Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 239 of 325
Found at i:78208806 original size:21 final size:22
Alignment explanation
Indices: 78208767--78208820 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
78208757 AGATACATTG
*
78208767 CCTG-TTCACAC-GGTCGTGTC
1 CCTGCTTCACACGGGTCGTGTA
78208787 CCTGCTTCACACGGGT-GTGTA
1 CCTGCTTCACACGGGTCGTGTA
78208808 CCT-CTATCACACG
1 CCTGCT-TCACACG
78208821 ACCATGTGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 6 0.20
21 21 0.70
22 3 0.10
ACGTcount: A:0.15, C:0.35, G:0.22, T:0.28
Consensus pattern (22 bp):
CCTGCTTCACACGGGTCGTGTA
Found at i:78209660 original size:92 final size:92
Alignment explanation
Indices: 78209308--78209631 Score: 441
Period size: 92 Copynumber: 3.5 Consensus size: 92
78209298 ACCGATATTA
78209308 GTATAGCAGATTACCGCATTGCACTGTACCGCATGTACGTTAGCTACGCTACGTACCTTTGACTG
1 GTATAGCAGATTACCGCATTGCACTGTACCGCATGTACGTTAGCTACGCTACGTACCTTTGACTG
* * *
78209373 AACTGGCAATTTTACTGCAGCCTATCG
66 AACTGACAGTTTTACTGCAACCTATCG
* * ** * *
78209400 GTATAGCGGATTACTGCATTGCACTGTATTGCATTTACGTTAGCTATGCTACGTACCTTTGACTG
1 GTATAGCAGATTACCGCATTGCACTGTACCGCATGTACGTTAGCTACGCTACGTACCTTTGACTG
**
78209465 AACTGACAGTTTTACTGCAATGTATCG
66 AACTGACAGTTTTACTGCAACCTATCG
* * * * * * * *
78209492 ATATAGCGGATTACTGCATTGCACTGTATCGCATGTATGTTAGCTAAGCTACGTGCCGTTGACTG
1 GTATAGCAGATTACCGCATTGCACTGTACCGCATGTACGTTAGCTACGCTACGTACCTTTGACTG
* *
78209557 AACTAATAGTTTTACTGCAACCTATCG
66 AACTGACAGTTTTACTGCAACCTATCG
* *
78209584 GTATAGCAGATTACCGTATTGCACTGTACCGCATGTATGTTAGCTACG
1 GTATAGCAGATTACCGCATTGCACTGTACCGCATGTACGTTAGCTACG
78209632 TTACATACTA
Statistics
Matches: 204, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
92 204 1.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (92 bp):
GTATAGCAGATTACCGCATTGCACTGTACCGCATGTACGTTAGCTACGCTACGTACCTTTGACTG
AACTGACAGTTTTACTGCAACCTATCG
Found at i:78211931 original size:26 final size:26
Alignment explanation
Indices: 78211876--78211998 Score: 187
Period size: 26 Copynumber: 4.8 Consensus size: 26
78211866 CTCTTTTAAT
* *
78211876 AACTGGGGCA-AAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
78211901 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
78211927 CACTGGGGCATAAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
78211953 AACTAGGGCATAAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCGATA
78211979 AACTGGGGCATAA-CCCTTTT
1 AACTGGGGCATAAGCCCTTTT
78211999 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
25 17 0.19
26 72 0.81
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGATA
Found at i:78212073 original size:20 final size:20
Alignment explanation
Indices: 78212048--78212104 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
78212038 TTATGAATTC
*
78212048 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATATCATATCA
*
78212067 TATCATGCGCATATCATATCA
1 -ATCATGTGCATATCATATCA
78212088 ATCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
78212105 CCACGTATCA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 10 0.30
20 21 0.64
21 2 0.06
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:78220012 original size:25 final size:26
Alignment explanation
Indices: 78219931--78220017 Score: 122
Period size: 26 Copynumber: 3.4 Consensus size: 26
78219921 TCTGGAGGAA
**
78219931 AAGCCCTTTTCGGTAAACTGGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
*
78219957 AAGCCCTTTTCGATAAACTGGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
* *
78219983 AAGCCTTTTTCAATAAACTAGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
78220009 -AGCCCTTTT
1 AAGCCCTTTT
78220018 GCACTTCCTC
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
25 8 0.14
26 48 0.86
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
AAGCCCTTTTCAATAAACTGGGGCAT
Found at i:78220092 original size:20 final size:20
Alignment explanation
Indices: 78220067--78220123 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
78220057 TTATGAATTC
*
78220067 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATATCATATCA
78220086 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
78220107 ATCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
78220124 CCACGTATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:78220176 original size:24 final size:25
Alignment explanation
Indices: 78220149--78220195 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
78220139 ATAATTAAAC
* *
78220149 CCTA-GGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAATAGTCATTTTTA
78220173 CCTAGGGGTAAAATAGTCATTTT
1 CCTAGGGGTAAAATAGTCATTTT
78220196 CATATTATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (25 bp):
CCTAGGGGTAAAATAGTCATTTTTA
Found at i:78227365 original size:46 final size:46
Alignment explanation
Indices: 78227315--78227490 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
78227305 TGGTTGAGCA
* *
78227315 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * * *
78227361 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
78227406 CATCCGAACTCGTTGAGTTGAGTCCGAGTTAACCTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
78227454 CCCGAGCTCGTTGAGTTGAGTCCTAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78227491 GCGGGTTGCA
Statistics
Matches: 101, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 4 0.04
45 4 0.04
46 58 0.57
47 27 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:78227471 original size:93 final size:93
Alignment explanation
Indices: 78227312--78227483 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
78227302 GGATGGTTGA
* * * * * *
78227312 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACCTATGGATGCAAACGCCCGAACTCATTGAGT
78227377 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
78227405 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACCTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACCTATGGATGCAAACGCCCGAACTCATTGAGT
*
78227470 TGAGTCCTAGTTCG
66 TGAGTCCGAGTTCG
78227484 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACCTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:78235260 original size:17 final size:17
Alignment explanation
Indices: 78235238--78235272 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
78235228 GATTATATGT
78235238 CTAAATGGGTGGAAGCC
1 CTAAATGGGTGGAAGCC
78235255 CTAAATGGGTGGAAGCC
1 CTAAATGGGTGGAAGCC
78235272 C
1 C
78235273 AAGCCTTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.20, G:0.34, T:0.17
Consensus pattern (17 bp):
CTAAATGGGTGGAAGCC
Found at i:78248731 original size:23 final size:24
Alignment explanation
Indices: 78248705--78248749 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
78248695 TACATCAGTG
*
78248705 AAAGA-TTTGTTG-ATTAGAAGCGT
1 AAAGAGTTTCTTGAATT-GAAGCGT
78248728 AAAGAGTTTCTTGAATTGAAGC
1 AAAGAGTTTCTTGAATTGAAGC
78248750 AGGGCAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.26
24 11 0.58
25 3 0.16
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.33
Consensus pattern (24 bp):
AAAGAGTTTCTTGAATTGAAGCGT
Found at i:78257073 original size:40 final size:39
Alignment explanation
Indices: 78256989--78257173 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
78256979 TCGAATGATG
* * * *
78256989 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
78257029 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
78257069 TCCGGGCTAAGCCCGAAGGCATTGGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
78257108 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
78257149 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
78257174 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78257125 original size:79 final size:79
Alignment explanation
Indices: 78257042--78257206 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
78257032 GGACTAAGAT
* *
78257042 CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTA-C
1 CCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATTGGAACGAG-TAGC
*
78257104 TAAATCCGGGTTAAGTC
64 TAAATCC-GGTTAAATC
* * *
78257121 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTA
1 CCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTGGAACGAGTAGCTA
* *
78257186 TATCCGGTTAAATT
66 AATCCGGTTAAATC
78257200 CCGAAGG
1 CCGAAGG
78257207 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
79 49 0.65
80 26 0.35
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTGGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:78265270 original size:39 final size:40
Alignment explanation
Indices: 78265162--78265346 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
78265152 TCGAATGATG
* * *
78265162 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
78265201 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
78265242 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
78265281 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
78265320 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
78265347 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:78265368 original size:79 final size:79
Alignment explanation
Indices: 78265217--78265379 Score: 197
Period size: 79 Copynumber: 2.1 Consensus size: 79
78265207 ACTAAGATCT
* **
78265217 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
*
78265282 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* * *
78265296 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTA
* *
78265359 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
78265375 GAAGG
1 GAAGG
78265380 TACGTGATTT
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
CCGGGTTAAATCCC
Found at i:78274528 original size:11 final size:11
Alignment explanation
Indices: 78274514--78274539 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
78274504 TTTAAATTAC
78274514 TTTTCTTTTTA
1 TTTTCTTTTTA
78274525 TTTTCTTTTTA
1 TTTTCTTTTTA
78274536 TTTT
1 TTTT
78274540 GGCATTTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTCTTTTTA
Found at i:78295395 original size:82 final size:81
Alignment explanation
Indices: 78295279--78295434 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
78295269 AAATTGTACA
* * * *
78295279 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
78295343 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
78295360 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
78295425 TGCGAGTTGA
65 TGCGAATTGA
78295435 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:78295402 original size:55 final size:52
Alignment explanation
Indices: 78295278--78295431 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
78295268 TAAATTGTAC
* *
78295278 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
78295331 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
78295386 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
78295432 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:78295436 original size:27 final size:27
Alignment explanation
Indices: 78295279--78295434 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
78295269 AAATTGTACA
*
78295279 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
78295306 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
78295333 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
78295360 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
78295388 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
78295415 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
78295435 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:78295445 original size:27 final size:27
Alignment explanation
Indices: 78295271--78295452 Score: 95
Period size: 27 Copynumber: 6.7 Consensus size: 27
78295261 CGGAGATTAA
*
78295271 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
78295298 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
78295325 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
78295352 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
78295380 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
78295407 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
