Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 244 of 325
Found at i:79828739 original size:55 final size:56
Alignment explanation
Indices: 79828609--79828773 Score: 213
Period size: 55 Copynumber: 3.1 Consensus size: 56
79828599 TGTAAAAAAT
* *
79828609 TTATTC-TATATATTATTTTTA-TTTATGTAT-TATT-TATTATATTATT-TATATT
1 TTATTCATATATATTATTTTTATTTTAT-TATATATTATATTATTTTATTATATATA
* * *
79828661 TTATT-ATATATTTTATTTATATTTTATTATATATTATATCATTTTATTATATATA
1 TTATTCATATATATTATTTTTATTTTATTATATATTATATTATTTTATTATATATA
79828716 TTATTCAT-TATATTATTTTTATTTTATTATATATTATATTATTTTATTAT-T-TA
1 TTATTCATATATATTATTTTTATTTTATTATATATTATATTATTTTATTATATATA
79828769 TTATT
1 TTATT
79828774 TATTATTATG
Statistics
Matches: 99, Mismatches: 8, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
52 21 0.21
53 16 0.16
54 11 0.11
55 49 0.49
56 2 0.02
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.67
Consensus pattern (56 bp):
TTATTCATATATATTATTTTTATTTTATTATATATTATATTATTTTATTATATATA
Found at i:79829175 original size:18 final size:18
Alignment explanation
Indices: 79829152--79829186 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
79829142 ATCTCATAAA
79829152 TTATTTATTATTTTTATG
1 TTATTTATTATTTTTATG
*
79829170 TTATTTATTGTTTTTAT
1 TTATTTATTATTTTTAT
79829187 ATATTTGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (18 bp):
TTATTTATTATTTTTATG
Found at i:79832491 original size:47 final size:47
Alignment explanation
Indices: 79832437--79832841 Score: 684
Period size: 47 Copynumber: 8.6 Consensus size: 47
79832427 TATTTGAATA
79832437 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
79832484 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
79832531 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
79832580 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
79832627 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
79832674 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
79832721 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
79832768 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
79832815 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
79832842 TCCCGAAGGG
Statistics
Matches: 342, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 297 0.87
49 45 0.13
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:79834141 original size:46 final size:46
Alignment explanation
Indices: 79834085--79834390 Score: 142
Period size: 46 Copynumber: 6.5 Consensus size: 46
79834075 TATGTGTGCT
79834085 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCACAATATGAGAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCAGCCACAATATGAGAG-C
* * * **** * *
79834131 AGTGTAAGACATGCCTGGGGCAT-ACATCAGCGTTGAGACGAGAGC
1 AGTGTAAGACATGTCTGGGACATGGCATCAGCCACAATATGAGAGC
* * * * * *
79834176 TAATGTAAGACATGTCTAGGACAT-GCATCGGTCTCGAGATA-GACAAGC
1 -AGTGTAAGACATGTCTGGGACATGGCATCAGCCAC-A-ATATGA-GAGC
* * ** * *
79834224 TAGTGTAAGACCTGTCTGGGACATGGCGTCAG-C-TTAT-TGTGTGTC
1 -AGTGTAAGACATGTCTGGGACATGGCATCAGCCACAATATGAGAG-C
* * * *
79834269 AGTGTAAGACCTGTCTGGGACATAGCATC-GACACTGATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCAGCCAC--A-ATATGAGAG-C
* * ** * *
79834318 AGTGTAAGACCTGTCTAGGACATGGCATTGGCCTCACTATATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCAG-C-CACAATATGAGAG-C
