Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 241 of 325
Found at i:78827920 original size:33 final size:34
Alignment explanation
Indices: 78827877--78827951 Score: 116
Period size: 34 Copynumber: 2.2 Consensus size: 34
78827867 AGTGATAGTC
*
78827877 CAGTAACAGTGT-GGCCTTAGCCCATTACAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
*
78827910 CAGTATCAGTGTGGGCCTTAGCCCATTATAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
*
78827944 CAATATCA
1 CAGTATCA
78827952 TAAATGCAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 11 0.29
34 27 0.71
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
Found at i:78828407 original size:17 final size:19
Alignment explanation
Indices: 78828371--78828407 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
78828361 AAAGCCCACA
78828371 ACACGACCCATGTGGGCCC
1 ACACGACCCATGTGGGCCC
*
78828390 ACACG-CCCGTGT-GGCCC
1 ACACGACCCATGTGGGCCC
78828407 A
1 A
78828408 ATAAGCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.19, C:0.43, G:0.27, T:0.11
Consensus pattern (19 bp):
ACACGACCCATGTGGGCCC
Found at i:78831130 original size:40 final size:40
Alignment explanation
Indices: 78831068--78831314 Score: 235
Period size: 40 Copynumber: 6.2 Consensus size: 40
78831058 CGGATGATAA
* *
78831068 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATAT
* *
78831108 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATAT
* * *
78831148 CTGGGCTAAGTCCTGAAGGCGTTTGTGCGA--GCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--ATAT
*
78831188 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
* * *
78831226 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATAT
* *
78831267 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-GCTAATAT
78831307 CC-GGCTAA
1 CCGGGCTAA
78831315 ACTCCGAAGG
Statistics
Matches: 174, Mismatches: 20, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 39 0.22
40 124 0.71
41 5 0.03
42 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
Found at i:78831285 original size:119 final size:120
Alignment explanation
Indices: 78831068--78831291 Score: 308
Period size: 119 Copynumber: 1.9 Consensus size: 120
78831058 CGGATGATAA
* * *
78831068 CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
* * * * *
78831133 TGCGAGCTACTATATCTGGGCTAAGTCCTGAAGGCGTTTGTGCGAGCTATTATAT
66 TGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAT
* * * *
78831188 CCGGGCTAAGTCCCGA-AGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAGA-GCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTC
*
78831251 GTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
65 GTGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
78831292 AGCTAGTGGC
Statistics
Matches: 90, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
119 62 0.69
120 28 0.31
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
TGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAT
Found at i:78831313 original size:79 final size:78
Alignment explanation
Indices: 78831108--78831314 Score: 254
Period size: 79 Copynumber: 2.6 Consensus size: 78
78831098 GTGGCTAATT
* * * *
78831108 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCTGGGCTAAGTCCTGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATC-CGGCTAAGTCCCGAAGGCATTTG
* * *
78831173 TGCGAGCTATTATAT
64 TGCAAGCTACTATAA
*
78831188 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCC-GGCTAAGTCCCGAAGGCATTTG
*
78831252 TGCAAGTTACTATAA
64 TGCAAGCTACTATAA
* * *
78831267 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGCTAA
78831315 ACTCCGAAGG
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
79 71 0.65
80 38 0.35
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGCTAAGTCCCGAAGGCATTTGTG
CAAGCTACTATAA
Found at i:78838427 original size:29 final size:28
Alignment explanation
Indices: 78838372--78838455 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
78838362 CCTGTATCTA
* *
78838372 GCCCATTAAGCCCAATCATATTCATATG
1 GCCCATTAGGCCCAATCACATTCATATG
*
78838400 GCCCATTAGGCCCAAATCACATTTATATG
1 GCCCATTAGGCCC-AATCACATTCATATG
*
78838429 GCCCGTTAGGCCCAATCACATTCATAT
1 GCCCATTAGGCCCAATCACATTCATAT
78838456 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
28 25 0.50
29 25 0.50
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.27
Consensus pattern (28 bp):
GCCCATTAGGCCCAATCACATTCATATG
Found at i:78841596 original size:29 final size:29
Alignment explanation
Indices: 78841555--78841644 Score: 103
Period size: 29 Copynumber: 3.1 Consensus size: 29
78841545 AACCATATTC
*
78841555 ATATGGCCTATTAGGCCCAAATCAC-TTGT
1 ATATGGCCCATTAGGCCCAAATCACATT-T
*
78841584 ATATGGCCCATTAGGCCCAAATCCCATTT
1 ATATGGCCCATTAGGCCCAAATCACATTT
* * * *
78841613 ATGTGGCCCGTTAGGCCC-AGTCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTT
78841641 ATAT
1 ATAT
78841645 TCATGCTCAT
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
28 10 0.19
29 40 0.77
30 2 0.04
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.29
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTT
Found at i:78843130 original size:16 final size:16
Alignment explanation
Indices: 78843109--78843157 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
78843099 AAAAATTCAA
78843109 GATTTCGAGATTTTTG
1 GATTTCGAGATTTTTG
*
78843125 GATTTCGAGATTTTTA
1 GATTTCGAGATTTTTG
* *
78843141 GATTTTGGGATTTTTG
1 GATTTCGAGATTTTTG
78843157 G
1 G
78843158 GGTGTTACAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.18, C:0.04, G:0.27, T:0.51
Consensus pattern (16 bp):
GATTTCGAGATTTTTG
Found at i:78846067 original size:28 final size:29
Alignment explanation
Indices: 78846035--78846149 Score: 119
Period size: 29 Copynumber: 4.0 Consensus size: 29
78846025 TACATGTATC
*
78846035 TGGCCCATTA-ATCCC-AATCATATTCATA
1 TGGCCCATTAGA-CCCAAATCACATTCATA
* *
78846063 TGGCCCATTAGACCCAAATCACCTTTATA
1 TGGCCCATTAGACCCAAATCACATTCATA
* * *
78846092 TGGCCCATTAGGCACAAATCACATTTATA
1 TGGCCCATTAGACCCAAATCACATTCATA
* * *
78846121 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGACCCAAATCACATTCATA
78846149 T
1 T
78846150 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
28 25 0.33
29 50 0.67
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
TGGCCCATTAGACCCAAATCACATTCATA
Found at i:78846230 original size:17 final size:18
Alignment explanation
Indices: 78846208--78846241 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
78846198 TCCCTATTAT
78846208 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
78846225 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
78846242 TCTGGCCCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:78847637 original size:16 final size:16
Alignment explanation
Indices: 78847616--78847647 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
78847606 AAAAATTCAA
*
78847616 GATTTTGGGATTTTTG
1 GATTTTAGGATTTTTG
78847632 GATTTTAGGATTTTTG
1 GATTTTAGGATTTTTG
78847648 TGGTGTTACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.28, T:0.56
Consensus pattern (16 bp):
GATTTTAGGATTTTTG
Found at i:78853069 original size:46 final size:45
Alignment explanation
Indices: 78852997--78853216 Score: 156
Period size: 46 Copynumber: 4.7 Consensus size: 45
78852987 TATGTGTGCT
* * * *
78852997 AGTGTAAGACATGTTTGGAAAATGCATCAGCCACAGCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAGAG-ATGAGAGCC
* * * * *
78853043 AATGTAAGATATGTCTGGGACATGCATCGGCCTTGAGAT-ATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCC-AGAGATGA---GAGCC
* *
78853091 AGTGTAAGACATGTCTGGGACATGCAT-TGGCATTGAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCA--GAGATGAGAGCC
* * * * * * *
78853137 AGTGTAAGACATGTCTGGGACATGCACCGGCCTCGCGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCC-AGAGAT-GA-GAGCC
*
78853185 AGTGTAAGACCTGTCTGGGACATAGCATCAGC
1 AGTGTAAGACATGTCTGGGACAT-GCATCAGC
78853217 TTGTGGTGTG
Statistics
Matches: 136, Mismatches: 26, Indels: 21
0.74 0.14 0.11
Matches are distributed among these distances:
45 1 0.01
46 62 0.46
47 7 0.05
48 59 0.43
49 7 0.05
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCAGAGATGAGAGCC
Found at i:78853097 original size:48 final size:46
Alignment explanation
Indices: 78853039--78853351 Score: 201
Period size: 48 Copynumber: 6.6 Consensus size: 46
78853029 ACAGCATGAG
* *
78853039 AGCCAATGTAAGATATGTCTGGGACATGCATCGGCCTTGAGATATTTA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATA--TA
* * *
78853087 AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGATGA-G
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGAT-ATA
* * *
78853133 AGCCAGTGTAAGACATGTCTGGGACATGCACCGGCCTCGCGATATACA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATAT--A
* * * * * *
78853181 AGCTAGTGTAAGACCTGTCTGGGACATAGCATCAG-CTTGTGGTGT-
1 AGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTTGAGATATA
* * * * * *
78853226 -GTCAGTGTAAGATC-TTTCTAGGACATGGTATCGACAC-CGATAGATGAT-
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTTG--AGAT-ATA
* * *
78853274 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTT-ACTATATGAA
1 AGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTTGA-GATAT--A
*
78853323 AGCCAGTGTAAGACCATGTCTGAGACATG
1 AGCCAGTGTAAGA-CATGTCTGGGACATG
78853352 GCGTCAGCAT
Statistics
Matches: 204, Mismatches: 42, Indels: 37
0.72 0.15 0.13
Matches are distributed among these distances:
44 24 0.12
45 3 0.01
46 42 0.21
47 4 0.02
48 73 0.36
49 46 0.23
50 12 0.06
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATA
Found at i:78853132 original size:94 final size:95
Alignment explanation
Indices: 78853034--78853212 Score: 270
Period size: 94 Copynumber: 1.9 Consensus size: 95
78853024 CAGCCACAGC
* * * **
78853034 ATGAGAGCCAATGTAAGATATGTCTGGGACATGCATCGGCCTTGAGATATTTAAGCCAGTGTAAG
1 ATGAGAGCCAATGTAAGACATGTCTGGGACATGCACCGGCCTCGAGATATACAAGCCAGTGTAAG
78853099 ACATGTCTGGGACAT-GCATTGGCATTGAG
66 ACATGTCTGGGACATAGCATTGGCATTGAG
* * *
78853128 ATGAGAGCCAGTGTAAGACATGTCTGGGACATGCACCGGCCTCGCGATATACAAGCTAGTGTAAG
1 ATGAGAGCCAATGTAAGACATGTCTGGGACATGCACCGGCCTCGAGATATACAAGCCAGTGTAAG
*
78853193 ACCTGTCTGGGACATAGCAT
66 ACATGTCTGGGACATAGCAT
78853213 CAGCTTGTGG
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
94 71 0.95
95 4 0.05
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (95 bp):
ATGAGAGCCAATGTAAGACATGTCTGGGACATGCACCGGCCTCGAGATATACAAGCCAGTGTAAG
ACATGTCTGGGACATAGCATTGGCATTGAG
Found at i:78860969 original size:46 final size:45
Alignment explanation
Indices: 78860814--78860983 Score: 153
Period size: 48 Copynumber: 3.7 Consensus size: 45
78860804 TGATACGTGT
* * *
78860814 GCTAGTGTAAGACATGTCTGGGACATGCATAGCCACAGA-ATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATAGAGA-GAGA
* * * * * * * *
78860859 GCCAGTGTAAGACATATCTGGGACAAGCATTGACCTCGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATAGAGAGA---GA
* * *
78860907 GCTAATGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATAGAGA-GAGA
*
78860953 GCTAGTGTAAGACATGTCTAGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
78860984 AGCCTCGCGA
Statistics