78295434 ATTGTATAGCACTGAGTGT
1 ATTGTATAGCACTAAGTGT
78295453 CGGGCTCAAT
Statistics
Matches: 123, Mismatches: 24, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
26 1 0.01
27 93 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:78295446 original size:82 final size:81
Alignment explanation
Indices: 78295271--78295452 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
78295261 CGGAGATTAA
* * * *
78295271 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
78295336 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
78295352 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
78295416 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
78295434 ATTGTATAGCACTGAGTGT
1 ATTGTACAGCACTAAGTGT
78295453 CGGGCTCAAT
Statistics
Matches: 79, Mismatches: 20, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
81 21 0.27
82 58 0.73
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:78303292 original size:82 final size:81
Alignment explanation
Indices: 78303176--78303331 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
78303166 AAATTGTACA
* * * *
78303176 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
78303240 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
78303257 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
78303322 TGCGAGTTGA
65 TGCGAATTGA
78303332 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:78303299 original size:55 final size:52
Alignment explanation
Indices: 78303175--78303328 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
78303165 TAAATTGTAC
* *
78303175 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
78303228 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
78303283 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
78303329 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:78303333 original size:27 final size:27
Alignment explanation
Indices: 78303176--78303331 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
78303166 AAATTGTACA
*
78303176 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
78303203 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
78303230 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
78303257 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
78303285 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
78303312 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
78303332 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:78303342 original size:27 final size:27
Alignment explanation
Indices: 78303168--78303352 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
78303158 GCGGGATTAA
*
78303168 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
78303195 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
78303222 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
78303249 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
78303277 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
78303304 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
78303331 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
78303353 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:78303343 original size:82 final size:81
Alignment explanation
Indices: 78303168--78303352 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
78303158 GCGGGATTAA
* * * *
78303168 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
78303233 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
78303249 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
78303313 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
78303331 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
78303353 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:78307040 original size:68 final size:68
Alignment explanation
Indices: 78306890--78307047 Score: 160
Period size: 68 Copynumber: 2.3 Consensus size: 68
78306880 CTAGCCAATT
* * *
78306890 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
78306955 TTTA
65 CATA
* * *
78306959 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
78307021 CTACATA
63 C-ACATA
*
78307028 GTATCTCGTAGCTTTCTTGT
1 -TATCTCGTAGCTCTCTTGT
78307048 ACACATGATG
Statistics
Matches: 74, Mismatches: 10, Indels: 11
0.78 0.11 0.12
Matches are distributed among these distances:
68 35 0.47
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:78310007 original size:30 final size:30
Alignment explanation
Indices: 78309971--78310032 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
78309961 AATCGGAAGT
*
78309971 TTTGGCACTAAGTGTGCGATTTAAATTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
*
78310001 TTTGGCACTAAGTGTGCGATTTACACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
78310031 TT
1 TT
78310033 CGGCTATTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.37
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGCGATTTAAACTAGC
Found at i:78321903 original size:24 final size:24
Alignment explanation
Indices: 78321876--78321928 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
78321866 CTATATTCTC
78321876 AGATATTTAAATTTCTGTATAATG
1 AGATATTTAAATTTCTGTATAATG
78321900 AGATATTTAAATTTCTGTATAATG
1 AGATATTTAAATTTCTGTATAATG
78321924 AGATA
1 AGATA
78321929 ATCGATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.40, C:0.04, G:0.13, T:0.43
Consensus pattern (24 bp):
AGATATTTAAATTTCTGTATAATG
Found at i:78323201 original size:42 final size:44
Alignment explanation
Indices: 78323155--78323249 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 44
78323145 TCCCAGACAG
* *
78323155 GGTCTTACACG-AAATCA-AA-TATGATGCCAACGTACTAGACGT
1 GGTCTTACACGTAAATCATAAGT-TGATGCCAACGTACCAGACCT
* *
78323197 GGTCTTACACGTAAATCATAAGTTGATGTCAACGTCCCAGACCT
1 GGTCTTACACGTAAATCATAAGTTGATGCCAACGTACCAGACCT
78323241 GGTCTTACA
1 GGTCTTACA
78323250 TGATAACACA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
42 11 0.24
43 6 0.13
44 28 0.61
45 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (44 bp):
GGTCTTACACGTAAATCATAAGTTGATGCCAACGTACCAGACCT
Found at i:78326142 original size:43 final size:44
Alignment explanation
Indices: 78326088--78326205 Score: 125
Period size: 45 Copynumber: 2.7 Consensus size: 44
78326078 ATATCGTACA
* * * *
78326088 ATGCCAATGTCCCAGACGTGGTCTTACATGCT-ATCTC-ATATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACACG-TAACCACAATATCG
* *
78326131 ATGCCACTGTCCCAGACATAGTCTTACACGTAACCACATATATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACACGTAACCACA-ATATCG
*
78326176 ATGCCAAC-GTCCCAAACGTGGTCTTACACG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACG
78326206 AAAACACATA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
42 1 0.02
43 29 0.47
45 30 0.48
46 2 0.03
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCACTGTCCCAGACGTGGTCTTACACGTAACCACAATATCG
Found at i:78326189 original size:45 final size:45
Alignment explanation
Indices: 78326125--78326217 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 45
78326115 ATGCTATCTC
* * *
78326125 ATATCGATGCCACTGTCCCAGACATAGTCTTACACGTAACCACAT
1 ATATCGATGCCACTGTCCCAAACATAGTCTTACACGAAAACACAT
* *
78326170 ATATCGATGCCAAC-GTCCCAAACGTGGTCTTACACGAAAACACAT
1 ATATCGATGCC-ACTGTCCCAAACATAGTCTTACACGAAAACACAT
78326215 ATA
1 ATA
78326218 GGAAATCCTA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
45 40 0.95
46 2 0.05
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (45 bp):
ATATCGATGCCACTGTCCCAAACATAGTCTTACACGAAAACACAT
Found at i:78327361 original size:14 final size:16
Alignment explanation
Indices: 78327335--78327367 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
78327325 TAAATCACGA
78327335 AAATTTCACACAT-AT
1 AAATTTCACACATAAT
78327350 AAATTT-ACACATAAT
1 AAATTTCACACATAAT
78327365 AAA
1 AAA
78327368 CACATAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (16 bp):
AAATTTCACACATAAT
Found at i:78329431 original size:40 final size:40
Alignment explanation
Indices: 78329379--78329650 Score: 445
Period size: 40 Copynumber: 6.8 Consensus size: 40
78329369 ATAACCACAA
* * * *
78329379 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
78329419 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
78329459 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
78329499 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
78329541 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
78329581 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
78329621 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
78329651 GTATTCAAAT
Statistics
Matches: 217, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
40 178 0.82
42 39 0.18
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:78329575 original size:122 final size:122
Alignment explanation
Indices: 78329379--78329658 Score: 458
Period size: 122 Copynumber: 2.3 Consensus size: 122
78329369 ATAACCACAA
* * * *
78329379 GCACAATTGCCTTCGGGTCTTAACCCGGGTATA-G-CAACTCGCACGAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
* *
78329442 CCCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
78329499 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTTGCACAAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
*
78329564 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
66 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
78329621 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAT-TCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAA
78329659 ATGCTCATGC
Statistics
Matches: 149, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
120 30 0.20
121 5 0.03
122 114 0.77
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (122 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:78337910 original size:47 final size:47
Alignment explanation
Indices: 78337851--78338150 Score: 474
Period size: 47 Copynumber: 6.4 Consensus size: 47
78337841 GATGTACAAG
* * *
78337851 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
78337898 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
78337945 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
78337992 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
78338039 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
78338086 GTGTATATATGTGATAAAGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
78338133 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
78338151 TCCCGAAGGG
Statistics
Matches: 232, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 232 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:78340837 original size:26 final size:27
Alignment explanation
Indices: 78340808--78340893 Score: 104
Period size: 26 Copynumber: 3.3 Consensus size: 27
78340798 TTAGTTTACC
*
78340808 AAATTACTAAAATACCCCCAG-TTGTA
1 AAATTACCAAAATACCCCCAGATTGTA
* * *
78340834 AAATTACCAAAGTACCCCCAGTTTATA
1 AAATTACCAAAATACCCCCAGATTGTA
**
78340861 AAATTACCAAAATACCGTC-GATTGTA
1 AAATTACCAAAATACCCCCAGATTGTA
78340887 AAATTAC
1 AAATTAC
78340894 TGAAATGCCC
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 31 0.61
27 20 0.39
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (27 bp):
AAATTACCAAAATACCCCCAGATTGTA
Found at i:78340899 original size:26 final size:27
Alignment explanation
Indices: 78340808--78340975 Score: 110
Period size: 27 Copynumber: 6.3 Consensus size: 27
78340798 TTAGTTTACC
* * *
78340808 AAATTACTAAAATACCC-CCAGTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
78340834 AAATTACCAAAGTACCC-CCAGTTTATA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
78340861 AAATTACCAAAATACCGTCGA-TTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
** *
78340887 AAATTACTGAAATGCCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** * *
78340914 GAATTACCATTTTAGCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* ** *
78340941 GAATTACC-ATTTCACCCTTGATTTGTA
1 AAATTACCAAAAT-ACCCTCGATTTGTA
78340968 AAATTACC
1 AAATTACC
78340976 GTTTTACCCT
Statistics
Matches: 112, Mismatches: 26, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
26 42 0.38
27 68 0.61