79834367 AGTGTAAGACCATGTCTGGGACAT
1 AGTGTAAGA-CATGTCTGGGACAT
79834391 AGCGTCGGCA
Statistics
Matches: 195, Mismatches: 48, Indels: 30
0.71 0.18 0.11
Matches are distributed among these distances:
43 1 0.01
44 29 0.15
45 5 0.03
46 60 0.31
47 2 0.01
48 28 0.14
49 54 0.28
50 13 0.07
52 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATCAGCCACAATATGAGAGC
Found at i:79834340 original size:49 final size:49
Alignment explanation
Indices: 79834268--79834393 Score: 164
Period size: 49 Copynumber: 2.6 Consensus size: 49
79834258 TATTGTGTGT
* *
79834268 CAGTGTAAGACCTGTCTGGGACATAGCATCGACACTGA-TAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATAGCATCGAC-CTCACTAGATGAAAGC
* * * * *
79834317 CAGTGTAAGACCTGTCTAGGACATGGCATTGGCCTCACTATATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATAGCATCGACCTCACTAGATGAAAGC
79834366 CAGTGTAAGACCATGTCTGGGACATAGC
1 CAGTGTAAGACC-TGTCTGGGACATAGC
79834394 GTCGGCATCT
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
48 3 0.05
49 50 0.76
50 13 0.20
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.22
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATAGCATCGACCTCACTAGATGAAAGC
Found at i:79837847 original size:12 final size:12
Alignment explanation
Indices: 79837832--79837858 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
79837822 ACTATTTATT
79837832 TCACTTAGTTTC
1 TCACTTAGTTTC
79837844 TCACTTAGTTTC
1 TCACTTAGTTTC
79837856 TCA
1 TCA
79837859 AGTTCTAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.26, G:0.07, T:0.48
Consensus pattern (12 bp):
TCACTTAGTTTC
Found at i:79838516 original size:17 final size:17
Alignment explanation
Indices: 79838494--79838527 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
79838484 GTTGTTTTTG
* *
79838494 TGATTTGTATAATGTGA
1 TGATTTATAAAATGTGA
79838511 TGATTTATAAAATGTGA
1 TGATTTATAAAATGTGA
79838528 AATATTGATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (17 bp):
TGATTTATAAAATGTGA
Found at i:79838660 original size:21 final size:21
Alignment explanation
Indices: 79838634--79838673 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
79838624 TCACATGTCA
79838634 AAGTGAAAAAATGATTTTTTT
1 AAGTGAAAAAATGATTTTTTT
79838655 AAGTGAAAAAATGATTTTT
1 AAGTGAAAAAATGATTTTT
79838674 GTGGTCATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.15, T:0.40
Consensus pattern (21 bp):
AAGTGAAAAAATGATTTTTTT
Found at i:79838827 original size:47 final size:47
Alignment explanation
Indices: 79838719--79838829 Score: 159
Period size: 47 Copynumber: 2.4 Consensus size: 47
79838709 AAGGAGGAAG
* * * * * *
79838719 AAGTGGCAATTTATATGTAAAAGTGGTGGCTTGTCCATAATTTTATT
1 AAGTGGTAGTTTATCTGGAAAAGTGGTGGCTTGTCCACAATATTATT
*
79838766 AAGTGGTAGTTTATCTGGAAAAGTGGTGGCTTGTCTACAATATTATT
1 AAGTGGTAGTTTATCTGGAAAAGTGGTGGCTTGTCCACAATATTATT
79838813 AAGTGGTAGTTTATCTG
1 AAGTGGTAGTTTATCTG
79838830 CATTACTGTG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (47 bp):
AAGTGGTAGTTTATCTGGAAAAGTGGTGGCTTGTCCACAATATTATT
Found at i:79841445 original size:21 final size:21
Alignment explanation
Indices: 79841419--79841461 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
79841409 ACTTGTTAAG
* *
79841419 AGAAGAATTTCTCATTTTACT
1 AGAAGAATTGCTCATTTCACT
79841440 AGAAGAATTGCTCATTTCACT