Matches: 98, Mismatches: 22, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
45 32 0.33
46 31 0.32
48 34 0.35
49 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACATAGAGAGAGA
Found at i:78860990 original size:94 final size:93
Alignment explanation
Indices: 78860814--78861010 Score: 243
Period size: 94 Copynumber: 2.1 Consensus size: 93
78860804 TGATACGTGT
* *
78860814 GCTAGTGTAAGACATGTCTGGGACATGCATAGCCACAGAATGAGAGCCAGTGTAAGACATATCTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATAGCCACAGAACGAGAGCCAGTGTAAGACATATCTA
* **
78860879 GGACAAGCATTGACCTCGAGATATTTAA
66 GGACAAGCATAGACCTCGAGATATACAA
* * * ** * *
78860907 GCTAATGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATAGCCACAGA-ACGAGAGCCAGTGTAAGACATATCT
* *
78860972 AGGACATGCATCAG-CCTCGCGATATACAA
65 AGGACAAGCAT-AGACCTCGAGATATACAA
78861001 GCTAGTGTAA
1 GCTAGTGTAA
78861011 TACCTATTTG
Statistics
Matches: 87, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
93 34 0.39
94 52 0.60
95 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATAGCCACAGAACGAGAGCCAGTGTAAGACATATCTA
GGACAAGCATAGACCTCGAGATATACAA
Found at i:78864682 original size:24 final size:24
Alignment explanation
Indices: 78864654--78864706 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
78864644 TAAGGTATGG
78864654 TATGTTTTGGAAATGGTATTAAAC
1 TATGTTTTGGAAATGGTATTAAAC
78864678 TATGTTTTGGAAATGGTATTAAAC
1 TATGTTTTGGAAATGGTATTAAAC
78864702 TATGT
1 TATGT
78864707 GTGTATGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.32, C:0.04, G:0.21, T:0.43
Consensus pattern (24 bp):
TATGTTTTGGAAATGGTATTAAAC
Found at i:78868156 original size:23 final size:22
Alignment explanation
Indices: 78868126--78868326 Score: 242
Period size: 23 Copynumber: 8.7 Consensus size: 22
78868116 TAGGAATCTA
78868126 TCGGCTACATCTCAGTGGTAGCT
1 TCGGCTACAT-TCAGTGGTAGCT
78868149 TCGGCTACATCTCAGTGGTAGCT
1 TCGGCTACAT-TCAGTGGTAGCT
*
78868172 TCGGCTACAATACAGTGGTCA-CT
1 TCGGCTAC-ATTCAGTGGT-AGCT
78868195 TCGGCTACATCTCAGTGGTAGCT
1 TCGGCTACAT-TCAGTGGTAGCT
*
78868218 TCGGCTACAATACAGTGGTAGCT
1 TCGGCTAC-ATTCAGTGGTAGCT
78868241 TCGGCTACATCTCAGTGGTAGCT
1 TCGGCTACAT-TCAGTGGTAGCT
*
78868264 TCGGCTACAATACAGTGGTAGCT
1 TCGGCTAC-ATTCAGTGGTAGCT
* * *
78868287 TCAGCTACGTTACAGTGATAGCT
1 TCGGCTACATT-CAGTGGTAGCT
*
78868310 TCGGCTATATTACAGTG
1 TCGGCTACATT-CAGTG
78868327 TGGCACTTTG
Statistics
Matches: 158, Mismatches: 12, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
22 6 0.04
23 145 0.92
24 7 0.04
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (22 bp):
TCGGCTACATTCAGTGGTAGCT
Found at i:78868197 original size:46 final size:46
Alignment explanation
Indices: 78868138--78868326 Score: 301
Period size: 46 Copynumber: 4.1 Consensus size: 46
78868128 GGCTACATCT
78868138 CAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATA
78868184 CAGTGGTCA-CTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATA
1 CAGTGGT-AGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATA
78868230 CAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATA
* * * * *
78868276 CAGTGGTAGCTTCAGCTACGT-TACAGTGATAGCTTCGGCTATATTA
1 CAGTGGTAGCTTCGGCTACATCT-CAGTGGTAGCTTCGGCTACAATA
78868322 CAGTG
1 CAGTG
78868327 TGGCACTTTG
Statistics
Matches: 135, Mismatches: 5, Indels: 6
0.92 0.03 0.04
Matches are distributed among these distances:
45 2 0.01
46 132 0.98
47 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.29
Consensus pattern (46 bp):
CAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATA
Found at i:78869674 original size:18 final size:18
Alignment explanation
Indices: 78869651--78869686 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
78869641 TATTAAAAAG
*
78869651 GTCGATATATCGTATATT
1 GTCGATATATCATATATT
78869669 GTCGATATATCATATATT
1 GTCGATATATCATATATT
78869687 AGTACAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44
Consensus pattern (18 bp):
GTCGATATATCATATATT
Found at i:78881004 original size:40 final size:40
Alignment explanation
Indices: 78880935--78881140 Score: 272
Period size: 40 Copynumber: 5.2 Consensus size: 40
78880925 AACCCAAGTA
* * * *
78880935 CCTTCGGAATTTAG-CCAGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
78880974 CCTACGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
78881014 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
78881054 CCTTC-GGATCTTAGTCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
78881094 CCTTCGGGACTTAGGCCGAATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
78881134 CCTTCGG
1 CCTTCGG
78881141 ATCTTAGTCC
Statistics
Matches: 147, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 14 0.10
40 130 0.88
41 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:78881067 original size:80 final size:79
Alignment explanation
Indices: 78880935--78881152 Score: 325
Period size: 80 Copynumber: 2.7 Consensus size: 79
78880925 AACCCAAGTA
* * * * *
78880935 CCTTCGGAATTTAGCCAGATATAG-CAACTCGCACAAATGCCTACGGGA-CTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCAGATATAGTC-ACTAGCACAAATGCCTTC-GGATCTTAGTCCGGATATA
78880998 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
78881014 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGTCCGGATATAG
1 CCTTCGGGACTTAG-CCAGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGTCCGGATATAG
78881079 TAACTCGCACAAATG
65 TAACTCGCACAAATG
78881094 CCTTCGGGACTTAGGCC-GAATATAGTCACTAGCACAAATGCCTTCGGATCTTAGTCCGG
1 CCTTCGGGACTTA-GCCAG-ATATAGTCACTAGCACAAATGCCTTCGGATCTTAGTCCGG
78881153 TTATCATCCG
Statistics
Matches: 129, Mismatches: 5, Indels: 9
0.90 0.03 0.06
Matches are distributed among these distances:
79 16 0.12
80 111 0.86
81 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCAGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGTCCGGATATAGT
AACTCGCACAAATG
Found at i:78884441 original size:38 final size:38
Alignment explanation
Indices: 78884384--78884456 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
78884374 GAAGTGTAAG
*
78884384 AAATGTTGAGAGAATTATTCCTATGTGTGATGAATGCA
1 AAATGTTGAGAGAACTATTCCTATGTGTGATGAATGCA
*
78884422 AAATGTTGAGTGAACTATTCCTATGTGTGATGAAT
1 AAATGTTGAGAGAACTATTCCTATGTGTGATGAAT
78884457 ACAATAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (38 bp):
AAATGTTGAGAGAACTATTCCTATGTGTGATGAATGCA
Found at i:78889222 original size:20 final size:20
Alignment explanation
Indices: 78889197--78889260 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
78889187 CAGATACATG
78889197 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
* * * *
78889217 CCCCTGAATTGCACATAC-GTG
1 CCCCTG-TTTGTAC-TTCGGTA
*
78889238 CCCTTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
78889258 CCC
1 CCC
78889261 TAAATTGGAC
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
19 2 0.06
20 16 0.50
21 12 0.38
22 2 0.06
ACGTcount: A:0.14, C:0.33, G:0.19, T:0.34
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:78889240 original size:41 final size:41
Alignment explanation
Indices: 78889180--78889298 Score: 168
Period size: 40 Copynumber: 2.9 Consensus size: 41
78889170 AAAATAATGA
* *
78889180 TGAATTGCAGATACATGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
*
78889221 TGAATTGCACATACGTGCCCTTGTTTGTACTTCGGTA-CCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
78889261 TAAATTGGACATACGTGCCCCTGTCTGTACTTCAGTAC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTAC
78889299 TCCTAGATGT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 35 0.51
41 34 0.49
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.33
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:78896253 original size:20 final size:19
Alignment explanation
Indices: 78896220--78896258 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
78896210 AGTTTTTGAG
*
78896220 AAAATTTCTTAAGTATTCA
1 AAAATTTCTAAAGTATTCA
*
78896239 AAAAGTTTCTAAAGTTTTCA
1 AAAA-TTTCTAAAGTATTCA
78896259 GTTTAGTCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (19 bp):
AAAATTTCTAAAGTATTCA
Found at i:78912113 original size:43 final size:43
Alignment explanation
Indices: 78912025--78912223 Score: 177
Period size: 43 Copynumber: 4.6 Consensus size: 43
78912015 CAATGTCATA
* * * * * * * *
78912025 TCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTACACGTAATCAAACAACGATTCCAATG
* * * * **
78912068 TCCTAGACAGGGTCTTACACGAAATCGAGTAACGATTCCAATG
1 TCCCAGACATGGTCTTACACGTAATCAAACAACGATTCCAATG
* *
78912111 TCCCAAACATGGTCTTACACGTAATCAAACAACGATGT-CAATA
1 TCCCAGACATGGTCTTACACGTAATCAAACAACGAT-TCCAATG
* *
78912154 TCCCAGACATGGTCTTACACGTAATCACAAC-ACAATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCA-AACAACGATTCCAATG
* * *
78912197 TCTCAAACATGGTCTTACATGTAATCA
1 TCCCAGACATGGTCTTACACGTAATCA
78912224 CATCTCGGTA
Statistics
Matches: 126, Mismatches: 27, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
43 122 0.97
44 4 0.03
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCAAACAACGATTCCAATG
Found at i:78919061 original size:17 final size:16
Alignment explanation
Indices: 78919030--78919063 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
78919020 AAATATTATG
78919030 AAATAAAAACAAACAA
1 AAATAAAAACAAACAA
*
78919046 AAATAAACATCAAACAA
1 AAATAAA-AACAAACAA
78919063 A
1 A
78919064 TGCCATCCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAACAAACAA
Found at i:78923193 original size:7 final size:7
Alignment explanation
Indices: 78923181--78923206 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
78923171 CCTTGATGAA
78923181 TTGGGCT
1 TTGGGCT
78923188 TTGGGCT
1 TTGGGCT
78923195 TTGGGCT
1 TTGGGCT
78923202 TTGGG
1 TTGGG
78923207 TCTCATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.46, T:0.42
Consensus pattern (7 bp):
TTGGGCT
Found at i:78924217 original size:17 final size:19
Alignment explanation
Indices: 78924175--78924218 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
78924165 ATGAAATTTT
*
78924175 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
78924194 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
78924212 AA-TATTA
1 AATTATTA
78924219 CTGTAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:78926536 original size:20 final size:20
Alignment explanation
Indices: 78926470--78926536 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
78926460 ATTTTGATAA
*
78926470 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
78926490 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
78926510 ACATGATTTGTTTGATATGC
1 ACATGATATGTATGATATGC
78926530 ACATGAT
1 ACATGAT
78926537 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:78926613 original size:24 final size:24
Alignment explanation
Indices: 78926586--78926728 Score: 225
Period size: 24 Copynumber: 5.9 Consensus size: 24
78926576 GAGGAAGTGC
78926586 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
78926610 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
78926634 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
78926658 AAAAGGCCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
78926682 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