28 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:78340932 original size:27 final size:27
Alignment explanation
Indices: 78340901--78341488 Score: 604
Period size: 27 Copynumber: 21.9 Consensus size: 27
78340891 TACTGAAATG
** *
78340901 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * * *
78340928 GCCTCGATTTATAGAATTACCATTTCA
1 CCCTCGATTTACAGAATTACCGTTTTA
* ** *
78340955 CCCTTGATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
78340982 CCCTCAATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* **
78341009 CCCTC-AGTTTACAAAATTACTATTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
* *
78341036 CCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
** *
78341063 CCCTCGATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
78341090 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
78341117 CCCTC-AGTTTACAGAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
* *
78341144 CCCTTGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
**
78341171 CCCTC-AGTTTACAGAATTACTATTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
*
78341198 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
** * * *
78341225 CCCTCGATTTGTAAAACTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
78341252 CCCTTGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
78341279 CCCTC-AGTTTACAAAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
*
78341306 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* **
78341333 CCCTC-AGTTTATAGAATTACTATTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
* *
78341360 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
78341387 CCCTCGA--TA-A-AATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
78341410 CCCTTGATTTACAGAATTACTAG-TTTA
1 CCCTCGATTTACAGAATTAC-CGTTTTA
* *
78341437 CCCTC-AGTTTACAAAATTATCGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
*
78341464 CCCTCGATTTACAGAATTACTGTTT
1 CCCTCGATTTACAGAATTACCGTTT
78341489 CGCCCTTGAT
Statistics
Matches: 475, Mismatches: 68, Indels: 36
0.82 0.12 0.06
Matches are distributed among these distances:
23 18 0.04
24 1 0.00
25 4 0.01
26 8 0.02
27 437 0.92
28 7 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:78341534 original size:27 final size:27
Alignment explanation
Indices: 78341504--78341697 Score: 221
Period size: 27 Copynumber: 7.2 Consensus size: 27
78341494 TTGATTGTGA
*
78341504 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
78341531 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
78341558 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** *
78341585 AATTACCAAAATACCCCTGAAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
78341612 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
78341639 AAATACCGAAATA-CCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
78341665 AATTACTGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
78341692 AATTAC
1 AATTAC
78341698 CATTTTGCCC
Statistics
Matches: 139, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
26 22 0.16
27 117 0.84
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:78341861 original size:16 final size:16
Alignment explanation
Indices: 78341840--78341870 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
78341830 CAAATATGGG
*
78341840 CATGACATTTTGCATA
1 CATGACATGTTGCATA
78341856 CATGACATGTTGCAT
1 CATGACATGTTGCAT
78341871 GGGTTGGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:78341935 original size:27 final size:26
Alignment explanation
Indices: 78341897--78341952 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 26
78341887 CGGAGGAAGC
78341897 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
78341924 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
78341950 GTT
1 GTT
78341953 GACCGATCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 10 0.36
27 18 0.64
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:78342285 original size:27 final size:27
Alignment explanation
Indices: 78342265--78342336 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
78342255 GGTGGGTTTG
*
78342265 CCACATTATCTG-ATTCTGGTGGCTCTA
1 CCACAATATCTGTA-TCTGGTGGCTCTA
* *
78342292 CCACAATATCTGTATCTGGTGACTCTG
1 CCACAATATCTGTATCTGGTGGCTCTA
* *
78342319 TCACGATATCTGT-TCTGG
1 CCACAATATCTGTATCTGG
78342337 CAGCCATGTT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.13
27 33 0.85
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (27 bp):
CCACAATATCTGTATCTGGTGGCTCTA
Found at i:78342463 original size:6 final size:6
Alignment explanation
Indices: 78342454--78342646 Score: 191
Period size: 6 Copynumber: 31.8 Consensus size: 6
78342444 TTGCATTCAC
* *
78342454 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
78342503 -TTACTA ATACTA ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
78342551 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG
*
78342600 ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
78342647 CATTTTGGTT
Statistics
Matches: 157, Mismatches: 16, Indels: 28
0.78 0.08 0.14
Matches are distributed among these distances:
5 10 0.06
6 135 0.86
7 10 0.06
8 2 0.01
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:78342599 original size:85 final size:85
Alignment explanation
Indices: 78342454--78342641 Score: 301
Period size: 85 Copynumber: 2.2 Consensus size: 85
78342444 TTGCATTCAC
*
78342454 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTAATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTAATAC
78342519 TGATTCTGATTCTG-TTACTG
66 TGATTCTGATTCTGATT-CTG
**
78342539 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGATT-CTGTTACTAATA
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTG-TTACTAATACTAATA
78342603 CTGATTCTGATTCTGATTCTG
65 CTGATTCTGATTCTGATTCTG
78342624 -TTACTGATTCTGATTCTG
1 ATT-CTGATTCTGATTCTG
78342642 ATTCTCATTT
Statistics
Matches: 97, Mismatches: 3, Indels: 6
0.92 0.03 0.06
Matches are distributed among these distances:
84 2 0.02
85 91 0.94
86 4 0.04
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTAATAC
TGATTCTGATTCTGATTCTG
Found at i:78342610 original size:91 final size:85
Alignment explanation
Indices: 78342454--78342646 Score: 323
Period size: 91 Copynumber: 2.2 Consensus size: 85
78342444 TTGCATTCAC
78342454 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTAATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTAATTC
78342519 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
78342539 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGATTCTGTTACTAATAC
1 ATTCTGATTCTGATTCTGTCACCT-A-----ATTCTGATTCTGATTCTGATTCTGTTACTAATAC
*
78342604 TGATTCTGATTCTGATTCTGTTACTG
60 TAATTCTGATTCTGATTCTGTTACTG
78342630 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
78342647 CATTTTGGTT
Statistics
Matches: 101, Mismatches: 1, Indels: 6
0.94 0.01 0.06
Matches are distributed among these distances:
85 24 0.24
86 1 0.01
91 76 0.75
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTAATTC
TGATTCTGATTCTGTTACTG
Found at i:78342667 original size:30 final size:30
Alignment explanation
Indices: 78342454--78342646 Score: 255
Period size: 30 Copynumber: 6.4 Consensus size: 30
78342444 TTGCATTCAC
*
78342454 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
* *
78342485 ATTCTGATTCTGATTCTGTTACTAATACTA
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
78342515 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* * *
78342545 ATTCTGATTCTG-TCACCTAATT-CTGATTCTG
1 ATTCTGATTCTGAT--TCT-GTTACTAATTCTG
*
78342576 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
78342606 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
78342636 ATTCTGATTCT
1 ATTCTGATTCT
78342647 CATTTTGGTT
Statistics
Matches: 143, Mismatches: 14, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
29 3 0.02
30 94 0.66
31 43 0.30
32 3 0.02
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:78344637 original size:25 final size:25
Alignment explanation
Indices: 78344584--78344649 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 25
78344574 TTAGTTTACC
*
78344584 AAATTACTAAATACCCCCAGTTGTA
1 AAATTACCAAATACCCCCAGTTGTA
*
78344609 AAATTACCAAAGTACCCCGA-TT-TA
1 AAATTACCAAA-TACCCCCAGTTGTA
78344633 TAAATTACCAAAATACC
1 -AAATTACC-AAATACC
78344650 GTCGATTGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
24 2 0.06
25 24 0.67
26 10 0.28
ACGTcount: A:0.44, C:0.24, G:0.06, T:0.26
Consensus pattern (25 bp):
AAATTACCAAATACCCCCAGTTGTA
Found at i:78344739 original size:27 final size:27
Alignment explanation
Indices: 78344671--78345254 Score: 636
Period size: 27 Copynumber: 21.9 Consensus size: 27
78344661 TTACTGAAAT
*
78344671 CCTCGATTT-TAGAATTACCATTTTA-
1 CCTCGATTTATAGAATTACCGTTTTAC
78344696 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * *
78344723 CCTCGATTTGTAAAATTACAGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
*
78344750 TCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* *
78344777 CCT-TAGTTTATAGAATTACTGTTTTAC
1 CCTCGA-TTTATAGAATTACCGTTTTAC
*
78344804 CCTCGATTTACAGAA-TACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* *
78344830 CCTC-AGTTTACAGAATTACTGTTTTAC
1 CCTCGA-TTTATAGAATTACCGTTTTAC
78344857 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* **
78344884 CCTCGATTTACAGAATTACTATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * *
78344911 CCTTGATTTACAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
**
78344938 CCTC-AGTTTATAGAATTACTATTTTAC
1 CCTCGA-TTTATAGAATTACCGTTTTAC
*
78344965 CCTCGATTTATAAAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * *
78344992 CCTCGATTTGTAAAACTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * *
78345019 CCTTGATTTACAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * **
78345046 CCTC-AGTTTACAAAATTACTATTTTAC
1 CCTCGA-TTTATAGAATTACCGTTTTAC
*
78345073 CCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
**
78345100 CCTC-AGTTTATAGAATTACTATTTTAC
1 CCTCGA-TTTATAGAATTACCGTTTTAC
*
78345127 CCTCTATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
*
78345154 CCTCGA--TA-A-AATTACTGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * * * *
78345177 CTTTGATTTACAGAATTACTGGTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * *
78345204 CCTC-AGTTTACAAAATTATCGTTTTAC
1 CCTCGA-TTTATAGAATTACCGTTTTAC
*
78345231 CCTCGATTTACAGAATTACCGTTT
1 CCTCGATTTATAGAATTACCGTTT
78345255 CCCTTGATTG
Statistics
Matches: 480, Mismatches: 60, Indels: 36
0.83 0.10 0.06
Matches are distributed among these distances:
23 17 0.04
24 1 0.00
25 14 0.03
26 44 0.09
27 398 0.83
28 6 0.01
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
CCTCGATTTATAGAATTACCGTTTTAC
Found at i:78345309 original size:27 final size:27
Alignment explanation
Indices: 78345275--78345460 Score: 205
Period size: 27 Copynumber: 7.0 Consensus size: 27
78345265 TGAAATTACT
* *
78345275 AAATACCCCTGTAGGGTAGAATTTCTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
78345302 AAATA-CCCTATAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
78345328 AAATACCCTTATAGGATAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
78345355 AAATACCCCTGAAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
78345382 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
78345409 AAATA-CCCTGTAGGGTAAAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
78345435 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
78345461 ATTTTGCCCC
Statistics
Matches: 135, Mismatches: 22, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 46 0.34
27 89 0.66
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:78345362 original size:80 final size:80
Alignment explanation
Indices: 78345267--78345458 Score: 228
Period size: 80 Copynumber: 2.4 Consensus size: 80
78345257 CTTGATTGTG
* * *
78345267 AAATTA-CTAAATACCCCTGTAGGGTAGAATT-TCTGAAATACCC-TATAGGGTAGAATTACTGA
1 AAATTACCAAAATACCCCTGTAGGGTAGAATTATC-GAAATACCCTTATAGGGTAGAAATACCGA
78345329 AATACCCTTATAGGATA
65 AATACCC-TATAGGATA
* * *
78345346 GAATTACCAAAATACCCCTGAAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAA
1 AAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACCGAA
* *
78345411 ATACCCTGTAGGGTA
66 ATACCCTATAGGATA
* * * * *
78345426 AAATTACCGAGATACCCTTGTGGGGTAAAATTA
1 AAATTACCAAAATACCCCTGTAGGGTAGAATTA
78345459 CCATTTTGCC
Statistics
Matches: 95, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 5 0.05
80 65 0.68
81 25 0.26
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACCGAA
ATACCCTATAGGATA
Found at i:78345697 original size:27 final size:26
Alignment explanation
Indices: 78345659--78345714 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 26
78345649 CGGAGGAAGC
78345659 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
78345686 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
78345712 GTT
1 GTT
78345715 GACCGATCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 10 0.36
27 18 0.64
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:78346046 original size:27 final size:27
Alignment explanation
Indices: 78346024--78346097 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
78346014 TAGGTGGGTT
*
78346024 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
78346051 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
78346078 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
78346098 CAGCCATGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:78346223 original size:6 final size:6
Alignment explanation
Indices: 78346214--78346345 Score: 119
Period size: 6 Copynumber: 21.8 Consensus size: 6
78346204 TTGCATTCAC
* *
78346214 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
78346263 -TTACTA ATACTA ATTCTG ATTATG ATTCTG -TTACTA ATACTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
78346311 ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
78346346 CATTTTGGTT
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
5 7 0.07
6 89 0.86
7 6 0.06
8 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:78346366 original size:30 final size:30
Alignment explanation
Indices: 78346214--78346345 Score: 201
Period size: 30 Copynumber: 4.4 Consensus size: 30
78346204 TTGCATTCAC
*
78346214 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
* *
78346245 ATTCTGATTCTGATTCTGTTACTAATACTA
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
78346275 ATTCTGATTATGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
78346305 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
78346335 ATTCTGATTCT
1 ATTCTGATTCT
78346346 CATTTTGGTT
Statistics
Matches: 93, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 73 0.78
31 20 0.22
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:78348334 original size:27 final size:27
Alignment explanation
Indices: 78348290--78348358 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
78348280 TTAGTTTACC
* *
78348290 AAATTACTAAAATACCCCCAG-TTGTA
1 AAATTACCAAAATACCCCCAGTTTATA
* *
78348316 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAAATACCCCCAGTTTATA
78348343 AAATTACCAAAATACC
1 AAATTACCAAAATACC
78348359 ATCGATTGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 18 0.49
27 19 0.51
ACGTcount: A:0.43, C:0.25, G:0.07, T:0.25
Consensus pattern (27 bp):
AAATTACCAAAATACCCCCAGTTTATA
Found at i:78348441 original size:54 final size:54
Alignment explanation
Indices: 78348395--78349189 Score: 952
Period size: 54 Copynumber: 14.7 Consensus size: 54
78348385 CTCGATTTGT
** * * * *
78348395 AGAATTACCATTTTAGCCTCGACTTATAGAATTACCGTTTCACCCTCGATTTGTA-
1 AGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-AGTT-TAC
* * *
78348450 A-AATTACAGTTTTACTCTCGATTTATAGAATTACCGTTTTACCCTTAGTTTAC
1 AGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTAC
78348503 AGAATTACTGTTTTACCCTCGATTTATAGAA-TACCGTTTTACCCTCAGTTTAC
1 AGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTAC
*
78348556 AGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGTA-
1 AGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-AGTT-TAC
**
78348611 A-AATTA-TCGTTTTACCCTAAATTTATAGAATTACCGTTTTACCCTCAGTTTAC
1 AGAATTACT-GTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTAC
* *
78348664 AGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTAC
1 AGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTAC
* *
78348718 AGAATTACTATTTTACCCTCGATTTATAGAATTA-CGATTTTACCCTCGATTTGTA-
1 AGAATTACTGTTTTACCCTCGATTTATAGAATTACCG-TTTTACCCTC-AGTT-TAC
* * * *
78348773 A-AATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTAC
1 AGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTAC
* * * * * *
78348826 AAAATTACTATTTTACCCTAGATTTACAAAATTACCATTTTACCCTCAGTTTAC
1 AGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTAC
* * * **
78348880 AGAATTACTGTTTTACCCTCGATTTATAGAATTATCATTTTACCCTCAATTTGT
1 AGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTAC
* * *
78348934 AAAATTA-TCGTTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCAGTTTAC
1 AGAATTACT-GTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTAC
* *
78348988 AGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTAC
1 AGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTAC
* *
78349042 AGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGTA-
1 AGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-AGTT-TAC
* * * * * *
78349097 A-AATTACCGTTTTACCCTTGATTTACAAAATTACTAG-TTTACCCTCAATTTAC
1 AGAATTACTGTTTTACCCTCGATTTATAGAATTAC-CGTTTTACCCTCAGTTTAC
* * *
78349150 AAAATTA-TCCTTTTACCCTCGATTTACAGAATTACCGTTT
1 AGAATTACT-GTTTTACCCTCGATTTATAGAATTACCGTTT
78349190 CGCCCTTGAT
Statistics
Matches: 648, Mismatches: 68, Indels: 49
0.85 0.09 0.06
Matches are distributed among these distances:
52 8 0.01
53 72 0.11
54 545 0.84
55 17 0.03
56 6 0.01
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (54 bp):
AGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAGTTTAC
Found at i:78349200 original size:27 final size:27
Alignment explanation
Indices: 78348383--78349189 Score: 855
Period size: 27 Copynumber: 29.9 Consensus size: 27
78348373 TAATGAAATG
** *
78348383 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * * *
78348410 GCCTCGACTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAGAATTACCGTTTTA
** * *
78348437 CCCTCGATTTGTAAAATTACAGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
78348464 CTCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
78348491 CCCT-TAGTTTACAGAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
*
78348518 CCCTCGATTTATAGAA-TACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
78348544 CCCTC-AGTTTACAGAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
*
78348571 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
** * *
78348598 CCCTCGATTTGTAAAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
** *
78348625 CCCTAAATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
78348652 CCCTC-AGTTTACAGAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
*
78348679 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
**
78348706 CCCTC-AGTTTACAGAATTACTATTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
*
78348733 CCCTCGATTTATAGAATTA-CGATTTTA
1 CCCTCGATTTACAGAATTACCG-TTTTA
** *
78348760 CCCTCGATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
78348787 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* **
78348814 CCCTC-AGTTTACAAAATTACTATTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
* * *
78348841 CCCTAGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
78348868 CCCTC-AGTTTACAGAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
* * *
78348895 CCCTCGATTTATAGAATTATCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* ** * *
78348922 CCCTCAATTTGTAAAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
78348949 CCCTCAATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
*
78348976 CCCTC-AGTTTACAGAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
*
78349003 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
**
78349030 CCCTC-AGTTTACAGAATTACTATTTTA
1 CCCTCGA-TTTACAGAATTACCGTTTTA
*
78349057 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
** *
78349084 CCCTCGATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
78349111 CCCTTGATTTACAAAATTACTAG-TTTA
1 CCCTCGATTTACAGAATTAC-CGTTTTA
* *
78349138 CCCTCAATTTACAAAATTATCC-TTTTA
1 CCCTCGATTTACAGAATTA-CCGTTTTA
78349165 CCCTCGATTTACAGAATTACCGTTT
1 CCCTCGATTTACAGAATTACCGTTT
78349190 CGCCCTTGAT
Statistics
Matches: 672, Mismatches: 85, Indels: 46
0.84 0.11 0.06
Matches are distributed among these distances:
25 1 0.00
26 31 0.05
27 628 0.93
28 12 0.02
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:78349235 original size:27 final size:27
Alignment explanation
Indices: 78349205--78349399 Score: 169
Period size: 27 Copynumber: 7.2 Consensus size: 27
78349195 TTGATTGTGA
*
78349205 AATTACTAAAATACCCCTGCAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
* * *
78349232 AATT-TTCGAAATACCCCTATAGGGTAG
1 AATTACT-AAAATACCCCTGTAGGGTAG
* * *
78349259 AATTACTAAAATACCCTTATAGGATAG
1 AATTACTAAAATACCCCTGTAGGGTAG
*
78349286 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
* * * *
78349313 AATTA-TCGAAATATCCTTGTAAGGTAG
1 AATTACT-AAAATACCCCTGTAGGGTAG
* **
78349340 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
** * * * *
78349367 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTAAAATACCCCTGTAGGGTAG
78349394 AATTAC
1 AATTAC
78349400 CATTTTGCCC
Statistics
Matches: 137, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
26 1 0.01
27 135 0.99
28 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACTAAAATACCCCTGTAGGGTAG
Found at i:78349269 original size:54 final size:54
Alignment explanation
Indices: 78349205--78349400 Score: 223
Period size: 54 Copynumber: 3.6 Consensus size: 54
78349195 TTGATTGTGA
* * ** *
78349205 AATTACTAAAATACCCCTGCAGGGTAGAATTTTCGAAATACCCCTATAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
78349259 AATTACTAAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
78349313 AATTA-TCGAAATATCCTTGTAAGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-AAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
** * * *
78349367 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACC
78349401 ATTTTGCCCC
Statistics
Matches: 118, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 117 0.99
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:78349392 original size:81 final size:81
Alignment explanation
Indices: 78349205--78349398 Score: 226
Period size: 81 Copynumber: 2.4 Consensus size: 81
78349195 TTGATTGTGA
* * * * * *
78349205 AATTACTAAAATACCCCTGCAGGGTAGAATTTTCGAAATACCCCTATAGGGTAGAATTACTAAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAAGGTAGAAATACCAAAA
*
78349270 TACCCTTATAGGATAG
66 TACCCCTATAGGATAG
* * * *
78349286 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATATCCTTGTAAGGTAGAAATACCGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAAGGTAGAAATACCAAAA
* *
78349351 TACCCCTGTAGGGTAG
66 TACCCCTATAGGATAG
* * * * *
78349367 AATTACCGAGATACCCTTGTGGGGTAAAATTA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTA
78349399 CCATTTTGCC
Statistics
Matches: 95, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 95 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAAGGTAGAAATACCAAAA
TACCCCTATAGGATAG
Found at i:78349642 original size:27 final size:27
Alignment explanation
Indices: 78349600--78349678 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
78349590 GGAGGAAGCG
*
78349600 TTCTGGTGGCTATGCCACAAATATCTA
1 TTCTGGTGGCTCTGCCACAAATATCTA
* *
78349627 TTCTGGTGGCTCTGCCACAATATTTGTA
1 TTCTGGTGGCTCTGCCACAA-ATATCTA
*
78349655 TT-TGGTGACTCTGCCAC-AATATCT
1 TTCTGGTGGCTCTGCCACAAATATCT
78349679 GTTGACCGAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
25 4 0.09
26 1 0.02
27 33 0.73
28 7 0.16
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.37
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAAATATCTA
Found at i:78350219 original size:6 final size:6
Alignment explanation
