162791 original size:27 final size:27
Alignment explanation
Indices: 78162754--78162808 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
78162744 TAGCCAATGG
78162754 TGGTGTCCTGCAAGCAGTTCAACCTTA
1 TGGTGTCCTGCAAGCAGTTCAACCTTA
78162781 TGGTGTCCTGCAAGCAGTTCAACCTTA
1 TGGTGTCCTGCAAGCAGTTCAACCTTA
78162808 T
1 T
78162809 CTACTAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (27 bp):
TGGTGTCCTGCAAGCAGTTCAACCTTA
Found at i:78162906 original size:8 final size:8
Alignment explanation
Indices: 78162893--78162918 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
78162883 TATATTTTAT
78162893 TATAATTA
1 TATAATTA
78162901 TATAATTA
1 TATAATTA
78162909 TATAATTA
1 TATAATTA
78162917 TA
1 TA
78162919 ATATCTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
TATAATTA
Found at i:78163922 original size:53 final size:53
Alignment explanation
Indices: 78163864--78163969 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
78163854 TTTAGGTCTT
78163864 AAACTTAATTACTGTCTCAAAGGGTAATTAAGACAAACTAAATCATATCTTCG
1 AAACTTAATTACTGTCTCAAAGGGTAATTAAGACAAACTAAATCATATCTTCG
78163917 AAACTTAATTACTGTCTCAAAGGGTAATTAAGACAAACTAAATCATATCTTCG
1 AAACTTAATTACTGTCTCAAAGGGTAATTAAGACAAACTAAATCATATCTTCG
78163970 TTTATTACTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.30
Consensus pattern (53 bp):
AAACTTAATTACTGTCTCAAAGGGTAATTAAGACAAACTAAATCATATCTTCG
Found at i:78167887 original size:124 final size:122
Alignment explanation
Indices: 78167671--78167965 Score: 429
Period size: 124 Copynumber: 2.4 Consensus size: 122
78167661 AAGTGTTTGA
*
78167671 AAAACTACGATAGAATCTTTTGGTACAATCATTCAACAAATACAA---AAAAAAGGGTAATATGT
1 AAAACTACGATAGAATCTTTTGGTACAATCATTCAACAAATA-AAGGGAAAAAAGGGTAAAATGT
* * *
78167733 AAGTAAAGGAGTAAAGTAAATAGTGTAAATTTTGTTTTGAAGTGTTTGGAAAAATTGG
65 AAGTAAAGGAGTAAAGTAAATAGAGTAAATTTTGTTTTGAAGTATTTGAAAAAATTGG
**
78167791 AAAACTGTGATAGAATCTTTTGGTACAATCATTCAACAAATAAAGGGGAAAAAAGGGGTAAAATG
1 AAAACTACGATAGAATCTTTTGGTACAATCATTCAACAAATAAA-GGGAAAAAA-GGGTAAAATG
78167856 TAAGTAAAGG-GCTAAAGTAAACTA-AGTAAATTTTGTTTTGAAGTATTTGAAAAAATTGG
64 TAAGTAAAGGAG-TAAAGTAAA-TAGAGTAAATTTTGTTTTGAAGTATTTGAAAAAATTGG
* * *
78167915 AAAACTACAATAGAATCTTTTAGTACAATCATTCAAAAAATAAAGGGAAAA
1 AAAACTACGATAGAATCTTTTGGTACAATCATTCAACAAATAAAGGGAAAA
78167966 TTTTGAGTAT
Statistics
Matches: 157, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
119 2 0.01
120 40 0.25
123 14 0.09
124 99 0.63
125 2 0.01
ACGTcount: A:0.46, C:0.07, G:0.18, T:0.28
Consensus pattern (122 bp):
AAAACTACGATAGAATCTTTTGGTACAATCATTCAACAAATAAAGGGAAAAAAGGGTAAAATGTA
AGTAAAGGAGTAAAGTAAATAGAGTAAATTTTGTTTTGAAGTATTTGAAAAAATTGG
Found at i:78168496 original size:19 final size:21
Alignment explanation
Indices: 78168461--78168505 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
78168451 ATTTATGTTT
*
78168461 CATT-TTTTGAAT-TTTTTTA
1 CATTATTTTGAATGTTTTATA
78168480 CATTATTTT-AATGTTTTATA
1 CATTATTTTGAATGTTTTATA
78168500 -ATTATT
1 CATTATT
78168506 ATTTTATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.64
Consensus pattern (21 bp):
CATTATTTTGAATGTTTTATA
Found at i:78168515 original size:49 final size:48
Alignment explanation
Indices: 78168433--78168525 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
78168423 TTTTGTGGTG
*
78168433 TTATTTATAAGTATTATAATTTATGTTTCATTTTTTGAATTTTTTTACA
1 TTATTTATAAGTATTATAATTTATGTTTCA-TTTTTGAATATTTTTACA
*
78168482 TTATTT-TAATGTTTTATAATTATTAT-TTT-ATTTTTGAATATTTT
1 TTATTTATAA-GTATTATAA-T-TTATGTTTCATTTTTGAATATTTT
78168526 GCTATTTGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
48 16 0.41
49 15 0.38
50 4 0.10
51 4 0.10
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (48 bp):
TTATTTATAAGTATTATAATTTATGTTTCATTTTTGAATATTTTTACA
Found at i:78171016 original size:42 final size:42
Alignment explanation
Indices: 78170957--78171082 Score: 162
Period size: 42 Copynumber: 3.0 Consensus size: 42
78170947 GCCTACATGA
* * *
78170957 GCAGAGACAGGGGCATGTGTCTCAGTCATGTGTGACACACGG
1 GCAGAGACACGGGCATGTGTCTCAGTCGTGTATGACACACGG
* * **
78170999 GCAGAAACATGGGCATGTGTCTCAACCGTGTATGACACACGG
1 GCAGAGACACGGGCATGTGTCTCAGTCGTGTATGACACACGG
* * *
78171041 GCTGAGATACGGGCATGTCTCTCAGTCGTGTATGACACACGG
1 GCAGAGACACGGGCATGTGTCTCAGTCGTGTATGACACACGG
78171083 TTTTGTTACA
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.25, C:0.23, G:0.32, T:0.21
Consensus pattern (42 bp):
GCAGAGACACGGGCATGTGTCTCAGTCGTGTATGACACACGG