78926706 AAAAGAGGC-TAGGCCTCCAGTTA
1 AAAAG-GGCTTATGCC-CCAGTTA
78926729 CATGATAAAG
Statistics
Matches: 110, Mismatches: 7, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
24 100 0.91
25 10 0.09
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:78928407 original size:29 final size:28
Alignment explanation
Indices: 78928347--78928459 Score: 100
Period size: 29 Copynumber: 4.0 Consensus size: 28
78928337 GTGAGCATAA
* * *
78928347 ATATAAATGTGACTAGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
78928375 ATATAAATGTGATTTGGGCCTAATGGGCG
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
** * * *
78928404 ATATGCAGGTGGTTTGGGCCTAATAGGCC
1 ATATAAATGT-GATTGGGCCTAATGGGCC
* * *
78928433 ATATGAATATGATTGGGCTTAATGGGC
1 ATATAAATGTGATTGGGCCTAATGGGC
78928460 TAGATACAGG
Statistics
Matches: 67, Mismatches: 16, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
28 26 0.39
29 40 0.60
30 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:78931600 original size:26 final size:26
Alignment explanation
Indices: 78931563--78931646 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
78931553 TGATACAAAT
* *
78931563 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
78931589 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
78931615 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
78931641 TGATAA
1 TGATAA
78931647 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:78934000 original size:28 final size:28
Alignment explanation
Indices: 78933968--78934023 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
78933958 TTCCGCAATG
78933968 AAAGTATTTTCCAAAATTAATCACTTTT
1 AAAGTATTTTCCAAAATTAATCACTTTT
78933996 AAAGTATTTTCCAAAATTAATCACTTTT
1 AAAGTATTTTCCAAAATTAATCACTTTT
78934024 CCTAAAAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.14, G:0.04, T:0.43
Consensus pattern (28 bp):
AAAGTATTTTCCAAAATTAATCACTTTT
Found at i:78956288 original size:20 final size:21
Alignment explanation
Indices: 78956253--78956300 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
78956243 TCCGGCCCAT
*
78956253 TATAAACCCAAAAATAATAAA
1 TATAAAACCAAAAATAATAAA
78956274 TATAAAACC-AAAATAATAAA
1 TATAAAACCAAAAATAATAAA
78956294 TAATAAA
1 T-ATAAA
78956301 CGGCCCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (21 bp):
TATAAAACCAAAAATAATAAA
Found at i:78957648 original size:12 final size:12
Alignment explanation
Indices: 78957631--78957655 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78957621 ATATTGTTTT
78957631 ATATTTTCTATA
1 ATATTTTCTATA
78957643 ATATTTTCTATA
1 ATATTTTCTATA
78957655 A
1 A
78957656 ATGTTCTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (12 bp):
ATATTTTCTATA
Found at i:78961929 original size:16 final size:15
Alignment explanation
Indices: 78961903--78961932 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
78961893 AACTATTTTA
78961903 TTACAAATTTCACTC
1 TTACAAATTTCACTC
78961918 TTACATAATTTCACT
1 TTACA-AATTTCACT
78961933 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:78962255 original size:50 final size:49
Alignment explanation
Indices: 78962144--78962255 Score: 143
Period size: 49 Copynumber: 2.3 Consensus size: 49
78962134 CTAGTACGCA
* * *
78962144 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACAAACGCGACCAACAATCCAATACACG
* * * * *
78962193 TAGTAGCATGCACTTAGTACTACAAACGTGTCCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACAAACGCGACC-AACAATCCAATACACG
78962243 TAGTAGCCTGCAC
1 TAGTAGCCTGCAC
78962256 CCTAACCATC
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
49 28 0.53
50 25 0.47
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACAAACGCGACCAACAATCCAATACACG
Found at i:78962260 original size:32 final size:32
Alignment explanation
Indices: 78962224--78962286 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
78962214 ACAAACGTGT
78962224 CCTAACCATCTAATACACGTAGTAGCCTGCAC
1 CCTAACCATCTAATACACGTAGTAGCCTGCAC
*
78962256 CCTAACCATCTAATACATGTAGTAGCCTGCA
1 CCTAACCATCTAATACACGTAGTAGCCTGCA
78962287 GTTAGTACTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.32, C:0.32, G:0.13, T:0.24
Consensus pattern (32 bp):
CCTAACCATCTAATACACGTAGTAGCCTGCAC
Found at i:78962383 original size:50 final size:50
Alignment explanation
Indices: 78962339--78962555 Score: 290
Period size: 50 Copynumber: 4.3 Consensus size: 50
78962329 TAGCTTGAAA
*
78962339 TTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCTTGCAC
1 TTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCAC
* * * *
78962389 TTAGTACTACACATGTGACCTAACCATTTGATACACGTAGTAGCCTGCAC
1 TTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCAC
*
78962439 TTAGTACTACACATGCGACCTAACTATCTGGTACACATAGTAGCCTGCAC
1 TTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCAC
** * *** *
78962489 TTAGTACTACACATATGACCTAAAACCATCTTAAACACATAGTAGCCTGCAC
1 TTAGTACTACACATGCGACCT--AACTATCTGGTACACGTAGTAGCCTGCAC
*
78962541 ATAGTACTACACATG
1 TTAGTACTACACATG
78962556 TGTTCTCACA
Statistics
Matches: 147, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
50 109 0.74
52 38 0.26
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (50 bp):
TTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCAC
Found at i:78962453 original size:100 final size:101
Alignment explanation
Indices: 78962324--78962555 Score: 351
Period size: 100 Copynumber: 2.3 Consensus size: 101
78962314 GTTGGGTACG
* * * * *
78962324 CATAGTAGCTTGAAATTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCTTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACATAGTAGCCTGCAC
* *
78962389 TTAGTACTACACATGTGACCT-AACCAT-TTGATACA
66 TTAGTACTACACATATGACCTAAACCATCTT-AAACA
*
78962424 CGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACATAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACATAGTAGCCTGCAC
78962489 TTAGTACTACACATATGACCTAAAACCATCTTAAACA
66 TTAGTACTACACATATGACCT-AAACCATCTTAAACA
*
78962526 CATAGTAGCCTGCACATAGTACTACACATG
1 CATAGTAGCCTGCACTTAGTACTACACATG
78962556 TGTTCTCACA
Statistics
Matches: 119, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
100 79 0.66
102 38 0.32
103 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (101 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACATAGTAGCCTGCAC
TTAGTACTACACATATGACCTAAACCATCTTAAACA
Found at i:78962502 original size:26 final size:26
Alignment explanation
Indices: 78962370--78962503 Score: 70
Period size: 26 Copynumber: 5.3 Consensus size: 26
78962360 AACTATCTGG
* *
78962370 TACACGTAGTAGCTTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
* *
78962396 TACACAT-GT-GACCT-AACCATTTG-A-
1 TACACATAGTAG-CCTGCA-C-TTAGTAC
*
78962420 TACACGTAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
* * * **
78962446 TACACAT-G-CGACCT-AAC-TATCTGG
1 TACACATAGTAG-CCTGCACTTA-GTAC
78962470 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
78962496 TACACATA
1 TACACATA
78962504 TGACCTAAAA
Statistics
Matches: 76, Mismatches: 18, Indels: 28
0.62 0.15 0.23
Matches are distributed among these distances:
23 2 0.03
24 22 0.29
25 21 0.28
26 29 0.38
27 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACTTAGTAC
Found at i:78962552 original size:26 final size:26
Alignment explanation
Indices: 78962470--78962554 Score: 68
Period size: 26 Copynumber: 3.3 Consensus size: 26
78962460 AACTATCTGG
*
78962470 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACATAGTAC
** **
78962496 TACACATA-T-GACCTAAAACCATCTTA-
1 TACACATAGTAG-CCT-GCA-CATAGTAC
*
78962522 AACACATAGTAGCCTGCACATAGTAC
1 TACACATAGTAGCCTGCACATAGTAC
78962548 TACACAT
1 TACACAT
78962555 GTGTTCTCAC
Statistics
Matches: 42, Mismatches: 11, Indels: 12
0.65 0.17 0.18
Matches are distributed among these distances:
24 1 0.02
25 9 0.21
26 23 0.55
27 8 0.19
28 1 0.02
ACGTcount: A:0.38, C:0.27, G:0.11, T:0.25
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACATAGTAC
Found at i:78962878 original size:13 final size:13
Alignment explanation
Indices: 78962860--78962885 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
78962850 CCATAATATC
78962860 ACATTTAGCTTAA
1 ACATTTAGCTTAA
78962873 ACATTTAGCTTAA
1 ACATTTAGCTTAA
78962886 TAATTAGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
ACATTTAGCTTAA
Found at i:78966743 original size:21 final size:21
Alignment explanation
Indices: 78966719--78966761 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
78966709 ATAAAATTAA
78966719 AAAAGAA-AAACGAATCAATTC
1 AAAAGAATAAA-GAATCAATTC
* *
78966740 AAAATAATAAAGAATCGATTC
1 AAAAGAATAAAGAATCAATTC
78966761 A
1 A
78966762 TTTTCAATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.60, C:0.12, G:0.09, T:0.19
Consensus pattern (21 bp):
AAAAGAATAAAGAATCAATTC
Found at i:78968291 original size:45 final size:45
Alignment explanation
Indices: 78968240--78968325 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
78968230 ATGTGATCTA
* *
78968240 AACTCATTGATTTGTGGTCTGAGTTCATGATATATGTGACATCCG
1 AACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACATCCG
*
78968285 AACTCATTTAGTTGTGGTCTAAGTTCATGATATATGTGACA
1 AACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACA
78968326 CATGTTTTGG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (45 bp):
AACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGACATCCG
Found at i:78973029 original size:68 final size:68
Alignment explanation
Indices: 78972957--78973132 Score: 175
Period size: 68 Copynumber: 2.6 Consensus size: 68
78972947 CATCATGTGT
** * *
78972957 ACAAGAGAGCTACGAGATACTATGTAGTAGCTAGGTCACATGTGTGATACG-G-GATGTATC-CC
1 ACAAGAGAGCTACGAGATA-TAAAT-GTAGCTAGGTCACATGTGTGATACGAGTGAAGGA-CACC
78973019 ATGTAG
63 ATGTAG
* * * *
78973025 ACAAGAGAGCTACGGGAGAGATAAATGTAGCTAGGTCGCATGTGTTATTCGAAGTGAAGGACACC
1 ACAAGAGAGCTAC--GAGATATAAATGTAGCTAGGTCACATGTGTGATACG-AGTGAAGGACACC
78973090 ATGTAG
63 ATGTAG
*
78973096 ACAAGAGAGCTACGAG--ATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGAGATATAAATGTAGCTAGGTCACATG
78973133 GGTGGTACTA
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
66 13 0.14
67 6 0.07
68 35 0.38
69 6 0.07
70 7 0.08
71 25 0.27
ACGTcount: A:0.34, C:0.15, G:0.29, T:0.22
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGATATAAATGTAGCTAGGTCACATGTGTGATACGAGTGAAGGACACCATG
TAG
Found at i:78977782 original size:68 final size:68
Alignment explanation
Indices: 78977615--78977852 Score: 238
Period size: 68 Copynumber: 3.5 Consensus size: 68
78977605 ATAGTGCAAA
* *
78977615 TATGGTCTTACA-ATGTATGAACTCATGTTTAATGTCTTGGCAA--ACTCGATATGTTGCCATAG
1 TATGGTCTTACACAT-TATGATCTCATGTTTAATGTCTT-G-AAGGACTCCATATGTTGCCATAG
*
78977677 CCTAGG
63 CCTAGC
* * * * *
78977683 TATGATCTTACACAATATGATCCCACGTTTAATGTCTTGAAGGACTCCATATATTGCCATAGCCT
1 TATGGTCTTACACATTATGATCTCATGTTTAATGTCTTGAAGGACTCCATATGTTGCCATAGCCT
78977748 AGC
66 AGC
* * * * *
78977751 TATGGTCTTACACATTATCATCTTATATTTAATCTCTT-AGAGGACTCCATATGTTGCCCT--CT
1 TATGGTCTTACACATTATGATCTCATGTTTAATGTCTTGA-AGGACTCCATATGTTGCCATAGC-
78977813 CTAGC
64 CTAGC
* * *
78977818 TATGGTCTTACACA-TATGAACCCAAGTTTAATGTC
1 TATGGTCTTACACATTATGATCTCATGTTTAATGTC
78977853 CTAGTAGACT