Indices: 78350208--78350363 Score: 153
Period size: 6 Copynumber: 25.8 Consensus size: 6
78350198 CTGTCACCTA
* *
78350208 ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG
* *
78350256 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
78350305 -TTACT- AGTACTG ATTCTA ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG A-TTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
78350353 ATTCTG ATTCT
1 ATTCTG ATTCT
78350364 CATTTTGGTT
Statistics
Matches: 125, Mismatches: 12, Indels: 26
0.77 0.07 0.16
Matches are distributed among these distances:
5 9 0.07
6 106 0.85
7 9 0.07
8 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:78350243 original size:30 final size:30
Alignment explanation
Indices: 78350208--78350363 Score: 207
Period size: 30 Copynumber: 5.4 Consensus size: 30
78350198 CTGTCACCTA
78350208 ATTCTGATTCTGTTACTAATACTGATTCTG
1 ATTCTGATTCTGTTACTAATACTGATTCTG
78350238 ATTCTGATTCTG----T--TACTGATTCTG
1 ATTCTGATTCTGTTACTAATACTGATTCTG
* *
78350262 ATTCTGATTCTGTCACCTAATTCTGATTCTG
1 ATTCTGATTCTGTTA-CTAATACTGATTCTG
* *
78350293 ATTCTGATTCTGTTACTAGTACTGATTCTA
1 ATTCTGATTCTGTTACTAATACTGATTCTG
* *
78350323 ATTCTGATTCTGTTACTGATTCTGATTCTG
1 ATTCTGATTCTGTTACTAATACTGATTCTG
78350353 ATTCTGATTCT
1 ATTCTGATTCT
78350364 CATTTTGGTT
Statistics
Matches: 110, Mismatches: 9, Indels: 14
0.83 0.07 0.11
Matches are distributed among these distances:
24 23 0.21
26 1 0.01
29 1 0.01
30 61 0.55
31 24 0.22
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGTTACTAATACTGATTCTG
Found at i:78350318 original size:73 final size:73
Alignment explanation
Indices: 78350183--78350346 Score: 203
Period size: 73 Copynumber: 2.2 Consensus size: 73
78350173 TTGCATTCAC
* *
78350183 ATTCTGATTTTGATTCTGTCACCTAATTCTGATTCTGTTACTAATACTGATTCTGATTCTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGTTACTAATACTGATTCTGATACTGATTC
*
78350248 T-GTTACTG
66 TAATT-CTG
* *
78350256 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATT-CTGATTCTG-TTACT-AGTACTGA
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTG-TTACTAATACTGATT-CTGA-TACTGA
78350318 TTCTAATTCTG
63 TTCTAATTCTG
78350329 ATTCTG-TTACTGATTCTG
1 ATTCTGATT-CTGATTCTG
78350347 ATTCTGATTC
Statistics
Matches: 81, Mismatches: 5, Indels: 10
0.84 0.05 0.10
Matches are distributed among these distances:
72 5 0.06
73 72 0.89
74 4 0.05
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (73 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGTTACTAATACTGATTCTGATACTGATTC
TAATTCTG
Found at i:78355433 original size:27 final size:27
Alignment explanation
Indices: 78355342--78355580 Score: 268
Period size: 27 Copynumber: 8.9 Consensus size: 27
78355332 CTTATGAGAC
78355342 AAAATGACTATTTTGCCCTTATGTGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
* * *
78355369 -AAATGACTGTTTTACCCTTATATGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
* *
78355395 -AAATGACTATTTTACCCTTATGTGAT
1 AAAATGACTATTTTGCCCTTATGTGGT
*
78355421 AAAATGACTATTTTGCCCTTATGAGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
* *
78355448 AAAATGATTATTTTGTCCTTATAG-GGT
1 AAAATGACTATTTTGCCCTTAT-GTGGT
* *
78355475 AAAATGACTATTTTTCCCTTATGAGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
*
78355502 AAAATGACTATTTTGCCCTTATGAGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
* * * *
78355529 GAAATGACTTTTTTGCCCTTTTATGGT
1 AAAATGACTATTTTGCCCTTATGTGGT
* * * * *
78355556 AAGATGATTGTTTTACCCCTATGTG
1 AAAATGACTATTTTGCCCTTATGTG
78355581 ATGTATGTTT
Statistics
Matches: 181, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
26 47 0.26
27 133 0.73
28 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.41
Consensus pattern (27 bp):
AAAATGACTATTTTGCCCTTATGTGGT
Found at i:78355508 original size:81 final size:79
Alignment explanation
Indices: 78355329--78355578 Score: 322
Period size: 81 Copynumber: 3.1 Consensus size: 79
78355319 GCGTACCTAA
* * * *
78355329 ACCCTTATGAGACAAAATGACTATTTTGCCCTTATGTGGTAAATGACTGTTTTACCCTTATATGG
1 ACCCTTATGAGATAAAATGACTATTTTGCCCTTATGAGGTAAATGA-TTTTTTGCCCTTATATGG
78355394 T-AAATGACTATTTT
65 TAAAATGACTATTTT
* * *
78355408 ACCCTTATGTGATAAAATGACTATTTTGCCCTTATGAGGTAAAATGATTATTTTGTCCTTATAGG
1 ACCCTTATGAGATAAAATGACTATTTTGCCCTTATGAGGT-AAATGATT-TTTTGCCCTTATATG
78355473 GTAAAATGACTATTTT
64 GTAAAATGACTATTTT
* * *
78355489 TCCCTTATGAGGTAAAATGACTATTTTGCCCTTATGAGGTGAAATGACTTTTTTGCCCTTTTATG
1 ACCCTTATGAGATAAAATGACTATTTTGCCCTTATGAGGT-AAATGA-TTTTTTGCCCTTATATG
* * *
78355554 GTAAGATGATTGTTTT
64 GTAAAATGACTATTTT
*
78355570 ACCCCTATG
1 ACCCTTATG
78355579 TGATGTATGT
Statistics
Matches: 148, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
79 38 0.26
80 20 0.14
81 88 0.59
82 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (79 bp):
ACCCTTATGAGATAAAATGACTATTTTGCCCTTATGAGGTAAATGATTTTTTGCCCTTATATGGT
AAAATGACTATTTT
Found at i:78355936 original size:18 final size:17
Alignment explanation
Indices: 78355908--78355944 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 17
78355898 ATAGTTATTA
78355908 CACTGTTACTATTACTG
1 CACTGTTACTATTACTG
78355925 CACTGTTTACTATTACTG
1 CACTG-TTACTATTACTG
78355943 CA
1 CA
78355945 ATGGGCCAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.41
Consensus pattern (17 bp):
CACTGTTACTATTACTG
Found at i:78357049 original size:15 final size:15
Alignment explanation
Indices: 78357026--78357056 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
78357016 TCAAAAATTC
78357026 CAATACAAAACATAT
1 CAATACAAAACATAT
*
78357041 CAATCCAAAACATAT
1 CAATACAAAACATAT
78357056 C
1 C
78357057 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:78358478 original size:6 final size:6
Alignment explanation
Indices: 78358464--78358549 Score: 61
Period size: 6 Copynumber: 14.5 Consensus size: 6
78358454 GTTTGACAAT
* * * *
78358464 AGAAGA AGAATA AGAAG- AGAGGA AGAAAA AGAAGA AGAATA AGAAGA
1 AGAAGA AGAAGA AGAAGA AGAAGA AGAAGA AGAAGA AGAAGA AGAAGA
* * * *
78358511 AGGAGA ATAA-A GAGAATG- AGAAGA AGGAGA ATAAGA AGA
1 AGAAGA AGAAGA -AGAA-GA AGAAGA AGAAGA AGAAGA AGA
78358550 GGATGGGAAG
Statistics
Matches: 59, Mismatches: 16, Indels: 10
0.69 0.19 0.12
Matches are distributed among these distances:
5 6 0.10
6 53 0.90
ACGTcount: A:0.63, C:0.00, G:0.31, T:0.06
Consensus pattern (6 bp):
AGAAGA
Found at i:78358526 original size:15 final size:15
Alignment explanation
Indices: 78358464--78358549 Score: 64
Period size: 15 Copynumber: 6.2 Consensus size: 15
78358454 GTTTGACAAT
*
78358464 AGAAGAAGAATAAGA
1 AGAAGGAGAATAAGA
78358479 AGAGAGGA-AGA-AA-A
1 AGA-AGGAGA-ATAAGA
*
78358493 AGAAGAAGAATAAGA
1 AGAAGGAGAATAAGA
78358508 AGAAGGAGAAT----
1 AGAAGGAGAATAAGA
*
78358519 A-AA-GAGAATGAGA
1 AGAAGGAGAATAAGA
78358532 AGAAGGAGAATAAGA
1 AGAAGGAGAATAAGA
78358547 AGA
1 AGA
78358550 GGATGGGAAG
Statistics
Matches: 56, Mismatches: 4, Indels: 22
0.68 0.05 0.27
Matches are distributed among these distances:
9 6 0.11
10 2 0.04
11 1 0.02
13 5 0.09
14 9 0.16
15 29 0.52
16 4 0.07
ACGTcount: A:0.63, C:0.00, G:0.31, T:0.06
Consensus pattern (15 bp):
AGAAGGAGAATAAGA
Found at i:78358536 original size:24 final size:26
Alignment explanation
Indices: 78358464--78358562 Score: 103
Period size: 24 Copynumber: 3.7 Consensus size: 26
78358454 GTTTGACAAT
* *
78358464 AGAAGAAGAATAAGAAGAGAGGAAGAAAA
1 AGAAG-AGAATGAGAAGA-AGG-AGAATA
*
78358493 AGAAGAAGAATAAGAAGAAGGAGAAT-
1 AGAAG-AGAATGAGAAGAAGGAGAATA
78358519 A-AAGAGAATGAGAAGAAGGAGAATA
1 AGAAGAGAATGAGAAGAAGGAGAATA
* *
78358544 AGAAGAGGATGGGAAGAAG
1 AGAAGAGAATGAGAAGAAG
78358563 AAATGGAGAT
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
24 19 0.30
25 4 0.06
26 16 0.25
27 4 0.06
28 3 0.05
29 18 0.28
ACGTcount: A:0.60, C:0.00, G:0.34, T:0.06
Consensus pattern (26 bp):
AGAAGAGAATGAGAAGAAGGAGAATA
Found at i:78360998 original size:43 final size:42
Alignment explanation
Indices: 78360907--78361008 Score: 105
Period size: 43 Copynumber: 2.4 Consensus size: 42
78360897 TTATCGAGAT
* * *
78360907 TTGATTACATGTAAGACCATGTCTAGGATATTCGCATTGTAT
1 TTGATTACATGTAAGACCATGTCTAGGACATTCGCATCGTAA
** * * *
78360949 TGTGATTATGTGTAATACCATGTCTGGGACATTGGCATCGTTAA
1 T-TGATTACATGTAAGACCATGTCTAGGACATTCGCATCG-TAA
*
78360993 TTGATTTCATGTAAGA
1 TTGATTACATGTAAGA
78361009 TCCTATCCGA
Statistics
Matches: 46, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
42 1 0.02
43 42 0.91
44 3 0.07
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (42 bp):
TTGATTACATGTAAGACCATGTCTAGGACATTCGCATCGTAA
Found at i:78372079 original size:47 final size:47
Alignment explanation
Indices: 78372010--78372135 Score: 180
Period size: 47 Copynumber: 2.7 Consensus size: 47
78372000 GTGCAAATGG
* *
78372010 TACCTTGATTTGGCTACAGGCCATGGTATAGGTATTCAAAGAGGAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCAAAGAGAAGT
* * *** *
78372057 TACCTTAATTTGGCTACGGGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCAAAGAGAAGT
78372104 TACCTTGATTTGGCTACAGGCCATGGTATAGG
1 TACCTTGATTTGGCTACAGGCCATGGTATAGG
78372136 CACTTATTGA
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (47 bp):
TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCAAAGAGAAGT
Found at i:78383632 original size:57 final size:58
Alignment explanation
Indices: 78383491--78383637 Score: 183
Period size: 57 Copynumber: 2.6 Consensus size: 58
78383481 ATCGAACTCA
* * *
78383491 TTATAGAAAGAATTTAGCCTGGACTGGTAATCCTAATATAATACCTCTCGAGTATACG
1 TTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATACCTCTCGAGCATACG
* * * * *
78383549 TTATGAT-TAGGGTTTAGCCTGGACTGGTAATCCTAAT-TGAT-CTCTTTTGAGCATACG
1 TTAT-ATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATAC-CTCTCGAGCATACG
78383606 TTATATAAAGGATTTAGCCTGGACTGGTAATC
1 TTATATAAAGGATTTAGCCTGGACTGGTAATC
78383638 TTGTTATACT
Statistics
Matches: 76, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
56 3 0.04
57 41 0.54
58 31 0.41
59 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (58 bp):
TTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATACCTCTCGAGCATACG
Found at i:78386104 original size:45 final size:44
Alignment explanation
Indices: 78386009--78386156 Score: 147
Period size: 45 Copynumber: 3.4 Consensus size: 44
78385999 ATTCGGGAAA
* * * * *
78386009 CTCGCACACTTAGTGCCAAATA-A-ATAGCAGAAGCTGTATCAAT
1 CTCGCACACTAAGTG-CAAATATATATAGCTGAAGCTATCTCGAT
* *
78386052 CTCGCACACTAAGTGCATATATATATAAGCTGAAGTTATCTCGAT
1 CTCGCACACTAAGTGCAAATATATAT-AGCTGAAGCTATCTCGAT
* ** *
78386097 CTCGCACACTAAATGCAAATATATATATTTGAAGCTATCTTGAT
1 CTCGCACACTAAGTGCAAATATATATAGCTGAAGCTATCTCGAT
* *
78386141 TTCGTACACTAAGTGC
1 CTCGCACACTAAGTGC
78386157 CCCAAATTAG
Statistics
Matches: 86, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
42 5 0.06
43 15 0.17
44 29 0.34
45 37 0.43
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (44 bp):
CTCGCACACTAAGTGCAAATATATATAGCTGAAGCTATCTCGAT
Found at i:78400228 original size:49 final size:49
Alignment explanation
Indices: 78400172--78400270 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
78400162 GAAATCAATA
78400172 ACCTAATCACACAGAAATCCTCATCAAGCATGTTAGTTATATAGTTCAT
1 ACCTAATCACACAGAAATCCTCATCAAGCATGTTAGTTATATAGTTCAT
*
78400221 ACCTAATCACACATAAATCCTCATCAAGCATGTTAGTTATATAGTTCAT
1 ACCTAATCACACAGAAATCCTCATCAAGCATGTTAGTTATATAGTTCAT
78400270 A
1 A
78400271 TAAATACTGA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.31
Consensus pattern (49 bp):
ACCTAATCACACAGAAATCCTCATCAAGCATGTTAGTTATATAGTTCAT
Found at i:78400684 original size:23 final size:24
Alignment explanation
Indices: 78400649--78400707 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 24
78400639 GGGATCTCAG
* *
78400649 GAGAGCCATATATCGGGAAGTTCA-A
1 GAGAGCC--ATATCAGGAAGCTCACA
78400674 GAGAGCCATATCAGGAAGCTCACA
1 GAGAGCCATATCAGGAAGCTCACA
*
78400698 AAGAGCCATA
1 GAGAGCCATA
78400708 ATCGAAAAGC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
23 13 0.43
24 10 0.33
25 7 0.23
ACGTcount: A:0.39, C:0.20, G:0.25, T:0.15
Consensus pattern (24 bp):
GAGAGCCATATCAGGAAGCTCACA
Found at i:78400707 original size:24 final size:23