1 AGAAGAATTGCTCATTTCACT
79841461 A
1 A
79841462 TGTATTTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (21 bp):
AGAAGAATTGCTCATTTCACT
Found at i:79845457 original size:7 final size:7
Alignment explanation
Indices: 79845445--79845470 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
79845435 TTTGGGTGTT
79845445 GTTTTAG
1 GTTTTAG
79845452 GTTTTAG
1 GTTTTAG
79845459 GTTTTAG
1 GTTTTAG
79845466 GTTTT
1 GTTTT
79845471 GAAGTTGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.27, T:0.62
Consensus pattern (7 bp):
GTTTTAG
Found at i:79856466 original size:13 final size:14
Alignment explanation
Indices: 79856448--79856489 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
79856438 TTTTAATTTT
79856448 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
79856461 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
79856476 ATTTTAAATAATAT
1 ATTTT-AATAATAT
79856490 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:79856474 original size:16 final size:16
Alignment explanation
Indices: 79856452--79856488 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
79856442 AATTTTATTT
79856452 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
79856469 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
79856484 TAATA
1 TAATA
79856489 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:79857038 original size:14 final size:14
Alignment explanation
Indices: 79857018--79857060 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
79857008 TTTTCAGAAA
79857018 AATAAATCATTTTC
1 AATAAATCATTTTC
*
79857032 TATAAATCATTTTC
1 AATAAATCATTTTC
* *
79857046 AAGAAATAATTTTC
1 AATAAATCATTTTC
79857060 A
1 A
79857061 GTGAAACAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (14 bp):
AATAAATCATTTTC
Found at i:79857154 original size:19 final size:19
Alignment explanation
Indices: 79857132--79857202 Score: 56
Period size: 19 Copynumber: 3.8 Consensus size: 19
79857122 TTAAAATATA
79857132 ATTTTTAATATTTTTATTG
1 ATTTTTAATATTTTTATTG
* **
79857151 ATTTGTTGA-ATTTTTATAA
1 ATTT-TTAATATTTTTATTG
* *
79857170 ATTTTCATTATTTTT-TTG
1 ATTTTTAATATTTTTATTG
**
79857188 GGTTTTAATATTTTT
1 ATTTTTAATATTTTT
79857203 TACAATTTTT
Statistics
Matches: 38, Mismatches: 12, Indels: 5
0.69 0.22 0.09
Matches are distributed among these distances:
18 13 0.34
19 22 0.58
20 3 0.08
ACGTcount: A:0.24, C:0.01, G:0.08, T:0.66
Consensus pattern (19 bp):
ATTTTTAATATTTTTATTG
Found at i:79859430 original size:15 final size:15
Alignment explanation
Indices: 79859390--79859424 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
79859380 ATATTTTTAG
* *
79859390 TTATTGTTATTAGTT
1 TTATTATTATTACTT
79859405 TTATTATTATTACTT
1 TTATTATTATTACTT
79859420 TTATT
1 TTATT
79859425 TCTATTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.23, C:0.03, G:0.06, T:0.69
Consensus pattern (15 bp):
TTATTATTATTACTT
Found at i:79860991 original size:17 final size:18
Alignment explanation
Indices: 79860970--79861009 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
79860960 GGAGTGTAGG
*
79860970 GTTGGACGGAGATTGTGT
1 GTTGGACGGAGATGGTGT
79860988 -TTGGACGGAGATGGTGT
1 GTTGGACGGAGATGGTGT
79861005 GTTGG
1 GTTGG
79861010 CTGGATGGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.15, C:0.05, G:0.47, T:0.33