Statistics
Matches: 140, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
66 17 0.12
67 21 0.15
68 101 0.72
69 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (68 bp):
TATGGTCTTACACATTATGATCTCATGTTTAATGTCTTGAAGGACTCCATATGTTGCCATAGCCT
AGC
Found at i:78986690 original size:555 final size:555
Alignment explanation
Indices: 78985639--78986733 Score: 1541
Period size: 555 Copynumber: 2.0 Consensus size: 555
78985629 TTTTTTTTGC
* **
78985639 ACTTTAGGCTAACCTATAATTCCTATATCACACTGATCTTTCCTATTTCACTCTGTTTTTACAAA
1 ACTTTAGGCTAACCTATAATTCCTATATCACACTGATCTTTCCAATTTCACTCTACTTTTACAAA
* * * * ** * *
78985704 ATCCGCCGTGATGTATCTACTTAACCCTCCATACGTATGGTTAGACATCTATAGCCATGTAATTC
66 ATCCACCGTGATGTATCTACTTAACCCTCAATACATATGGTAAGACATAAATAACCATGCAATTC
78985769 AAGACCAAAGAAAGAGGGAAAATACAAATTAACATTTCTAGCTCAAGTTTTGAAATAAGGTTCAT
131 AAGACCAAAGAAAGAGGGAAAATACAAATTAACATTTCTAGCTCAAGTTTTGAAATAAGGTTCAT
* * * * * *
78985834 TAAGAAGTGTTTATAGGCTCAAAATAGGTACTAAGGGTGGATAAGTATAGGTCAGCTTTTTGGCT
196 CAAGAAGTGTTTACAGGCTCAAAATAGGTACTAAGGGTGAATAAATACAAGTCAGCTTTTTGGCT
* * * *
78985899 CTGGATATGTTCCAAACAATGCCTTAGGCCATCTCTAAATATCTCAATATGCACAAATTTAATCA
261 CTGGATATGTTCCAAACAATGCATTAAGCCATCCCTAAATATCTCAATATGCACAAATTTAAGCA
* * *
78985964 ACCAAACAAACTCAAATTCAACCATTTATCCTTCATTCTAGCATTCTCACTTCCTTGTATTTTCT
326 ACCAAACAAACTCAAATTCAACCATTTATCATTCATACTAGCATGCTCACTTCCTTGTATTTTCT
** * * *
78986029 ATATCATTTGGTACAGTTGATTGTTTAATGCCTATTTATAATGTAATGTGAAGAACTTAGTAGTT
391 ATATCATTCAGTACAGTTGATTGCTTAATGCCTATTTACAATGTAATGTGAAGAACTTAGTAGTC
* *
78986094 TAATAATCAAAAATTTAAAATCACCTATCATCATACCAAATTTATTTGTAAACACAAACAATCTA
456 TAATAATCAAAAATTTAAAATCACATATCATCATACCAAATTTATTTGTAAACACAAACAACCTA
78986159 CGCACATGCTCCTAACCAATTTTTCTTTGATTTAA
521 CGCACATGCTCCTAACCAATTTTTCTTTGATTTAA
** *
78986194 ACTTTAGGCTAACCTATGGTTCCTATATCAC-CTTGATTTTTCCAATTTCACTCTACTTTTACAA
1 ACTTTAGGCTAACCTATAATTCCTATATCACAC-TGATCTTTCCAATTTCACTCTACTTTTACAA
* * * * * *
78986258 AATCTATCGTGATGTATCTACTTAACCTTCAATACATATGGTCAAG-CGTAAATAATCGTGCAAT
65 AATCCACCGTGATGTATCTACTTAACCCTCAATACATATGGT-AAGACATAAATAACCATGCAAT
* * * * *** *
78986322 TC-AGAACCAAAGAAAGAGTGCAAATACAAATTAACGTTTCTGGCTTGGGTTTTGTAATAAGGTT
129 TCAAG-ACCAAAGAAAGAGGGAAAATACAAATTAACATTTCTAGCTCAAGTTTTGAAATAAGGTT
*
78986386 CATCAAGAAGTGTTTACAGGCTCAAAATAGGTACTAAGGGTGAATAAATACAAGTCAGGTTTTTG
193 CATCAAGAAGTGTTTACAGGCTCAAAATAGGTACTAAGGGTGAATAAATACAAGTCAGCTTTTTG
* * * ** *
78986451 GCTCTGGATGTGTTTCAAATAATGCATTAATTCATCCCTAGATATCTCAATATGCACAAATTTAA
258 GCTCTGGATATGTTCCAAACAATGCATTAAGCCATCCCTAAATATCTCAATATGCACAAATTTAA
**
78986516 GCAACCAAACAAACTCAAATTCAACCATTTATCATTCATACTAGCATGCTCGTTTCCTTGTATTT
323 GCAACCAAACAAACTCAAATTCAACCATTTATCATTCATACTAGCATGCTCACTTCCTTGTATTT
*
78986581 TCTATATCATTCAGTACAGTTGATTGCTTAATGCCTATTTACAGTGTAATGT-ATAGAACTTAGT
388 TCTATATCATTCAGTACAGTTGATTGCTTAATGCCTATTTACAATGTAATGTGA-AGAACTTAGT
* * * *
78986645 AGTCTAGTAATCAAAGATTTAAAATCACATATCATGATGCCAAATTTATTTGTAAACACAAACAA
452 AGTCTAATAATCAAAAATTTAAAATCACATATCATCATACCAAATTTATTTGTAAACACAAACAA
* * *
78986710 CCTATGTACATGCTCCTAGCCAAT
517 CCTACGCACATGCTCCTAACCAAT
78986734 CACTTCTATT
Statistics
Matches: 471, Mismatches: 65, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
554 4 0.01
555 465 0.99
556 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (555 bp):
ACTTTAGGCTAACCTATAATTCCTATATCACACTGATCTTTCCAATTTCACTCTACTTTTACAAA
ATCCACCGTGATGTATCTACTTAACCCTCAATACATATGGTAAGACATAAATAACCATGCAATTC
AAGACCAAAGAAAGAGGGAAAATACAAATTAACATTTCTAGCTCAAGTTTTGAAATAAGGTTCAT
CAAGAAGTGTTTACAGGCTCAAAATAGGTACTAAGGGTGAATAAATACAAGTCAGCTTTTTGGCT
CTGGATATGTTCCAAACAATGCATTAAGCCATCCCTAAATATCTCAATATGCACAAATTTAAGCA
ACCAAACAAACTCAAATTCAACCATTTATCATTCATACTAGCATGCTCACTTCCTTGTATTTTCT
ATATCATTCAGTACAGTTGATTGCTTAATGCCTATTTACAATGTAATGTGAAGAACTTAGTAGTC
TAATAATCAAAAATTTAAAATCACATATCATCATACCAAATTTATTTGTAAACACAAACAACCTA
CGCACATGCTCCTAACCAATTTTTCTTTGATTTAA
Found at i:78990272 original size:41 final size:41
Alignment explanation
Indices: 78990187--78990331 Score: 233
Period size: 40 Copynumber: 3.6 Consensus size: 41
78990177 TACTCGCTTT
**
78990187 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAGTTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
78990227 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
78990268 CAAATGCCTTCGGGACCTTAG-CCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATTAGTAACTCGCA
*
78990308 CAAATGCCTTCGGGATTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
78990332 TTATCATCCG
Statistics
Matches: 99, Mismatches: 3, Indels: 6
0.92 0.03 0.06
Matches are distributed among these distances:
39 4 0.04
40 60 0.61
41 30 0.30
42 5 0.05
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
Found at i:78996857 original size:26 final size:26
Alignment explanation
Indices: 78996828--78996879 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
78996818 TCGAACACGA
78996828 GGTATTTACGGACTTATTTCATTGAC
1 GGTATTTACGGACTTATTTCATTGAC
78996854 GGTATTTACGGACTTATTTCATTGAC
1 GGTATTTACGGACTTATTTCATTGAC
78996880 TTACACAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTATTTACGGACTTATTTCATTGAC
Found at i:78998212 original size:40 final size:40
Alignment explanation
Indices: 78998150--78998362 Score: 287
Period size: 40 Copynumber: 5.4 Consensus size: 40
78998140 AAACCAAGTA
* * *
78998150 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
78998189 CCTTCGGGACTTAGCCCGGATATAGT---TCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
78998226 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
78998266 CCTTTGGGACTTAGCCCGGA-ATTAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
78998306 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
78998346 CCTTCGAGACTTAGCCC
1 CCTTCGGGACTTAGCCC
78998363 CGTTATCATC
Statistics
Matches: 160, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
37 36 0.22
39 14 0.09
40 110 0.69
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:79000972 original size:25 final size:23
Alignment explanation
Indices: 79000944--79000999 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 23
79000934 AACTCCTCCT
79000944 GAGCTGATCAACAATAAACTCT-ATC
1 GAGCTGA--AACAATAAACTCTGA-C
*
79000969 GAGCTGGAAACAGTAAACTCTGAC
1 GAGCT-GAAACAATAAACTCTGAC
79000993 GAGCTGA
1 GAGCTGA
79001000 GAATAGTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
23 2 0.07
24 18 0.64
25 6 0.21
26 2 0.07
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (23 bp):
GAGCTGAAACAATAAACTCTGAC
Found at i:79000985 original size:24 final size:25
Alignment explanation
Indices: 79000953--79001023 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 25
79000943 TGAGCTGATC
*
79000953 AACAATAAACTCTATCGAGCTGGA-
1 AACAGTAAACTCTATCGAGCTGGAG
79000977 AACAGTAAACTCTGA-CGAGCT-GAG
1 AACAGTAAACTCT-ATCGAGCTGGAG
* *
79001001 AATAGTAAGCTCTTAT-GAGCTGG
1 AACAGTAAACTC-TATCGAGCTGG
79001024 CATATCAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
23 2 0.05
24 34 0.87
25 3 0.08
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.23
Consensus pattern (25 bp):
AACAGTAAACTCTATCGAGCTGGAG
Found at i:79006368 original size:40 final size:40
Alignment explanation
Indices: 79006306--79006509 Score: 331
Period size: 40 Copynumber: 5.1 Consensus size: 40
79006296 TGGATGATAA
** * *
79006306 CCGGGCTAAGTCCCGAAGGCATTTACGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
79006346 CCGGGCTAAGTCCCGGAA-GCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCC-GAAGGCATTTGTGCGAGTTACTATAT
79006386 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
79006426 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
79006466 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
79006506 CCGG
1 CCGG
79006510 TTAAATCCCA
Statistics
Matches: 155, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
39 4 0.03
40 148 0.95
41 3 0.02
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:79010173 original size:47 final size:47
Alignment explanation
Indices: 79010104--79010582 Score: 795
Period size: 47 Copynumber: 10.1 Consensus size: 47
79010094 TATGAAATGA
79010104 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
79010151 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
79010200 TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
79010246 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
79010295 TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
79010341 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
79010388 TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
79010434 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
*
79010481 TGAT-AGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATG
* * * * * * * *
79010529 TGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
79010576 TGATAAG
1 TGATAAG
79010583 TCCCAAAGGG
Statistics
Matches: 410, Mismatches: 12, Indels: 20
0.93 0.03 0.05
Matches are distributed among these distances:
46 103 0.25
47 177 0.43
48 79 0.19
49 51 0.12
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:79010272 original size:95 final size:95
Alignment explanation
Indices: 79010104--79010580 Score: 813
Period size: 95 Copynumber: 5.1 Consensus size: 95
79010094 TATGAAATGA
79010104 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 TGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
79010169 GATGTGATGAATGTGAAAGTGTATATATATG
65 GATGTGATGAATGTGAAAGTGTATATATATG
79010200 TGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 TGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
79010265 ATGTGATGAATGTGAAAGTGTATATATATG
66 ATGTGATGAATGTGAAAGTGTATATATATG
79010295 TGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 TGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
79010360 ATGTGATGAATGTGAAAGTG--TATATATG
66 ATGTGATGAATGTGAAAGTGTATATATATG
79010388 TGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 TGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
79010453 ATGTGATGAATGTGAAAGTG--TATATATG
66 ATGTGATGAATGTGAAAGTGTATATATATG
* * * * *
79010481 TGATAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGC
1 TGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGC
* * *
79010546 CAACGTGATGGATGTGAAAGTGTATA-A-ATG
64 CGATGTGATGAATGTGAAAGTGTATATATATG
79010576 TGATA
1 TGATA
79010581 AGTCCCAAAG
Statistics
Matches: 369, Mismatches: 8, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
93 138 0.37
95 224 0.61
96 5 0.01
97 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (95 bp):
TGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATATG
Found at i:79010757 original size:37 final size:37
Alignment explanation
Indices: 79010701--79010779 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
79010691 CCGAGCTCTA
* * * *
79010701 AAGACCTGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
79010738 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
79010775 AAGAC
1 AAGAC
79010780 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:79016416 original size:68 final size:67
Alignment explanation
Indices: 79016329--79016591 Score: 325