Alignment explanation
Indices: 78400617--78400707 Score: 65
Period size: 25 Copynumber: 3.7 Consensus size: 23
78400607 TATAATGGGT
* *
78400617 AGCTCTAAAGAGCCAGTAATCAGGG
1 AGCTCAAAAGAGCCA-T-ATCAGGA
* ** *
78400642 ATCTCAGGAGAGCCATATATCGGGA
1 AGCTCAAAAGAGCC--ATATCAGGA
* *
78400667 AGTTCAAGAGAGCCATATCAGGA
1 AGCTCAAAAGAGCCATATCAGGA
78400690 AGCTCACAAAGAGCCATA
1 AGCTCA-AAAGAGCCATA
78400708 ATCGAAAAGC
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
23 13 0.25
24 10 0.20
25 26 0.51
26 1 0.02
27 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.16
Consensus pattern (23 bp):
AGCTCAAAAGAGCCATATCAGGA
Found at i:78410053 original size:106 final size:106
Alignment explanation
Indices: 78409868--78410079 Score: 397
Period size: 106 Copynumber: 2.0 Consensus size: 106
78409858 GTGGTCCCCA
**
78409868 AACCACTATTTGACTAGGCCCTATTTTGGGATGTTACAGTAGTGGCAAGGTGGCGTGTAAGGGAA
1 AACCACTATTCAACTAGGCCCTATTTTGGGATGTTACAGTAGTGGCAAGGTGGCGTGTAAGGGAA
78409933 CCTTAAGGTCTGAGGTTCGAGTGTGGCACAACACAAACGAG
66 CCTTAAGGTCTGAGGTTCGAGTGTGGCACAACACAAACGAG
78409974 AACCACTATTCAACTAGGCCCTATTTTGGGATGTTACAGTAGTGGCAAGGTGGCGTGTAAGGGAA
1 AACCACTATTCAACTAGGCCCTATTTTGGGATGTTACAGTAGTGGCAAGGTGGCGTGTAAGGGAA
*
78410039 CCTTAAGGTCTGAGGTTTGAGTGTGGCACAACACAAACGAG
66 CCTTAAGGTCTGAGGTTCGAGTGTGGCACAACACAAACGAG
78410080 GTATTTATTT
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 103 1.00
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (106 bp):
AACCACTATTCAACTAGGCCCTATTTTGGGATGTTACAGTAGTGGCAAGGTGGCGTGTAAGGGAA
CCTTAAGGTCTGAGGTTCGAGTGTGGCACAACACAAACGAG
Found at i:78411902 original size:27 final size:27
Alignment explanation
Indices: 78411828--78411941 Score: 81
Period size: 27 Copynumber: 4.2 Consensus size: 27
78411818 GGTCGTTAAG
* * *
78411828 ACCCTTGATTTATGAAATTACCAAAAT
1 ACCCCTGATTTGTGAAATTACCGAAAT
* * *
78411855 ACCCC-CAGGTTGT-AAGCTTACCGAAAT
1 ACCCCTGA-TTTGTGAA-ATTACCGAAAT
*
78411882 ACCCCTGATTTGTGAAATTACTGAAAT
1 ACCCCTGATTTGTGAAATTACCGAAAT
* ** *
78411909 AGCCCC-GGTTTGCAAAATTATCGAAAT
1 A-CCCCTGATTTGTGAAATTACCGAAAT
78411936 ACCCCT
1 ACCCCT
78411942 ATAGGGTAGG
Statistics
Matches: 66, Mismatches: 15, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
26 7 0.11
27 52 0.79
28 7 0.11
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (27 bp):
ACCCCTGATTTGTGAAATTACCGAAAT
Found at i:78411909 original size:54 final size:54
Alignment explanation
Indices: 78411828--78411941 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 54
78411818 GGTCGTTAAG
* * **
78411828 ACCCTTGATTTATGAAATTACCAAAATACCCCCAGG-TTGTAAGCTTACCGAAAT
1 ACCCCTGATTTATGAAATTACCAAAATACCCCC-GGTTTGCAAAATTACCGAAAT
* ** * *
78411882 ACCCCTGATTTGTGAAATTACTGAAATAGCCCCGGTTTGCAAAATTATCGAAAT
1 ACCCCTGATTTATGAAATTACCAAAATACCCCCGGTTTGCAAAATTACCGAAAT
78411936 ACCCCT
1 ACCCCT
78411942 ATAGGGTAGG
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 2 0.04
54 48 0.96
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (54 bp):
ACCCCTGATTTATGAAATTACCAAAATACCCCCGGTTTGCAAAATTACCGAAAT
Found at i:78411992 original size:27 final size:27
Alignment explanation
Indices: 78411930--78412010 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
78411920 GCAAAATTAT
** *
78411930 CGAAATACCCCTATAGGGTAGGATTAC
1 CGAAATACCCCTATAGGGTAAAATGAC
78411957 C-ATAATACCCCTATAGGGTAAAATGAC
1 CGA-AATACCCCTATAGGGTAAAATGAC
* * *
78411984 CGAAGTACCCCTGTATGGTAAAATGAC
1 CGAAATACCCCTATAGGGTAAAATGAC
78412011 GATTATGCCC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.02
27 44 0.96
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (27 bp):
CGAAATACCCCTATAGGGTAAAATGAC
Found at i:78412191 original size:27 final size:26
Alignment explanation
Indices: 78412147--78412238 Score: 105
Period size: 27 Copynumber: 3.5 Consensus size: 26
78412137 ATGGAGGAAG
* *
78412147 TACTG-TACTGGTGACTATGTCACAT
1 TACTGTTACTGGTGGCTATGCCACAT
78412172 TCACTGTTACTGGTGGCTATGCCACAAT
1 T-ACTGTTACTGGTGGCTATGCCAC-AT
* *
78412200 TACTGATACTGGTGGCTTTGCCACATT
1 TACTGTTACTGGTGGCTATGCCACA-T
*
78412227 TACTGTTTCTGG
1 TACTGTTACTGG
78412239 CAACTTTGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
25 1 0.02
26 5 0.09
27 48 0.84
28 3 0.05
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
TACTGTTACTGGTGGCTATGCCACAT
Found at i:78413230 original size:48 final size:48
Alignment explanation
Indices: 78413049--78413235 Score: 221
Period size: 48 Copynumber: 3.9 Consensus size: 48
78413039 ATGAGATTCA
* * * * *
78413049 TGTAAGACCATGTCTGGGACATGGCATTGACATTTGAGATGTGTGCCTG
1 TGTAAGACCATGTCTAGGACATGGCATCGACA-ATGATATGTGTGCCAG
* * *** *
78413098 TGTAAGACCATGTCTGGGACATGTCATCGGTGATGATATATGTGCCAG
1 TGTAAGACCATGTCTAGGACATGGCATCGACAATGATATGTGTGCCAG
*
78413146 TGTAAGACCATGTCTAGGACATGGCATCGACGATGATATGTGTGCCAG
1 TGTAAGACCATGTCTAGGACATGGCATCGACAATGATATGTGTGCCAG
* * * *
78413194 TGTAAGACCATGTCTATGACATGTCATTGGCAATGATATGTG
1 TGTAAGACCATGTCTAGGACATGGCATCGACAATGATATGTG
78413236 GATTCATGTA
Statistics
Matches: 119, Mismatches: 19, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
48 92 0.77
49 27 0.23
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (48 bp):
TGTAAGACCATGTCTAGGACATGGCATCGACAATGATATGTGTGCCAG
Found at i:78413246 original size:48 final size:46
Alignment explanation
Indices: 78413045--78413268 Score: 169
Period size: 48 Copynumber: 4.7 Consensus size: 46
78413035 CTAAATGAGA
* * * *
78413045 TTCATGTAAGACCATGTCTGGGACATGGCATTGACATTTGAGATGTG
1 TTCATGTAAGACCATGTCTAGGACATGGCATCGACA-ATGATATGTG
* * * * *** *
78413092 TGCCTGTGTAAGACCATGTCTGGGACATGTCATCGGTGATGATATATG
1 T-TC-ATGTAAGACCATGTCTAGGACATGGCATCGACAATGATATGTG
* *
78413140 TGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACGATGATATGTG
1 T-TCA-TGTAAGACCATGTCTAGGACATGGCATCGACAATGATATGTG
* * * * *
78413188 TGCCAGTGTAAGACCATGTCTATGACATGTCATTGGCAATGATATGTGG
1 T-TCA-TGTAAGACCATGTCTAGGACATGGCATCGACAATGATATGT-G
* **
78413237 ATTCATGTAAGATCATGTCGGGGACATGGCAT
1 -TTCATGTAAGACCATGTCTAGGACATGGCAT
78413269 TAGTACTTTA
Statistics
Matches: 145, Mismatches: 27, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
47 1 0.01
48 113 0.78
49 30 0.21
50 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (46 bp):
TTCATGTAAGACCATGTCTAGGACATGGCATCGACAATGATATGTG
Found at i:78413246 original size:96 final size:95
Alignment explanation
Indices: 78413043--78413268 Score: 276
Period size: 96 Copynumber: 2.3 Consensus size: 95
78413033 TGCTAAATGA
* *
78413043 GATTCATGTAAGACCATGTCTGGGACATGGCATTGACATTTGAGATGTGTGCCTGTGTAAGACCA
1 GATTCATGTAAGACCATGTCTGGGACATGGCATCGACA-TTGAGATGTGTGCCAGTGTAAGACCA
* **
78413108 TGTCTGGGACATGTCATCGGTGATGATATAT
65 TGTCTAGGACATGTCATCGGCAATGATATAT
* * *
78413139 G-TGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACGA-TGATATGTGTGCCAGTGTAAGAC
1 GAT-TCA-TGTAAGACCATGTCTGGGACATGGCATCGAC-ATTGAGATGTGTGCCAGTGTAAGAC
* * *
78413202 CATGTCTATGACATGTCATTGGCAATGATATGT
63 CATGTCTAGGACATGTCATCGGCAATGATATAT
* *
78413235 GGATTCATGTAAGATCATGTCGGGGACATGGCAT
1 -GATTCATGTAAGACCATGTCTGGGACATGGCAT
78413269 TAGTACTTTA
Statistics
Matches: 110, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
95 1 0.01
96 75 0.68
97 32 0.29
98 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (95 bp):
GATTCATGTAAGACCATGTCTGGGACATGGCATCGACATTGAGATGTGTGCCAGTGTAAGACCAT
GTCTAGGACATGTCATCGGCAATGATATAT
Found at i:78417011 original size:15 final size:15
Alignment explanation
Indices: 78416973--78417005 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
78416963 TGGTTTATCA
78416973 TGGATTTCTTTGTCT
1 TGGATTTCTTTGTCT
78416988 TGGATTTCTTTGTCT
1 TGGATTTCTTTGTCT
78417003 TGG
1 TGG
78417006 TCTTCTCTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.06, C:0.12, G:0.24, T:0.58
Consensus pattern (15 bp):
TGGATTTCTTTGTCT
Found at i:78418979 original size:9 final size:9
Alignment explanation
Indices: 78418965--78418997 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
78418955 GAATTATTCA
78418965 AATCGAGTT
1 AATCGAGTT
78418974 AATCGAGTT
1 AATCGAGTT
*
78418983 AATCGAATT
1 AATCGAGTT
78418992 AATCGA
1 AATCGA
78418998 ATCAACTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (9 bp):
AATCGAGTT
Found at i:78420168 original size:216 final size:205
Alignment explanation
Indices: 78419792--78420185 Score: 574
Period size: 216 Copynumber: 1.9 Consensus size: 205
78419782 TGAAGCACAA
*
78419792 GAAGAAAGTTAAACTATTCTATAATGGTTTTTGAACTGATGTGTTATTGTTATTAGTTTGGTTTG
1 GAAGAAAGTTAAACTATTCTATAATGGTTTTTGAACTGATGTATTATTGTTATTAGTTTGGTTTG
* *
78419857 GTTTGTTGTCGTTGTTTGAGCTTTTGTTGTGTTCTTTTTTTTTTTTGGACTGGTGTAGGTTTCTA
66 GTTTGTTGTCGTTGTTTGAACTTTTATTGTGTTC-TTTTTTTTTTTGGACTGGTGTAGGTTTCTA
78419922 TTGTATTTTGGACTTTTGCTTATCTTTTTTTTATTACAATGTTGTTGTATTGTTTTTATTGTTTA
130 TTGTATTTTGGACTTTTGCTTATCTTTTTTTTATTACAATGTTGTTGTATTGTTTTTATTGTTTA
78419987 TTTGGACTAAT
195 TTTGGACTAAT
* *
78419998 GAAGAAAGTTAAGCTATTCTATAATGGTTTTTGAGCTGATGTATTATTGTTATTAGTTTGGTTTG
1 GAAGAAAGTTAAACTATTCTATAATGGTTTTTGAACTGATGTATTATTGTTATTA-----GTTTG
* *
78420063 GTTTGGTTTGTTATTGTTGTTGGTTAATTGAACTTTTATTGTGTTC-TTTTTTTTTTGGAGTGGT
61 GTTTGGTTTG---TTGTCGTT-G-T--TTGAACTTTTATTGTGTTCTTTTTTTTTTTGGACTGGT
* * *
78420127 GTAGGTTTCTATTGTATTTTGGAGTTTTGCTTATGTTTTTTTTATTATAATGTTGTTGT
119 GTAGGTTTCTATTGTATTTTGGACTTTTGCTTATCTTTTTTTTATTACAATGTTGTTGT
78420186 TTACTTCGAC
Statistics
Matches: 166, Mismatches: 10, Indels: 14
0.87 0.05 0.07
Matches are distributed among these distances:
206 52 0.31
211 15 0.09
214 7 0.04
215 1 0.01
216 74 0.45
218 17 0.10
ACGTcount: A:0.17, C:0.05, G:0.22, T:0.56
Consensus pattern (205 bp):
GAAGAAAGTTAAACTATTCTATAATGGTTTTTGAACTGATGTATTATTGTTATTAGTTTGGTTTG
GTTTGTTGTCGTTGTTTGAACTTTTATTGTGTTCTTTTTTTTTTTGGACTGGTGTAGGTTTCTAT
TGTATTTTGGACTTTTGCTTATCTTTTTTTTATTACAATGTTGTTGTATTGTTTTTATTGTTTAT
TTGGACTAAT
Found at i:78420566 original size:5 final size:5
Alignment explanation
Indices: 78420556--78420582 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
78420546 CTCAAAAATT
78420556 TTCGA TTCGA TTCGA TTCGA TTCGA TT
1 TTCGA TTCGA TTCGA TTCGA TTCGA TT
78420583 GAATGCTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (5 bp):
TTCGA
Found at i:78420989 original size:36 final size:36
Alignment explanation
Indices: 78420942--78421014 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
78420932 AATTCGAATA
*
78420942 ATGTGAATAATAAATAAGCTACATTTGAAATGTTAG
1 ATGTGAATAATAAATAAGCTACACTTGAAATGTTAG
78420978 ATGTGAATAATAAATAAGCTACACTTGAAATGTTAG
1 ATGTGAATAATAAATAAGCTACACTTGAAATGTTAG
78421014 A
1 A
78421015 CAAAGAAAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.45, C:0.07, G:0.16, T:0.32
Consensus pattern (36 bp):
ATGTGAATAATAAATAAGCTACACTTGAAATGTTAG
Found at i:78421481 original size:48 final size:48
Alignment explanation
Indices: 78421371--78421685 Score: 346
Period size: 48 Copynumber: 6.5 Consensus size: 48
78421361 AAATGAGATT
* * * *
78421371 CTGTGTAAGACCATGTCTGGGACATGGCATCGACAT-CTGAGATGTGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCG--GTGATGATATATGTGC
* **
78421420 CTGTGTAGGACCATGTCTGGGACATGTTATCGGTGATGATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGC
**
78421468 CTGTGTAAGACCATGTCTGGGACATGTTATCGGTGATGATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGC
* * *
78421516 CTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATCATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGC
* * ** *
78421564 CAGTGTAAGACCATGTCTTGGACATGGCATCGGCAATGATATGTGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGC
* * * ** * *
78421612 CAGTGTAAGACCATGTCTAGGACATGGCATAGACGATGATATGTG-GA
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGC
* * *
78421659 TTCATGTAAGACCATGTCGGGGACATG
1 CT-GTGTAAGACCATGTCTGGGACATG
78421686 TCATTGGTAC
Statistics
Matches: 235, Mismatches: 29, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
47 2 0.01
48 204 0.87
49 29 0.12
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (48 bp):
CTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGC
Found at i:78421635 original size:144 final size:144
