Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 242 of 325
Found at i:79186619 original size:24 final size:24
Alignment explanation
Indices: 79186592--79186640 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
79186582 TTAAAATAAC
*
79186592 AATTAATTTTTATATAGACTTTTA
1 AATTAATTTTTATATAAACTTTTA
79186616 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
79186640 A
1 A
79186641 TAAATATACG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.53
Consensus pattern (24 bp):
AATTAATTTTTATATAAACTTTTA
Found at i:79187312 original size:41 final size:41
Alignment explanation
Indices: 79187255--79187425 Score: 220
Period size: 41 Copynumber: 4.4 Consensus size: 41
79187245 AGTTATATGA
79187255 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
79187296 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCT-A----CTG-
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* *
79187331 ----TAGCGGCGTTTTACCAAAAGCGCCGCTAAAGCTCTAT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* *
79187368 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCAGT
1 CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
*
79187409 -TTTTAGCGGCATTTTAC
1 CTTTTAGCGGCGTTTTAC
79187426 TATTGCTATG
Statistics
Matches: 114, Mismatches: 6, Indels: 21
0.81 0.04 0.15
Matches are distributed among these distances:
31 27 0.24
32 1 0.01
36 5 0.04
40 17 0.15
41 64 0.56
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (41 bp):
CTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
Found at i:79187338 original size:31 final size:31
Alignment explanation
Indices: 79187300--79187358 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
79187290 CTCTGTCTTT
79187300 TAGCGGCGTTTTACCAAAAGCGCCGCTACTG
1 TAGCGGCGTTTTACCAAAAGCGCCGCTACTG
79187331 TAGCGGCGTTTTACCAAAAGCGCCGCTA
1 TAGCGGCGTTTTACCAAAAGCGCCGCTA
79187359 AAGCTCTATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (31 bp):
TAGCGGCGTTTTACCAAAAGCGCCGCTACTG
Found at i:79187345 original size:72 final size:72
Alignment explanation
Indices: 79187259--79187399 Score: 264
Period size: 72 Copynumber: 2.0 Consensus size: 72
79187249 ATATGACTTT
* *
79187259 TAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTCTTTTAGCGGCGTTTTACCAAAAGCGCC
1 TAGCGGCGTTTTACCAAAAGCGCCGCTAAAGCTCTATCTTTTAGCGGCGTTTTACCAAAAGCGCC
79187324 GCTACTG
66 GCTACTG
79187331 TAGCGGCGTTTTACCAAAAGCGCCGCTAAAGCTCTATCTTTTAGCGGCGTTTTACCAAAAGCGCC
1 TAGCGGCGTTTTACCAAAAGCGCCGCTAAAGCTCTATCTTTTAGCGGCGTTTTACCAAAAGCGCC
79187396 GCTA
66 GCTA
79187400 TTGCTCAGTT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (72 bp):
TAGCGGCGTTTTACCAAAAGCGCCGCTAAAGCTCTATCTTTTAGCGGCGTTTTACCAAAAGCGCC
GCTACTG
Found at i:79187544 original size:3 final size:3
Alignment explanation
Indices: 79187527--79187683 Score: 70
Period size: 3 Copynumber: 51.3 Consensus size: 3
79187517 TATTACCATG
* *
79187527 ATA ATA ATTA A-A ATA ATA ATA ATA A-A ATA ATA AAA ATA ACA AT-
1 ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
79187570 ATG TTT CTA ATA ATA ATAA ATAA ATAA ATA ATG GTA ATAA ATA TATA
1 ATA ATA ATA ATA ATA AT-A AT-A AT-A ATA ATA ATA AT-A ATA -ATA
* * * * *
79187617 TATA ATA ATA GTA ACA GTA ACA GTA ATA A-A ATA ATA ATA ATA ATA
1 -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
79187662 ATA TTA ACA ATA TTA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA A
79187684 CACTCTCCCC
Statistics
Matches: 115, Mismatches: 31, Indels: 16
0.71 0.19 0.10
Matches are distributed among these distances:
2 8 0.07
3 83 0.72
4 24 0.21
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:79187545 original size:15 final size:14
Alignment explanation
Indices: 79187527--79187570 Score: 61
Period size: 14 Copynumber: 3.0 Consensus size: 14
79187517 TATTACCATG
79187527 ATAATAATTAAAATA
1 ATAATAA-TAAAATA
79187542 ATAATAATAAAATA
1 ATAATAATAAAATA
*
79187556 ATAAAAATAACAATA
1 ATAATAATAA-AATA
79187571 TGTTTCTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 16 0.59
15 11 0.41
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (14 bp):
ATAATAATAAAATA
Found at i:79187670 original size:32 final size:32
Alignment explanation
Indices: 79187618--79187679 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
79187608 AAATATATAT
* *
79187618 ATAATAATAGTAACAGTAACAGTAATAAAATA
1 ATAATAATAATAACAGTAACAATAATAAAATA
* * *
79187650 ATAATAATAATAATATTAACAATATTAAAA
1 ATAATAATAATAACAGTAACAATAATAAAA
79187680 ATAACACTCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (32 bp):
ATAATAATAATAACAGTAACAATAATAAAATA
Found at i:79188117 original size:13 final size:13
Alignment explanation
Indices: 79188053--79188120 Score: 50
Period size: 13 Copynumber: 5.0 Consensus size: 13
79188043 GGTGATGGAA
*
79188053 TTAGTGAGGTGGT
1 TTAGTGGGGTGGT
79188066 TTAGT--GGTCGGT
1 TTAGTGGGGT-GGT
*
79188078 TTAGTAGGGTGTTGGAG
1 TTAGT-GGG-G-TGG-T
*
79188095 TTAGTAGGGTGGT
1 TTAGTGGGGTGGT
79188108 TTAGTGGGGTGGT
1 TTAGTGGGGTGGT
79188121 ATTTGGGTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
11 3 0.07
12 8 0.18
13 17 0.39
14 3 0.07
15 2 0.05
16 5 0.11
17 6 0.14
ACGTcount: A:0.13, C:0.01, G:0.47, T:0.38
Consensus pattern (13 bp):
TTAGTGGGGTGGT
Found at i:79188242 original size:17 final size:17
Alignment explanation
Indices: 79188206--79188254 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
79188196 TATATTATTT
79188206 AAAATAAAAAAATTACA
1 AAAATAAAAAAATTACA
* * *
79188223 AAAATTAAAAATTTATA
1 AAAATAAAAAAATTACA
*
79188240 AAATAGAAAAAAATT
1 AAA-ATAAAAAAATT
79188255 CTAAGAAGAG
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 17 0.68
18 8 0.32
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (17 bp):
AAAATAAAAAAATTACA
Found at i:79188944 original size:16 final size:16
Alignment explanation
Indices: 79188923--79188955 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
79188913 CGGAGTGAAA
79188923 TTAGGTAAAATTTATT
1 TTAGGTAAAATTTATT
79188939 TTAGGTAAAATTTATT
1 TTAGGTAAAATTTATT
79188955 T
1 T
79188956 GGAAAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (16 bp):
TTAGGTAAAATTTATT
Found at i:79189679 original size:230 final size:230
Alignment explanation
Indices: 79189271--79189701 Score: 665
Period size: 230 Copynumber: 1.9 Consensus size: 230
79189261 TTAAAAATGC
* * *
79189271 ATTAGTTAATGGACGAAAAATTAATGGAGTAGAATCAAACTCAATTTATTTGTAATAGTAATTAC
1 ATTAGTTAATGGACCAAAAATTAATGGACTAGAATCAAACTCAATTTATTTATAATAGTAATTAC
*
79189336 CGATAGATATGATAAAAAAAATTTGAAATAGATTGGTTTTCATTTGATCGGATTTGATAGAGTTG
66 CGATAGATATGATAAAAAAAA-TTGAAATAGATTGGTTTTCATTCGATCGGATTTGATAGAGTTG
* * *
79189401 GATTTCTTTTAAAAAAAATTAAGTTTGAGATGGGGGAAGTTATTTTTTTT-TAAATCAAGTCTAA
130 AATTTCTTTTAAAAAAAATTAAGTTTGAGATGGAGGAAGTTATTTTTTTTAAAAATCAAGTCTAA
79189465 ACCCGTTCTACCCGTTTGAAGTATTTACAAAATCTA
195 ACCCGTTCTACCCGTTTGAAGTATTTACAAAATCTA
*
79189501 ATTAGTTAATGGACCAACAAA-TAATGGACTAGAGTCAAACTCAATTTATTTATAATAGTAATTA
1 ATTAGTTAATGGACCAA-AAATTAATGGACTAGAATCAAACTCAATTTATTTATAATAGTAATTA
**
79189565 TTGATAGAGATATGATAAAAAAAA-TGAAATAGATTGGTTTTCATTCGATTC-GATTTGATAGAG
65 CCGAT--AGATATGATAAAAAAAATTGAAATAGATTGGTTTTCATTCGA-TCGGATTTGATAGAG
* *
79189628 TTGAATTTCTTTTTAAAAAAA-TAAGTTTGAGATGGAGGAAGTTATTTTTTTTTAAAAATCGAGT
127 TTGAATTTCTTTTAAAAAAAATTAAGTTTGAGATGGAGGAAGTTA-TTTTTTTTAAAAATCAAGT
79189692 CTAAACCCGT
191 CTAAACCCGT
79189702 GAAATATTTA
Statistics
Matches: 183, Mismatches: 12, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
229 22 0.12
230 121 0.66
231 23 0.13
232 17 0.09
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (230 bp):
ATTAGTTAATGGACCAAAAATTAATGGACTAGAATCAAACTCAATTTATTTATAATAGTAATTAC
CGATAGATATGATAAAAAAAATTGAAATAGATTGGTTTTCATTCGATCGGATTTGATAGAGTTGA
ATTTCTTTTAAAAAAAATTAAGTTTGAGATGGAGGAAGTTATTTTTTTTAAAAATCAAGTCTAAA
CCCGTTCTACCCGTTTGAAGTATTTACAAAATCTA
Found at i:79192225 original size:22 final size:21
Alignment explanation
Indices: 79192200--79192251 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
79192190 CAAATTTATG
*
79192200 GAAATGTTAGAATGGAA-GTTTA
1 GAAATGTT-GAAT-AAATGTTTA
79192222 GAAATAGTTGAATAAATGTTTA
1 GAAAT-GTTGAATAAATGTTTA
*
79192244 GACATGTT
1 GAAATGTT
79192252 TTTGGACTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 5 0.19
22 18 0.69
23 3 0.12
ACGTcount: A:0.40, C:0.02, G:0.23, T:0.35
Consensus pattern (21 bp):
GAAATGTTGAATAAATGTTTA
Found at i:79203485 original size:19 final size:19
Alignment explanation
Indices: 79203461--79203498 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
79203451 TCCTATTCCT
79203461 AGTGTCAATAATGTAAGCC
1 AGTGTCAATAATGTAAGCC
79203480 AGTGTCAATAATGTAAGCC
1 AGTGTCAATAATGTAAGCC
79203499 TCTAGCTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (19 bp):
AGTGTCAATAATGTAAGCC
Found at i:79203556 original size:17 final size:18
Alignment explanation
Indices: 79203534--79203567 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79203524 TAATTATCTA
79203534 ATTCAA-TGATTAATTTT
1 ATTCAATTGATTAATTTT
*
79203551 ATTCAATTGATTTATTT
1 ATTCAATTGATTAATTT
79203568 ATAACCCTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (18 bp):
ATTCAATTGATTAATTTT
Found at i:79206712 original size:50 final size:50
Alignment explanation
Indices: 79206654--79206791 Score: 206
Period size: 50 Copynumber: 2.8 Consensus size: 50
79206644 AATATGAGAT
* *
79206654 TCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCAATATGTGTG-A
1 TCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCAATATGTGTGAA
* **
79206703 TCCCATGTAAGACCATGTCTGGGATATGACATTGGCATTGATATGTGTGAA
1 T-CCATGTAAGACCATGTCTGGGATATGGCATTGGCATCAATATGTGTGAA
*
79206754 TCCATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 TCCATGTAAGACCATGTCTGGGATATGGCATTGGCATC
79206792 TTACTATGTG
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
49 1 0.01
50 76 0.96
51 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCAATATGTGTGAA
Found at i:79207643 original size:18 final size:18
Alignment explanation
Indices: 79207620--79207659 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
79207610 TTAAGGAAAG
79207620 AAACTGTACTATGCCGGT
1 AAACTGTACTATGCCGGT
*
79207638 AAACTGTACTATGTCGGT
1 AAACTGTACTATGCCGGT
79207656 AAAC
1 AAAC
79207660 AAAAAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (18 bp):
AAACTGTACTATGCCGGT
Found at i:79209606 original size:46 final size:45
Alignment explanation
Indices: 79209553--79209820 Score: 224
Period size: 46 Copynumber: 5.8 Consensus size: 45
79209543 TGATATGTGC
79209553 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGCGAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CACATTGCGAAA
* * * * *
79209599 ACCAGTGTAAGACATGTCTGGAACATGTATCGG--CTTTGAAACGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACATTG---CGAAA
* * *
79209645 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-C-TCGAGATATGTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACATTGCGA-A----A
* * *
79209693 GCTAGTGTAAGACATGTCTGGGACATGCATCGG--CTTTGAGATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACATTGCGA--A-A
* *
79209739 GCCAGTGTAAGACATGTCTGGGACATGCATCAGGCACATCGTGAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGCACATTGCGAAA
* *
79209785 GCTAGTGTAAGACCATGTCTGAGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
79209821 TTGATATGTG
Statistics
Matches: 184, Mismatches: 22, Indels: 31
0.78 0.09 0.13
Matches are distributed among these distances:
43 6 0.03
46 109 0.59
47 21 0.11
48 42 0.23
49 6 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACATTGCGAAA
Found at i:79209739 original size:94 final size:91
Alignment explanation
Indices: 79209553--79209822 Score: 321
Period size: 94 Copynumber: 2.9 Consensus size: 91
79209543 TGATATGTGC
79209553 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGCGAAAACCAGTGTAAGACATGTCT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGCG-AAACCAGTGTAAGACATGTCT
*
79209618 GGAACATGTATCGGCTTTGAAACGAGA
65 GGAACATGCATCGGCTTTGAAACGAGA
* * ** *
79209645 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATGTG-TGCTAGTGTAAGACATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACAT-TGCGAAACCAGTGTAAGACATG
* * *
79209709 TCTGGGACATGCATCGGCTTTGAGATGAGA
62 TCTGGAACATGCATCGGCTTTGAAACGAGA
* * *
79209739 GCCAGTGTAAGACATGTCTGGGACATGCATCAGG-CACATCGTGAAAGCTAGTGTAAGACCATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGCCACATTGCGAAA-CCAGTGTAAGA-CATGT
79209803 CT-GAGACATGGCATCGGCTT
63 CTGGA-ACAT-GCATCGGCTT
79209823 GATATGTGTC
Statistics
Matches: 154, Mismatches: 14, Indels: 18
0.83 0.08 0.10
Matches are distributed among these distances:
90 3 0.02
91 3 0.02
92 46 0.30
93 12 0.08
94 82 0.53
95 5 0.03
96 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (91 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGCGAAACCAGTGTAAGACATGTCTG
GAACATGCATCGGCTTTGAAACGAGA
Found at i:79209792 original size:140 final size:133
Alignment explanation
Indices: 79209544--79209854 Score: 317
Period size: 140 Copynumber: 2.2 Consensus size: 133
79209534 CAGTGCATGT
* *
79209544 GATATGTGCGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGCGAAAACCAGTGTAA
1 GATATGTGTG-CAGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTGAGAAAACCAGTGTAA
* * *
79209609 GACATGTCTGGAACATGTATCGGCTTTGAAACGAGAGCCAGTGTAAGA-CATGTCTGGGACAT-G
63 GACATGTCTGGAACATGCATCGGC--T-AAACGAAAGCCAGTGTAAGACCATGTCTGAGACATGG
79209672 CATCGGCCTCGA
125 CATCGG-CT--A
* *