Period size: 68 Copynumber: 3.9 Consensus size: 67
79016319 TTTCTAGCAC
* * *
79016329 CATAGCCCAACTATGGTCTTACA-ATGTATGAACCCATGTTTAATGTTTTGGTAGACTCCATATG
1 CATAGCCTAGCTATGGTCTTACACAT-TATGAACCCATGTTTAATGTCTTGG-AGACTCCATATG
79016393 TT-T
64 TTGT
* * *
79016396 CCATAGCCTAAG-TATGGTCTTACACAGTATGAACCCATGTTTAATGTCCTGGCGAACTCCATAT
1 -CATAGCCT-AGCTATGGTCTTACACATTATGAACCCATGTTTAATGTCTTGGAG-ACTCCATAT
79016460 GTTGT
63 GTTGT
* * *
79016465 CATAGCCTAGCTATGGTCTTACACATTATAAACTCATGTTTAATGTCTTGGAGGACTTCATATGT
1 CATAGCCTAGCTATGGTCTTACACATTATGAACCCATGTTTAATGTCTTGGA-GACTCCATATGT
79016530 TGT
65 TGT
* * * *
79016533 CATATCCTAGCTATGATCTTACACATTATGAATCCATGTTTAATGACTTGGTAGACTCC
1 CATAGCCTAGCTATGGTCTTACACATTATGAACCCATGTTTAATGTCTTGG-AGACTCC
79016592 TGATTTCGAG
Statistics
Matches: 169, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
67 3 0.02
68 161 0.95
69 5 0.03
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.36
Consensus pattern (67 bp):
CATAGCCTAGCTATGGTCTTACACATTATGAACCCATGTTTAATGTCTTGGAGACTCCATATGTT
GT
Found at i:79017776 original size:22 final size:23
Alignment explanation
Indices: 79017736--79017781 Score: 85
Period size: 22 Copynumber: 2.0 Consensus size: 23
79017726 CTCACTGAAA
79017736 AGTGAGTTTCATTTTTTTTTGTC
1 AGTGAGTTTCATTTTTTTTTGTC
79017759 AGTGAGTTTCA-TTTTTTTTGTC
1 AGTGAGTTTCATTTTTTTTTGTC
79017781 A
1 A
79017782 ATTAGTATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.15, C:0.09, G:0.17, T:0.59
Consensus pattern (23 bp):
AGTGAGTTTCATTTTTTTTTGTC
Found at i:79018230 original size:17 final size:18
Alignment explanation
Indices: 79018208--79018243 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
79018198 ACATTTATAT
*
79018208 TTTTTTTA-TTAATTTGA
1 TTTTTTTAGTTAAGTTGA
79018225 TTTTTTTAGTTAAGTTGA
1 TTTTTTTAGTTAAGTTGA
79018243 T
1 T
79018244 ATTATACCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.67
Consensus pattern (18 bp):
TTTTTTTAGTTAAGTTGA
Found at i:79022142 original size:11 final size:11
Alignment explanation
Indices: 79022126--79022153 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
79022116 ATGTCGAAAC
79022126 TCTGGGAATAT
1 TCTGGGAATAT
79022137 TCTGGGAATAT
1 TCTGGGAATAT
79022148 TCTGGG
1 TCTGGG
79022154 CGGGGCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.11, G:0.32, T:0.36
Consensus pattern (11 bp):
TCTGGGAATAT
Found at i:79023076 original size:3 final size:3
Alignment explanation
Indices: 79023068--79023096 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
79023058 TGTTTTCTAG
79023068 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
79023097 CTTTCTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:79023112 original size:11 final size:11
Alignment explanation
Indices: 79023098--79023129 Score: 57
Period size: 10 Copynumber: 3.0 Consensus size: 11
79023088 TTCTTCTTCC
79023098 TTTCTTTTTTT
1 TTTCTTTTTTT
79023109 TTTC-TTTTTT
1 TTTCTTTTTTT
79023119 TTTCTTTTTTT
1 TTTCTTTTTTT
79023130 GCGGGTATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:79036009 original size:49 final size:49
Alignment explanation
Indices: 79035930--79036062 Score: 135
Period size: 49 Copynumber: 2.7 Consensus size: 49
79035920 TGGGTTAAGA
* ** * *
79035930 TGCCGATGCCATGTAGCAGACATGGTCTTACACTGGCTTTCATATAGCGAG
1 TGCCGATGTCATGTCCCAAACA-GGTCTTACACTGGCTCTCATATAGCG-G
* * * *
79035981 -GCCGATG-CTATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCGG
1 TGCCGATGTC-ATGTCCCAAACAGGTCTTACACTGGCTCTCATATAGCGG
*
79036029 TGTCGATGTCATGTCCCAAACAGGTCTTACACTG
1 TGCCGATGTCATGTCCCAAACAGGTCTTACACTG
79036063 ACACACGACA
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
48 1 0.01
49 52 0.74
50 17 0.24
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (49 bp):
TGCCGATGTCATGTCCCAAACAGGTCTTACACTGGCTCTCATATAGCGG
Found at i:79037316 original size:46 final size:46
Alignment explanation
Indices: 79037248--79037384 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
79037238 TATATATACA
* * * * *
79037248 CATCTCAAACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
79037294 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
79037340 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
79037385 ATACATGTTC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:79037422 original size:47 final size:47
Alignment explanation
Indices: 79037358--79037646 Score: 380
Period size: 47 Copynumber: 6.1 Consensus size: 47
79037348 ACACATTTCG
* *
79037358 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* * *
79037405 CATTGGCCATTCTGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
79037452 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
79037499 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
79037546 CATTGGCCATTCGGCCTTATCCCGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT----CACATATATACATGTTCACATTCATCA
* * ** *
79037597 CATTTGCCATTCGGCCTTATCTCATATATACACATTCGCATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
79037644 CAT
1 CAT
79037647 AAAATCCTAA
Statistics
Matches: 218, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
47 177 0.81
51 41 0.19
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:79037647 original size:25 final size:25
Alignment explanation
Indices: 79037573--79037647 Score: 59
Period size: 25 Copynumber: 3.1 Consensus size: 25
79037563 TATCCCGCAT
** *
79037573 ATATATACAGGTTCACATTCATCAC
1 ATATATACACATTCGCATTCATCAC
* * *
79037598 AT-T-TGC-CATTCGGCCTT-ATCTC
1 ATATATACACATTC-GCATTCATCAC
79037620 ATATATACACATTCGCATTCATCAC
1 ATATATACACATTCGCATTCATCAC
79037645 ATA
1 ATA
79037648 AAATCCTAAA
Statistics
Matches: 36, Mismatches: 9, Indels: 10
0.65 0.16 0.18
Matches are distributed among these distances:
22 9 0.25
23 6 0.17
24 7 0.19
25 14 0.39
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (25 bp):
ATATATACACATTCGCATTCATCAC
Found at i:79041218 original size:57 final size:57
Alignment explanation
Indices: 79041127--79041258 Score: 153
Period size: 57 Copynumber: 2.3 Consensus size: 57
79041117 GAAACACACT
* *
79041127 TCGCATACACAGTGCC-C-ACTAACTGATTTCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACACAGTGCCTCAACT-ACTGATCTCGCACACATAGCGCTCGATTAAAGAAC
* * * **
79041183 TCGCACAC-CTAGTGCCTCAACTACTGATCTGGCACACATAGTGCTCGGTTGGAGAAC
1 TCGCACACAC-AGTGCCTCAACTACTGATCTCGCACACATAGCGCTCGATTAAAGAAC
*
79041240 TTGCACACACAGTGCCTCA
1 TCGCACACACAGTGCCTCA
79041259 TAATTCTAGC
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
55 1 0.02
56 13 0.20
57 46 0.72
58 4 0.06
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (57 bp):
TCGCACACACAGTGCCTCAACTACTGATCTCGCACACATAGCGCTCGATTAAAGAAC
Found at i:79041377 original size:39 final size:40
Alignment explanation
Indices: 79041290--79041615 Score: 581
Period size: 39 Copynumber: 8.3 Consensus size: 40
79041280 CGAGGTTTAA
*
79041290 CCCGGATATATAACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
79041330 CCCGGATATATCACTAGCACGAATGCTCTTC-GAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* *
79041369 CCCAGATATATAACTAGCACGAATGCTCTTC-GAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
79041408 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
79041448 CCC-GATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
79041487 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
79041527 CCCGGATATATCACTAGCACGAATGCTCTTCGG-ACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
79041566 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
79041606 -TCGGATATAT
1 CCCGGATATAT
79041616 AACTCTCAAT
Statistics
Matches: 277, Mismatches: 6, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
39 161 0.58
40 116 0.42
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (40 bp):
CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
Found at i:79041395 original size:79 final size:80
Alignment explanation
Indices: 79041290--79041619 Score: 589
Period size: 79 Copynumber: 4.2 Consensus size: 80
79041280 CGAGGTTTAA
79041290 CCCGGATATATAACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATG
1 CCCGGATATATAACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATG
79041355 CTCTTC-GAACTTAG
66 CTCTTCGGAACTTAG
*
79041369 CCCAGATATATAACTAGCACGAATGCTCTTC-GAACTTAGCCCGGATATATCACTAGCACGAATG
1 CCCGGATATATAACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATG
79041433 CTCTTCGGAACTTAG
66 CTCTTCGGAACTTAG
*
79041448 CCC-GATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATG
1 CCCGGATATATAACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATG
79041512 CTCTTCGGAACTTAG
66 CTCTTCGGAACTTAG
*
79041527 CCCGGATATATCACTAGCACGAATGCTCTTCGG-ACTTAGCCCGGATATATCACTAGCACGAATG
1 CCCGGATATATAACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATG
79041591 CTCTTCGGAACTTAG
66 CTCTTCGGAACTTAG
*
79041606 -TCGGATATATAACT
1 CCCGGATATATAACT
79041620 CTCAATTCTC
Statistics
Matches: 244, Mismatches: 4, Indels: 7
0.96 0.02 0.03
Matches are distributed among these distances:
78 77 0.32
79 138 0.57
80 29 0.12
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (80 bp):
CCCGGATATATAACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATG
CTCTTCGGAACTTAG
Found at i:79043100 original size:46 final size:46
Alignment explanation
Indices: 79043047--79043183 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
79043037 TATATATACA
* * * *
79043047 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
79043093 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
79043139 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
79043184 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:79043212 original size:92 final size:95
Alignment explanation
Indices: 79043111--79043490 Score: 399
Period size: 94 Copynumber: 4.0 Consensus size: 95
79043101 ACACGTTTCG
* * * * *
79043111 CATTAGCCATTCGGCTTTACCTCATATCTAT-CTCA-TACACATT-TCGCATTAGCCATTCGGCC
1 CATTGGCCATTCGGCCTTACCTCATA-CTATACTCAGTTCACATTATCACATTGGCCATTCGGCC
* * *
79043173 TTACCACATATATACATGTTCACATTCATCA
65 TTATCACACATACACATGTTCACATTCATCA
* *
79043204 CATT-GCCATTC-GCCTTATCTCATA-TAT--GCATGTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTACCTCATACTATACTCA-GTTCACATT-ATCACATTGGCCATTCGGC
*
79043264 CTTATCACACATACGCATGTTCACATTCATCA
64 CTTATCACACATACACATGTTCACATTCATCA
*
79043296 CATTGGCCATTCGGCCTTA--TCATAC-ATACGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTACCTCATACTATACTCA-GTTCACATT-ATCACATTGGCCATTCGGC
*
79043358 CTTATCACACATACGCATGTTCACATTCATCA
64 CTTATCACACATACACATGTTCACATTCATCA
* *
79043390 CATTGGCCATTCGGCCTTATCCCGCATA-TATA-TACAGGTTCACATTCATCACATTTGCCATTC
1 CATTGGCCATTCGGCCTTA--CCTCATACTATACT-CA-GTTCACATT-ATCACATTGGCCATTC
* * * **
79043453 GGCCTTATCTCATATATACACATTCACATTCATCA
61 GGCCTTATCACACATACACATGTTCACATTCATCA
79043488 CAT
1 CAT
79043491 AAAATCCTAA
Statistics
Matches: 252, Mismatches: 20, Indels: 25
0.85 0.07 0.08
Matches are distributed among these distances:
88 2 0.01
89 3 0.01
90 7 0.03
91 11 0.04
92 62 0.25
93 11 0.04
94 90 0.36
98 66 0.26
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (95 bp):