Consensus pattern (18 bp):
GTTGGACGGAGATGGTGT
Found at i:79861984 original size:3 final size:3
Alignment explanation
Indices: 79861976--79862004 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
79861966 GTGAGGGTTT
79861976 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
79862005 AAAGGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:79863765 original size:17 final size:18
Alignment explanation
Indices: 79863743--79863779 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
79863733 CCATTTTTTC
79863743 AATTAAAAAAATAT-TAA
1 AATTAAAAAAATATATAA
79863760 AATTAAAAAAATATATAA
1 AATTAAAAAAATATATAA
79863778 AA
1 AA
79863780 AATTCAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (18 bp):
AATTAAAAAAATATATAA
Found at i:79863921 original size:12 final size:12
Alignment explanation
Indices: 79863904--79863929 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
79863894 TTAAAAACAC
79863904 ATGAAACATGAT
1 ATGAAACATGAT
79863916 ATGAAACATGAT
1 ATGAAACATGAT
79863928 AT
1 AT
79863930 ATTACTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.15, T:0.27
Consensus pattern (12 bp):
ATGAAACATGAT
Found at i:79880491 original size:30 final size:30
Alignment explanation
Indices: 79880457--79880517 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
79880447 TCATTTACTC
*
79880457 AAACTTTT-CAAAAATTACATTTTTGCCCCT
1 AAACTTTTAC-AAAATTACACTTTTGCCCCT
* *
79880487 AAACTTTTACATATTTACACTTTTGCCCCT
1 AAACTTTTACAAAATTACACTTTTGCCCCT
79880517 A
1 A
79880518 GGCTTGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.31, C:0.25, G:0.03, T:0.41
Consensus pattern (30 bp):
AAACTTTTACAAAATTACACTTTTGCCCCT
Found at i:79881820 original size:11 final size:12
Alignment explanation
Indices: 79881806--79881856 Score: 54
Period size: 11 Copynumber: 4.3 Consensus size: 12
79881796 AACCAAAAAG
79881806 AAAAGA-AGAAA
1 AAAAGAGAGAAA
79881817 AAAA-AGAGAAA
1 AAAAGAGAGAAA
*
79881828 GAAAGA-AGAAA
1 AAAAGAGAGAAA
79881839 GAAAAGAGAGGAAA
1 -AAAAGAGA-GAAA
79881853 AAAA
1 AAAA
79881857 TGATGGAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
10 1 0.03
11 17 0.52
12 6 0.18
13 5 0.15
14 4 0.12
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAAGAGAGAAA
Found at i:79881832 original size:22 final size:23
Alignment explanation
Indices: 79881802--79881847 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
79881792 AAAAAACCAA
79881802 AAAGAAAAGAAGAAAAAAAAGAG
1 AAAGAAAAGAAGAAAAAAAAGAG
*
79881825 AAAG-AAAGAAGAAAGAAAAGAG
1 AAAGAAAAGAAGAAAAAAAAGAG
79881847 A
1 A
79881848 GGAAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (23 bp):
AAAGAAAAGAAGAAAAAAAAGAG
Found at i:79881833 original size:19 final size:17
Alignment explanation
Indices: 79881800--79881856 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 17
79881790 AAAAAAAACC
79881800 AAAAAGAAAAGAAGAAA
1 AAAAAGAAAAGAAGAAA
*
79881817 AAAAAGAGAAAGAA-AGA
1 AAAAAGA-AAAGAAGAAA
*
79881834 AGAAAGAAAAGAGAGGAAA
1 AAAAAGAAAAGA-A-GAAA
79881853 AAAA
1 AAAA
79881857 TGATGGAGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
16 5 0.16
17 16 0.50
18 6 0.19
19 5 0.16
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAGAAGAAA
Found at i:79884325 original size:22 final size:24
Alignment explanation