Found at i:78175809 original size:47 final size:47
Alignment explanation
Indices: 78175757--78176208 Score: 735
Period size: 47 Copynumber: 9.6 Consensus size: 47
78175747 GATAATTGTG
* *
78175757 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
78175804 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
78175851 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
78175898 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
78175947 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
78175994 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
78176041 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
78176090 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
78176137 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
78176184 ATGTGAAAGTGTATA-ATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
78176209 TCCCGAAGGG
Statistics
Matches: 380, Mismatches: 21, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
46 8 0.02
47 281 0.74
49 91 0.24
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:78175864 original size:96 final size:94
Alignment explanation
Indices: 78175757--78176208 Score: 735
Period size: 96 Copynumber: 4.8 Consensus size: 94
78175747 GATAATTGTG
* *
78175757 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
78175822 GTGATAAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
* *
78175851 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
78175916 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
78175947 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
78176012 GTGATGAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
78176041 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
78176106 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
78176137 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-AT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
78176201 GTGATAAG
66 GTGATAAG
78176209 TCCCGAAGGG
Statistics
Matches: 336, Mismatches: 18, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
93 10 0.03
94 144 0.43
96 182 0.54
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:78175920 original size:143 final size:143
Alignment explanation
Indices: 78175757--78176198 Score: 789
Period size: 143 Copynumber: 3.1 Consensus size: 143
78175747 GATAATTGTG
78175757 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
78175820 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
78175885 GCCAATGTGATGA
131 GCCAATGTGATGA
78175898 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
78175963 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
*
78176028 GCCGATGTGATGA
131 GCCAATGTGATGA
78176041 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
78176106 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* *
78176171 GCCAACGTGATGG
131 GCCAATGTGATGA
78176184 ATGTGAAAGTGTATA
1 ATGTGAAAGTGTATA
78176199 ATGTGATAAG
Statistics
Matches: 287, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
141 5 0.02
142 2 0.01
143 280 0.98
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCAATGTGATGA
Found at i:78178000 original size:41 final size:40
Alignment explanation
Indices: 78177946--78178106 Score: 141
Period size: 41 Copynumber: 3.9 Consensus size: 40
78177936 CTTAACACCA
*
78177946 GCTCAAAATCCCTTCGAGACCAAGCTCGGATTAGACTACTG
1 GCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGAC-ACTG
* * *
78177987 GCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-TTATGACACTG
1 GCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGATTA-GACACTG
* * * *
78178027 GCTCTAAAAAGCCCTTAGAAACTAAGTTCGGTTATTAG-CACTG
1 GCTC--AAAAGCCCTTCGAGACCAAGCTCGG--ATTAGACACTG
78178070 GCTCAAAAGCCCTTCGAGACCAAGCTCGGATTTAGAC
1 GCTCAAAAGCCCTTCGAGACCAAGCTCGGA-TTAGAC
78178107 CCCGATTAGC
Statistics
Matches: 96, Mismatches: 12, Indels: 24
0.73 0.09 0.18
Matches are distributed among these distances:
39 1 0.01
40 17 0.18
41 46 0.48
42 18 0.19
43 10 0.10
44 1 0.01
45 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
GCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACACTG
Found at i:78178050 original size:42 final size:41
Alignment explanation
Indices: 78177983--78178083 Score: 123
Period size: 42 Copynumber: 2.4 Consensus size: 41
78177973 GGATTAGACT
* * * *
78177983 ACTGGCTCGAAGGCCCTTCGGAACTAAGTCCGGTTATGA-C
1 ACTGGCTCAAAAGCCCTTAGAAACTAAGTCCGGTTATGAGC
* *
78178023 ACTGGCTCTAAAAAGCCCTTAGAAACTAAGTTCGGTTATTAGC