CATTGGCCATTCGGCCTTACCTCATACTATACTCAGTTCACATTATCACATTGGCCATTCGGCCT
TATCACACATACACATGTTCACATTCATCA
Found at i:79043284 original size:47 final size:47
Alignment explanation
Indices: 79043157--79043490 Score: 447
Period size: 47 Copynumber: 7.1 Consensus size: 47
79043147 ACACATTTCG
* * *
79043157 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
79043204 CATT-GCCATTC-GCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
79043249 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
79043296 CATTGGCCATTCGGCCTTATCATACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
79043343 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
79043390 CATTGGCCATTCGGCCTTATCCCGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT----CACATATATGCATGTTCACATTCATCA
* * * **
79043441 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
79043488 CAT
1 CAT
79043491 AAAATCCTAA
Statistics
Matches: 263, Mismatches: 18, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
45 35 0.13
46 14 0.05
47 173 0.66
51 41 0.16
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:79047067 original size:57 final size:57
Alignment explanation
Indices: 79046976--79047107 Score: 153
Period size: 57 Copynumber: 2.3 Consensus size: 57
79046966 GAAACACACT
* *
79046976 TCGCATACACAGTGCC-C-ACTAACTGATTTCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACACAGTGCCTCAACT-ACTGATCTCGCACACATAGCGCTCGATTAAAGAAC
* * * **
79047032 TCGCACAC-CTAGTGCCTCAACTACTGATCTGGCACACATAGTGCTCGGTTGGAGAAC
1 TCGCACACAC-AGTGCCTCAACTACTGATCTCGCACACATAGCGCTCGATTAAAGAAC
*
79047089 TTGCACACACAGTGCCTCA
1 TCGCACACACAGTGCCTCA
79047108 TAATTCTAGC
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
55 1 0.02
56 13 0.20
57 46 0.72
58 4 0.06
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (57 bp):
TCGCACACACAGTGCCTCAACTACTGATCTCGCACACATAGCGCTCGATTAAAGAAC
Found at i:79047179 original size:23 final size:23
Alignment explanation
Indices: 79047153--79047219 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
79047143 GATATATAAC
79047153 TAGCACGAATGCTCTTCGGAACT
1 TAGCACGAATGCTCTTCGGAACT
* * * *
79047176 TAGCCCGGAT-AT-ATC---AC-
1 TAGCACGAATGCTCTTCGGAACT
79047193 TAGCACGAATGCTCTTCGGAACT
1 TAGCACGAATGCTCTTCGGAACT
79047216 TAGC
1 TAGC
79047220 CCAGATATAT
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 8 0.27
18 3 0.10
19 2 0.07
21 2 0.07
22 3 0.10
23 12 0.40
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGAACT
Found at i:79047183 original size:40 final size:40
Alignment explanation
Indices: 79047139--79047469 Score: 599
Period size: 40 Copynumber: 8.3 Consensus size: 40
79047129 CGAGGTTTAA
*
79047139 CCCGGATATATAACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
79047179 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
* *
79047219 CCCAGATATATAACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
79047259 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
79047299 CCCGAATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
79047339 CCCGGATATATCACTAGCATGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
79047379 CCCAGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
79047419 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
79047459 TCCGGATATAT
1 CCCGGATATAT
79047470 AACTCTCAAT
Statistics
Matches: 279, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 279 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (40 bp):
CCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
Found at i:79047259 original size:23 final size:23
Alignment explanation
Indices: 79047233--79047339 Score: 67
Period size: 23 Copynumber: 5.2 Consensus size: 23
79047223 GATATATAAC
79047233 TAGCACGAATGCTCTTCGGAACT
1 TAGCACGAATGCTCTTCGGAACT
* * * *
79047256 TAGCCCGGAT-AT-ATC---AC-
1 TAGCACGAATGCTCTTCGGAACT
79047273 TAGCACGAATGCTCTTCGGAACT
1 TAGCACGAATGCTCTTCGGAACT
* * *
79047296 TAGCCCGAAT-AT-ATC---AC-
1 TAGCACGAATGCTCTTCGGAACT
79047313 TAGCACGAATGCTCTTCGGAACT
1 TAGCACGAATGCTCTTCGGAACT
79047336 TAGC
1 TAGC
79047340 CCGGATATAT
Statistics
Matches: 58, Mismatches: 14, Indels: 24
0.60 0.15 0.25
Matches are distributed among these distances:
17 17 0.29
18 6 0.10
19 4 0.07
21 4 0.07
22 6 0.10
23 21 0.36
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGAACT
Found at i:79048958 original size:46 final size:46
Alignment explanation
Indices: 79048905--79049041 Score: 195
Period size: 46 Copynumber: 3.0 Consensus size: 46
79048895 TATATATACA
* * * *
79048905 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
79048951 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
79048997 TATCTCATACACATTTCGCATTAGCCATTCGGAC-TTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGG-CTTTACCACATAT
79049042 ATACATGTTC
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 80 0.99
47 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:79049088 original size:47 final size:47
Alignment explanation
Indices: 79049015--79049350 Score: 411
Period size: 47 Copynumber: 7.1 Consensus size: 47
79049005 ACACATTTCG
* * *
79049015 CATTAGCCATTCGGACTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* * * *
79049062 CATTAGCCATTCAGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
79049109 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* * **
79049156 CATTGGCCATTCGGCCTTATCATACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
79049203 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
79049250 CATTGGCCATTCGGCCTTATCCCGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT----CACATATATACATGTTCACATTCATCA
* * ** * *
79049301 CATTTGCCATTCGGCCTTATCTCATATATACACATTCGCATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
79049348 CAT
1 CAT
79049351 AAAATCCTAA
Statistics
Matches: 261, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
47 220 0.84
51 41 0.16
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:79056911 original size:106 final size:105
Alignment explanation
Indices: 79056735--79057327 Score: 643
Period size: 106 Copynumber: 5.6 Consensus size: 105
79056725 AGAGTTGTGT
* * * * * * * * * * *
79056735 TCTTAAAGCAGCAAATTCAAATAAACTTAGGTTGTGATTTTAAATCAGCTAACCTTTATCACATT
1 TCTTAAATCAGCTAACTCAAAGAAACTTAGGTTGCGATATTAAATTAACTAACCTTTATAATATC
79056800 AGCTGTGAACGAGGGTTAGTGAGCTATTTTAGGAGTTGCAA
66 AGCTGTGAACGA-GGTTAGTGAGCTATTTTAGGAGTTGCAA
* * *
79056841 TCTCAAATCAGCTAACTCAAAGAAACTTAGGTTGCGATCTTAAATCAACTAACCTTTATAATATC
1 TCTTAAATCAGCTAACTCAAAGAAACTTAGGTTGCGATATTAAATTAACTAACCTTTATAATATC
* * * * * * *
79056906 AGCTGTGAGCATAGGTCATTGAGCTATTTTAAGAGTTACGA
66 AGCTGTGAAC-GAGGTTAGTGAGCTATTTTAGGAGTTGCAA
* * * * *
79056947 TCTTAAATCAGCTAACTTAAAGAAGCTTAGGTTGCGATATCAAATTAGCTAACTTTTATAATATC
1 TCTTAAATCAGCTAACTCAAAGAAACTTAGGTTGCGATATTAAATTAACTAACCTTTATAATATC
* * * *
79057012 AGCTGTGAATGTAGGTTAGCGAGATGTTTTAGGAGTTGCAA
66 AGCTGTGAACG-AGGTTAGTGAGCTATTTTAGGAGTTGCAA
* * * * *
79057053 TCTCAAATCAGCTAACTCAAAGAAACTTAGGTTGTGGTCTTAAATAAACTAACCTTTATAATATC
1 TCTTAAATCAGCTAACTCAAAGAAACTTAGGTTGCGATATTAAATTAACTAACCTTTATAATATC
* * * *
79057118 AACTGTAAATGTAGGTTATTGAGCTATTTTAGGAGTTGCAA
66 AGCTGTGAACG-AGGTTAGTGAGCTATTTTAGGAGTTGCAA
* *
79057159 TCTTAAATCAGCTAACTCAAAGAAACATAGGTTGTGATATTAAATTAACTAACCTTTATAATATC
1 TCTTAAATCAGCTAACTCAAAGAAACTTAGGTTGCGATATTAAATTAACTAACCTTTATAATATC
* * * * * *
79057224 AGCTGTGAA-TA--TAAGTCATCAAGTTGTTTAGGAGTTGCGA
66 AGCTGTGAACGAGGTTAGTGAGCTA--T-TTTAGGAGTTGCAA
* * * *
79057264 TCTTAAATCAACTAACTCAAAGAAACTTAGATTGCGATATTAAATTAGCTAACCTTTATCATAT
1 TCTTAAATCAGCTAACTCAAAGAAACTTAGGTTGCGATATTAAATTAACTAACCTTTATAATAT
79057328 TATCACTTGT
Statistics
Matches: 409, Mismatches: 73, Indels: 11
0.83 0.15 0.02
Matches are distributed among these distances:
102 6 0.01
104 2 0.00
105 71 0.17
106 329 0.80
107 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (105 bp):
TCTTAAATCAGCTAACTCAAAGAAACTTAGGTTGCGATATTAAATTAACTAACCTTTATAATATC
AGCTGTGAACGAGGTTAGTGAGCTATTTTAGGAGTTGCAA
Found at i:79057096 original size:212 final size:212
Alignment explanation
Indices: 79056735--79057327 Score: 749
Period size: 212 Copynumber: 2.8 Consensus size: 212
79056725 AGAGTTGTGT
* * * * * * * * *
79056735 TCTTAAAGCAGCAAATTCAAATAAACTTAGGTTGTGATTTTAAATCAGCTAACCTTTATCACATT
1 TCTTAAATCAGCTAACTCAAAGAAACTTAGGTTGTGATATTAAATTAGCTAACCTTTATAATATC
* * * *
79056800 AGCTGTGAACG-AGGGTTAGTGAGCTATTTTAGGAGTTGCAATCTCAAATCAGCTAACTCAAAGA
66 AGCTGTGAATGTA-GGTTAGCGAGATGTTTTAGGAGTTGCAATCTCAAATCAGCTAACTCAAAGA
* * * *
79056864 AACTTAGGTTGCGATCTTAAATCAACTAACCTTTATAATATCAGCTGTGAGCATAGGTCATTGAG
130 AACTTAGGTTGCGATCTTAAATAAACTAACCTTTATAATATCAACTGTAAACATAGGTCATTGAG
*
79056929 CTATTTTAAGAGTTACGA
195 CTATTTTAAGAGTTACAA
* * * * *
79056947 TCTTAAATCAGCTAACTTAAAGAAGCTTAGGTTGCGATATCAAATTAGCTAACTTTTATAATATC
1 TCTTAAATCAGCTAACTCAAAGAAACTTAGGTTGTGATATTAAATTAGCTAACCTTTATAATATC
79057012 AGCTGTGAATGTAGGTTAGCGAGATGTTTTAGGAGTTGCAATCTCAAATCAGCTAACTCAAAGAA
66 AGCTGTGAATGTAGGTTAGCGAGATGTTTTAGGAGTTGCAATCTCAAATCAGCTAACTCAAAGAA
* * ** *
79057077 ACTTAGGTTGTGGTCTTAAATAAACTAACCTTTATAATATCAACTGTAAATGTAGGTTATTGAGC
131 ACTTAGGTTGCGATCTTAAATAAACTAACCTTTATAATATCAACTGTAAACATAGGTCATTGAGC
* *
79057142 TATTTTAGGAGTTGCAA
196 TATTTTAAGAGTTACAA
* *
79057159 TCTTAAATCAGCTAACTCAAAGAAACATAGGTTGTGATATTAAATTAACTAACCTTTATAATATC
1 TCTTAAATCAGCTAACTCAAAGAAACTTAGGTTGTGATATTAAATTAGCTAACCTTTATAATATC
* * * * * * * * *
79057224 AGCTGTGAATATAAGTCATCAAGTTG-TTTAGGAGTTGCGATCTTAAATCAACTAACTCAAAGAA
66 AGCTGTGAATGTAGGTTAGCGAGATGTTTTAGGAGTTGCAATCTCAAATCAGCTAACTCAAAGAA
* * * * *
79057288 ACTTAGATTGCGATATTAAATTAGCTAACCTTTATCATAT
131 ACTTAGGTTGCGATCTTAAATAAACTAACCTTTATAATAT
79057328 TATCACTTGT
Statistics
Matches: 327, Mismatches: 53, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
211 68 0.21
212 258 0.79
213 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (212 bp):
TCTTAAATCAGCTAACTCAAAGAAACTTAGGTTGTGATATTAAATTAGCTAACCTTTATAATATC
AGCTGTGAATGTAGGTTAGCGAGATGTTTTAGGAGTTGCAATCTCAAATCAGCTAACTCAAAGAA
ACTTAGGTTGCGATCTTAAATAAACTAACCTTTATAATATCAACTGTAAACATAGGTCATTGAGC
TATTTTAAGAGTTACAA
Found at i:79072130 original size:40 final size:40
Alignment explanation
Indices: 79072047--79072273 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
79072037 TTCTAACACG
* * * * * *
79072047 AGCCTACGGGTCTTT-AACCCAGATTCCATTCTAGTACGA-
1 AGCCTGCGGGTCTTTAAACCCGGATACAATTCTAGCA-TAT
* *
79072086 AGCCTACGGGTCTTTAAACCCGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAACCCGGATACAATTCTAGCATAT
*
79072126 AGCCTGCGGGTCTTTAAACCCGGATACAACTCTAGCATAT
1 AGCCTGCGGGTCTTTAAACCCGGATACAATTCTAGCATAT
*
79072166 AGCCTGCGGGTCTTTAAACCTGGATACAATTCTAGCATAT
1 AGCCTGCGGGTCTTTAAACCCGGATACAATTCTAGCATAT
* * * * *
79072206 AGCCTGCGGGTCTTTAAACCCAGATACCATTCCATCACGA-
1 AGCCTGCGGGTCTTTAAACCCGGATACAATTCTAGCA-TAT
*
79072246 AGCCTGCGGGTCTTTAAGCCCGGATACA
1 AGCCTGCGGGTCTTTAAACCCGGATACA
79072274 CACATCAAAT
Statistics
Matches: 165, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
39 16 0.10
40 148 0.90
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAACCCGGATACAATTCTAGCATAT
Found at i:79080513 original size:54 final size:54
Alignment explanation
Indices: 79080427--79080560 Score: 223
Period size: 54 Copynumber: 2.5 Consensus size: 54
79080417 ATCTTATGGT
* * *
79080427 GGGATTATCAGTCTAGGCTAAATCCCCGATTTTATGAACTCATAAGGTGATGTC
1 GGGATTACCAGTCCAGGCTAAATCCCCCATTTTATGAACTCATAAGGTGATGTC
79080481 GGGATTACCAGTCCAGGCTAAATCCCCCATTTTATGAACTCATAAGGTGATGTC
1 GGGATTACCAGTCCAGGCTAAATCCCCCATTTTATGAACTCATAAGGTGATGTC
* *
79080535 AGGACTACCAGTCCAGGCTAAATCCC
1 GGGATTACCAGTCCAGGCTAAATCCC
79080561 TTATAACGAC
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 75 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (54 bp):
GGGATTACCAGTCCAGGCTAAATCCCCCATTTTATGAACTCATAAGGTGATGTC
Found at i:79102962 original size:21 final size:22
Alignment explanation
Indices: 79102936--79102976 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
79102926 CTCTTAACAC
79102936 AAGGGC-ACACGCCCATGTGGG
1 AAGGGCAACACGCCCATGTGGG
*
79102957 AAGGGCAACACGCCCGTGTG
1 AAGGGCAACACGCCCATGTG
79102977 ACAATTCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.24, C:0.29, G:0.37, T:0.10
Consensus pattern (22 bp):
AAGGGCAACACGCCCATGTGGG
Found at i:79107754 original size:55 final size:53
Alignment explanation
Indices: 79107644--79107887 Score: 219
Period size: 55 Copynumber: 4.6 Consensus size: 53
79107634 ATTAGGGTTT
* * * * *
79107644 AAGGATACCATGTATGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTGAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACAT-GACATTGGTAA-GTTTATAAGGC
* * *
79107699 AAGGATACCATGTAAGACCATGTCAAGACATGTCATTGATAAGTTATTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAG-T-TTATAAGGC
* * * * *
79107754 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTATAAGGC
* * * * *
79107807 AAGGATACCATGTAAGACCATGTCGAGACGTGGCAATGGTAAGTTT-TAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTATAAGGC
* * *
79107856 AAGGATACCACGTAAGACCATGACAAGTCATG
1 AAGGATACCATGTAAGACCATGCCAAGACATG
79107888 GAAATGGTAA
Statistics
Matches: 157, Mismatches: 28, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
49 27 0.17
52 7 0.04
53 42 0.27
54 10 0.06
55 67 0.43
56 4 0.03
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAAGTTTATAAGGC
Found at i:79107850 original size:108 final size:109
Alignment explanation
Indices: 79107651--79107900 Score: 293
Period size: 108 Copynumber: 2.4 Consensus size: 109
79107641 TTTAAGGATA
* *
79107651 CCATGTATGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTGAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* * *
79107716 CCATGTCAAGACATGTCATTGATAAGTTATTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTT-TTAAAAGGCAAAGGTC
* *
79107761 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* * * *
79107823 ACCATGTCGAGACGTGGCAATGGTAAGTTTTAAAAGG---A--TA
65 ACCATGTCAAGACATGGCAATGATAAGTTTTAAAAGGCAAAGGTC
* * *
79107863 CCACGTAAGACCATGACAAGTCATGGAAA-TGGTAAGGT
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGT
79107901 ACCCATGTAT
Statistics
Matches: 120, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
102 29 0.24
103 2 0.02
104 1 0.01
107 10 0.08
108 46 0.38
109 7 0.06
110 25 0.21
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTTTAAAAGGCAAAGGTC
Found at i:79108111 original size:16 final size:16
Alignment explanation
Indices: 79108090--79108120 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79108080 ATAAATTTGA
79108090 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
79108106 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
79108121 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:79124406 original size:40 final size:40
Alignment explanation
Indices: 79124301--79124491 Score: 224
Period size: 40 Copynumber: 4.8 Consensus size: 40
79124291 TGGATGATAA
* * * * * **
79124301 CCGGGCCAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
79124341 CCGGGC-AAGTCCCGACGGCAGTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
79124380 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
79124420 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* * *
79124460 CCGGGCTATGTCCCAAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
79124492 AGCTATGTCC
Statistics
Matches: 131, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 31 0.24
40 98 0.75
41 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:79128376 original size:48 final size:48
Alignment explanation
Indices: 79128206--79128471 Score: 171
Period size: 48 Copynumber: 5.6 Consensus size: 48
79128196 CACTGACTAT
* ** * *
79128206 CGATGCCATGTCCCAGACATGATCTTACACTGGCTTATCCATTAAGT--
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATCTA-TACGTGC
* * * * * *
79128253 CAATGCCATGTCCCAGACATGGTCTTACACTTGCTC-TCACACCTCCGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATC-TA--TACGTGC
* * * *
79128303 CGATACCATGTCCCAGATATAGTCTTACACTGGCACCTCTATACGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATCTATACGTGC
* * *
79128351 CGATGCCATGTCCTAGACATGGTCTTACACTGACACATCT-T--GTAAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATCTATACGT-GC
* * *
79128397 CGA-GGCATGTCCCAGGCAT-GTCTTACACTGGCTTACAT-TA-A-GAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC--ACATCTATACG-TGC
*
79128443 CGATG-CATGTCCTAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
79128472 AGCTCTTGTC
Statistics
Matches: 176, Mismatches: 31, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
44 12 0.07
45 16 0.09
46 37 0.21
47 36 0.20
48 42 0.24
50 31 0.18
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATCTATACGTGC
Found at i:79128463 original size:46 final size:45
Alignment explanation
Indices: 79128349--79128471 Score: 126
Period size: 46 Copynumber: 2.7 Consensus size: 45
79128339 CTCTATACGT
* *
79128349 GCCGATGCCATGTCCTAGACATGGTCTTACACTGAC--ACATCT-TGTA
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCTTACAT-TAAG-A
* * * *
79128395 ACCGAGGCATGTCCCAGGCATGTCTTACACTGGCTTACATTAAGA
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTTACATTAAGA
79128440 GGCCGATGCATGTCCTAGACATGTCTTACACT
1 -GCCGATGCATGTCCTAGACATGTCTTACACT
79128472 AGCTCTTGTC
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
44 12 0.19
45 14 0.22
46 37 0.59
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTGGCTTACATTAAGA
Found at i:79135135 original size:24 final size:24
Alignment explanation
Indices: 79135107--79135152 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
79135097 GAACTTCAAA
79135107 GATAGCTTCAAGGTTACGAGTTTC
1 GATAGCTTCAAGGTTACGAGTTTC
79135131 GATAGCTTCAAGGTTACGAGTT
1 GATAGCTTCAAGGTTACGAGTT
79135153 CCTAACTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (24 bp):
GATAGCTTCAAGGTTACGAGTTTC
Found at i:79142140 original size:39 final size:40
Alignment explanation
Indices: 79142042--79142224 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
79142032 GAATGATGTT
* * *
79142042 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TC
* *
79142082 TGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTC
* * *
79142122 CGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
* *
79142161 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TC
* *
79142201 CGGGCTATGTCCCAAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
79142225 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 35 0.29
40 74 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
Found at i:79142246 original size:79 final size:79
Alignment explanation
Indices: 79142093--79142257 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
79142083 GGACTAAGAT
* * ***
79142093 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
*
79142158 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
79142172 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-C
* *
79142235 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
79142251 CCGAAGG
1 CCGAAGG
79142258 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.67
80 22 0.30
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:79144910 original size:7 final size:7
Alignment explanation
Indices: 79144898--79144931 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
79144888 ACATTAATAA
79144898 TTTATTC
1 TTTATTC
79144905 TTTATTC
1 TTTATTC
79144912 TTTATTC
1 TTTATTC
79144919 TTTATTC
1 TTTATTC
79144926 TTTATT
1 TTTATT
79144932 TTTGATTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTATTC
Found at i:79149693 original size:28 final size:29
Alignment explanation
Indices: 79149661--79149759 Score: 107
Period size: 28 Copynumber: 3.5 Consensus size: 29
79149651 ATAATAAGCC
*
79149661 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
*
79149689 CGCACACTTAGTGC-TATATAATC-AACCT
1 CGCACACTTAGTGCTTACATAATCGAA-CT
* * *
79149717 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
79149746 CGCACACTTAGTGC
1 CGCACACTTAGTGC
79149760 CAATCTCATG
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
27 4 0.07
28 35 0.57
29 17 0.28
30 5 0.08
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:79159320 original size:4 final size:4
Alignment explanation
Indices: 79159313--79159337 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
79159303 TGTGTAAAAA
79159313 AAAG AAAG AAAG AAAG AAAG AAAG A
1 AAAG AAAG AAAG AAAG AAAG AAAG A
79159338 TGAAAGAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:79160582 original size:73 final size:73
Alignment explanation
Indices: 79160444--79160601 Score: 189
Period size: 73 Copynumber: 2.1 Consensus size: 73
79160434 AATGCCTTAG
79160444 TCTTTTTCCCAAAATCGGTTCCCCCACAGAAATCCCAAAATTTCACCTAAAATCTCTTGTTTTTT
1 TCTTTTTCCCAAAATCGGTTCCCCCACAGAAATCCCAAAA-TTCACCTAAAATCTCTTGTTTTTT
79160509 TTCCCC-TT
65 TTCCCCATT
* * * *
79160517 TCTTTTTCCCAAAATCGGTTCCCCC-CTCGAAATCTCAAAA-T-ACCTGAAATCTCTTCTTCTAT
1 TCTTTTTCCCAAAATCGGTTCCCCCAC-AGAAATCCCAAAATTCACCTAAAATCTCTT-GT-T-T
79160579 TTTTTCCCCATTT
62 TTTTTCCCCA-TT
*
79160592 TATTTTTCCC
1 TCTTTTTCCC
79160602 TAACCATTTC
Statistics
Matches: 74, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
70 13 0.18
71 2 0.03
72 2 0.03
73 46 0.62
75 11 0.15
ACGTcount: A:0.23, C:0.32, G:0.05, T:0.41
Consensus pattern (73 bp):
TCTTTTTCCCAAAATCGGTTCCCCCACAGAAATCCCAAAATTCACCTAAAATCTCTTGTTTTTTT
TCCCCATT
Found at i:79160682 original size:22 final size:22
Alignment explanation
Indices: 79160657--79160718 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 22
79160647 TTTCCCCAAA
*
79160657 TCGGTAGCCCTCTGCATCTTCG
1 TCGGTAGCCCTCTGCATCTCCG
* *
79160679 TCGGCAACCCATTGCTGCATCTCCG
1 TCGGTAGCCC--T-CTGCATCTCCG
79160704 TCGGTAGCCCTCTGC
1 TCGGTAGCCCTCTGC
79160719 TGCTTCTCCT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
22 12 0.38
23 1 0.03
24 1 0.03
25 18 0.56
ACGTcount: A:0.11, C:0.39, G:0.23, T:0.27
Consensus pattern (22 bp):
TCGGTAGCCCTCTGCATCTCCG
Found at i:79160719 original size:25 final size:25
Alignment explanation
Indices: 79160657--79160727 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 25
79160647 TTTCCCCAAA
*
79160657 TCGGTAG-CC-CT-CTGCATCTTCG
1 TCGGTAGCCCTCTGCTGCATCTCCG
* *