79209684 GATATGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTTTGAGATGAGAGCCAGTGTA
1 GATATGTGTGC-AGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGA--A-AACCAGTGTA
* * *
79209748 AGACATGTCTGGGACATGCATCAGGC-ACATCGTGAAAGCTAGTGTAAGACCATGTCTGAGACAT
62 AGACATGTCTGGAACATGCATC-GGCTA-AAC--GAAAGCCAGTGTAAGACCATGTCTGAGACAT
*
79209812 GGCATCGGCTT
123 GGCATCGGCTA
* *
79209823 GATATGTGT-CAATGTAAGACCTGTCTGGGACA
1 GATATGTGTGCAGTGTAAGACATGTCTGGGACA
79209855 CGGCATCGAC
Statistics
Matches: 148, Mismatches: 13, Indels: 23
0.80 0.07 0.12
Matches are distributed among these distances:
137 27 0.18
138 3 0.02
139 11 0.07
140 82 0.55
141 18 0.12
142 7 0.05
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (133 bp):
GATATGTGTGCAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGAAAACCAGTGTAAGAC
ATGTCTGGAACATGCATCGGCTAAACGAAAGCCAGTGTAAGACCATGTCTGAGACATGGCATCGG
CTA
Found at i:79216351 original size:40 final size:40
Alignment explanation
Indices: 79216296--79216455 Score: 266
Period size: 40 Copynumber: 4.0 Consensus size: 40
79216286 TCGATATATT
*
79216296 ATGTATATCCGGGTCAAATCCCACAGGCTTCGTGCTGGTA
1 ATGTATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTA
*
79216336 ATGTATATCTGGGTCAAATCCCGCAGGCTTCGTGCTGGTA
1 ATGTATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTA
* *
79216376 ATGTATATCCGGGTTAAATTCCGCAGGCTTCGTGCTGGTA
1 ATGTATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTA
* *
79216416 ATGTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
1 ATGTATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTA
79216456 TTATATTCGG
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 113 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (40 bp):
ATGTATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTA
Found at i:79216435 original size:80 final size:79
Alignment explanation
Indices: 79216295--79216478 Score: 271
Period size: 80 Copynumber: 2.3 Consensus size: 79
79216285 CTCGATATAT
* * * *
79216295 TATGTATATCCGGGTCAAATCCCACAGGCTTCGTGCTGGTAATGTATATCTGGGTCAAATCCCGC
1 TATGTATATCCGGGTTAAATTCCGCAGGCTTCGTGCTGGTAATGTATATCCGGGTCAAATCCCGC
*
79216360 AGGCTTCGTGCTGG
66 AGGCTTAGTGCTGG
*
79216374 TAATGTATATCCGGGTTAAATTCCGCAGGCTTCGTGCTGGTAATGTATATCCGGGTTAAATCCCG
1 T-ATGTATATCCGGGTTAAATTCCGCAGGCTTCGTGCTGGTAATGTATATCCGGGTCAAATCCCG
79216439 CAGGCTTAGTGCTGG
65 CAGGCTTAGTGCTGG
*
79216454 TAT-TATATTCGGGCTTAAAGTTCCG
1 TATGTATATCCGGG-TTAAA-TTCCG
79216479 TAGACTTTGA
Statistics
Matches: 95, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
78 9 0.09
79 8 0.08
80 78 0.82
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (79 bp):
TATGTATATCCGGGTTAAATTCCGCAGGCTTCGTGCTGGTAATGTATATCCGGGTCAAATCCCGC
AGGCTTAGTGCTGG
Found at i:79226376 original size:27 final size:27
Alignment explanation
Indices: 79226346--79226674 Score: 380
Period size: 27 Copynumber: 12.2 Consensus size: 27
79226336 AAAGTACTCC
*
79226346 CGATTTACAGAATTTCCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
79226373 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
79226400 C-AGTTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
79226427 CGATTTACAGAATTATCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
79226454 C-AGGTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
**
79226481 TAATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
79226508 C-AGTTTACAGACTTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
79226535 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
79226562 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
79226589 TGATTTACAGAGTTACTAG-TTTAACCT
1 CGATTTACAGAATTAC-CGTTTTACCCT
* *
79226616 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
79226643 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
79226670 TGATT
1 CGATT
79226675 GTGAAATTAC
Statistics
Matches: 254, Mismatches: 38, Indels: 20
0.81 0.12 0.06
Matches are distributed among these distances:
26 5 0.02
27 244 0.96
28 5 0.02
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:79226743 original size:54 final size:54
Alignment explanation
Indices: 79226679--79226874 Score: 250
Period size: 54 Copynumber: 3.6 Consensus size: 54
79226669 TTGATTGTGA
* * * * * *
79226679 AATTACTGAAATACCCCTGTAGGGTAGAATTTCTGAACTATCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
79226733 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
*
79226787 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
79226841 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
79226875 ATTTTGCCCT
Statistics
Matches: 122, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 121 0.99
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:79226874 original size:27 final size:27
Alignment explanation
Indices: 79226679--79226874 Score: 223
Period size: 27 Copynumber: 7.3 Consensus size: 27
79226669 TTGATTGTGA
* *
79226679 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
79226706 AATTTCTGAACTATCCC-TATAGGGTAG
1 AATTACCGAAATA-CCCTTGTAGGGTAG
* * *
79226733 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
79226760 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
79226787 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
79226814 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
79226841 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
79226868 AATTACC
1 AATTACC
79226875 ATTTTGCCCT
Statistics
Matches: 145, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 3 0.02
27 139 0.96
28 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:79226884 original size:27 final size:27
Alignment explanation
Indices: 79226854--79226917 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
79226844 TACCGAGATA
*
79226854 CCCTTGTGGGGTAAAATTACCATTTTG
1 CCCTTGTGGGGTAAAATGACCATTTTG
* * **
79226881 CCCTTAG-GGTGTTAAATGACTGTTTTG
1 CCCTT-GTGGGGTAAAATGACCATTTTG
79226908 CCCTTGTGGG
1 CCCTTGTGGG
79226918 CAAGTGACTG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
26 1 0.03
27 27 0.93
28 1 0.03
ACGTcount: A:0.17, C:0.19, G:0.27, T:0.38
Consensus pattern (27 bp):
CCCTTGTGGGGTAAAATGACCATTTTG
Found at i:79227116 original size:27 final size:26
Alignment explanation
Indices: 79227077--79227155 Score: 113
Period size: 27 Copynumber: 3.0 Consensus size: 26
79227067 GGAAGCATTC
*
79227077 TGGTGGCTATGCCACAAATATCTGTTT
1 TGGTGGCTCTGCCAC-AATATCTGTTT
79227104 TGGTGGCTCTGCCACAATATCTGTATT
1 TGGTGGCTCTGCCACAATATCTGT-TT
* *
79227131 TGGTGACTCTGTCACAATATCTGTT
1 TGGTGGCTCTGCCACAATATCTGTT
79227156 GACCGATCGA
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
26 10 0.21
27 38 0.79
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATCTGTTT
Found at i:79227275 original size:22 final size:22
Alignment explanation
Indices: 79227243--79227301 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
79227233 CCCGTTATTA
*
79227243 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
79227265 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
79227287 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
79227302 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:79227488 original size:27 final size:27
Alignment explanation
Indices: 79227466--79227539 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
79227456 TAGGTGGGTT
*
79227466 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
79227493 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
79227520 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
79227540 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:79227666 original size:6 final size:6
Alignment explanation
Indices: 79227657--79227758 Score: 102
Period size: 6 Copynumber: 16.8 Consensus size: 6
79227647 TTGCATTCAC
* *
79227657 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
79227706 -TTACTA ATACTG ATTCTG ATTTTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
79227754 ATTCT
1 ATTCT
79227759 CATTTTGGTT
Statistics
Matches: 79, Mismatches: 10, Indels: 14
0.77 0.10 0.14
Matches are distributed among these distances:
5 5 0.06
6 68 0.86
7 5 0.06
8 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:79227779 original size:30 final size:30
Alignment explanation
Indices: 79227657--79227758 Score: 159
Period size: 30 Copynumber: 3.4 Consensus size: 30
79227647 TTGCATTCAC
*
79227657 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
*
79227688 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
79227718 ATTCTGATTTTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
79227748 ATTCTGATTCT
1 ATTCTGATTCT
79227759 CATTTTGGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
30 45 0.69
31 20 0.31
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:79230637 original size:42 final size:40
Alignment explanation
Indices: 79230590--79230675 Score: 111
Period size: 42 Copynumber: 2.1 Consensus size: 40
79230580 TTTGAGTAGA
*
79230590 TGTATTTGTAAT-AGGCCTTGGGCTTAGCAAGCTTTGAACTGG
1 TGTATTTGT-ATCAAGCCTTGGGCTTAGCAAGCTTTG-A-TGG
* *
79230632 TGTATTTGTATCAAGCCTTGGGCTTAGTAAGTTTTGATGG
1 TGTATTTGTATCAAGCCTTGGGCTTAGCAAGCTTTGATGG
79230672 TGTA
1 TGTA
79230676 AATGTTATAG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
40 7 0.17
41 3 0.08
42 30 0.75
ACGTcount: A:0.21, C:0.12, G:0.28, T:0.40
Consensus pattern (40 bp):
TGTATTTGTATCAAGCCTTGGGCTTAGCAAGCTTTGATGG
Found at i:79233452 original size:28 final size:28
Alignment explanation
Indices: 79233420--79233484 Score: 121
Period size: 28 Copynumber: 2.3 Consensus size: 28
79233410 ATGTACTAGA
79233420 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
79233448 ATACCCCTATGTATGCAAAATTACCGTT
1 ATACCCCTATGTATGCAAAATTACCATT
79233476 ATACCCCTA
1 ATACCCCTA
79233485 GGGTTAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:79233648 original size:27 final size:28
Alignment explanation
Indices: 79233590--79233679 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
79233580 AGGAAGCGTC
*
79233590 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* * *
79233618 CTGGTGGCCCTGGCAC-ATATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
79233645 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
79233674 CTGGTG
1 CTGGTG
79233680 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:79233698 original size:55 final size:56
Alignment explanation
Indices: 79233590--79233704 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
79233580 AGGAAGCGTC
* *
79233590 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGGCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGGCACATATATCTGTAT
* * *
79233645 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGGCACATATATCTGTAT
79233701 CTGG
1 CTGG
79233705 CCGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGGCACATATATCTGTAT
Found at i:79241058 original size:28 final size:28
Alignment explanation
Indices: 79241026--79241090 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
79241016 ATGTACTAGA
*
79241026 ATACCCTTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
79241054 ATACCCCTATGTATGCAAAATTACCGTT
1 ATACCCCTATGTATGCAAAATTACCATT
79241082 ATACCCCTA
1 ATACCCCTA
79241091 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:79241254 original size:27 final size:27
Alignment explanation
Indices: 79241196--79241285 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
79241186 AAGAAGCGTC
79241196 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
79241224 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
79241251 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
79241280 CTGGTG
1 CTGGTG
79241286 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:79247341 original size:22 final size:24
Alignment explanation
Indices: 79247299--79247351 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
79247289 ATTTTATTAT
*
79247299 TTAATATGAATATATATTTTAAGAA
1 TTAATATGAATATATAATTTAA-AA
79247324 -TAATAT-AA-ATATAATTTAAAA
1 TTAATATGAATATATAATTTAAAA
79247345 TTAATAT
1 TTAATAT
79247352 TGTATGATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 2 0.08
22 16 0.62
23 2 0.08
24 6 0.23
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAATATGAATATATAATTTAAAA
Found at i:79247440 original size:24 final size:28
Alignment explanation
Indices: 79247408--79247470 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
79247398 TTAATTTATG
79247408 TTTT-ATTGTTT-AT-TCT-AA-AAATA
1 TTTTAATTGTTTAATATCTAAACAAATA
*
79247431 TTTTAATTGTTTAATATTTAAACAAATA
1 TTTTAATTGTTTAATATCTAAACAAATA
*
79247459 TTTTAATGGTTT
1 TTTTAATTGTTT
79247471 TTTTCTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
23 4 0.12
24 7 0.21
25 2 0.06
26 2 0.06
27 2 0.06
28 16 0.48
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (28 bp):
TTTTAATTGTTTAATATCTAAACAAATA
Found at i:79260472 original size:42 final size:43
Alignment explanation
Indices: 79260315--79260473 Score: 177
Period size: 42 Copynumber: 3.7 Consensus size: 43
79260305 ATATGTGTTA
* *
79260315 TCGTGTAAGACCACGTTTGGGACGTTGGCATCGACT-TATGATTT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TT
* *
79260359 TTGTGTAAGACCACGTCTGGGATGTTGGCATC-ATATTTGATT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATT
79260401 TCGTGTAAGACTCTA--TCTGGGACAG-TGGCATCGATATTTGATT
1 TCGTGTAAGAC-C-ACGTCTGGGAC-GTTGGCATCGATATTTGATT
* *
79260444 ACATGTAAGACCACGTCT-GGACGTTGGCAT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCAT
79260474 TGTATGAGCT
Statistics