Indices: 79884300--79884348 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
79884290 GAAAAGCCAA
79884300 AAAG-AAGAA-AAAAAAAAAAGAG
1 AAAGAAAGAAGAAAAAAAAAAGAG
* *
79884322 AAAGAAAGAAGAAAGAAAAGAGAG
1 AAAGAAAGAAGAAAAAAAAAAGAG
79884346 AAA
1 AAA
79884349 AAAATGATGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 4 0.17
23 5 0.22
24 14 0.61
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (24 bp):
AAAGAAAGAAGAAAAAAAAAAGAG
Found at i:79885939 original size:19 final size:19
Alignment explanation
Indices: 79885885--79885939 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
79885875 TATGTCAAGT
*
79885885 TAAT-AAACAATTCAAAAA
1 TAATAAAACAAATCAAAAA
* *
79885903 TTATAAAA-ATAATAAAAAA
1 TAATAAAACA-AATCAAAAA
*
79885922 TAATAAAACAAGTCAAAA
1 TAATAAAACAAATCAAAA
79885940 TTTAAAAATA
Statistics
Matches: 28, Mismatches: 6, Indels: 5
0.72 0.15 0.13
Matches are distributed among these distances:
18 4 0.14
19 23 0.82
20 1 0.04
ACGTcount: A:0.69, C:0.07, G:0.02, T:0.22
Consensus pattern (19 bp):
TAATAAAACAAATCAAAAA
Found at i:79885957 original size:37 final size:38
Alignment explanation
Indices: 79885885--79885979 Score: 99
Period size: 37 Copynumber: 2.6 Consensus size: 38
79885875 TATGTCAAGT
* *
79885885 TAAT-AAACAATTCAAAAATTATAAAAATAATAAAAAA
1 TAATAAAACAAGTCAAAAATTATAAAAATAAAAAAAAA
*
79885922 TAATAAAACAAGTC-AAAATT-TAAAAATATAAAAAAAC
1 TAATAAAACAAGTCAAAAATTATAAAAATA-AAAAAAAA
* * *
79885959 TCATAAAA-AATTTAAAAATTA
1 TAATAAAACAAGTCAAAAATTA
79885980 GTATGAAATA
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
36 11 0.23
37 29 0.60
38 8 0.17
ACGTcount: A:0.67, C:0.06, G:0.01, T:0.25
Consensus pattern (38 bp):
TAATAAAACAAGTCAAAAATTATAAAAATAAAAAAAAA
Found at i:79889255 original size:3 final size:3
Alignment explanation
Indices: 79889240--79889279 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
79889230 TATTAGCCAA
*
79889240 ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
79889280 CCATTATGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:79889439 original size:3 final size:3
Alignment explanation
Indices: 79889431--79889677 Score: 66
Period size: 3 Copynumber: 83.0 Consensus size: 3
79889421 ATTTTCTACT
* * * *
79889431 TTA TTA TTA TTA TTA TTA TTA TCT- TTA TTA ATA -CA TTA CTA GTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
* * *** * * *
79889475 TTT TTA TTA TCA TTA CCC TTA TTA ATA -TA TTA GTA TT- TTC TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
79889521 GTAA TCTA TTA TTA TTC TTA TTA GTGTA TTA TTA TT- TCCTA TTTA TCA
1 -TTA T-TA TTA TTA TTA TTA TTA -T-TA TTA TTA TTA T--TA -TTA TTA
* * * * *
79889569 -TA TTA TTG TTG TTA TTA GTA TGTA -TA TTA TT- TT- TTC CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
* * * * ** * *
79889611 TTA TTA TTA CTA ATA TCA CTA TTA GCA TT- TT- TTA TTA CTG TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
79889657 TTA TTA TTT TTG TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
79889678 ATTTTAATTC
Statistics
Matches: 175, Mismatches: 51, Indels: 36
0.67 0.19 0.14
Matches are distributed among these distances:
2 18 0.10
3 142 0.81
4 12 0.07
5 2 0.01
6 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.05, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:79889553 original size:23 final size:21