Alignment explanation
Indices: 78421371--78421637 Score: 385
Period size: 144 Copynumber: 1.8 Consensus size: 144
78421361 AAATGAGATT
* * *
78421371 CTGTGTAAGACCATGTCTGGGACATGGCATCGACATCTGAGATGTGTGCCTGTGTAGGACCATGT
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGACATC-GAGATATGTGCCAGTGTAAGACCATGT
** ** * *
78421436 CTGGGACATGTTATCGGTGATGATATATGTGCCTGTGTAAGACCATGTCTGGGACATGTTATCGG
65 CTGGGACATGGCATCGGCAATGATATATGTGCCAGTGTAAGACCATGTCTAGGACATGTTATCGG
78421501 TGATGATATATGTGC
130 TGATGATATATGTGC
*
78421516 CTGTGTAAGACCATGTCTGGGACATGGCATC-AGCGATC-ATATATGTGCCAGTGTAAGACCATG
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGA-C-ATCGAGATATGTGCCAGTGTAAGACCATG
* *
78421579 TCTTGGACATGGCATCGGCAATGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATG
64 TCTGGGACATGGCATCGGCAATGATATATGTGCCAGTGTAAGACCATGTCTAGGACATG
78421638 GCATAGACGA
Statistics
Matches: 108, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
144 73 0.68
145 32 0.30
146 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (144 bp):
CTGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATATGTGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCAATGATATATGTGCCAGTGTAAGACCATGTCTAGGACATGTTATCGGT
GATGATATATGTGC
Found at i:78424222 original size:6 final size:6
Alignment explanation
Indices: 78424204--78424297 Score: 77
Period size: 6 Copynumber: 15.3 Consensus size: 6
78424194 AAGAAACATT
*
78424204 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
78424253 ATCAAA ATCAAA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
78424298 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
5 4 0.06
6 59 0.82
7 7 0.10
8 2 0.03
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:78424255 original size:31 final size:31
Alignment explanation
Indices: 78424218--78424297 Score: 124
Period size: 31 Copynumber: 2.6 Consensus size: 31
78424208 GAACTAGAAT
* *
78424218 CAGAATCAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAAAATCAGAATCAGAATCAGGTAA
* *
78424249 CAGAATCAAAATCAAAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGAATCAGGTAA
78424280 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
78424298 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.17
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGAATCAGGTAA
Found at i:78424830 original size:27 final size:27
Alignment explanation
Indices: 78424800--78425103 Score: 376
Period size: 27 Copynumber: 11.2 Consensus size: 27
78424790 TAACACCCTA
** *
78424800 AGGGTAAAATGGTAATTTTATAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* * * *
78424827 AGGGTAAAACGGTAATTCTATAAATCA
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
78424854 AGGGTAAAACAATAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
78424881 AGGGTAAAACAGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* * *
78424908 ATGGTAAAACAGTAATTCTGTCAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
78424935 AGGGTAAAATAGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
78424962 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
78424989 AGGGTAAAATAGTAATTTTGTAAATTG
1 AGGGTAAAACAGTAATTTTGTAAATCG
* *
78425016 AGGGTAAATC-GATAATTTTATAAATCG
1 AGGGTAAAACAG-TAATTTTGTAAATCG
* * *
78425043 AGGGTAAAATAGTAATTCTATAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCG
*
78425070 AGGGTAAAACAGTAATTTTTGTAATTCG
1 AGGGTAAAACAGTAA-TTTTGTAAATCG
78425098 AGGGTA
1 AGGGTA
78425104 CTTTGATAAT
Statistics
Matches: 242, Mismatches: 32, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.00
27 225 0.93
28 16 0.07
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
AGGGTAAAACAGTAATTTTGTAAATCG
Found at i:78425154 original size:27 final size:27
Alignment explanation
Indices: 78425124--78425248 Score: 114
Period size: 27 Copynumber: 4.7 Consensus size: 27
78425114 TTTACATGTC
*
78425124 GAGGGTATTTCAGTAATTTTCCAAACT
1 GAGGGTATTTCAGTAATTTTACAAACT
*
78425151 GAGGGTATTTCGGTAATTTTACAAA-T
1 GAGGGTATTTCAGTAATTTTACAAACT
* * ** * *
78425177 CAAGGATATTTGTGTAATTTTATAAACC
1 -GAGGGTATTTCAGTAATTTTACAAACT
* *
78425205 GGGGGTACTTT-GGTAATTTTAC-AACT
1 GAGGGTA-TTTCAGTAATTTTACAAACT
78425231 G-GGGTATTTCAGTAATTT
1 GAGGGTATTTCAGTAATTT
78425249 GGTAAACTAA
Statistics
Matches: 79, Mismatches: 15, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
24 3 0.04
25 12 0.15
26 5 0.06
27 56 0.71
28 3 0.04
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (27 bp):
GAGGGTATTTCAGTAATTTTACAAACT
Found at i:78425187 original size:54 final size:54
Alignment explanation
Indices: 78425096--78425228 Score: 151
Period size: 54 Copynumber: 2.5 Consensus size: 54
78425086 TTTTGTAATT
* ** * * *
78425096 CGAGGGTACTTTGATAATTTTACATGTCGAGGGTATTTCAGTAATTTTCCAAAC
1 CGAGGGTACTTTGGTAATTTTACAAATCAAGGATATTTCAGTAATTTTACAAAC
* ** *
78425150 TGAGGGTA-TTTCGGTAATTTTACAAATCAAGGATATTTGTGTAATTTTATAAAC
1 CGAGGGTACTTT-GGTAATTTTACAAATCAAGGATATTTCAGTAATTTTACAAAC
*
78425204 CGGGGGTACTTTGGTAATTTTACAA
1 CGAGGGTACTTTGGTAATTTTACAA
78425229 CTGGGGTATT
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
53 3 0.05
54 59 0.91
55 3 0.05
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.38
Consensus pattern (54 bp):
CGAGGGTACTTTGGTAATTTTACAAATCAAGGATATTTCAGTAATTTTACAAAC
Found at i:78438634 original size:40 final size:40
Alignment explanation
Indices: 78438590--78438717 Score: 193
Period size: 40 Copynumber: 3.1 Consensus size: 40
78438580 TTAAGTCCGG
* * *
78438590 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACTCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG--AT
* *
78438632 ATATATTACCAGCACGAAGCCGGTGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
78438672 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
78438712 ATATAT
1 ATATAT
78438718 ATTATATTGA
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 46 0.58
42 33 0.42
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (40 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:78438652 original size:42 final size:42
Alignment explanation
Indices: 78438590--78438721 Score: 205
Period size: 42 Copynumber: 3.2 Consensus size: 42
78438580 TTAAGTCCGG
* * *
78438590 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACTCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* *
78438632 ATATATTACCAGCACGAAGCCGGTGGGATTTAACCCGG--AT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
78438672 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
78438714 ATATATTA
1 ATATATTA
78438722 TATTGATAGC
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
40 38 0.47
42 43 0.53
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (42 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:78440279 original size:11 final size:11
Alignment explanation
Indices: 78440263--78440288 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
78440253 AAAAAGGTTA
78440263 ATATAATATAT
1 ATATAATATAT
78440274 ATATAATATAT
1 ATATAATATAT
78440285 ATAT
1 ATAT
78440289 TAACAATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
ATATAATATAT
Found at i:78445337 original size:20 final size:17
Alignment explanation
Indices: 78445302--78445334 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
78445292 AGCATGAGTT
78445302 TGAATATTATTGTTATG
1 TGAATATTATTGTTATG
78445319 TGAATATTATTGTTAT
1 TGAATATTATTGTTAT
78445335 TATTTATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (17 bp):
TGAATATTATTGTTATG
Found at i:78446105 original size:50 final size:50
Alignment explanation
Indices: 78446030--78446124 Score: 136
Period size: 50 Copynumber: 1.9 Consensus size: 50
78446020 TACATGGCAC
* * **
78446030 CATATCATGTAAGACCATAGCTGGTGGGATATGGTATCATATGGAAATAA
1 CATATCATATAAGACCATAACTGGTGGGATATGACATCATATGGAAATAA
* *
78446080 CATATCATATAAGACCATAATTGGTGGGTTATGACATCATATGGA
1 CATATCATATAAGACCATAACTGGTGGGATATGACATCATATGGA
78446125 TAGAACTAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (50 bp):
CATATCATATAAGACCATAACTGGTGGGATATGACATCATATGGAAATAA
Found at i:78449160 original size:40 final size:40
Alignment explanation
Indices: 78449115--78449386 Score: 289
Period size: 40 Copynumber: 6.8 Consensus size: 40
78449105 ATAACCACAA
* * *
78449115 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
78449155 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * * *
78449195 GCACAAATGCCTTCAGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * *
78449235 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
78449275 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
78449315 GCATAAATGCCTTCGAGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * *
78449355 GCATAAATGCCTTCGGGACTTGGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
78449387 CATTCAAATG
Statistics
Matches: 203, Mismatches: 26, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
39 4 0.02
40 192 0.95
41 7 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:78449199 original size:80 final size:80
Alignment explanation
Indices: 78449115--78449385 Score: 339
Period size: 80 Copynumber: 3.4 Consensus size: 80
78449105 ATAACCACAA
* * * * * *
78449115 GCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
78449179 CCGGATATATCAACTC
65 CCGGATATATCAACTC
* * *
78449195 GCACAAATGCCTTCAGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCC
* *
78449260 CGGGTATAGCAACTC
66 CGGATATATCAACTC
* * *
78449275 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGAGACTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCC
* *
78449340 CGGATAAAATC-ACTA
66 CGGAT-ATATCAACTC
* * *
78449355 GCATAAATGCCTTCGGGACTTGGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
78449386 TCATTCAAAT
Statistics
Matches: 165, Mismatches: 24, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
80 159 0.96
81 6 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATCAACTC
Found at i:78449382 original size:120 final size:120
Alignment explanation
Indices: 78449095--78449371 Score: 434
Period size: 120 Copynumber: 2.3 Consensus size: 120
78449085 TCTTCGGAAT
* * *
78449095 TTAGCCC-GATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
* * *
78449159 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCAGGTC
66 AAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTAGCACAAATGCCTTCAGGAC
78449214 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
*
78449279 AAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTC-GAGAC
66 AAATGCCTTCGGGTCTTAGCCCGGAT-AAATCAACTAGCACAAATGCCTTCAG-GAC
* *
78449334 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGG
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGG
78449372 ACTTGGCCCG
Statistics
Matches: 146, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
119 8 0.05
120 134 0.92
121 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (120 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTAGCACAAATGCCTTCAGGAC
Found at i:78454421 original size:30 final size:30
Alignment explanation
Indices: 78454387--78454454 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
78454377 TGGCCCAAGA
* * *
78454387 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTAAAGGACTAATAGT
*
78454417 GTAAATATGAAAAGTTAAAGGACTAATAGT
1 GTAAATATCAAAAGTTAAAGGACTAATAGT
78454447 GTAAATAT
1 GTAAATAT
78454455 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 15 0.45
30 18 0.55
ACGTcount: A:0.49, C:0.04, G:0.18, T:0.29
Consensus pattern (30 bp):
GTAAATATCAAAAGTTAAAGGACTAATAGT
Found at i:78456923 original size:46 final size:46
Alignment explanation
Indices: 78456871--78457134 Score: 413
Period size: 46 Copynumber: 5.7 Consensus size: 46
78456861 AGTGTGCTCT
*
78456871 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
78456917 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGACAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
78456963 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
78457009 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
78457055 CTGATATGAAATGTGTAAGACCATGATTGAAAGATATCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