Matches: 99, Mismatches: 8, Indels: 18
0.79 0.06 0.14
Matches are distributed among these distances:
41 2 0.02
42 38 0.38
43 29 0.29
44 30 0.30
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (43 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATT
Found at i:79261706 original size:19 final size:19
Alignment explanation
Indices: 79261670--79261707 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
79261660 CCTCTCTAAC
*
79261670 TTTGAAAATTTATTTATGT
1 TTTGAAAATTTATGTATGT
79261689 TTTGAAAAATTT-TGTATGT
1 TTTG-AAAATTTATGTATGT
79261708 GTTCGGTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (19 bp):
TTTGAAAATTTATGTATGT
Found at i:79261799 original size:19 final size:19
Alignment explanation
Indices: 79261775--79261813 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
79261765 AAGGGACTCT
79261775 ATTAT-GATGTATGATTATG
1 ATTATGGATG-ATGATTATG
*
79261794 ATTATGGATGATGTTTATG
1 ATTATGGATGATGATTATG
79261813 A
1 A
79261814 ATTGTTCGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (19 bp):
ATTATGGATGATGATTATG
Found at i:79268002 original size:43 final size:42
Alignment explanation
Indices: 79267918--79268076 Score: 191
Period size: 43 Copynumber: 3.7 Consensus size: 42
79267908 ATATGTGTTA
79267918 TCATGTAA-ACCACGTCTGGGATGTTGGCATCG-ACTTATGATT
1 TCATGTAAGACCACGTCTGGGATGTTGGCATCGTA-TT-TGATT
*
79267960 TACATGTAAGACCACGTCTAGGATGTTGGCATCGTATTTGATT
1 T-CATGTAAGACCACGTCTGGGATGTTGGCATCGTATTTGATT
* *
79268003 TCATGTAAGACC-CTGTTTGGGACAG-TGGCATCGATATTTGATT
1 TCATGTAAGACCAC-GTCTGGGA-TGTTGGCATCG-TATTTGATT
* *
79268046 GCATGTAAGACCACTTCTGGGATGTTGGCAT
1 TCATGTAAGACCACGTCTGGGATGTTGGCAT
79268077 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 8, Indels: 15
0.81 0.06 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.27
43 46 0.46
44 26 0.26
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (42 bp):
TCATGTAAGACCACGTCTGGGATGTTGGCATCGTATTTGATT
Found at i:79271841 original size:38 final size:38
Alignment explanation
Indices: 79271783--79271929 Score: 152
Period size: 38 Copynumber: 3.9 Consensus size: 38
79271773 ATTAAACAAT
* *
79271783 GGCACGAA-GCATGCTAGGCACATAGCCCGATAACACT
1 GGCACGAAGGCTTGCTAGGCACATAGCCCGATAACACC
* **
79271820 GGCACGAAGGGTTGCTAGGCACATAGCTTGATAACACC
1 GGCACGAAGGCTTGCTAGGCACATAGCCCGATAACACC
* * * * *
79271858 GACACAAAGGCTTGTTAGGCATATAGCCTGATAACACC
1 GGCACGAAGGCTTGCTAGGCACATAGCCCGATAACACC
* * * * *
79271896 AGCATGAAGGCCTACTAGGCATATAGCCCGATAA
1 GGCACGAAGGCTTGCTAGGCACATAGCCCGATAA
79271930 TACCTTATAT
Statistics
Matches: 90, Mismatches: 19, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
37 8 0.09
38 82 0.91
ACGTcount: A:0.33, C:0.25, G:0.24, T:0.18
Consensus pattern (38 bp):
GGCACGAAGGCTTGCTAGGCACATAGCCCGATAACACC
Found at i:79277475 original size:10 final size:10
Alignment explanation
Indices: 79277460--79277502 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
79277450 GAACATGTTG
79277460 AATTTTAATT
1 AATTTTAATT
*
79277470 AATTTTATATCA
1 AATTTTA-AT-T
*
79277482 AATTTTGATT
1 AATTTTAATT
79277492 AATTTTAATT
1 AATTTTAATT
79277502 A
1 A
79277503 TTACAGATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
10 17 0.63
11 4 0.15
12 6 0.22
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (10 bp):
AATTTTAATT
Found at i:79290336 original size:24 final size:24
Alignment explanation
Indices: 79290304--79290350 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
79290294 GCCAATATAC
*
79290304 ATATATATAGCCGAAGCTATCTTA
1 ATATATATAGCCGAAGCCATCTTA
*
79290328 ATATATATAGCTGAAGCCATCTT
1 ATATATATAGCCGAAGCCATCTT
79290351 GATTTCGCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (24 bp):
ATATATATAGCCGAAGCCATCTTA
Found at i:79290809 original size:20 final size:21
Alignment explanation
Indices: 79290770--79290810 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
79290760 ACTTGTATAA
79290770 CTATCATGAAAAACTCAAAAT
1 CTATCATGAAAAACTCAAAAT
* *
79290791 CTATCATTAAACA-TCAAAAT
1 CTATCATGAAAAACTCAAAAT
79290811 AATCATGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.51, C:0.20, G:0.02, T:0.27
Consensus pattern (21 bp):
CTATCATGAAAAACTCAAAAT
Found at i:79294683 original size:3 final size:3
Alignment explanation
Indices: 79294675--79294971 Score: 211
Period size: 3 Copynumber: 100.7 Consensus size: 3
79294665 ATGAGAAATG
* * *
79294675 ATA ATA ATA CTA GTA ATA ATA ATA ATA ATA ATA A-A GGTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
* * * * * *
79294720 ATT ATT ATA ATA GAGA ATA ATA GTA ATA GTA AAA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
79294766 GTA ATA ATA ATA ATA AAA ATA ATA ATA ATA ATA AT- ATA ATA ATG ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
79294813 ATA ATA ATA ATA ATA GTA ATA AT- ATA A-A ATTA ATG AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA
* ** * *
79294856 AT- GTA ATA ATA ATA AGC A-A ATA AGT- ATA AAA AGA A-A AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA
* * * * * * *
79294897 ATC ATA ATA ATA TTT GTA GTA ATA ATA AGA ATA AGA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
79294945 ATGA AT- ATAA ATA ATA GTA AAA ATA AT
1 AT-A ATA AT-A ATA ATA ATA ATA ATA AT
79294972 GAAATTAACT
Statistics
Matches: 231, Mismatches: 46, Indels: 34
0.74 0.15 0.11
Matches are distributed among these distances:
2 18 0.08
3 202 0.87
4 11 0.05
ACGTcount: A:0.61, C:0.01, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:79295790 original size:22 final size:21
Alignment explanation
Indices: 79295761--79295803 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
79295751 TTCTTTGTTT
79295761 TTGAAA-TCCCTATTTTTTTTA
1 TTGAAACTCCCT-TTTTTTTTA
79295782 TTGATAATCTCCCTTTTTTTTT
1 TTGA-AA-CTCCCTTTTTTTTT
79295804 CTTCTTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.21
22 2 0.11
23 8 0.42
24 5 0.26
ACGTcount: A:0.19, C:0.16, G:0.05, T:0.60
Consensus pattern (21 bp):
TTGAAACTCCCTTTTTTTTTA
Found at i:79296065 original size:26 final size:25
Alignment explanation
Indices: 79296035--79296098 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 25
79296025 GTTTGAGCCA
79296035 TTTGGGCTAGGGTAGTTAGGTTT-AAT
1 TTTGGGCTAGGGT--TTAGGTTTCAAT
* *
79296061 TTTGGGCCTCGGGTTTGGGTTTCAAT
1 TTTGGG-CTAGGGTTTAGGTTTCAAT
79296087 TGTTGGGCTAGG
1 T-TTGGGCTAGG
79296099 CTGAATTGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
25 7 0.22
26 14 0.44
27 11 0.34
ACGTcount: A:0.12, C:0.09, G:0.38, T:0.41
Consensus pattern (25 bp):
TTTGGGCTAGGGTTTAGGTTTCAAT
Found at i:79296562 original size:44 final size:43
Alignment explanation
Indices: 79296512--79296888 Score: 132
Period size: 44 Copynumber: 8.5 Consensus size: 43
79296502 GTCTGCTTTG
79296512 CTGCAACTTCAGGGAGATAAGACTTGTGGTTTCAATCTGCTCCA
1 CTGCAACTTCAGGGAGATAAGA-TTGTGGTTTCAATCTGCTCCA
* * * *
79296556 CTGCAACTTCAAGGAGATAAGATTTTCCAAGG--T-AGATTTGGTCCGA
1 CTGCAACTTCAGGGAGATAAGATTGT----GGTTTCA-ATCTGCTCC-A
* * * * *
79296602 CCTACAACAAATTCAGAGG-TATAGGACTTGTCGCTTT-AATCCGCTCCA
1 -CTGCAAC---TTCAG-GGAGATAAGA-TTGT-GGTTTCAATCTGCTCCA
* * * * * * * *
79296650 TTGCAACTTCAAGGAGATAAGTTTAGTAGTCTCAATCTGTTTCG
1 CTGCAACTTCAGGGAGATAAGATT-GTGGTTTCAATCTGCTCCA
* * * *
79296694 CTGCAACTTCAGGGAGATAAGATTG-GTATCTTTAGTCTGTTCCA
1 CTGCAACTTCAGGGAGATAAGATTGTG-GT-TTCAATCTGCTCCA
** * *
79296738 CTGCAACTTCAGGGAGATAAGACTTGTAATTTCAA-CTTACTCTA
1 CTGCAACTTCAGGGAGATAAGA-TTGTGGTTTCAATC-TGCTCCA
* * * *
79296782 CT---ACTACAGAGAGATAATG-TTAGTGGCTGCAATCTGCTCCA
1 CTGCAACTTCAGGGAGATAA-GATT-GTGGTTTCAATCTGCTCCA
* * *
79296823 CTGCAACGTT-TGGGAAATAAGATCTGCT-GTCTTCAGTCTGCTCCA
1 CTGCAAC-TTCAGGGAGATAAGAT-TG-TGGT-TTCAATCTGCTCCA
* *
79296868 CTGTAACTTCAGAGAGATAAG
1 CTGCAACTTCAGGGAGATAAG
79296889 GTTGGTGGCT
Statistics
Matches: 237, Mismatches: 62, Indels: 67
0.65 0.17 0.18
Matches are distributed among these distances:
40 2 0.01
41 26 0.11
42 2 0.01
43 13 0.05
44 114 0.48
45 42 0.18
46 1 0.00
47 13 0.05
48 2 0.01
49 6 0.03
50 11 0.05
51 5 0.02
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (43 bp):
CTGCAACTTCAGGGAGATAAGATTGTGGTTTCAATCTGCTCCA
Found at i:79296758 original size:182 final size:183
Alignment explanation
Indices: 79296430--79296759 Score: 472
Period size: 182 Copynumber: 1.8 Consensus size: 183
79296420 CTACTGCAAC
* * *
79296430 TTCAAAGGTATAGGACTTGTAGCTTTAATCCGCTCCACTGCAATTTTAAGGAGATAGGATTAGCT
1 TTCAAAGGTATAGGACTTGTAGCTTTAATCCGCTCCACTGCAACTTCAAGGAGATAAGATTAGCT
* *
79296495 GTCTTCAGTCTGCTTTGCTGCAACTTCAGGGAGATAAGACTTGTGGTTTCAATCTGCTCCACTGC
66 GTCTTCAATCTGCTTTGCTGCAACTTCAGGGAGATAAGACTTGTGATTTCAATCTGCTCCACTGC
79296560 AACTTCAAGGAGATAAGATTTTCCAAGGTAGATTTGGTCCGACCTACAACAAA
131 AACTTCAAGGAGATAAGATTTTCCAAGGTAGATTTGGTCCGACCTACAACAAA
* * * *
79296613 TTCAGAGGTATAGGACTTGTCGCTTTAATCCGCTCCATTGCAACTTCAAGGAGATAAGTTTAG-T
1 TTCAAAGGTATAGGACTTGTAGCTTTAATCCGCTCCACTGCAACTTCAAGGAGATAAGATTAGCT
* * *
79296677 AGTC-TCAATCTG-TTTCGCTGCAACTTCAGGGAGATAAGA-TTG-GTATCTTTAGTCTGTTCCA
66 -GTCTTCAATCTGCTTT-GCTGCAACTTCAGGGAGATAAGACTTGTG-AT-TTCAATCTGCTCCA
*
79296738 CTGCAACTTCAGGGAGATAAGA
127 CTGCAACTTCAAGGAGATAAGA
79296760 CTTGTAATTT
Statistics
Matches: 130, Mismatches: 13, Indels: 9
0.86 0.09 0.06
Matches are distributed among these distances:
180 1 0.01
181 7 0.05
182 63 0.48
183 59 0.45
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (183 bp):
TTCAAAGGTATAGGACTTGTAGCTTTAATCCGCTCCACTGCAACTTCAAGGAGATAAGATTAGCT
GTCTTCAATCTGCTTTGCTGCAACTTCAGGGAGATAAGACTTGTGATTTCAATCTGCTCCACTGC
AACTTCAAGGAGATAAGATTTTCCAAGGTAGATTTGGTCCGACCTACAACAAA
Found at i:79297063 original size:44 final size:44
Alignment explanation
Indices: 79296998--79297243 Score: 176
Period size: 44 Copynumber: 5.5 Consensus size: 44
79296988 TCAGTCTACA
* **
79296998 CCCTTGTTACCTCAGGAAGATAAGACTACAATCTTCAGCCTGCT
1 CCCTTGCTACCTCAGGAAGATAAGACTACAATCTTCAATCTGCT
* * * **** **
79297042 CCCTTACTACCTCAGGGAGATAAGGCTAGTGGCTAAAATCTGCT
1 CCCTTGCTACCTCAGGAAGATAAGACTACAATCTTCAATCTGCT
* * * ** *
79297086 CCCCTGCTACCTCAGGAAGATACGA-TTCACCGCTTTCAATCTAC-
1 CCCTTGCTACCTCAGGAAGATAAGACTACA-ATC-TTCAATCTGCT
* * * *
79297130 CCCACTGCTATCTCGAGG-AGACAAGATCTACAAT-TATCAGTCTGCT
1 CCC-TTGCTACCTC-AGGAAGATAAGA-CTACAATCT-TCAATCTGCT
* *
79297176 CCCTTGCTACTTCAGGAAGATAAGACTACAATCTTCAACCTGCT
1 CCCTTGCTACCTCAGGAAGATAAGACTACAATCTTCAATCTGCT
* *
79297220 CCTTTGCTACCTCAGGGAGATAAG
1 CCCTTGCTACCTCAGGAAGATAAG
79297244 GATAGTGGCT
Statistics
Matches: 151, Mismatches: 41, Indels: 20
0.71 0.19 0.09
Matches are distributed among these distances:
43 1 0.01
44 97 0.64
45 44 0.29
46 6 0.04
47 3 0.02
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.26
Consensus pattern (44 bp):
CCCTTGCTACCTCAGGAAGATAAGACTACAATCTTCAATCTGCT
Found at i:79297148 original size:177 final size:178
Alignment explanation
Indices: 79296876--79297300 Score: 584
Period size: 178 Copynumber: 2.4 Consensus size: 178
79296866 CACTGTAACT
* * * * * * *
79296876 TCAGAGAGATAAGGTTGGTGGCTAAAATTTGCTCCCCTACTACCTTAGAAAGATAAGATTCATCG
1 TCAGGGAGATAAGGATAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGAAAGATAAGATTCACCG
** * ** *
79296941 CTTTTGATCTGCCCCACTGCTATCTCGAGGAGACAAAAT-TTGAATCATCAGTCTACACCCTTGT
66 CTTTCAATCTACCCCACTGCTATCTCGAGGAGACAAAATCTACAATCATCAGTCTACACCCTTGC
*
79297005 TACCTCAGGAAGATAAGACTACAATCTTCAGCCTGCTCCCTTACTACC
131 TACCTCAGGAAGATAAGACTACAATCTTCAACCTGCTCCCTTACTACC
* * *
79297053 TCAGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGGAAGATACGATTCACCG
1 TCAGGGAGATAAGGATAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGAAAGATAAGATTCACCG
* * * *
79297118 CTTTCAATCTACCCCACTGCTATCTCGAGGAGACAAGATCTACAATTATCAGTCTGCTCCCTTGC
66 CTTTCAATCTACCCCACTGCTATCTCGAGGAGACAAAATCTACAATCATCAGTCTACACCCTTGC
* * *
79297183 TACTTCAGGAAGATAAGACTACAATCTTCAACCTGCTCCTTTGCTACC
131 TACCTCAGGAAGATAAGACTACAATCTTCAACCTGCTCCCTTACTACC
* *
79297231 TCAGGGAGATAAGGATAGTGGCTAAAATCTTCTCCCTTGCTACCTCA-AAGAGATAAGATTCACC
1 TCAGGGAGATAAGGATAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGAA-AGATAAGATTCACC
79297295 GTCTTT
65 G-CTTT
79297301 GATCTACTCC
Statistics
Matches: 217, Mismatches: 28, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
177 92 0.42
178 121 0.56
179 4 0.02
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (178 bp):
TCAGGGAGATAAGGATAGTGGCTAAAATCTGCTCCCCTGCTACCTCAGAAAGATAAGATTCACCG
CTTTCAATCTACCCCACTGCTATCTCGAGGAGACAAAATCTACAATCATCAGTCTACACCCTTGC
TACCTCAGGAAGATAAGACTACAATCTTCAACCTGCTCCCTTACTACC
Found at i:79297413 original size:86 final size:86
Alignment explanation
Indices: 79297302--79298371 Score: 617
Period size: 86 Copynumber: 12.4 Consensus size: 86
79297292 ACCGTCTTTG
* ** * *
79297302 ATCTACTCCATTGTTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGTCTGCTCCACTACTGCTTAG
79297367 GGAGATAGGATGGTGGCTTAA
66 GGAGATAGGATGGTGGCTTAA
* * * * * *
79297388 ATTTGCTCCACTACTGCTTAGGGAGACGAGATCTACAATCTTCAGCCTACTCCAGTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGTCTGCTCCACTACTGCTTAG
79297453 GGAGATAGGATGGTGGCTTAA
66 GGAGATAGGATGGTGGCTTAA
* * * * * *
79297474 ATCTTCTCCCCTACTGCGTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTTCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGTCTGCTCCACTACTGCTTAG
79297539 GGAGATAGGATGGTGGCTTAA
66 GGAGATAGGATGGTGGCTTAA
* * * * * * *
79297560 ATCTGCTCCACTACTGCTTAGGGAGACAAGATTTTCCATTTTC-GATCTGCTCTACTATTGCTTA
1 ATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAG-TCTGCTCCACTACTGCTTA
* * * * ** *
79297624 GGTAGACAAGAT-CTACAATCTTTA