Alignment explanation
Indices: 79889492--79889557 Score: 69
Period size: 23 Copynumber: 3.0 Consensus size: 21
79889482 TATCATTACC
* *
79889492 CTTATTAATATATTAGTATTTT
1 CTTATTAGT-TATTATTATTTT
*
79889514 CTTATTAGTAATCTATTATTATT
1 CTTATTAGTTAT-TATTATT-TT
79889537 CTTATTAGTGTATTATTATTT
1 CTTATTAGT-TATTATTATTT
79889558 CCTATTTATC
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
21 2 0.05
22 15 0.41
23 18 0.49
24 2 0.05
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (21 bp):
CTTATTAGTTATTATTATTTT
Found at i:79894034 original size:25 final size:25
Alignment explanation
Indices: 79894006--79894058 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
79893996 ATTATAGGGT
* *
79894006 TAGATAGCATTTATCGACCCTACGA
1 TAGATAGCATTCACCGACCCTACGA
79894031 TAGATAGCATTCACCGACCCTACGA
1 TAGATAGCATTCACCGACCCTACGA
79894056 TAG
1 TAG
79894059 GCCCACAGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (25 bp):
TAGATAGCATTCACCGACCCTACGA
Found at i:79894234 original size:72 final size:72
Alignment explanation
Indices: 79894110--79894254 Score: 202
Period size: 72 Copynumber: 2.0 Consensus size: 72
79894100 ATTTCAGTAT
** * *
79894110 TATGGGCCCACATGCCCAGATTAGCCTTGCCCGTGTGGCCCACACGGTCTGACCCAATAATCGAC
1 TATGGGCCCACACACCCAGATTAGCATTGCCCGTATGGCCCACACGGTCTGACCCAATAATCGAC
79894175 ACGCCCG
66 ACGCCCG
* * *
79894182 TATGGGCCCACACATCCAGATTGGCATTGCCCGTATGGCCCACA-TGTCCTGACCCAATAATCGA
1 TATGGGCCCACACACCCAGATTAGCATTGCCCGTATGGCCCACACGGT-CTGACCCAATAATCGA
*
79894246 CATGCCCG
65 CACGCCCG
79894254 T
1 T
79894255 GTAAGCCCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
71 2 0.03
72 62 0.97
ACGTcount: A:0.22, C:0.36, G:0.22, T:0.20
Consensus pattern (72 bp):
TATGGGCCCACACACCCAGATTAGCATTGCCCGTATGGCCCACACGGTCTGACCCAATAATCGAC
ACGCCCG
Found at i:79894436 original size:82 final size:82
Alignment explanation
Indices: 79894333--79894501 Score: 230
Period size: 82 Copynumber: 2.1 Consensus size: 82
79894323 CTCTAGCCAT
* * * * * * * *
79894333 CACATGACCGTTTCTTACGCACAGCCTGGCCTTCGTCGATCATACGGCCGTGTCATCACACACGG
1 CACACGACCGTGTCTTACGCACAACCTAGCCTTCGTCGATCACACGACCGTCTCATCACACACGA
79894398 CCTAACACACGGCCCAC
66 CCTAACACACGGCCCAC
* * *
79894415 CACACGACCGTGTCTTGCGCACAACCTAGCCTTCGTCGATCACACGATCGTCTCGTCACACACGA
1 CACACGACCGTGTCTTACGCACAACCTAGCCTTCGTCGATCACACGACCGTCTCATCACACACGA
*
79894480 CCTACCACACGGCCCAC
66 CCTAACACACGGCCCAC
79894497 CACAC
1 CACAC
79894502 AGTACTGTGG
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
82 75 1.00
ACGTcount: A:0.23, C:0.41, G:0.18, T:0.18
Consensus pattern (82 bp):
CACACGACCGTGTCTTACGCACAACCTAGCCTTCGTCGATCACACGACCGTCTCATCACACACGA
CCTAACACACGGCCCAC
Found at i:79896580 original size:49 final size:49
Alignment explanation
Indices: 79896317--79896588 Score: 187
Period size: 49 Copynumber: 5.7 Consensus size: 49
79896307 TAATTTGTGT
*
79896317 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGG---CATTGAGACGAGT-
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGACTCAATGAG--GA-TA
* ** * *
79896365 GCCAGTGTAAGA-CATGTCCGGGACAT-GCATCGGCCTCAATAAGGATA
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGACTCAATGAGGATA
* * * * *
79896412 GCCAGTGTAA-AACATGTTTAGGACGT-GCATC-GACT--ATGA-GACA
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGACTCAATGAGGATA
* ** * * *
79896455 TG-TCAGTGTAAGACCATGTCTGGGACATGGCAT-TAACATAAAT-ACGCAAGA
1 -GCT-AGTGTAAGACCATGTCTAGGACATGGCATCGGAC-TCAATGA-G-GATA
* * *
79896506 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTCTCGATGAGGATA
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGACTCAATGAGGATA
79896555 GCTAGTGTAAGACCATGTCTAGGACATGGCATCG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCG
79896589 ACAACTTAAC
Statistics
Matches: 177, Mismatches: 28, Indels: 37
0.73 0.12 0.15
Matches are distributed among these distances:
43 3 0.02
44 11 0.06
45 12 0.07
46 18 0.10
47 40 0.23
48 12 0.07
49 42 0.24
50 34 0.19
51 5 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGACTCAATGAGGATA
Found at i:79898164 original size:28 final size:27
Alignment explanation
Indices: 79898113--79898191 Score: 104
Period size: 28 Copynumber: 2.9 Consensus size: 27
79898103 CGTTTTTGGT
* *
79898113 AAAACGCCGCTAAAAATAGAGCAATAG
1 AAAACGCAGCTAAAAACAGAGCAATAG
*
79898140 AAAACGTAGCTAAAAAACAGAGCAATAG
1 AAAACGCAGCT-AAAAACAGAGCAATAG
*
79898168 AAAACGCCGCTAAAAACTAGAGCA
1 AAAACGCAGCTAAAAAC-AGAGCA
79898192 TTAGCGGCGC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 15 0.33
28 30 0.67
ACGTcount: A:0.53, C:0.19, G:0.18, T:0.10
Consensus pattern (27 bp):
AAAACGCAGCTAAAAACAGAGCAATAG
Found at i:79898303 original size:54 final size:54
Alignment explanation
Indices: 79898245--79898352 Score: 119
Period size: 54 Copynumber: 2.0 Consensus size: 54
79898235 CCTAAAACTC
* * *
79898245 TAAACCCA-AAAAAATAATAAACATTCATCTATAACCCCTAAAACACTAAACCCT
1 TAAA-CCATAAAAAATAATAAACACTAAACTATAACCCCTAAAACACTAAACCCT
* * ** * *
79898299 TAAACTATAAAAACTCCTAAACACTAAACTATAACCCTTAAAACCCTAAACCCT
1 TAAACCATAAAAAATAATAAACACTAAACTATAACCCCTAAAACACTAAACCCT
79898353 AAAAAACATC
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
53 2 0.05
54 42 0.95
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (54 bp):
TAAACCATAAAAAATAATAAACACTAAACTATAACCCCTAAAACACTAAACCCT
Found at i:79899677 original size:8 final size:8
Alignment explanation
Indices: 79899641--79899753 Score: 122
Period size: 8 Copynumber: 13.9 Consensus size: 8
79899631 TTTATATGAT
79899641 AATTTAAA
1 AATTTAAA
79899649 AATTATAAA
1 AATT-TAAA
79899658 AATCTTCAAAA
1 AAT-TT--AAA
79899669 AATTTAAA
1 AATTTAAA
79899677 AA-TTAAA
1 AATTTAAA
*
79899684 AATTAAAA
1 AATTTAAA
*
79899692 AATTAAAA
1 AATTTAAA
79899700 AATTTAAA
1 AATTTAAA
79899708 AA-TTAAA
1 AATTTAAA
*
79899715 AACTTAAA
1 AATTTAAA
*
79899723 AACTTAAA
1 AATTTAAA
*
79899731 AACTTAAA
1 AATTTAAA
*
79899739 AACTTAAA
1 AATTTAAA
79899747 AATTTAA
1 AATTTAA
79899754 TATTTAATAT
Statistics
Matches: 96, Mismatches: 3, Indels: 12
0.86 0.03 0.11
Matches are distributed among these distances:
7 14 0.15
8 65 0.68
9 8 0.08
10 3 0.03
11 6 0.06
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (8 bp):
AATTTAAA
Found at i:79905126 original size:23 final size:23
Alignment explanation
Indices: 79905099--79905183 Score: 118
Period size: 23 Copynumber: 3.7 Consensus size: 23
79905089 AAAGTGCTGC
79905099 AAATTGAAGTGTTTAAATGTTGT
1 AAATTGAAGTGTTTAAATGTTGT
*
79905122 AAATTGAAGTGCTTAAATGTTGT
1 AAATTGAAGTGTTTAAATGTTGT
* *
79905145 AAATTGAAGTGTTTTAA-GTACTGC
1 AAATTGAAGTGTTTAAATGT--TGT
79905169 AAATTGAAGTGTTTA