1 ACTGGCTC--AAAAGCCCTTAGAAACTAAGTCCGGTTATGAGC
78178066 ACTGGCTCAAAAGCCCTT
1 ACTGGCTCAAAAGCCCTT
78178084 CGAGACCAAG
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
40 8 0.15
41 10 0.19
42 25 0.48
43 9 0.17
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.25
Consensus pattern (41 bp):
ACTGGCTCAAAAGCCCTTAGAAACTAAGTCCGGTTATGAGC
Found at i:78181255 original size:45 final size:45
Alignment explanation
Indices: 78181191--78181365 Score: 250
Period size: 45 Copynumber: 4.0 Consensus size: 45
78181181 GGTGTTACAG
*
78181191 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
78181236 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
78181281 TACTCTTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
78181326 TGA-TA-TCGGG-CTTCGAGCCTAGCAGG-AAAAATGCCGGTGA
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
78181366 ATGAATTCGG
Statistics
Matches: 121, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
42 12 0.10
43 16 0.13
44 4 0.03
45 88 0.73
46 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:78184746 original size:26 final size:26
Alignment explanation
Indices: 78184717--78184824 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
78184707 TGGAACAAAT
78184717 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
78184743 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78184769 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
78184795 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78184821 TGAT
1 TGAT
78184825 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:78186483 original size:27 final size:26
Alignment explanation
Indices: 78186443--78186579 Score: 184
Period size: 27 Copynumber: 5.1 Consensus size: 26
78186433 AGGAAGTGTC
*
78186443 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
78186470 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
78186497 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
78186524 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
78186551 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
78186578 CT
1 CT
78186580 AGTGACTTCG
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
26 10 0.10
27 86 0.88
28 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:78186525 original size:54 final size:53
Alignment explanation
Indices: 78186443--78186579 Score: 229
Period size: 54 Copynumber: 2.5 Consensus size: 53
78186433 AGGAAGTGTC
78186443 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
78186497 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
78186551 CTGGTGGCTCTGCCACAATATCTGTATCT
1 CTGGTGGCTATGCCACATTATCTG-ATCT
78186580 AGTGACTTCG
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
53 7 0.09
54 72 0.91
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:78191801 original size:26 final size:26
Alignment explanation
Indices: 78191772--78191879 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
78191762 TGGTACAAAT
78191772 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
78191798 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78191824 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
78191850 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
78191876 TGAT
1 TGAT
78191880 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:78193372 original size:28 final size:26
Alignment explanation
Indices: 78193316--78193391 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 26
78193306 AAAAGTAGCT
* * * *
78193316 AAATTACGATAATACCCCTATGTATAA
1 AAATTACCATTATACCCCTAGGTA-CA
* *
78193343 AAACTTACTATTATACCCCTAGGTGCA
1 AAA-TTACCATTATACCCCTAGGTACA
*
78193370 AAATTACCGTTATACCCCTAGG
1 AAATTACCATTATACCCCTAGG
78193392 GTTAATTTTG
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
26 17 0.41
27 7 0.17
28 17 0.41
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.29
Consensus pattern (26 bp):
AAATTACCATTATACCCCTAGGTACA
Found at i:78193535 original size:27 final size:26
Alignment explanation
Indices: 78193495--78193635 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 26
78193485 AGGAAGTGTC
*
78193495 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
78193522 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
78193549 CTGGTGGCTATGCCACGGTTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
78193576 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
78193603 CTAGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