65 GGGAGATAGGATGGT---GGCTTAA
** * * * **** * *
79297648 GCCTGCTCCACTACTGCTTAGGGAGATAGGA--TAGTGGCTTAAATCTGCTCCACTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGTCTGCTCCACTACTGCTTAG
* * * * * **
79297711 AGAGACAAGAT-TTGCCATCTTCG
66 GGAGATAGGATGGTG---GCTTAA
* * *
79297734 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGTCTGCTCCACTACTGCTTAG
* **
79297799 AGAGATAGGATAATGGCTTAA
66 GGAGATAGGATGGTGGCTTAA
* * * * **
79297820 ATCTACTCCACTACTGCCTAGGGAGACAAGATTTGTC-ATCTTCGGTCTGCTCCACTACTATTTA
1 ATCTACTCCACTACTGCTTAGGGAGACAAGATCT-ACAATCTTCAGTCTGCTCCACTACTGCTTA
* * * * * **
79297884 GGAAGACAAGAT-CT-ACAATCTTC
65 GGGAGATAGGATGGTGGC--T-TAA
* * * * * ** * * *
79297907 AGCTTACTCCACTACTGCTTAAGGAGATAGGATGGT---GGCTTAAATCTGCTCCACTGCTGCTT
1 ATC-TACTCCACTACTGCTTAGGGAGACAAGAT-CTACAATCTTCAGTCTGCTCCACTACTGCTT
* * * ** ** **
79297969 AAGGAGACAAGATTTTCCATCTTCG
64 AGGGAGATAGGATGGT--GGCTTAA
* * *
79297994 ATCTACTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAATCTACTCCACTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGTCTGCTCCACTACTGCTTAG
79298059 GGAGATAGGATGGTGGCTTAA
66 GGAGATAGGATGGTGGCTTAA
* * *** * *
79298080 ATCTACTCCACTACTGCTTAGAGAGACAAGATTTGGTATCTTC-GATTTGCTCCACTACTACTTA
1 ATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAG-TCTGCTCCACTACTGCTTA
* * * * ** *
79298144 GAGAGACAAGAT-CTACAATCTTCA
65 GGGAGATAGGATGGT---GGCTTAA
** * * * * ** * *
79298168 GCCTACTCCACTACTACTTAGGGAGATAGGATGGT---GGCTTAAATCTGCTCCACTACTGCTTA
1 ATCTACTCCACTACTGCTTAGGGAGACAAGAT-CTACAATCTTCAGTCTGCTCCACTACTGCTTA
* * ** ** **
79298230 GGGAGACAAGATTTTCCATCTTCG
65 GGGAGATAGGATGGT--GGCTTAA
** * * * * * *
79298254 ATCTGTTCTACTACTGCTTAGAGAGACAAGATCTACAATCTTCAG-CTTACTTCACTATTTCTTA
1 ATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGTC-TGCTCCACTACTGCTTA
79298318 GGGAGATAGGATGGTGGCTTAA
65 GGGAGATAGGATGGTGGCTTAA
* **
79298340 ATCTGCTCCACTACTGCTTAGACAGACAAGAT
1 ATCTACTCCACTACTGCTTAGGGAGACAAGAT
79298372 TCGCCATCTT
Statistics
Matches: 758, Mismatches: 191, Indels: 70
0.74 0.19 0.07
Matches are distributed among these distances:
84 1 0.00
85 6 0.01
86 556 0.73
87 10 0.01
88 180 0.24
89 4 0.01
90 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (86 bp):
ATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGTCTGCTCCACTACTGCTTAG
GGAGATAGGATGGTGGCTTAA
Found at i:79297631 original size:130 final size:130
Alignment explanation
Indices: 79297474--79298589 Score: 1624
Period size: 130 Copynumber: 8.6 Consensus size: 130
79297464 GGTGGCTTAA
* * * *
79297474 ATCTTCTCCCCTACTGCGTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTTCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
* *
79297539 GGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTTTCCATTTTCG
66 GGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTTTCCATCTTCG
* * * * *
79297604 ATCTGCTCTACTATTGCTTAGGTAGACAAGATCTACAATCTTTAGCCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
* *
79297669 GGAGATAGGATAGTGGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTTGCCATCTTCG
66 GGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTTTCCATCTTCG
79297734 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
* ** * * *
79297799 AGAGATAGGATAATGGCTTAAATCTACTCCACTACTGCCTAGGGAGACAAGATTTGT-CATCTTC
66 GGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTT-TCCATCTTC
79297863 G
130 G
* ** * * *
79297864 GTCTGCTCCACTACTATTTAGGAAGACAAGATCTACAATCTTCAGCTTACTCCACTACTGCTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
*
79297929 GGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCTGCTTA-AGGAGACAAGATTTTCCATCTTC
66 GGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGA-GAGACAAGATTTTCCATCTTC
79297993 G
130 G
* * **
79297994 ATCTACTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAATCTACTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
* ***
79298059 GGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGAGAGACAAGATTTGGTATCTTCG
66 GGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTTTCCATCTTCG
* * * *
79298124 ATTTGCTCCACTACTACTTAGAGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
*
79298189 GGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTTTCCATCTTCG
66 GGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTTTCCATCTTCG
* * * * * * *
79298254 ATCTGTTCTACTACTGCTTAGAGAGACAAGATCTACAATCTTCAGCTTACTTCACTATTTCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
* ** *
79298319 GGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGACAGACAAGATTCGCCATCTTTG
66 GGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTTTCCATCTTCG
* * * * *
79298384 ATCTGCTCTATTACTGCTTAGAGAGACAAGATCTACAATCTTTAGCCTACTCCACTACTGCTTAT
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
* * *
79298449 GGAGATAGGATGGTGGCTTAAATCTACTCCACTATTGCTTAGAGAGACAAAATTTTCCATCTTCG
66 GGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTTTCCATCTTCG
* ** * * *
79298514 ATTTGCTCCACTACTATTTAGGGAGACAAGATCTACATTCTTCAGCCTATTCTACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
79298579 GGAGATAGGAT
66 GGAGATAGGAT
79298590 ACTCCCCTAC
Statistics
Matches: 878, Mismatches: 104, Indels: 8
0.89 0.11 0.01
Matches are distributed among these distances:
129 1 0.00
130 876 1.00
131 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (130 bp):
ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
GGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGAGAGACAAGATTTTCCATCTTCG
Found at i:79298148 original size:44 final size:44
Alignment explanation
Indices: 79297393--79298545 Score: 463
Period size: 44 Copynumber: 26.6 Consensus size: 44
79297383 CTTAAATTTG
* * * * * **
79297393 CTCCACTACTGCTTAGGGAGACGAGATCTACAATCTTCAGCCTA
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * * * * ** * *
79297437 CTCCAGTACTGCTTAGGGAGATAGGA--TGGTGGCTTAAATCTT
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * * * * * **
79297479 CTCCCCTACTGCGTAGGGAGACAAGATCTACAATCTTCAGCCTA
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * * * * ** * *
79297523 CTCCACTACTTCTTAGGGAGATAGGA--TGGTGGCTTAAATCTG
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * * * * *
79297565 CTCCACTACTGCTTAGGGAGACAAGATTTTCCATTTTCGATCTG
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * * * * * ** *
79297609 CTCTACTATTGCTTAG-GTAGACAAGATCTACAATCTTTAGCCTG
1 CTCCACTACTGCTTAGAG-AGACAAGATTTGCTATCTTCAATCTA
* * * * ** * *
79297653 CTCCACTACTGCTTAGGGAGATAGGA-TAG-TGGCTTAAATCTG
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * *
79297695 CTCCACTACTGCTTAGAGAGACAAGATTTGCCATCTTCGATCTG
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * * * **
79297739 CTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGCCTA
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * * * *
79297783 CTCCACTACTGCTTAGAGAGATAGGATAATG---GCTTAAATCTA
1 CTCCACTACTGCTTAGAGAGACAAGAT-TTGCTATCTTCAATCTA
* * ** *
79297825 CTCCACTACTGCCTAGGGAGACAAGATTTG-TCATCTTCGGTCTG
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCT-ATCTTCAATCTA
** * * * *
79297869 CTCCACTACTATTTAG-GAAGACAAGATCTACAATCTTC-AGCTTA
1 CTCCACTACTGCTTAGAG-AGACAAGATTTGCTATCTTCAATC-TA
* * * ** * *
79297913 CTCCACTACTGCTTA-AGGAGATAGGA--TGGTGGCTTAAATCTG
1 CTCCACTACTGCTTAGA-GAGACAAGATTTGCTATCTTCAATCTA
* * * *
79297955 CTCCACTGCTGCTTA-AGGAGACAAGATTTTCCATCTTCGATCTA
1 CTCCACTACTGCTTAGA-GAGACAAGATTTGCTATCTTCAATCTA
* * *
79297999 CTCCACTACTGCTTAGGGAGACAAGATCT-ATAATCTTCAATCTA
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCT-ATCTTCAATCTA
* * * * ** *
79298043 CTCCACTACTGCTTAGGGAGATAGGA--TGGTGGCTTAAATCTA
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * * *
79298085 CTCCACTACTGCTTAGAGAGACAAGATTTGGTATCTTCGATTTG
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * * * **
79298129 CTCCACTACTACTTAGAGAGACAAGATCTACAATCTTCAGCCTA
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * * * * ** * *
79298173 CTCCACTACTACTTAGGGAGATAGGA--TGGTGGCTTAAATCTG
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * * * *
79298215 CTCCACTACTGCTTAGGGAGACAAGATTTTCCATCTTCGATCTG
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * * * * *
79298259 TTCTACTACTGCTTAGAGAGACAAGATCTACAATCTTC-AGCTTA
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATC-TA
* * * * * * * ** * *
79298303 CTTCACTATTTCTTAGGGAGATAGGA--TGGTGGCTTAAATCTG
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * * ** *
79298345 CTCCACTACTGCTTAGACAGACAAGATTCGCCATCTTTGATCTG
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * * * * * **
79298389 CTCTATTACTGCTTAGAGAGACAAGATCTACAATCTTTAGCCTA
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
* * * ** *
79298433 CTCCACTACTGCTTATG-GAGATAGGA--TGGTGGCTTAAATCTA
1 CTCCACTACTGCTTA-GAGAGACAAGATTTGCTATCTTCAATCTA
* * * * * * *
79298475 CTCCACTATTGCTTAGAGAGACAAAATTTTCCATCTTCGATTTG
1 CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
** *
79298519 CTCCACTACTATTTAGGGAGACAAGAT
1 CTCCACTACTGCTTAGAGAGACAAGAT
79298546 CTACATTCTT
Statistics
Matches: 799, Mismatches: 275, Indels: 70
0.70 0.24 0.06
Matches are distributed among these distances:
41 3 0.00
42 261 0.33
43 12 0.02
44 519 0.65
45 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
CTCCACTACTGCTTAGAGAGACAAGATTTGCTATCTTCAATCTA
Found at i:79298652 original size:44 final size:44
Alignment explanation
Indices: 79298589--79298794 Score: 148
Period size: 44 Copynumber: 4.7 Consensus size: 44
79298579 GGAGATAGGA
* * *
79298589 TACTCCCCTACTGCGTAGGGAGACAAGATCTACAATCTTCAGCC
1 TACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAACC
* * * ** * *
79298633 TACTCCACTACTGCTTAGGGAGATAGGATGGT---GGCTTAAATC
1 TACTCCACTACTGCTTAGGGAGACAAGAT-CTACAATCTTCAACC
* * * * * * * * * *
79298675 TGCTTCACTACTACTCAGGGACACAATATTTGCCATCTTCAATC
1 TACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAACC
* * *
79298719 TGCTCCACTACTGTTTAGGGAGACAAGATCTACAATCTTCAGCC
1 TACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAACC
* * *
79298763 TTCTCCACTACTGCTTAGGGAGATAGGATCTA
1 TACTCCACTACTGCTTAGGGAGACAAGATCTA
79298795 TGAATTTATC
Statistics
Matches: 121, Mismatches: 37, Indels: 8
0.73 0.22 0.05
Matches are distributed among these distances:
41 1 0.01
42 26 0.21
44 93 0.77
45 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (44 bp):
TACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAACC
Found at i:79298752 original size:202 final size:202
Alignment explanation
Indices: 79298395--79298791 Score: 616
Period size: 202 Copynumber: 2.0 Consensus size: 202
79298385 TCTGCTCTAT
* * *
79298395 TACTGCTTAGAGAGACAAGATCTACAATCTTTAGCCTACTCCACTACTGCTTATGGAGATAGGAT
1 TACTGCGTAGAGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGAT
* * * * * * *
79298460 GGTGGCTTAAATCTACTCCACTATTGCTTAGAGAGACAAAATTTTCCATCTTCGATTTGCTCCAC
66 GGTGGCTTAAATCTACTCCACTACTACTCAGAGACACAAAATTTGCCATCTTCAATCTGCTCCAC
* *
79298525 TACTATTTAGGGAGACAAGATCTACATTCTTCAGCCTAT-TCTACTACTGCTTAGGGAGATAGGA
131 TACTATTTAGGGAGACAAGATCTACAATCTTCAGCCT-TCTCCACTACTGCTTAGGGAGATAGGA
79298589 TACTCCCC
195 TACTCCCC
*
79298597 TACTGCGTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGAT
1 TACTGCGTAGAGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGAT
* * * *
79298662 GGTGGCTTAAATCTGCTTCACTACTACTCAGGGACACAATATTTGCCATCTTCAATCTGCTCCAC
66 GGTGGCTTAAATCTACTCCACTACTACTCAGAGACACAAAATTTGCCATCTTCAATCTGCTCCAC
*
79298727 TACTGTTTAGGGAGACAAGATCTACAATCTTCAGCCTTCTCCACTACTGCTTAGGGAGATAGGAT
131 TACTATTTAGGGAGACAAGATCTACAATCTTCAGCCTTCTCCACTACTGCTTAGGGAGATAGGAT
79298792 CTATGAATTT
Statistics
Matches: 176, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
201 1 0.01
202 175 0.99
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (202 bp):
TACTGCGTAGAGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGAT
GGTGGCTTAAATCTACTCCACTACTACTCAGAGACACAAAATTTGCCATCTTCAATCTGCTCCAC
TACTATTTAGGGAGACAAGATCTACAATCTTCAGCCTTCTCCACTACTGCTTAGGGAGATAGGAT
ACTCCCC
Found at i:79304959 original size:3 final size:3
Alignment explanation
Indices: 79304951--79305247 Score: 218
Period size: 3 Copynumber: 100.3 Consensus size: 3
79304941 ATGAGAAATG
79304951 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
79304999 A-A GGTA ATA ATA ATT ATT ATA ATA GAGA GTA ATA GTA ATA GTA AAA
1 ATA -ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
79305045 ATA AAA ATA ATA GTA ATA ATA ATA ATG GTA ATA AAA ATA AAA ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
79305093 ATA ATA GTA ATA ATG ATA ATA ATA ATA ATA GTA ATA AT- ATA A-A ACTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
* * ** *
79305140 ATG AT- ATA ATA AT- GTA ATA ATA ATA AGC A-A ATA AGT- ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA
* * *
79305182 AGA A-A AT- ATA ATC ATA ATA ATA ATA AGA ATA ATA ATA ATGA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA
* *
79305225 ATAA ATA ATA GTA AAA ATA ATA A
1 AT-A ATA ATA ATA ATA ATA ATA A
79305248 AATTAACTAA
Statistics
Matches: 228, Mismatches: 50, Indels: 32
0.74 0.16 0.10
Matches are distributed among these distances:
2 16 0.07
3 201 0.88
4 11 0.05
ACGTcount: A:0.63, C:0.01, G:0.07, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:79310021 original size:30 final size:30
Alignment explanation
Indices: 79309985--79310068 Score: 123
Period size: 30 Copynumber: 2.8 Consensus size: 30
79309975 TAAAAAAAAC
*
79309985 CTAGCCACTCCTTTTCCACCACCAACTCCA
1 CTAGCCACTCATTTTCCACCACCAACTCCA
*