78457101 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
78457135 CACTATAGCA
Statistics
Matches: 203, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.00
46 202 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:78464237 original size:54 final size:53
Alignment explanation
Indices: 78464178--78464466 Score: 225
Period size: 54 Copynumber: 5.4 Consensus size: 53
78464168 CATCATATAG
** *
78464178 GGGCAAAACAGTCATCCTACCACATAAAGGCAAAATAGTCATTTTACCTTATAA
1 GGGCAAAACAGTCATTTTACCACATAAAGGCAAAATAGTCATTTTA-CTCATAA
* *
78464232 GGGCAAAACCA-TCATTTTACAACAT-AAGGACAAAACT-GTCATTTTAATACATAA
1 GGGCAAAA-CAGTCATTTTACCACATAAAGG-CAAAA-TAGTCATTTTACT-CATAA
* * * * * *
78464286 GGGCAAAACAGTCATTTTA--AAACAAGGGCAAAACAGTCATTTTTCCACATAA
1 GGGCAAAACAGTCATTTTACCACATAAAGGCAAAATAGTCA-TTTTACTCATAA
* * * * *
78464338 GGGTAAAATC-GTCATTTTATCACAT-AAGGACAAAATCGTCGTTTTA-TTATACAA
1 GGGCAAAA-CAGTCATTTTACCACATAAAGG-CAAAATAGTCATTTTACTCAT--AA
* * * * *
78464392 GGGCAAAATAGTCATTTTGCCACATAAGGGCAAAATCGTCATTTTATCACATAA
1 GGGCAAAACAGTCATTTTACCACATAAAGGCAAAATAGTCATTTTA-CTCATAA
*
78464446 GGGCAAAATAGTCATTTTACC
1 GGGCAAAACAGTCATTTTACC
78464467 CTACAGGGGT
Statistics
Matches: 186, Mismatches: 31, Indels: 36
0.74 0.12 0.14
Matches are distributed among these distances:
52 34 0.18
53 22 0.12
54 122 0.66
55 6 0.03
56 2 0.01
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.27
Consensus pattern (53 bp):
GGGCAAAACAGTCATTTTACCACATAAAGGCAAAATAGTCATTTTACTCATAA
Found at i:78464318 original size:25 final size:26
Alignment explanation
Indices: 78464178--78464464 Score: 199
Period size: 27 Copynumber: 10.7 Consensus size: 26
78464168 CATCATATAG
** *
78464178 GGGCAAAACAGTCATCCTACCACATAA
1 GGGCAAAACAGTCATTTTA-AACATAA
* * *
78464205 AGGCAAAATAGTCATTTT-ACCTTATAA
1 GGGCAAAACAGTCATTTTAAAC--ATAA
78464232 GGGCAAAACCA-TCATTTTACAACATAA
1 GGGCAAAA-CAGTCATTTTA-AACATAA
* *
78464259 GGACAAAACTGTCATTTTAATACATAA
1 GGGCAAAACAGTCATTTTAA-ACATAA
*
78464286 GGGCAAAACAGTCATTTTAAA-ACAA
1 GGGCAAAACAGTCATTTTAAACATAA
**
78464311 GGGCAAAACAGTCATTTTTCCACATAA
1 GGGCAAAACAGTCA-TTTTAAACATAA
* *
78464338 GGGTAAAATC-GTCATTTTATCACATAA
1 GGGCAAAA-CAGTCATTTTA-AACATAA
* * * * *
78464365 GGACAAAATC-GTCGTTTTATTATACAA
1 GGGCAAAA-CAGTCATTTTA-AACATAA
* **
78464392 GGGCAAAATAGTCATTTTGCCACATAA
1 GGGCAAAACAGTCATTTT-AAACATAA
*
78464419 GGGCAAAATC-GTCATTTTATCACATAA
1 GGGCAAAA-CAGTCATTTTA-AACATAA
*
78464446 GGGCAAAATAGTCATTTTA
1 GGGCAAAACAGTCATTTTA
78464465 CCCTACAGGG
Statistics
Matches: 209, Mismatches: 35, Indels: 32
0.76 0.13 0.12
Matches are distributed among these distances:
25 18 0.09
26 12 0.06
27 175 0.84
28 2 0.01
29 2 0.01
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (26 bp):
GGGCAAAACAGTCATTTTAAACATAA
Found at i:78464487 original size:27 final size:27
Alignment explanation
Indices: 78464456--78464703 Score: 275
Period size: 27 Copynumber: 9.3 Consensus size: 27
78464446 GGGCAAAATA
** * *
78464456 GTCATTTTACCCTACAGGGGTATTACA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
78464483 ATCATTTTACCCTATGGAGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
78464510 ATCATTTTACCATATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
78464537 GTCATTTTACCCTAT-GGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
78464563 GTCATTTTATCCTAT-AGGGAATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * **
78464589 ATCCTTTTACTCTATGGGGGTATTTTA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
78464616 GTCATTTTACCCTATAGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
78464643 GTTATTTTACCCTATGGGGGTATTTCT
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
78464670 ATTATTTTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
78464697 GTCATTT
1 GTCATTT
78464704 ATTCATCCCA
Statistics
Matches: 186, Mismatches: 34, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 45 0.24
27 141 0.76
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:78464488 original size:81 final size:81
Alignment explanation
Indices: 78464198--78464493 Score: 330
Period size: 81 Copynumber: 3.7 Consensus size: 81
78464188 GTCATCCTAC
* * * * * *
78464198 CACATAAAGGCAAAATAGTCATTTTACCTTATAAGGGCAAAACCATCATTTTACAACATAAGGAC
1 CACATAAGGGCAAAATAGTCATTTTACCATACAAGGGCAAAACAATCATTTTACCACATAAGGGC
78464263 AAAA-CTGTCATTTTAAT
66 AAAATC-GTCATTTT-AT
* * * * *
78464280 -ACATAAGGGCAAAACAGTCATTTTA--AAACAAGGGCAAAACAGTCATTTTTCCACATAAGGGT
1 CACATAAGGGCAAAATAGTCATTTTACCATACAAGGGCAAAACAATCATTTTACCACATAAGGGC
78464342 AAAATCGTCATTTTAT
66 AAAATCGTCATTTTAT
* * * ** * * *
78464358 CACATAAGGACAAAATCGTCGTTTTATTATACAAGGGCAAAATAGTCATTTTGCCACATAAGGGC
1 CACATAAGGGCAAAATAGTCATTTTACCATACAAGGGCAAAACAATCATTTTACCACATAAGGGC
78464423 AAAATCGTCATTTTAT
66 AAAATCGTCATTTTAT
* * * **
78464439 CACATAAGGGCAAAATAGTCATTTTACCCTACAGGGGTATTACAATCATTTTACC
1 CACATAAGGGCAAAATAGTCATTTTACCATACAAGGGCAAAACAATCATTTTACC
78464494 CTATGGAGGT
Statistics
Matches: 178, Mismatches: 32, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
78 2 0.01
79 61 0.34
80 1 0.01
81 114 0.64
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.28
Consensus pattern (81 bp):
CACATAAGGGCAAAATAGTCATTTTACCATACAAGGGCAAAACAATCATTTTACCACATAAGGGC
AAAATCGTCATTTTAT
Found at i:78470165 original size:24 final size:24
Alignment explanation
Indices: 78470132--78470205 Score: 103
Period size: 24 Copynumber: 3.0 Consensus size: 24
78470122 AAGGCTATCA
78470132 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
78470156 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
* *
78470180 GGAGAAAATTTAGGAACTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
78470205 G
1 G
78470206 AGCAGGAGTT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 40 0.93
25 3 0.07
ACGTcount: A:0.39, C:0.05, G:0.35, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:78472734 original size:27 final size:27
Alignment explanation
Indices: 78472677--78473163 Score: 501
Period size: 27 Copynumber: 18.0 Consensus size: 27
78472667 ATGAACATAC
* * ***
78472677 ATCACATAGGGGCAAAACAGTCATCCA
1 ATCACATAAGGGCAAAATAGTCATTTT
* * *
78472704 ACCATATAAAGGCAAAATAGTCATTTT
1 ATCACATAAGGGCAAAATAGTCATTTT
* *
78472731 ACCACATAAGGGTAAAATCA-TCATTTT
1 ATCACATAAGGGCAAAAT-AGTCATTTT
* *
78472758 ATCACATAAGGACAAAATAATCATTTT
1 ATCACATAAGGGCAAAATAGTCATTTT
* * * * *
78472785 ATCATACAAGGACAAAACAATCATTTT
1 ATCACATAAGGGCAAAATAGTCATTTT
** *
78472812 GCCACATAAGGGCAAAATCGTCATTTT
1 ATCACATAAGGGCAAAATAGTCATTTT
* ** *
78472839 ATCACATATGGAAAAAATCGTCATTTT
1 ATCACATAAGGGCAAAATAGTCATTTT
* * *
78472866 AACACATAAGGGCAAAACAGTAATTTT
1 ATCACATAAGGGCAAAATAGTCATTTT
*
78472893 -TCCACATAAGGGCAAAATCGTCATTTT
1 AT-CACATAAGGGCAAAATAGTCATTTT
* * *
78472920 ATCACACAATGGCAAAACAGTCATTTT
1 ATCACATAAGGGCAAAATAGTCATTTT
** * *
78472947 GCCACATAAGGGTAAAACAGTCATTTT
1 ATCACATAAGGGCAAAATAGTCATTTT
** *
78472974 ATCACATAAAAGCAAAATCGTCATTTT
1 ATCACATAAGGGCAAAATAGTCATTTT
78473001 ATCACATAAGGGCAAAATAGTCATTTT
1 ATCACATAAGGGCAAAATAGTCATTTT
* *
78473028 ATCACACAAGGGCAAAACAGTCATTTT
1 ATCACATAAGGGCAAAATAGTCATTTT
** * *
78473055 GCCACATAAGGGTAAAACAGTCATTTT
1 ATCACATAAGGGCAAAATAGTCATTTT
**
78473082 ATCACATAAGGGCAAAACCGTCATTTT
1 ATCACATAAGGGCAAAATAGTCATTTT
* *
78473109 ATCACATAAAGGCAAAATCGTCATTTT
1 ATCACATAAGGGCAAAATAGTCATTTT
*
78473136 ATCACATAAGGGCAAAACAGTCATTTT
1 ATCACATAAGGGCAAAATAGTCATTTT
78473163 A
1 A
78473164 CCCTACAGGG
Statistics
Matches: 381, Mismatches: 75, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
26 1 0.00
27 378 0.99
28 2 0.01
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (27 bp):
ATCACATAAGGGCAAAATAGTCATTTT
Found at i:78473184 original size:27 final size:26
Alignment explanation
Indices: 78473155--78473404 Score: 304
Period size: 27 Copynumber: 9.3 Consensus size: 26
78473145 GGGCAAAACA
* *
78473155 GTCATTTTACCCTACAGGGGTATTAT-A
1 GTCATTTTACCCTA-TGGGGTATT-TCG
78473182 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
*
78473209 GTTATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATG-GGGTATTTCG
* *
78473236 ATCATTTGACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATG-GGGTATTTCG
*
78473263 GTCATTTTATCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATG-GGGTATTTCG
*
78473290 GTCATTTTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTAT-GGGGTATTTCG
**
78473317 GTCATTTTACAATATGGGGTATTTCG
1 GTCATTTTACCCTATGGGGTATTTCG
* *
78473343 GTCATTTTACCCTATAAGGGTATTTCT
1 GTCATTTTACCCTAT-GGGGTATTTCG
*
78473370 GTTATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
78473397 GTCATTTT
1 GTCATTTT
78473405 TTCATCCCAA
Statistics
Matches: 195, Mismatches: 23, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
26 25 0.13
27 169 0.87
28 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.42
Consensus pattern (26 bp):
GTCATTTTACCCTATGGGGTATTTCG
Found at i:78473241 original size:81 final size:80
Alignment explanation
Indices: 78473156--78473404 Score: 340
Period size: 81 Copynumber: 3.1 Consensus size: 80
78473146 GGCAAAACAG
* * *
78473156 TCATTTTACCCTACAGGGGTATTAT-AGTCATTTTACCCTATGGGGGTATTTCGGTTATTTTACC
1 TCATTTTACCCTA-TGGGGTATT-TCGGTCATTTTACCCTATGAGGGTATTTCGGTTATTTTACC
*
78473220 CTATGAGGGTATTTCGA
64 CTATGGGGGTATTTCGA
* * *
78473237 TCATTTGACCCTATGAGGGTATTTCGGTCATTTTATCCTATGAGGGTATTTCGGTCATTTTACCC
1 TCATTTTACCCTATG-GGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGGTTATTTTACCC
78473302 TATGGGGGTATTTC-A
65 TATGGGGGTATTTCGA
** * *
78473317 GTCATTTTACAATATGGGGTATTTCGGTCATTTTACCCTATAAGGGTATTTCTGTTATTTTACCC
1 -TCATTTTACCCTATGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGGTTATTTTACCC
*
78473382 TATGGGGGTATTTCGG
65 TATGGGGGTATTTCGA
78473398 TCATTTT
1 TCATTTT
78473405 TTCATCCCAA
Statistics
Matches: 149, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
80 69 0.46
81 80 0.54
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.43
Consensus pattern (80 bp):
TCATTTTACCCTATGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGGTTATTTTACCCT
ATGGGGGTATTTCGA
Found at i:78473377 original size:80 final size:80
Alignment explanation
Indices: 78473182--78473404 Score: 331
Period size: 80 Copynumber: 2.8 Consensus size: 80
78473172 GGGTATTATA
* * * *
78473182 GTCATTTTACCCTATGGGGGTATTTCGGTTATTTTACCCTATGAGGGTATTTCGATCATTTGACC
1 GTCATTTTACCCTATGAGGGTATTTCGGTTATTTTACCCTATGGGGGTATTTCG-TCATTTTACA
*
78473247 CTATGAGGGTATTTCG
65 ATATGAGGGTATTTCG
* *
78473263 GTCATTTTATCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACA
1 GTCATTTTACCCTATGAGGGTATTTCGGTTATTTTACCCTATGGGGGTATTTC-GTCATTTTACA
78473328 ATATG-GGGTATTTCG
65 ATATGAGGGTATTTCG
* *
78473343 GTCATTTTACCCTATAAGGGTATTTCTGTTATTTTACCCTATGGGGGTATTTCGGTCATTTT
1 GTCATTTTACCCTATGAGGGTATTTCGGTTATTTTACCCTATGGGGGTATTTC-GTCATTTT
78473405 TTCATCCCAA
Statistics
Matches: 129, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
80 67 0.52
81 61 0.47
82 1 0.01
ACGTcount: A:0.19, C:0.16, G:0.22, T:0.43
Consensus pattern (80 bp):
GTCATTTTACCCTATGAGGGTATTTCGGTTATTTTACCCTATGGGGGTATTTCGTCATTTTACAA
TATGAGGGTATTTCG
Found at i:78474646 original size:16 final size:16
Alignment explanation
Indices: 78474622--78474652 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
78474612 TTTTTAAAAA
78474622 AAATCCAAAAAAATTT
1 AAATCCAAAAAAATTT
*
78474638 AAATTCAAAAAAATT
1 AAATCCAAAAAAATT
78474653 ACATTCATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.10, G:0.00, T:0.26
Consensus pattern (16 bp):
AAATCCAAAAAAATTT
Found at i:78474777 original size:30 final size:30
Alignment explanation
Indices: 78474742--78474805 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
78474732 CAGCCTGGAG
*
78474742 ACACGGTCGTGTGTAATACACGGCCTAGAC
1 ACACGGTCGTGTGTAATACACGGCCTAAAC
*
78474772 ACACGGTCGTGTGTGATACACGGCCTAAAC
1 ACACGGTCGTGTGTAATACACGGCCTAAAC
78474802 ACAC
1 ACAC
78474806 AGGCGAGTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.28, C:0.28, G:0.25, T:0.19
Consensus pattern (30 bp):
ACACGGTCGTGTGTAATACACGGCCTAAAC
Done.