78193630 CTGGTG
1 CTGGTG
78193636 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 9 0.09
27 88 0.90
28 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:78193577 original size:54 final size:53
Alignment explanation
Indices: 78193495--78193635 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 53
78193485 AGGAAGTGTC
78193495 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
78193549 CTGGTGGCTATGCCACGGTTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
78193603 CTAGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
78193636 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.08
54 74 0.93
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:78197487 original size:20 final size:20
Alignment explanation
Indices: 78197462--78197513 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
78197452 GTGTGGTCAC
78197462 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
78197482 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
78197502 ACACGCCCGTGT
1 ACACGCCCGTGT
78197514 CCTTAGCCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.12, C:0.33, G:0.37, T:0.19
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:78202507 original size:48 final size:48
Alignment explanation
Indices: 78202456--78202629 Score: 237
Period size: 48 Copynumber: 3.6 Consensus size: 48
78202446 CATCCGTGCC
* * *
78202456 GATGCCATGTTCCAGACATGGTCTTACACTGGCACACATACCATCATC-
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA-CAGCA
* *
78202504 GATGCCATGTCCCAGACATGGTCTTACATTGGCACACATATCAAAGCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCACAGCA
*
78202552 GATGCCATGTCCCAGACATGGTCTTACACTGGCACAGATATCA-ACGCTA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCACA-GC-A
*
78202601 -ATGCCATGTCCCAGACATGGTTTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
78202630 AGCTCTCATC
Statistics
Matches: 115, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 3 0.03
48 111 0.97
49 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCACAGCA
Found at i:78202652 original size:48 final size:48
Alignment explanation
Indices: 78202457--78202675 Score: 233
Period size: 48 Copynumber: 4.6 Consensus size: 48
78202447 ATCCGTGCCG
* * * * ** *
78202457 ATGCCATGTTCCAGACATGGTCTTACACTGGCACACATACCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCA
* * *
78202505 ATGCCATGTCCCAGACATGGTCTTACATTGGCACACATATCAAAG-CA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCA
* * *
78202552 GATGCCATGTCCCAGACATGGTCTTACACTGGCACAGATATCAACGCTA
1 -ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCA
* * * * ** *
78202601 ATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATCTGGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCA
*
78202649 ATGCCATATCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
78202676 TGAGACCTCA
Statistics
Matches: 146, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
47 1 0.01
48 144 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCA
Found at i:78202653 original size:96 final size:96
Alignment explanation
Indices: 78202452--78202675 Score: 263
Period size: 96 Copynumber: 2.3 Consensus size: 96
78202442 CTCACATCCG
* * * *
78202452 TGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCACACATACCATCATCGATGCCATGTCCC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATACCAACATCAATGCCATGTCCC
* *
78202517 AGACATGGTCTTACATTGGCACACATATCAA
66 AGACATGGTCTTACACTAGCACACATATCAA
* * * *
78202548 AG-CAGATGCCATGTCCCAGACATGGTCTTACACTGGCACAGATATCAAC-GCTAATGCCATGTC
1 TGCCA-ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATACCAACATC-AATGCCATGTC
* * * * **
78202611 CCAGACATGGTTTTACACTAGCTCTCATCTGGA
64 CCAGACATGGTCTTACACTAGCACACATATCAA
*
78202644 TGCCAATGCCATATCCCAGACATGGTCTTACA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA
78202676 TGAGACCTCA
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
95 2 0.02
96 103 0.96
97 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (96 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATACCAACATCAATGCCATGTCCC
AGACATGGTCTTACACTAGCACACATATCAA
Found at i:78204883 original size:3 final size:3
Alignment explanation
Indices: 78204870--78204905 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
78204860 GTCAAAATAT
78204870 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
78204906 GTATACAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Done.