79310015 CTAGCCACTCTTTTTCCACCACCAACTCCA
1 CTAGCCACTCATTTTCCACCACCAACTCCA
* * *
79310045 TTAGCCACACATTCTCCACCACCA
1 CTAGCCACTCATTTTCCACCACCA
79310069 CTTGTACCTA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.25, C:0.48, G:0.04, T:0.24
Consensus pattern (30 bp):
CTAGCCACTCATTTTCCACCACCAACTCCA
Found at i:79310651 original size:25 final size:25
Alignment explanation
Indices: 79310623--79310678 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
79310613 ATATTACGTA
* *
79310623 TATATATATTTTATACTATTTTATT
1 TATATATATTTAATACTATATTATT
* *
79310648 TATATATCTTTAATATTATATTATT
1 TATATATATTTAATACTATATTATT
79310673 TATATA
1 TATATA
79310679 AATATTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATT
Found at i:79310651 original size:27 final size:26
Alignment explanation
Indices: 79310612--79310686 Score: 71
Period size: 25 Copynumber: 2.8 Consensus size: 26
79310602 TTTTAAATTT
*
79310612 TATATTACGTATATATATATTTTATAC
1 TATATTA-TTATATATATATTTTATAC
* * * *
79310639 TATTTTATT-TATATATCTTTAATAT
1 TATATTATTATATATATATTTTATAC
*
79310664 TATATTATTTATATAAATATTTT
1 TATATTA-TTATATATATATTTT
79310687 TTTTTTCTAC
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
25 19 0.51
26 3 0.08
27 15 0.41
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (26 bp):
TATATTATTATATATATATTTTATAC
Found at i:79310753 original size:25 final size:25
Alignment explanation
Indices: 79310705--79310790 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 25
79310695 ACATGTTATC
*
79310705 TTATGTATATA-TCTT-A-ACTATA
1 TTATGTATATATTTTTAACACTATA
*
79310727 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATATTTTTAACACTATA
* *
79310752 TTATGTACATATTTTTAATA-T-TA
1 TTATGTATATATTTTTAACACTATA
* *
79310775 TCATGTATTTATTTTT
1 TTATGTATATATTTTT
79310791 TATATATGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
22 10 0.19
23 18 0.34
24 2 0.04
25 23 0.43
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.56
Consensus pattern (25 bp):
TTATGTATATATTTTTAACACTATA
Found at i:79310787 original size:23 final size:24
Alignment explanation
Indices: 79310707--79310797 Score: 73
Period size: 23 Copynumber: 3.9 Consensus size: 24
79310697 ATGTTATCTT
*
79310707 ATGTATATA-TCTTAACTATAT-T-
1 ATGTATATATTTTTAA-TATATATC
* * *
79310729 ATGTATGTATTTTTAACACTATATT
1 ATGTATATATTTTTAATA-TATATC
*
79310754 ATGTACATATTTTTAATAT-TATC
1 ATGTATATATTTTTAATATATATC
* *
79310777 ATGTATTTATTTTTTATATAT
1 ATGTATATATTTTTAATATAT
79310798 GTACATATTG
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
22 9 0.17
23 27 0.50
24 3 0.06
25 15 0.28
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (24 bp):
ATGTATATATTTTTAATATATATC
Found at i:79310946 original size:16 final size:14
Alignment explanation
Indices: 79310927--79310960 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 14
79310917 TATTATTCTA
79310927 ATATTTTGATATTTT
1 ATATTTT-ATATTTT
79310942 GATATTTTATATTTT
1 -ATATTTTATATTTT
79310957 ATAT
1 ATAT
79310961 ATTTTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 7 0.39
16 7 0.39
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (14 bp):
ATATTTTATATTTT
Found at i:79310955 original size:7 final size:8
Alignment explanation
Indices: 79310927--79310960 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
79310917 TATTATTCTA
79310927 ATATTTTG
1 ATATTTTG
79310935 ATATTTTG
1 ATATTTTG
79310943 ATATTTT-
1 ATATTTTG
79310950 ATATTTT-
1 ATATTTTG
79310957 ATAT
1 ATAT
79310961 ATTTTATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 11 0.42
8 15 0.58
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (8 bp):
ATATTTTG
Found at i:79310962 original size:16 final size:15
Alignment explanation
Indices: 79310927--79310967 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
79310917 TATTATTCTA
79310927 ATATTTTGATATTTTG
1 ATATTTT-ATATTTTG
*
79310943 ATATTTTATATTTTAT
1 ATATTTTATATTTT-G
79310959 ATATTTTAT
1 ATATTTTAT
79310968 TATTCCCATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.30
16 16 0.70
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (15 bp):
ATATTTTATATTTTG
Found at i:79318471 original size:45 final size:40
Alignment explanation
Indices: 79318379--79318485 Score: 108
Period size: 40 Copynumber: 2.6 Consensus size: 40
79318369 TTATGCTTAA
*
79318379 GATGAAAACCCGAAAAGGGCATCTTAAAAAAAAAGATCAG
1 GATGAAAACCCGAAAAGGGCGTCTTAAAAAAAAAGATCAG
** * *
79318419 GGCGAAAACCCGAAAAGGGCGTCTTGATTAGTACAAAAAGATTAG
1 GATGAAAACCCGAAAAGGGCGTCTT-A--A--AAAAAAAGATCAG
*
79318464 GATGAAAACCCG-AGAGGGCGTC
1 GATGAAAACCCGAAAAGGGCGTC
79318486 CTAATGAAAC
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
40 22 0.41
41 1 0.02
43 1 0.02
44 9 0.17
45 21 0.39
ACGTcount: A:0.43, C:0.17, G:0.26, T:0.14
Consensus pattern (40 bp):
GATGAAAACCCGAAAAGGGCGTCTTAAAAAAAAAGATCAG
Found at i:79319468 original size:71 final size:71
Alignment explanation
Indices: 79319227--79319922 Score: 844
Period size: 71 Copynumber: 9.5 Consensus size: 71
79319217 TTATTCATGC
* *
79319227 TTTCAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGACACGCTGAGGTATTTTTAA
1 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAA
79319291 --T-T-T
65 TTTCTGT
* *
79319294 TTTCAAAAA--AACTCATATTGC-AGAGGTGAGTTGAGCCTCGGCACACGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-ACACGCTGAGGTAATTTCAA
79319356 TTTCTG-
65 TTTCTGT
79319362 TTTCAATGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAA
1 TTTC-A------AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAA
79319427 TTTCAATTTCTGT
59 TTTCAATTTCTGT
*
79319440 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACGCTGAGGTAATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAA-TTTCAA
79319504 TTTCTGT
65 TTTCTGT
**
79319511 TCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
1 T--T--TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTAATT
79319576 T-AATTTCTGTT
61 TCAATTTCTG-T
79319587 TTTC-AAAATCAACTCATATTGCGAGAAGGTGAGTTGAGCCTC-GACACGCTGAGGT-ATTTCAA
1 TTTCAAAAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAA
79319649 TTTCTGT
65 TTTCTGT
* * *
79319656 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG---ACACGCTGAGGTAATTTC
79319721 AATTTCTGT
63 AATTTCTGT
79319730 TTTCAATTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
1 TTTC-------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTA
* *
79319795 TTTTTAAATTTCTGTT
58 -ATTTCAATTTCTG-T
* *
79319811 TTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTC
1 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTAATTTC
79319876 AATTTCTGT
63 AATTTCTGT
* *
79319885 TTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
79319923 ACCTTTTAAT
Statistics
Matches: 563, Mismatches: 22, Indels: 82
0.84 0.03 0.12
Matches are distributed among these distances:
63 3 0.01
64 27 0.05
65 19 0.03
66 5 0.01
67 5 0.01
68 5 0.01
69 26 0.05
70 57 0.10
71 72 0.13
72 16 0.03
73 42 0.07
74 21 0.04
75 63 0.11
76 59 0.10
77 52 0.09
78 23 0.04
79 12 0.02
80 12 0.02
81 43 0.08
82 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (71 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAAT
TTCTGT
Found at i:79319543 original size:146 final size:142
Alignment explanation
Indices: 79319231--79320281 Score: 1068
Period size: 146 Copynumber: 7.2 Consensus size: 142
79319221 TCATGCTTTC
* *
79319231 AAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGACACGCTGAGGTATTTTTAA--T-
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTC
79319292 T-TTTTCAAAAA--AACTCATATTGC-AGAGGTGAGTTGAGCCTCGGCACACGCTGAGGTATTTT
66 TGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-ACACGCTGAGGTATTTT
79319353 CAATTTCTGTTTCA
130 CAATTTCTGTTT-A
*
79319367 ATGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCA
1 A-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCA
79319432 ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-CACGCTGAGGTA
61 ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGT-
79319496 ATTTTCAATTTCTGTTCGTAAA
125 ATTTTCAATTTCTGTT--T--A
79319518 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT-AATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTAATTTCAATTT
79319582 CTGTTTTTC-AAAATCAACTCATATTGCGAGAAGGTGAGTTGAGCCTC-GACACGCTGAGGTA-T
65 CTG-TTTTCAAAAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCTCGGACACGCTGAGGTATT
*
79319644 TTCAATTTCTGTTTT
128 TTCAATTTCTGTTTA
* * * *
79319659 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG---ACACGCTGAGGTAATTTCAAT
79319724 TTCTGTTTTCAATTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
63 TTCTGTTTTC-------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCT
*
79319789 GAGGTATTTTTAAATTTCTGTTTTTCA
120 GAGGTA-TTTTCAATTTCTG--TTT-A
* *
79319816 AAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTAATTTCAATTT
* * ** *
79319881 CTGTTTGTCAAGAATCAACTCATATTGCGAGAGGT--G--G-G--T-TGA-AC-CT--TTTAATT
65 CTGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTT
* *
79319934 TC---TACT-TTTT
129 TCAATTTCTGTTTA
* * * * * *
79319944 CAA-AATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTAATTTCAATTT
* * **
79320008 TTGTGTTT-TAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACGCTGAGGTA
65 CTGT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG--ACACGCTGAGGTA
79320072 TTTTCAATTAACTTTTGATTTCTGTTTTTCAA
126 TTTTC-----A------ATTTCTG--TTT--A
*
79320104 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGT-ATTTTAATTTC
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTC
* *
79320168 TGTTTTTCAAAAATCAACTCATATTGCGAGAAGGTGAGTTGAGCCTCAGGACACGATGAGGTAAT
66 TG-TTTTCAAAAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCTC-GGACACGCTGAGGTATT
*
79320233 TTCAATTTCTGTTTG
128 TTCAATTTCTGTTTA
** *
79320248 TCAAAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
79320282 ACCTTTTAAT
Statistics
Matches: 771, Mismatches: 62, Indels: 156
0.78 0.06 0.16
Matches are distributed among these distances:
126 22 0.03
127 57 0.07
128 5 0.01
129 3 0.00
130 1 0.00
131 1 0.00
132 3 0.00
133 1 0.00
135 4 0.01
136 3 0.00
137 1 0.00
138 4 0.01
139 4 0.01
140 3 0.00
141 66 0.09
142 35 0.05
143 21 0.03
144 41 0.05
145 16 0.02
146 82 0.11
147 62 0.08
148 35 0.05
149 45 0.06
150 17 0.02
151 23 0.03
152 14 0.02
154 12 0.02
155 29 0.04
156 5 0.01
157 37 0.05
158 4 0.01
159 29 0.04
160 34 0.04
161 52 0.07
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33
Consensus pattern (142 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTAATTTCAATTTC
TGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTC
AATTTCTGTTTA
Found at i:79319776 original size:81 final size:79
Alignment explanation
Indices: 79319660--79319922 Score: 332
Period size: 76 Copynumber: 3.4 Consensus size: 79
79319650 TTCTGTTTTC
*
79319660 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAAT
*
79319724 TTCTGTTTTCAATTTAA
63 TTCTGTTTTCAATTCAA
*
79319741 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTCAATTT
79319806 CTG-TTT---TTCAA
65 CTGTTTTCAATTCAA
* * *
79319817 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
79319882 TG-TTT---GTC--
66 TGTTTTCAATTCAA
* *
79319890 AAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
79319923 ACCTTTTAAT
Statistics
Matches: 169, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
73 30 0.18
75 16 0.09
76 56 0.33
79 15 0.09
80 12 0.07
81 38 0.22
82 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (79 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTCAATTCAA
Found at i:79320034 original size:72 final size:72
Alignment explanation
Indices: 79319926--79320281 Score: 351
Period size: 72 Copynumber: 4.7 Consensus size: 72
79319916 GGGTTGAACC
* * * * *
79319926 TTTT-AATTTCTACTTTTTCAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACG
1 TTTTCAATTTCT-GTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
79319990 CTGAGGTA
65 CTGAGGTA
* ** *
79319998 TTTTCAATTTTTGTGTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACA
1 TTTTCAATTTCTGT-TTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GACA
79320062 CGCTGAGGTA
63 CGCTGAGGTA
79320072 TTTTCAATTAACTTTTGATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTC-----A------ATTTCTGTTTTT-AAAA---ATCAACTCATATTGCGAGAGGTGAGTTG
*
79320137 AGCCTC-AGACACGCTGAGGTA
51 AGCCTCGGGACACGCTGAGGTA
*
79320158 TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTTTT-AAAAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCTCGGGACAC
*
79320222 GATGAGGTA
64 GCTGAGGTA
* * * *
79320231 ATTTCAATTTCTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TTTTCAATTTCTGTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
79320282 ACCTTTTAAT
Statistics
Matches: 242, Mismatches: 19, Indels: 46
0.79 0.06 0.15
Matches are distributed among these distances:
71 18 0.07
72 64 0.26
73 49 0.20
74 46 0.19
79 1 0.00
80 1 0.00
84 4 0.02
85 7 0.03
86 19 0.08
89 33 0.14
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35
Consensus pattern (72 bp):
TTTTCAATTTCTGTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
TGAGGTA
Found at i:79320180 original size:74 final size:73
Alignment explanation
Indices: 79320084--79320281 Score: 294
Period size: 74 Copynumber: 2.7 Consensus size: 73
79320074 TTCAATTAAC
*
79320084 TTTTGATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACA
1 TTTTAATTTCTGTTTTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
79320148 CGCTGAGGT-A
63 CGATGAGGTAA