79160679 TCGGCAACCCAT-TGCTGCATCTCCG
1 TCGGTAGCCC-TCTGCTGCATCTCCG
*
79160704 TCGGTAGCCCTCTGCTGCTTCTCC
1 TCGGTAGCCCTCTGCTGCATCTCC
79160728 TTGTAAGTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
22 5 0.13
23 2 0.05
24 2 0.05
25 29 0.76
ACGTcount: A:0.10, C:0.39, G:0.21, T:0.30
Consensus pattern (25 bp):
TCGGTAGCCCTCTGCTGCATCTCCG
Found at i:79163803 original size:16 final size:16
Alignment explanation
Indices: 79163782--79163815 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
79163772 AAAGTGTGCA
79163782 TTCTATTAT-TATTTTG
1 TTCTATT-TGTATTTTG
79163798 TTCTATTTGTATTTTG
1 TTCTATTTGTATTTTG
79163814 TT
1 TT
79163816 AGATTTAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 1 0.06
16 16 0.94
ACGTcount: A:0.15, C:0.06, G:0.09, T:0.71
Consensus pattern (16 bp):
TTCTATTTGTATTTTG
Found at i:79163905 original size:26 final size:22
Alignment explanation
Indices: 79163842--79163890 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
79163832 ATGATAAGTG
*
79163842 TGATATTTTGTTTGATTGTTAT
1 TGATCTTTTGTTTGATTGTTAT
79163864 TGATCTTTTGTTTGATTGTTAT
1 TGATCTTTTGTTTGATTGTTAT
79163886 TGATC
1 TGATC
79163891 AACTTTCTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.16, C:0.04, G:0.18, T:0.61
Consensus pattern (22 bp):
TGATCTTTTGTTTGATTGTTAT
Found at i:79164333 original size:43 final size:43
Alignment explanation
Indices: 79164260--79164343 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
79164250 TTTTATTTTT
* *
79164260 CATGACCTTTAGCGGAATTTTTGAGAAAAGCGCCGCTAAAGAA
1 CATGACCTTTAGCGGAATTTGTGAGAAAAGCGCCACTAAAGAA
** * *
79164303 CATGACCTTTAGCGGCGTTTGTGGGGAAAGCGCCACTAAAG
1 CATGACCTTTAGCGGAATTTGTGAGAAAAGCGCCACTAAAG
79164344 GTCATGTTCC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (43 bp):
CATGACCTTTAGCGGAATTTGTGAGAAAAGCGCCACTAAAGAA
Found at i:79171042 original size:56 final size:57
Alignment explanation
Indices: 79170959--79171070 Score: 156
Period size: 56 Copynumber: 2.0 Consensus size: 57
79170949 GAAATGGTGA
*
79170959 AAAATGAGAAATAGGAAACATTTGGAAATGATTATGGTTTTCTCAAAAACGAAAATT
1 AAAATGAGAAATAGGAAACATTTGGAAATGAATATGGTTTTCTCAAAAACGAAAATT
* * * *
79171016 AAAATAGAGAAAT-GGAATCA-TTGGAAATGAATGTGGTTTTCTCCAAAATGAAAAT
1 AAAAT-GAGAAATAGGAAACATTTGGAAATGAATATGGTTTTCTCAAAAACGAAAAT
79171071 GACTTGAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
56 31 0.63
57 11 0.22
58 7 0.14
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.28
Consensus pattern (57 bp):
AAAATGAGAAATAGGAAACATTTGGAAATGAATATGGTTTTCTCAAAAACGAAAATT
Found at i:79173741 original size:19 final size:20
Alignment explanation
Indices: 79173719--79173794 Score: 81
Period size: 19 Copynumber: 4.0 Consensus size: 20
79173709 ATTATAGTAG
79173719 ATTAATA-CATAATATGTTA
1 ATTAATATCATAATATGTTA
* *
79173738 ATTATTATCATTATA-G-TA
1 ATTAATATCATAATATGTTA
79173756 GATTAATA-CATAATATGTTA
1 -ATTAATATCATAATATGTTA
*
79173776 ATTATTATCAT-ATATGTTA
1 ATTAATATCATAATATGTTA
79173795 TTGTTTATTA
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
18 8 0.17
19 28 0.60
20 11 0.23
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.46
Consensus pattern (20 bp):
ATTAATATCATAATATGTTA
Found at i:79173760 original size:38 final size:38
Alignment explanation
Indices: 79173709--79173786 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
79173699 ATCACATACT
79173709 ATTATAGTAGATTAATACATAATATGTTAATTATTATC
1 ATTATAGTAGATTAATACATAATATGTTAATTATTATC
79173747 ATTATAGTAGATTAATACATAATATGTTAATTATTATC
1 ATTATAGTAGATTAATACATAATATGTTAATTATTATC
79173785 AT
1 AT
79173787 ATATGTTATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (38 bp):
ATTATAGTAGATTAATACATAATATGTTAATTATTATC
Found at i:79173902 original size:22 final size:19
Alignment explanation
Indices: 79173877--79173925 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 19
79173867 TATTATATTG
79173877 TATAATATTATTTCATATAGTA
1 TATAATATTA-TT-A-ATAGTA
79173899 TATAATA-TATTAATAGTA
1 TATAATATTATTAATAGTA
79173917 TATATATAT
1 TATA-ATAT
79173926 ACATCAATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 10 0.40
19 4 0.16
20 2 0.08
21 2 0.08
22 7 0.28
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (19 bp):
TATAATATTATTAATAGTA
Found at i:79177239 original size:27 final size:27
Alignment explanation
Indices: 79177207--79177263 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
79177197 ATACAACAAC
79177207 AATGAAGTAGCCGTAATCTACCAACAT
1 AATGAAGTAGCCGTAATCTACCAACAT
79177234 AATGAAGTAGCCGTAATCTACCAACAT
1 AATGAAGTAGCCGTAATCTACCAACAT
79177261 AAT
1 AAT
79177264 TAATCTTTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (27 bp):
AATGAAGTAGCCGTAATCTACCAACAT
Found at i:79177592 original size:6 final size:6
Alignment explanation
Indices: 79177575--79177612 Score: 67
Period size: 6 Copynumber: 6.2 Consensus size: 6
79177565 GACTAGCTCC
79177575 CACTTGG CACTTG CACTTG CACTTG CACTTG CACTTG C
1 CACTT-G CACTTG CACTTG CACTTG CACTTG CACTTG C
79177613 CCCTTTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.16, C:0.34, G:0.18, T:0.32
Consensus pattern (6 bp):
CACTTG
Found at i:79179138 original size:3 final size:3
Alignment explanation
Indices: 79179130--79179177 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
79179120 TTATGCAAAG
79179130 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
79179178 GGAGGAGGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:79181006 original size:42 final size:43
Alignment explanation
Indices: 79180855--79181039 Score: 178
Period size: 42 Copynumber: 4.3 Consensus size: 43
79180845 TTTTCGAAAA
* * * * *
79180855 AAACACAGCTAAAGACCATGACCTTTAGCGGCGCTTTT-TCGC
1 AAACACCGCTAAAAACCATAACCTTTAGCGGCACTTTTCTCAC
* ** * *
79180897 AAACGCCGCTAAAAACCA-AGAATTTTAGCGGCGCTTTTCTCGC
1 AAACACCGCTAAAAACCATA-ACCTTTAGCGGCACTTTTCTCAC
* ** *
79180940 AAACGCCGCTAATGACCATGACCTTTAGCGGCACTTTT-TCAC
1 AAACACCGCTAAAAACCATAACCTTTAGCGGCACTTTTCTCAC
* * * *
79180982 AAACACTGCTAAAAATCATAACCTTTAACGACACTTTTCTCAC
1 AAACACCGCTAAAAACCATAACCTTTAGCGGCACTTTTCTCAC
79181025 AAACACCGCTAAAAA
1 AAACACCGCTAAAAA
79181040 TAATAATCTT
Statistics
Matches: 117, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
42 64 0.55
43 53 0.45
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.24
Consensus pattern (43 bp):
AAACACCGCTAAAAACCATAACCTTTAGCGGCACTTTTCTCAC
Found at i:79181019 original size:85 final size:85
Alignment explanation
Indices: 79180855--79181037 Score: 224
Period size: 85 Copynumber: 2.2 Consensus size: 85
79180845 TTTTCGAAAA
* * * * *
79180855 AAACACAGCTAAAGACCATGACCTTTAGCGGCGCTTTTTCGCAAACGCCGCTAAAAACCAAGAAT
1 AAACACCGCTAAAGACCATGACCTTTAGCGGCACTTTTTCACAAACACCGCTAAAAACCAAGAAC
* * * *
79180920 TTTAGCGGCGCTTTTCTCGC
66 TTTAACGACACTTTTCTCAC
* * * * *
79180940 AAACGCCGCTAATGACCATGACCTTTAGCGGCACTTTTTCACAAACACTGCTAAAAATCATA-AC
1 AAACACCGCTAAAGACCATGACCTTTAGCGGCACTTTTTCACAAACACCGCTAAAAACCA-AGAA
79181004 CTTTAACGACACTTTTCTCAC
65 CTTTAACGACACTTTTCTCAC
79181025 AAACACCGCTAAA
1 AAACACCGCTAAA
79181038 AATAATAATC
Statistics
Matches: 81, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
85 80 0.99
86 1 0.01
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (85 bp):
AAACACCGCTAAAGACCATGACCTTTAGCGGCACTTTTTCACAAACACCGCTAAAAACCAAGAAC
TTTAACGACACTTTTCTCAC
Found at i:79181100 original size:22 final size:23
Alignment explanation
Indices: 79181072--79181114 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
79181062 TTTAATTTAA
*
79181072 TTAAATAATAT-TTATTTTTATG
1 TTAAATAATATATTATGTTTATG
*
79181094 TTAAATATTATATTATGTTTA
1 TTAAATAATATATTATGTTTA
79181115 ATTTTTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (23 bp):
TTAAATAATATATTATGTTTATG
Found at i:79182437 original size:15 final size:16
Alignment explanation
Indices: 79182411--79182441 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
79182401 TGTTTCTTGC
79182411 TTTTAGATCATATATA
1 TTTTAGATCATATATA
79182427 TTTTA-ATCATATATA
1 TTTTAGATCATATATA
79182442 AGATAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (16 bp):
TTTTAGATCATATATA
Found at i:79185240 original size:9 final size:9
Alignment explanation
Indices: 79185214--79185240 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
79185204 ATTTCTAACA
79185214 TATTTTTTC
1 TATTTTTTC
79185223 TATTTTTTC
1 TATTTTTTC
79185232 TATTTTTTC
1 TATTTTTTC
79185241 CTTCAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (9 bp):
TATTTTTTC
Found at i:79185437 original size:21 final size:21
Alignment explanation
Indices: 79185413--79185456 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
79185403 TCATATTACT
*
79185413 TTTAAATAATTTTTAAAAAAA
1 TTTAAATAATATTTAAAAAAA
* *
79185434 TTTAAGTAATATTTAAAATAA
1 TTTAAATAATATTTAAAAAAA
79185455 TT
1 TT
79185457 AGATTAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
TTTAAATAATATTTAAAAAAA
Found at i:79185997 original size:14 final size:14
Alignment explanation
Indices: 79185978--79186044 Score: 89
Period size: 14 Copynumber: 4.7 Consensus size: 14
79185968 CCAGAAAAGT
79185978 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
79185992 AAATCATTTTTCAAG
1 AAATCA-TTTTCCAG
* *
79186007 AAATTATTTTCCAT
1 AAATCATTTTCCAG
79186021 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
79186035 AAAACATTTT
1 AAATCATTTT
79186045 ACCTGCAAAC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
14 33 0.73
15 12 0.27
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.40
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:79186255 original size:21 final size:22
Alignment explanation
Indices: 79186216--79186261 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
79186206 CATAACCCCT
*
79186216 AACCCCTAACACCTAAACCTTA
1 AACCCCTAACACCTAAACCATA
79186238 AACCCC-AAC-CCTTAAACCATA
1 AACCCCTAACACC-TAAACCATA
79186259 AAC
1 AAC
79186262 TGTAAACCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 2 0.09
21 14 0.64
22 6 0.27
ACGTcount: A:0.43, C:0.41, G:0.00, T:0.15
Consensus pattern (22 bp):
AACCCCTAACACCTAAACCATA
Found at i:79186260 original size:7 final size:7
Alignment explanation
Indices: 79186165--79186310 Score: 53
Period size: 7 Copynumber: 20.6 Consensus size: 7
79186155 TTTTATCCCC
*
79186165 TAAACCC
1 TAAACCA
*
79186172 TAAATCA
1 TAAACCA
79186179 TACAA-CA
1 TA-AACCA
* *
79186186 TAACCCT
1 TAAACCA
79186193 TAAATCCA
1 TAAA-CCA
*
79186201 TAACCCA
1 TAAACCA
* *
79186208 TAACCCC
1 TAAACCA
* *
79186215 TAACCCC
1 TAAACCA
79186222 TAACACC-
1 TAA-ACCA
*
79186229 TAAACCT
1 TAAACCA
*
79186236 TAAACCC
1 TAAACCA
* * *
79186243 CAACCCT
1 TAAACCA
79186250 TAAACCA
1 TAAACCA
**
79186257 TAAACTG
1 TAAACCA
79186264 TAAACCA
1 TAAACCA
*
79186271 TAATCCA
1 TAAACCA
79186278 TAAACCCA
1 TAAA-CCA
**
79186286 TAATTCA
1 TAAACCA
*
79186293 TAATCCA
1 TAAACCA
*
79186300 TAAACCT
1 TAAACCA
79186307 TAAA
1 TAAA
79186311 ATAGTAACTC
Statistics
Matches: 106, Mismatches: 27, Indels: 12
0.73 0.19 0.08
Matches are distributed among these distances:
6 4 0.04
7 87 0.82
8 15 0.14
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.21
Consensus pattern (7 bp):
TAAACCA
Done.