79320158 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAGGTGAGTTGAGCCTCAGGACACG
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCTCAGGACACG
79320223 ATGAGGTAA
65 ATGAGGTAA
* * *
79320232 TTTCAATTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
79320282 ACCTTTTAAT
Statistics
Matches: 116, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
71 22 0.19
72 27 0.23
73 33 0.28
74 34 0.29
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (73 bp):
TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGA
TGAGGTAA
Found at i:79320205 original size:161 final size:159
Alignment explanation
Indices: 79319945--79320239 Score: 443
Period size: 161 Copynumber: 1.8 Consensus size: 159
79319935 CTACTTTTTC
* * * *
79319945 AAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGAGACACGCTGAGGTATTTTCAATTTCT
** * *
79320010 GTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACGCTGAGGTATTT
66 GTGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGATGAGGTAATT
79320075 TCAATTAACTTTTGATTTCTGTTTTTCAAAA
129 TCAATTAACTTTTGATTTCTGTTTTTCAAAA
*
79320106 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCTGAGGTATTTT-AATTTCT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGAGACACGCTGAGGTATTTTCAATTTCT
79320169 GT-TTTTCAAAAATCAACTCATATTGCGAGAAGGTGAGTTGAGCCTCAGGACACGATGAGGTAAT
66 GTGTTTT--AAAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCTCAGGACACGATGAGGTAAT
79320233 TTCAATT
128 TTCAATT
79320240 TCTGTTTGTC
Statistics
Matches: 122, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
158 4 0.03
159 28 0.23
160 36 0.30
161 54 0.44
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.33
Consensus pattern (159 bp):
AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGAGACACGCTGAGGTATTTTCAATTTCT
GTGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTC
AATTAACTTTTGATTTCTGTTTTTCAAAA
Found at i:79320259 original size:73 final size:71
Alignment explanation
Indices: 79320105--79320281 Score: 284
Period size: 73 Copynumber: 2.5 Consensus size: 71
79320095 GTTTTTCAAA
* *
79320105 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTAATTTCTG
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGATGAGGTATTTCAATTTCTG
*
79320170 TTTTTC
66 TTTGTC
79320176 AAAAATCAACTCATATTGCGAGAAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTT
1 AAAAATCAACTCATATTGCGAG-AGGTGAGTTGAGCCTCA-GACACGATGAGGT-ATTTCAATTT
79320241 CTGTTTGTC
63 CTGTTTGTC
*
79320250 -AAAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
79320282 ACCTTTTAAT
Statistics
Matches: 99, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
71 22 0.22
72 27 0.27
73 33 0.33
74 17 0.17
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31
Consensus pattern (71 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGATGAGGTATTTCAATTTCTG
TTTGTC
Found at i:79320290 original size:359 final size:361
Alignment explanation
Indices: 79319574--79320641 Score: 1545
Period size: 359 Copynumber: 3.0 Consensus size: 361
79319564 GCTGAGGTAA
* * * *
79319574 TTTAATTTCT-GTTTTTCAAAATCAACTCATATTGCGAGAAGGTGAGTTGAGCCTC--GACACGC
1 TTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCAAG-AGGTGAGTTGAGCCTCGGGGCACGC
* * **
79319636 TGAGGTA-TTTCAATTTCTGT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-
65 TGAGGTATTTTCAATTTTTGTGTTT-TAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
* * * ***
79319698 GGCTCACATGCTGAGGTATTTTCAA-T---TTCTG-TTT-TCAATTT--AAAAAAATCAACTCAT
129 GG-ACACACGCTGAGGTATTTTCAATTAACTTTTGATTTCTGTTTTTCAAAAAAAATCAACTCAT
79319755 ATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAA
193 ATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTAAATTTCTGTTTTTC--AAA
79319820 AATCAACTCATATTGCGA-AAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTG
255 AATCAACTCATATTGCGAGAAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTG
79319884 TTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCT
320 TTTGTCAA-AATCAACTCATATTGCGAGAGGTGGGTTGAACCT
79319927 TTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCT
79319992 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
66 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
79320057 ACACACGCTGAGGTATTTTCAATTAACTTTTGATTTCTGTTTTTCAAAAAAAATCAACTCATATT
131 ACACACGCTGAGGTATTTTCAATTAACTTTTGATTTCTGTTTTTCAAAAAAAATCAACTCATATT
79320122 GCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTATTTT-AATTTCTGTTTTTCAAAAATCAA
196 GCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAATTTCTGTTTTTCAAAAATCAA
79320185 CTCATATTGCGAGAAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTC
261 CTCATATTGCGAGAAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTC
79320250 AAAATCAACTCATATTGCGAGAGGTGGGTTGAACCT
326 AAAATCAACTCATATTGCGAGAGGTGGGTTGAACCT
*
79320286 TTTAATTTCTACTTTTCCAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCT
79320351 GAGGTATTTTCAA-TTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
66 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
*
79320415 ACACACGCCGAGGTATTTTCAATTAAGCCTTTTGATTTCTGTTTTTCCAAAAAAAAATCAACTCA
131 ACACACGCTGAGGTATTTTCAATTAA--CTTTTGATTTCTGTTTTT-C-AAAAAAAATCAACTCA
* * * **
79320480 TATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAC-CAGGTATTTTCCATTTCTGTTTTCATTATT
192 TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAATTTCTG----------T
* *
79320544 TTTTTAAAAATCAACTCATATTGCGAG-A--TGAGTTGAGCCTCAAGACAC-ATTGAGGTAATTT
247 TTTTCAAAAATCAACTCATATTGCGAGAAGGTGAGTTGAGCCTCAGGACACGA-TGAGGTAATTT
*
79320605 CAATTTCTATTT-TCAAAATTCAACTCATATTGCGAGA
311 CAATTTCTGTTTGTCAAAA-TCAACTCATATTGCGAGA
79320642 AATGAGTTGA
Statistics
Matches: 659, Mismatches: 23, Indels: 49
0.90 0.03 0.07
Matches are distributed among these distances:
353 26 0.04
354 25 0.04
355 13 0.02
356 67 0.10
357 6 0.01
358 76 0.12
359 132 0.20
360 76 0.12
361 18 0.03
362 59 0.09
363 26 0.04
364 41 0.06
369 7 0.01
370 59 0.09
372 1 0.00
373 27 0.04
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (361 bp):
TTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCT
GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
ACACACGCTGAGGTATTTTCAATTAACTTTTGATTTCTGTTTTTCAAAAAAAATCAACTCATATT
GCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAATTTCTGTTTTTCAAAAATCAA
CTCATATTGCGAGAAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGTTTGTC
AAAATCAACTCATATTGCGAGAGGTGGGTTGAACCT
Found at i:79320728 original size:73 final size:72
Alignment explanation
Indices: 79320544--79320804 Score: 357
Period size: 73 Copynumber: 3.6 Consensus size: 72
79320534 TTTCATTATT
* *
79320544 TTTTTAAAAATCAACTCATATTGCGAG--ATGAGTTGAGCCTCAAGACACATTGAGGTAATTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
*
79320607 ATTTCTA
66 ATTTCTG
* *
79320614 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
79320679 ATTTCTG
66 ATTTCTG
* * * * *
79320686 CTTTTCAAAATTCAACCCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 -TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
79320751 AATTTCTG
65 AATTTCTG
* *
79320759 TTGTCAAAAAAATCAACTCATATTGTGA-AAAGTGAGTTGAGCCTCA
1 TTTTC--AAAAATCAACTCATATTGCGAGAAA-TGAGTTGAGCCTCA
79320805 GTTCACATGT
Statistics
Matches: 170, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
70 25 0.15
72 44 0.26
73 70 0.41
74 31 0.18
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Consensus pattern (72 bp):
TTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
ATTTCTG
Found at i:79321467 original size:29 final size:30
Alignment explanation
Indices: 79321431--79321513 Score: 123
Period size: 29 Copynumber: 2.8 Consensus size: 30
79321421 ATAAAAAAAC
*
79321431 CTAGCCACTCCTTTTCCACCACCAAC-CCA
1 CTAGCCACTCATTTTCCACCACCAACTCCA
*
79321460 CTAGCCACTCTTTTTCCACCACCAACTCCA
1 CTAGCCACTCATTTTCCACCACCAACTCCA
* *
79321490 CTAGCCACACATTCTCCACCACCA
1 CTAGCCACTCATTTTCCACCACCA
79321514 CTTGTACCTA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 25 0.51
30 24 0.49
ACGTcount: A:0.25, C:0.49, G:0.04, T:0.22
Consensus pattern (30 bp):
CTAGCCACTCATTTTCCACCACCAACTCCA
Found at i:79322031 original size:23 final size:23
Alignment explanation
Indices: 79321991--79322118 Score: 68
Period size: 23 Copynumber: 5.5 Consensus size: 23
79321981 TTTTTTTTGT
79321991 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATATTA
* *
79322014 TATTA-TATA-TTCTT-TTAATA
1 TATTATTATATTTCTTAATATTA
* * *
79322034 TATTAGGTATATTT-TAAATTTTA
1 TATTA-TTATATTTCTTAATATTA
* * * *
79322057 TATTACGTATATATATATTTATACTA
1 TATTA--T-TATATTTCTTAATATTA
*
79322083 T-TTATTTATATATCTTTAATATTA
1 TATTA-TTATATTTC-TTAATATTA
79322107 TATTATTTATAT
1 TATTA-TTATAT
79322119 ATATATTTTT
Statistics
Matches: 80, Mismatches: 16, Indels: 16
0.71 0.14 0.14
Matches are distributed among these distances:
20 9 0.11
21 5 0.06
22 9 0.11
23 22 0.28
24 10 0.12
25 19 0.24
26 6 0.08
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (23 bp):
TATTATTATATTTCTTAATATTA
Found at i:79322035 original size:20 final size:20
Alignment explanation
Indices: 79321994--79322038 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
79321984 TTTTTGTTAT
*
79321994 TATTATATTTCTTAATATTA
1 TATTATATTTCTTAATAATA
*
79322014 TATTATATATTCTT-TTAATA
1 TATTATAT-TTCTTAATAATA
79322034 TATTA
1 TATTA
79322039 GGTATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
TATTATATTTCTTAATAATA
Found at i:79322088 original size:13 final size:12
Alignment explanation
Indices: 79322064--79322126 Score: 56
Period size: 12 Copynumber: 5.1 Consensus size: 12
79322054 TTATATTACG
*
79322064 TATATATATATT
1 TATATATTTATT
79322076 TATACTATTTATT
1 TATA-TATTTATT
*
79322089 TATATATCT-TT
1 TATATATTTATT
*
79322100 AATATTATATTATT
1 TATA-TAT-TTATT
*
79322114 TATATATATATT
1 TATATATTTATT
79322126 T
1 T
79322127 TTCTACATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
11 5 0.12
12 16 0.39
13 15 0.37
14 5 0.12
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (12 bp):
TATATATTTATT
Found at i:79322092 original size:21 final size:23
Alignment explanation
Indices: 79322068--79322120 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 23
79322058 ATTACGTATA
79322068 TATATATTT-ATACTAT-TTATT
1 TATATATTTAATACTATATTATT
*
79322089 TATATATCTTTAATATTATATTATT
1 TATATA--TTTAATACTATATTATT
79322114 TATATAT
1 TATATAT
79322121 ATATTTTTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 6 0.22
23 4 0.15
24 6 0.22
25 11 0.41
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TATATATTTAATACTATATTATT
Found at i:79322208 original size:19 final size:20
Alignment explanation
Indices: 79322184--79322241 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 20
79322174 TTTTTAACAC
79322184 TATAT-TATGTACATATTTT
1 TATATATATGTACATATTTT
**
79322203 TATATTATCATGTATTTATTTT
1 TATA-TAT-ATGTACATATTTT
79322225 T-TATATATGTACATATT
1 TATATATATGTACATATT
79322242 GATGTAGTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
19 13 0.41
20 4 0.12
21 3 0.09
22 12 0.38
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (20 bp):
TATATATATGTACATATTTT
Found at i:79322371 original size:8 final size:8
Alignment explanation
Indices: 79322353--79322404 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
79322343 TAATTATTAT
*
79322353 TATTCTAA
1 TATTTTAA
*
79322361 TATTTTGA
1 TATTTTAA
79322369 TATTTTAA
1 TATTTTAA
79322377 TA-TTTAA
1 TATTTTAA
79322384 TATTTTATA
1 TATTTTA-A
*
79322393 TATTTTAT
1 TATTTTAA
79322401 TATT
1 TATT
79322405 GCCATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (8 bp):
TATTTTAA
Found at i:79322395 original size:24 final size:24
Alignment explanation
Indices: 79322353--79322404 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
79322343 TAATTATTAT
79322353 TATTCTAATATTTTGATATTTTAA
1 TATTCTAATATTTTGATATTTTAA
* *
79322377 TATT-TAATATTTTATATATTTTAT
1 TATTCTAATATTTT-GATATTTTAA
79322401 TATT
1 TATT
79322405 GCCATCATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (24 bp):
TATTCTAATATTTTGATATTTTAA
Found at i:79326324 original size:48 final size:49
Alignment explanation
Indices: 79326208--79326348 Score: 171
Period size: 48 Copynumber: 2.9 Consensus size: 49
79326198 ATGAGATCAT
* *
79326208 GTGTAAGACCATGTTTGGGACATGGCAT-AGGCATATGAAATGAGAGCCA
1 GTGTAAGACCATGTTTGGGACATGGCATCA-GCATATGATATGTGAGCCA
*
79326257 GTGTAAGACCATGTTTGGGACATGGCATCAGCAT-TGATATGTGGGCCA
1 GTGTAAGACCATGTTTGGGACATGGCATCAGCATATGATATGTGAGCCA
* * * * * *
79326305 GTGTAAGACTATATCTGGGATATGGCATCGGCATCTG-TATGTGA
1 GTGTAAGACCATGTTTGGGACATGGCATCAGCATATGATATGTGA
79326349 TTTCAGTAAT
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
48 46 0.57
49 34 0.42
50 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (49 bp):
GTGTAAGACCATGTTTGGGACATGGCATCAGCATATGATATGTGAGCCA
Found at i:79333840 original size:42 final size:42
Alignment explanation
Indices: 79333760--79333978 Score: 156
Period size: 42 Copynumber: 5.1 Consensus size: 42
79333750 ATATGGAATC
* * *
79333760 GGCATCGGTATGTGATTTCATGTAAGACCATATCTGGGATAT
1 GGCATCGATATGAGATTTCATGTAAGACCATATCTGGGACAT
* * * *
79333802 GGCGTTGATATGAGATTTCGTGTAAGACCA-AGTTTGGGACAT
1 GGCATCGATATGAGATTTCATGTAAGACCATA-TCTGGGACAT
* * *
79333844 GGCATCGATATGAGGTCT-ATTGTAAGACCATGTCTGGGACAT
1 GGCATCGATATGAGATTTCA-TGTAAGACCATATCTGGGACAT
* * * * *
79333886 GGCATCGACACCGACATGAGACTTCGTATAAGACCATATCTGGGATAT
1 GGCAT------CGATATGAGATTTCATGTAAGACCATATCTGGGACAT
* * * * *
79333934 GGCATCGGTATGTAGA-CTCATGTTAGACCATGTCGGGGACAT
1 GGCATCGATATG-AGATTTCATGTAAGACCATATCTGGGACAT
79333976 GGC
1 GGC
79333979 TTTGGCGTTC
Statistics
Matches: 135, Mismatches: 31, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
41 1 0.01
42 98 0.73
43 3 0.02
48 33 0.24
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (42 bp):
GGCATCGATATGAGATTTCATGTAAGACCATATCTGGGACAT
Found at i:79333936 original size:90 final size:90
Alignment explanation
Indices: 79333811--79333978 Score: 216
Period size: 90 Copynumber: 1.9 Consensus size: 90
79333801 TGGCGTTGAT
* * * *
79333811 ATGAGATTTCGTGTAAGACCAAGTTTGGGACATGGCATCGATATG-AG-GTCTATTGTAAGACCA
1 ATGAGACTTCGTATAAGACCAAGTCTGGGACATGGCATCGATATGTAGACTC-A-TGTAAGACCA
*
79333874 TGTCTGGGACATGGCATCGACACCGAC
64 TGTCGGGGACATGGCATCGACACCGAC
* * *
79333901 ATGAGACTTCGTATAAGACCATA-TCTGGGATATGGCATCGGTATGTAGACTCATGTTAGACCAT
1 ATGAGACTTCGTATAAGACCA-AGTCTGGGACATGGCATCGATATGTAGACTCATGTAAGACCAT
79333965 GTCGGGGACATGGC
65 GTCGGGGACATGGC
79333979 TTTGGCGTTC
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
90 61 0.91
91 4 0.06
92 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (90 bp):
ATGAGACTTCGTATAAGACCAAGTCTGGGACATGGCATCGATATGTAGACTCATGTAAGACCATG
TCGGGGACATGGCATCGACACCGAC
Found at i:79339861 original size:39 final size:40
Alignment explanation
Indices: 79339816--79339983 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
79339806 CGGGGTTTAG
* * *
79339816 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
79339855 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
79339895 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
79339935 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
79339976 CCGGATAT
1 CCGGATAT
79339984 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:79339966 original size:41 final size:40
Alignment explanation
Indices: 79339839--79339983 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
79339829 CTCGCACAAG
* * * * *
79339839 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
79339879 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
79339919 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
79339960 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
79339984 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:79342177 original size:37 final size:37
Alignment explanation
Indices: 79342127--79342201 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
79342117 TTGGTTGTAA
*
79342127 CTAGCCATTGGAATGGCTAGTGATAGTAAATTTAATG
1 CTAGCCATTGGAATGGCTAGTGACAGTAAATTTAATG
*
79342164 CTAGCCATTGGAATGGCTAGTGACAGTAAATTTGATG
1 CTAGCCATTGGAATGGCTAGTGACAGTAAATTTAATG
79342201 C
1 C
79342202 ATACTTATGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (37 bp):
CTAGCCATTGGAATGGCTAGTGACAGTAAATTTAATG
Found at i:79345707 original size:13 final size:13
Alignment explanation
Indices: 79345689--79345713 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79345679 ATTCAGCCAC
79345689 AAATAATCAATTG
1 AAATAATCAATTG
79345702 AAATAATCAATT
1 AAATAATCAATT
79345714 AAGCTACTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATAATCAATTG
Found at i:79348983 original size:41 final size:41
Alignment explanation
Indices: 79348924--79349042 Score: 170
Period size: 41 Copynumber: 2.9 Consensus size: 41
79348914 TGTTACTAAA
*
79348924 TACTACATGA-TTGCCACTGATACTGTGATGGGCTAAGGCCC
1 TACTACAT-ATTTGACACTGATACTGTGATGGGCTAAGGCCC
* *
79348965 TACTACATATTTGACACTGAAACTGTGATGGGCTAAGGTCC
1 TACTACATATTTGACACTGATACTGTGATGGGCTAAGGCCC
* *
79349006 TACTACATATTTGATACTG-TACTGAGATGGGCTAAGG
1 TACTACATATTTGACACTGATACTGTGATGGGCTAAGG
79349043 ACTAAATTGT
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
40 17 0.24
41 54 0.76
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (41 bp):
TACTACATATTTGACACTGATACTGTGATGGGCTAAGGCCC
Found at i:79357614 original size:3 final size:3
Alignment explanation
Indices: 79357606--79357633 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
79357596 ATACTACAAA
79357606 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
79357634 TATCATCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:79357843 original size:31 final size:31
Alignment explanation
Indices: 79357798--79357864 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
79357788 TATAATGGTA
* * *
79357798 AATTTGACCCTCAACCTTTTAAAAATAGTCG
1 AATTTAACCATCAACCTTTTAAAAAGAGTCG
*
79357829 AATTTAACCATCAACCTTTTAAAAAGAGTCT
1 AATTTAACCATCAACCTTTTAAAAAGAGTCG
79357860 AATTT
1 AATTT
79357865 CTATATTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.19, G:0.07, T:0.34
Consensus pattern (31 bp):
AATTTAACCATCAACCTTTTAAAAAGAGTCG
Found at i:79359696 original size:27 final size:26
Alignment explanation
Indices: 79359666--79359716 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
79359656 TGCTTTATAC
*
79359666 ATTATTTATTTTAAACTTATTTTATGT
1 ATTATTCATTTTAAA-TTATTTTATGT
*
79359693 ATTATTCATTTTAAATTGTTTTAT
1 ATTATTCATTTTAAATTATTTTAT
79359717 TGGTTACTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (26 bp):
ATTATTCATTTTAAATTATTTTATGT
Found at i:79362093 original size:20 final size:20
Alignment explanation
Indices: 79362052--79362096 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
79362042 AATTGGGTTA
* *
79362052 TAATTTTTTAATTAATTTAT
1 TAATTTTTAAATTAATTAAT
79362072 TAATTTTTAAATT-ATTAAAT
1 TAATTTTTAAATTAATT-AAT
79362092 TAATT
1 TAATT
79362097 ATTATTGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TAATTTTTAAATTAATTAAT
Found at i:79362837 original size:11 final size:11
Alignment explanation
Indices: 79362823--79362862 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
79362813 ATTTTCTCCC
79362823 TATTTTGCTAT
1 TATTTTGCTAT
*
79362834 TATTTTACTAT
1 TATTTTGCTAT
* *
79362845 TATGTTGCTAC
1 TATTTTGCTAT
79362856 TATTTTG
1 TATTTTG
79362863 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.10, G:0.10, T:0.60
Consensus pattern (11 bp):
TATTTTGCTAT
Found at i:79362959 original size:30 final size:29
Alignment explanation
Indices: 79362899--79362960 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 29
79362889 ACTTATTTTA
**
79362899 TTGTTAATTTTTTATTATTTTAAAGGTAT
1 TTGTTAATTTTTTATTATTTTAAAAATAT
79362928 TTGTTAATTTTGTTATTATTTTAAAAATAT
1 TTGTTAATTTT-TTATTATTTTAAAAATAT
79362958 TTG
1 TTG
79362961 CTTGTTAACC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 11 0.37
30 19 0.63
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (29 bp):
TTGTTAATTTTTTATTATTTTAAAAATAT
Found at i:79363064 original size:18 final size:18
Alignment explanation
Indices: 79363043--79363081 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
79363033 GAAATATTTA
*
79363043 TTTGAT-GTTTTTAGTATT
1 TTTGATGGTTTATA-TATT
79363061 TTTGATGGTTTATATATT
1 TTTGATGGTTTATATATT
79363079 TTT
1 TTT
79363082 TTAAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.18, C:0.00, G:0.15, T:0.67
Consensus pattern (18 bp):
TTTGATGGTTTATATATT
Found at i:79363081 original size:19 final size:18
Alignment explanation
Indices: 79363036--79363082 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 18
79363026 TTGTTGAGAA
*
79363036 ATATTTATTTGATGTTTTT
1 ATATTT-TTTGATGTTTAT
79363055 AGTA-TTTTTGATGGTTTAT
1 A-TATTTTTTGAT-GTTTAT
79363074 ATATTTTTT
1 ATATTTTTT
79363083 TAAAATTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 8 0.33
19 14 0.58
20 2 0.08
ACGTcount: A:0.21, C:0.00, G:0.13, T:0.66
Consensus pattern (18 bp):
ATATTTTTTGATGTTTAT
Found at i:79363099 original size:12 final size:12
Alignment explanation
Indices: 79363084--79363117 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
79363074 ATATTTTTTT
*
79363084 AAAATTATATAA
1 AAAATAATATAA
79363096 AAAATAATATAA
1 AAAATAATATAA
*
79363108 AAATTAATAT
1 AAAATAATAT
79363118 GGGCGAGTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:79363645 original size:45 final size:45
Alignment explanation
Indices: 79363585--79363670 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 45
79363575 CATTGTCTAA
* *
79363585 TTAACTAAATTACATATTATATAATATAAATTATTTATACTAAAT
1 TTAACTAAATCACATAGTATATAATATAAATTATTTATACTAAAT
* * * * *
79363630 TTAAGTAAATCACATAGTATTTATTGTTAATTATTTATACT
1 TTAACTAAATCACATAGTATATAATATAAATTATTTATACT
79363671 TGGTGGAAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (45 bp):
TTAACTAAATCACATAGTATATAATATAAATTATTTATACTAAAT
Found at i:79368866 original size:58 final size:58
Alignment explanation
Indices: 79368774--79368890 Score: 207
Period size: 58 Copynumber: 2.0 Consensus size: 58
79368764 GTATAGGTCA
79368774 ATACTCTGACTATTTATTTTCTTCATCTTCGATGATGTTAGTAGAATGCACTAAGTAT
1 ATACTCTGACTATTTATTTTCTTCATCTTCGATGATGTTAGTAGAATGCACTAAGTAT
* * *
79368832 ATACTCTGACTATTTATTTTCTTTATCTTTGATGATGTTAGTAGAATGCATTAAGTAT
1 ATACTCTGACTATTTATTTTCTTCATCTTCGATGATGTTAGTAGAATGCACTAAGTAT
79368890 A
1 A
79368891 GGTTTACTAA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.28, C:0.13, G:0.14, T:0.45
Consensus pattern (58 bp):
ATACTCTGACTATTTATTTTCTTCATCTTCGATGATGTTAGTAGAATGCACTAAGTAT
Found at i:79376005 original size:79 final size:79
Alignment explanation
Indices: 79375849--79376024 Score: 216
Period size: 79 Copynumber: 2.2 Consensus size: 79
79375839 TGGATGATAA
* * *
79375849 CCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGTTCCGGGCAAGTCCCGAAGGCATTGGT
1 CCGGGCTAAGTCCCGAAGGCATTTGCACGAGTGACTAGTACCGGGCAAGTCCCGAAGGCATTGGA
79375914 GCGAGTTACTATAT
66 GCGAGTTACTATAT
** * *
79375928 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGCACGAGTGACTAGT-ACCGGGC-AAGTCCCGAAGGCATTG
79375992 GAGC-AG-TAGCTATAT
64 GAGCGAGTTA-CTATAT
**
79376007 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
79376025 TACTTGGTTG
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.20
79 49 0.58
80 19 0.22
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.22
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCACGAGTGACTAGTACCGGGCAAGTCCCGAAGGCATTGGA
GCGAGTTACTATAT
Found at i:79376022 original size:38 final size:40
Alignment explanation
Indices: 79375849--79376024 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
79375839 TGGATGATAA
** * *
79375849 CCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
79375889 CCGGGC-AAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
79375928 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
79375968 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
79376007 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
79376025 TACTTGGTTG
Statistics
Matches: 122, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
38 17 0.14
39 41 0.34
40 64 0.52
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:79384028 original size:40 final size:40
Alignment explanation
Indices: 79383928--79384143 Score: 291
Period size: 40 Copynumber: 5.5 Consensus size: 40
79383918 TGGATGATAA
* * *
79383928 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
79383968 CCGGGC-AAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
79384007 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
*
79384047 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
79384087 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
79384126 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
79384144 TACTTGGTTG
Statistics
Matches: 161, Mismatches: 10, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
38 17 0.11
39 44 0.27
40 98 0.61
41 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:79387551 original size:11 final size:11
Alignment explanation
Indices: 79387535--79387559 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
79387525 CTTCTAGTGT
79387535 CTATCATTTCA
1 CTATCATTTCA
79387546 CTATCATTTCA
1 CTATCATTTCA
79387557 CTA
1 CTA
79387560 GCAACTAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (11 bp):
CTATCATTTCA
Found at i:79392988 original size:20 final size:20
Alignment explanation
Indices: 79392965--79393009 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
79392955 CTTTTCCGTA
* *
79392965 TCAATAGTAATTCATTCATT
1 TCAACAGTAATTCATCCATT
*
79392985 TCAACATTAATTCATCCATT
1 TCAACAGTAATTCATCCATT
79393005 TCAAC
1 TCAAC
79393010 TTAACTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.22, G:0.02, T:0.40
Consensus pattern (20 bp):
TCAACAGTAATTCATCCATT
Found at i:79393204 original size:23 final size:23
Alignment explanation
Indices: 79393175--79393255 Score: 112
Period size: 23 Copynumber: 3.6 Consensus size: 23
79393165 CGGAGCTAAT
79393175 AAACAGTAAGCTCTATTGAGCTG
1 AAACAGTAAGCTCTATTGAGCTG
*
79393198 AAACAGTAAGCTCTATCGAGCTG
1 AAACAGTAAGCTCTATTGAGCTG
79393221 -AACAGTAAGCTC-ATATGAGCTG
1 AAACAGTAAGCTCTAT-TGAGCTG
**
79393243 AATTAGTAAGCTC
1 AAACAGTAAGCTC
79393256 CAATTAGTTG
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
21 2 0.04
22 18 0.35
23 32 0.62
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (23 bp):
AAACAGTAAGCTCTATTGAGCTG
Found at i:79396685 original size:40 final size:40
Alignment explanation
Indices: 79396636--79396887 Score: 308
Period size: 40 Copynumber: 6.3 Consensus size: 40
79396626 TCTTCGGAAT
* *
79396636 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
79396675 TTAACCCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * * * *
79396715 TTAACCCGGGTATAGCAACTAGCACAAATGCCTTCAGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
79396755 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * * *
79396795 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * * *
79396835 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
79396875 TTAGCCCGGATAT
1 TTAGCCCGGATAT
79396888 CATTCAAATG
Statistics
Matches: 192, Mismatches: 20, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
39 3 0.02
40 189 0.98
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:79408061 original size:44 final size:44
Alignment explanation
Indices: 79407865--79408759 Score: 463
Period size: 44 Copynumber: 19.7 Consensus size: 44
79407855 CTTCGATCCA
* * * *
79407865 CTCCGCTGTAACTTCAGAGAGATAAGACTT-GTAGCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGA-TTCGTAGCTTTAATCTG
** ** * ** *
79407909 CTCCGTTGCAACTTCAGGGAGATAAGATTCACATCTACAATCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTCGTAGCTTTAATCTG
* * * *
79407953 CTCCTCTGTAACTTCGGGGAGATAAGATTTGTAACTCGTAGCTTTAATCTA
1 CTCCACTGCAACTTCAGGGAGATAAGA----T---TCGTAGCTTTAATCTG
* * * *
79408004 TTCCACTACAACTTCAGGGAGATAAGATTCGTGGCTTCAATCTAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTCGTAGCTTTAATCT-G
* * * * * *
79408049 -TCCACCGCAACTTCAAGGAGATAAGATTTGTAAAC-TCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTCGT-AGCTTTAATCTG
* * * *
79408092 CTCCACTACAACTTTAGGGAGATAAG-GTCTATAGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTC-GTAGCTTTAATCTG
* * * * *
79408136 CTCTACTGCAATTTCAGAGAGATAAGATTCGCTATCTTTAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTCG-TAGCTTTAATCTG
* * * *
79408181 GTCCATTGCAACTTCAGGGGGATAAGACTT-GTGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGA-TTCGTAGCTTTAATCTG
* * *
79408225 CTCCACTGTAACTTCAGGGAGATAAGATTCGCCATAATAACTTTAATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGATTCG------TAGCTTTAATCTG
* * * *
79408275 -TCCCACTGCAACTTCAGGG-GTATAGGATTTGT-GACTTCAATCTA
1 CT-CCACTGCAACTTCAGGGAG-ATAAGATTCGTAG-CTTTAATCTG
* * * *
79408319 CTCCACTGCAACTTCAGAGCGATAATACTT-GTAGCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGA-TTCGTAGCTTTAATCTG
* * * * ** *
79408363 CTTCGCTGCAACTTCA-GGAGATAAGATTCGCATCTACAATCTT
1 CTCCACTGCAACTTCAGGGAGATAAGATTCGTAGCTTTAATCTG
* *
79408406 CT-CATCTGCAACTTC-GAGGAGATAAGATTTGTAACTCATAGCTTTAATCTA
1 CTCCA-CTGCAACTTCAG-GGAGATAAGA----T---TCGTAGCTTTAATCTG
* * * * * * * *
79408457 TTCCACTACAACTTCAAGAAAATAAGATTCGCATCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTCGTAGCTTTAATCTG
* * * * *
79408501 CTCCACTGCAACTTCAGGAAGATTAGACTTAGCAGCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGA-TTCGTAGCTTTAATCTG
* *
79408546 CTCCACTGTAACTTCAGGGAGATAAGATTCGCTATAATGATTTCAATC--
1 CTCCACTGCAACTTCAGGGAGATAAGATTCG---T-A-GCTTT-AATCTG
* * **
79408594 CATCCCACTGCAAGTTCAGGG-GTATAGGATTTATAGCTTTAATCTG
1 C-T-CCACTGCAACTTCAGGGAG-ATAAGATTCGTAGCTTTAATCTG
* * * * *
79408640 CTCTACTGTAACTTCAGAGAGATAAGATTTGTTA-TTTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTCG-TAGCTTT-AATCTG
* * * ** *
79408685 CTCCACTACAACTTCAGGGAGATTAGACTTAGCGGCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGA-TTCGTAGCTTTAATCTG
*
79408730 CTCCACTGCAACTTCAGGAAGATAAGATTC
1 CTCCACTGCAACTTCAGGGAGATAAGATTC
79408760 ACCATAATGA
Statistics
Matches: 646, Mismatches: 145, Indels: 120
0.71 0.16 0.13
Matches are distributed among these distances:
42 3 0.00
43 37 0.06
44 314 0.49
45 146 0.23
46 9 0.01
47 3 0.00
48 4 0.01
49 7 0.01
50 60 0.09
51 61 0.09
52 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTCGTAGCTTTAATCTG
Found at i:79408218 original size:89 final size:93
Alignment explanation
Indices: 79408125--79408343 Score: 259
Period size: 94 Copynumber: 2.4 Consensus size: 93
79408115 AAGGTCTATA
* * * *
79408125 GCTTTAATCTGCTCTACTGCAATTTCAGAGAGATAAGATTCG-C-T-AT-CTTTAGTCTGGT-CC
1 GCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGCCATAATACTTTAATC-CGTCCC
*
79408185 ATTGCAACTTCAGGGGGATAAGACTTGTG
65 ACTGCAACTTCAGGGGGATAAGACTTGTG
* *
79408214 GCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATTCGCCATAATAACTTTAATCCGTCCC
1 GCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGCCATAAT-ACTTTAATCCGTCCC
* * *
79408279 ACTGCAACTTCAGGGGTATAGGATTTGTG
65 ACTGCAACTTCAGGGGGATAAGACTTGTG
* * * *
79408308 ACTTCAATCTACTCCACTGCAACTTCAGAGCGATAA
1 GCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAA
79408344 TACTTGTAGC
Statistics
Matches: 108, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
89 38 0.35
90 1 0.01
91 1 0.01
92 2 0.02
93 2 0.02
94 64 0.59
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (93 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTCGCCATAATACTTTAATCCGTCCCA
CTGCAACTTCAGGGGGATAAGACTTGTG
Found at i:79408317 original size:94 final size:89
Alignment explanation
Indices: 79407994--79408343 Score: 250
Period size: 89 Copynumber: 3.9 Consensus size: 89
79407984 TAACTCGTAG
** * * * *
79407994 CTTTAATCTATTCCACTACAACTTCAGGGAGATAAGA-TTCGTGGCTTCAATCTAG-TCCACCGC
1 CTTTAATCTCGTCCACTGCAACTTCAGGGGGATAAGACTT-GTGACTTCAATCT-GCTCCACTGC
* *
79408057 AACTTCA-AGGAGATAAGATTTG-TAAA
64 AACTTCAGA-GAGATAAGATTCGCT-AT
* * * * * * * * *
79408083 C-TCAACCT-GCTCCACTACAACTTTAGGGAGATAAG-GTCTAT-AGCTTTAATCTGCTCTACTG
1 CTTTAATCTCG-TCCACTGCAACTTCAGGGGGATAAGACT-TGTGA-CTTCAATCTGCTCCACTG
*
79408144 CAATTTCAGAGAGATAAGATTCGCTAT
63 CAACTTCAGAGAGATAAGATTCGCTAT
* * * * * *
79408171 CTTTAGTCTGGTCCATTGCAACTTCAGGGGGATAAGACTTGTGGCTTTAATCTGCTCCACTGTAA
1 CTTTAATCTCGTCCACTGCAACTTCAGGGGGATAAGACTTGTGACTTCAATCTGCTCCACTGCAA
*
79408236 CTTCAGGGAGATAAGATTCGCCATAAT
66 CTTCAGAGAGATAAGATTCG-C-T-AT
* * * *
79408263 AACTTTAATC-CGTCCCACTGCAACTTCAGGGGTATAGGATTTGTGACTTCAATCTACTCCACTG
1 --CTTTAATCTCGT-CCACTGCAACTTCAGGGGGATAAGACTTGTGACTTCAATCTGCTCCACTG
*
79408327 CAACTTCAGAGCGATAA
63 CAACTTCAGAGAGATAA
79408344 TACTTGTAGC
Statistics
Matches: 206, Mismatches: 38, Indels: 29
0.75 0.14 0.11
Matches are distributed among these distances:
87 1 0.00
88 65 0.32
89 68 0.33
90 3 0.01
91 1 0.00
92 2 0.01
93 2 0.01
94 64 0.31
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (89 bp):
CTTTAATCTCGTCCACTGCAACTTCAGGGGGATAAGACTTGTGACTTCAATCTGCTCCACTGCAA
CTTCAGAGAGATAAGATTCGCTAT
Found at i:79408546 original size:321 final size:324
Alignment explanation
Indices: 79407991--79408758 Score: 822
Period size: 321 Copynumber: 2.4 Consensus size: 324
79407981 TTGTAACTCG
* * * * *
79407991 TAGCTTTAATCTATTCCACTACAACTTCAGGGAGATAAGA-TTCG-TGGCTTCAATCTAG-TCCA
1 TAGCTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGACTT-GTTAGCTTCAATCT-GCTCCA
** * * * * * * * *
79408053 CCGCAACTTCAAGGAGATAAGA-TTTGTAAACT-CAACCTGCTCCACTACAACTTTAGGGAGATA
64 CTACAACTTCAGGGAGATAAGACTTAG-CAGCTACAATCTGCTCCACTGCAACTTCAGGAAGATA
* * * * *
79408116 AG----GT--CT-ATAGCTTTAATCTGCTCTACTGCAATTTCAGAGAGATAAGATTCGCTATCTT
128 AGATTTGTAACTCATAGCTTTAATCTACTCCACTACAACTTCAGAGAAATAAGATTCGCTATCTT
* * * * ** ** *
79408174 TAGTCTGGTCCATTGCAACTTCAGGGGGATAAGACTTGTGGCTTTAATCTGCTCCACTGTAACTT
193 CAATCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGCAGCTTCAATCTGCTCCACTGTAACTT
*
79408239 CAGGGAGATAAGATTCGCCATAATAACTTT-AATCCGTCCCACTGCAACTTCAGGGGTATAGGAT
258 CAGGGAGATAAGATTCGCCATAATAA-TTTCAATCCATCCCACTGCAACTTCAGGGGTATAGGAT
*
79408303 TTG
322 TTA
* * * *
79408306 T-GACTTCAATCTACTCCACTGCAACTTCAGAGCGATAATACTTG-TAGCTTCAATCTGCTTCGC
1 TAG-CTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGACTTGTTAGCTTCAATCTGCTCCAC
* * * *
79408369 TGCAACTTCA-GGAGATAAGA-TTCGCATCTACAATCTTCT-CATCTGCAACTTCGAGG-AGATA
65 TACAACTTCAGGGAGATAAGACTTAGCAGCTACAATCTGCTCCA-CTGCAACTTC-AGGAAGATA
*
79408430 AGATTTGTAACTCATAGCTTTAATCTATTCCACTACAACTTCA-AGAAAATAAGATTCGC-ATCT
128 AGATTTGTAACTCATAGCTTTAATCTACTCCACTACAACTTCAGAG-AAATAAGATTCGCTATCT
*
79408493 TCAATCTGCTCCACTGCAACTTCAGGAAGATTAGACTTAGCAGCTTCAATCTGCTCCACTGTAAC
192 TCAATCTGCTCCACTGCAACTTCAGGAAGATAAGACTT-GCAGCTTCAATCTGCTCCACTGTAAC
* * *
79408558 TTCAGGGAGATAAGATTCGCTATAATGATTTCAATCCATCCCACTGCAAGTTCAGGGGTATAGGA
256 TTCAGGGAGATAAGATTCGCCATAATAATTTCAATCCATCCCACTGCAACTTCAGGGGTATAGGA
79408623 TTTA
321 TTTA
* * * * * **
79408627 TAGCTTTAATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGTTATTTTCAATCTGCTCCACT
1 TAGCTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGACTTGTTAGCTTCAATCTGCTCCACT
* * *
79408692 ACAACTTCAGGGAGATTAGACTTAGCGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGA
66 ACAACTTCAGGGAGATAAGACTTAGCAGCTACAATCTGCTCCACTGCAACTTCAGGAAGATAAGA
79408757 TT
131 TT
79408759 CACCATAATG
Statistics
Matches: 375, Mismatches: 56, Indels: 35
0.80 0.12 0.08
Matches are distributed among these distances:
313 5 0.01
314 37 0.10
315 59 0.16
316 2 0.01
318 2 0.01
320 42 0.11
321 155 0.41
322 25 0.07
323 12 0.03
324 34 0.09
325 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (324 bp):
TAGCTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGACTTGTTAGCTTCAATCTGCTCCACT
ACAACTTCAGGGAGATAAGACTTAGCAGCTACAATCTGCTCCACTGCAACTTCAGGAAGATAAGA
TTTGTAACTCATAGCTTTAATCTACTCCACTACAACTTCAGAGAAATAAGATTCGCTATCTTCAA
TCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGCAGCTTCAATCTGCTCCACTGTAACTTCAG
GGAGATAAGATTCGCCATAATAATTTCAATCCATCCCACTGCAACTTCAGGGGTATAGGATTTA
Found at i:79408561 original size:227 final size:222
Alignment explanation
Indices: 79407865--79408570 Score: 639
Period size: 227 Copynumber: 3.1 Consensus size: 222
79407855 CTTCGATCCA
* * * * *
79407865 CTCCGCTGTAACTTCAGAGAGATAAGACTTGTAGCTTCAATCTGCTCCGTTGCAACTTCAGGGAG
1 CTCCACTGCAACTTCAGAGAGATAATACTTGTAGCTTCAATCTGCTTCGCTGCAACTTCA-GGAG
* * * * *
79407930 ATAAGATTCACATCTACAATCTACTCCTCTGTAACTTCGGGGAGATAAGATTTGTAACTCGTAGC
65 ATAAGATTCGCATCTACAATCTTCTCATCTGCAACTTCGAGGAGATAAGATTTGTAACTC-TAGC
*** *
79407995 TTTAATCTATTCCACTACAACTTCAGGGAGATAAGATTCGTGGCTTCAATCTAGTCCACCGCAAC
129 TTTAATCTATTCCACTACAACTTCAGGGAGATAAGATTCGCATCTTCAATCT-GTCCACTGCAAC
* * *
79408060 TTCAAGGAGATAAGATTTGTAAAC-TCAACCTG
193 TTC-AGGAGATTAGATTTG--AGCTTCAATCTG
* * * * * * *
79408092 CTCCACTACAACTTTAGGGAGATAAGGT-C-TATAGCTTTAATCTGC-TCTACTGCAATTTCAGA
1 CTCCACTGCAACTTCAGAGAGATAA--TACTTGTAGCTTCAATCTGCTTC-GCTGCAACTTCAG-
** * * *
79408154 GAGATAAGATTCGCTATCTTTAGTCTGGTC-CAT-TGCAACTTC-AGGGGGATAAGACTTG----
62 GAGATAAGATTCGC-ATCTACAATCT--TCTCATCTGCAACTTCGA-GGAGATAAGATTTGTAAC
* ** ** * *
79408212 --TGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATTCGCCATAATAACTTTAATCCG
123 TCTAGCTTTAATCTATTCCACTACAACTTCAGGGAGATAAGATTCG-C---AT--CTTCAATCTG
* * *
79408275 TCCCACTGCAACTTCAGG-GGTATAGGATTTGTGACTTCAATCTA
182 T-CCACTGCAACTTCAGGAGAT-TA-GATTTGAG-CTTCAATCTG
*
79408319 CTCCACTGCAACTTCAGAGCGATAATACTTGTAGCTTCAATCTGCTTCGCTGCAACTTCAGGAGA
1 CTCCACTGCAACTTCAGAGAGATAATACTTGTAGCTTCAATCTGCTTCGCTGCAACTTCAGGAGA
79408384 TAAGATTCGCATCTACAATCTTCTCATCTGCAACTTCGAGGAGATAAGATTTGTAACTCATAGCT
66 TAAGATTCGCATCTACAATCTTCTCATCTGCAACTTCGAGGAGATAAGATTTGTAACTC-TAGCT
* * *
79408449 TTAATCTATTCCACTACAACTTCAAGAAAATAAGATTCGCATCTTCAATCTGCTCCACTGCAACT
130 TTAATCTATTCCACTACAACTTCAGGGAGATAAGATTCGCATCTTCAATCTG-TCCACTGCAACT
*
79408514 TCAGGAAGATTAGACTTAGCAGCTTCAATCTG
194 TCAGG-AGATTAGA-TTTG-AGCTTCAATCTG
* *
79408546 CTCCACTGTAACTTCAGGGAGATAA
1 CTCCACTGCAACTTCAGAGAGATAA
79408571 GATTCGCTAT
Statistics
Matches: 373, Mismatches: 69, Indels: 74
0.72 0.13 0.14
Matches are distributed among these distances:
221 39 0.10
223 2 0.01
224 3 0.01
225 32 0.09
226 51 0.14
227 170 0.46
228 36 0.10
229 2 0.01
230 1 0.00
231 1 0.00
232 36 0.10
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (222 bp):
CTCCACTGCAACTTCAGAGAGATAATACTTGTAGCTTCAATCTGCTTCGCTGCAACTTCAGGAGA
TAAGATTCGCATCTACAATCTTCTCATCTGCAACTTCGAGGAGATAAGATTTGTAACTCTAGCTT
TAATCTATTCCACTACAACTTCAGGGAGATAAGATTCGCATCTTCAATCTGTCCACTGCAACTTC
AGGAGATTAGATTTGAGCTTCAATCTG
Found at i:79410543 original size:64 final size:64
Alignment explanation
Indices: 79410462--79410643 Score: 183
Period size: 64 Copynumber: 2.8 Consensus size: 64
79410452 AGACATTATG
* * *
79410462 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATATAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
79410526 ATGTAGCTAGGTCGCATGTGT-TTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGATA
79410590 A
64 A
* * * *
79410591 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
79410644 CGAACTATAT
Statistics
Matches: 95, Mismatches: 18, Indels: 11
0.77 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 22 0.23
64 37 0.39
65 33 0.35
66 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:79421286 original size:15 final size:15
Alignment explanation
Indices: 79421276--79421317 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
79421266 CGATAATATA
79421276 AATAACAATAATAAT
1 AATAACAATAATAAT
*
79421291 AATAACAATACTAAT
1 AATAACAATAATAAT
*
79421306 AATAATAATAAT
1 AATAACAATAAT
79421318 CTAAAATTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (15 bp):
AATAACAATAATAAT
Found at i:79421290 original size:3 final size:3
Alignment explanation
Indices: 79421276--79421317 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
79421266 CGATAATATA
* * *
79421276 AAT AAC AAT AAT AAT AAT AAC AAT ACT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
79421318 CTAAAATTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:79422494 original size:13 final size:13
Alignment explanation
Indices: 79422476--79422500 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79422466 TGTTATCCCT
79422476 TTTTTCTTGCTTG
1 TTTTTCTTGCTTG
79422489 TTTTTCTTGCTT
1 TTTTTCTTGCTT
79422501 TGCAGGTGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.12, T:0.72
Consensus pattern (13 bp):
TTTTTCTTGCTTG
Done.