1 AAATTGAAGTGTTTA
79905184 GCTGCGGGAA
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
22 2 0.04
23 37 0.67
24 16 0.29
ACGTcount: A:0.35, C:0.04, G:0.21, T:0.40
Consensus pattern (23 bp):
AAATTGAAGTGTTTAAATGTTGT
Found at i:79905172 original size:24 final size:23
Alignment explanation
Indices: 79905087--79905183 Score: 115
Period size: 23 Copynumber: 4.1 Consensus size: 23
79905077 CCCTACTAAA
*
79905087 TTAAAGTGCTGCAAATTGAAGTGT
1 TTAAA-TGTTGCAAATTGAAGTGT
* *
79905111 TTAAATGTTGTAAATTGAAGTGC
1 TTAAATGTTGCAAATTGAAGTGT
*
79905134 TTAAATGTTGTAAATTGAAGTGT
1 TTAAATGTTGCAAATTGAAGTGT
*
79905157 TTTAA-GTACTGCAAATTGAAGTGT
1 TTAAATGT--TGCAAATTGAAGTGT
79905181 TTA
1 TTA
79905184 GCTGCGGGAA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
22 2 0.03
23 41 0.64
24 21 0.33
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.39
Consensus pattern (23 bp):
TTAAATGTTGCAAATTGAAGTGT
Found at i:79905628 original size:19 final size:19
Alignment explanation
Indices: 79905605--79905651 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
79905595 ATTTAATCTA
*
79905605 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
79905623 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
79905643 ATTTTTATT
1 ATTTTTATT
79905652 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:79914389 original size:30 final size:30
Alignment explanation
Indices: 79914355--79914415 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
79914345 TCCTTAACTC
79914355 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
79914385 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
79914415 A
1 A
79914416 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:79915451 original size:13 final size:13
Alignment explanation
Indices: 79915433--79915457 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79915423 TGGCCGTGTG
79915433 AAAGGACACGGGC
1 AAAGGACACGGGC
79915446 AAAGGACACGGG
1 AAAGGACACGGG
79915458 TGTGTGTCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.20, G:0.40, T:0.00
Consensus pattern (13 bp):
AAAGGACACGGGC
Found at i:79922785 original size:11 final size:11
Alignment explanation
Indices: 79922769--79922793 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
79922759 GTTAGCATAT
79922769 ACAAGCAAAAA
1 ACAAGCAAAAA
79922780 ACAAGCAAAAA
1 ACAAGCAAAAA
79922791 ACA
1 ACA
79922794 CTTTACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.20, G:0.08, T:0.00
Consensus pattern (11 bp):
ACAAGCAAAAA
Found at i:79928509 original size:49 final size:49
Alignment explanation
Indices: 79928369--79928510 Score: 185
Period size: 49 Copynumber: 2.9 Consensus size: 49
79928359 AACATCGACT
** *
79928369 GCCAACCTAGTTAATAACTAACATGTCCTACCAGTGGCCCAACATACAC
1 GCCAACCTAGTTAGCAACTAACATGTCCTACCAGTGGCCCATCATACAC
* *
79928418 GCCAACCTAGTTAGCAACTAACATGTCCTACAAGTGGCCCATCATGCAC
1 GCCAACCTAGTTAGCAACTAACATGTCCTACCAGTGGCCCATCATACAC
* * * * * *
79928467 TCCCACCTGGTTAGCAGCTAATATGTCCTACCAGTGGTCCATCA
1 GCCAACCTAGTTAGCAACTAACATGTCCTACCAGTGGCCCATCA
79928511 CATCTGTCAT
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 81 1.00
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (49 bp):
GCCAACCTAGTTAGCAACTAACATGTCCTACCAGTGGCCCATCATACAC
Found at i:79951173 original size:22 final size:23
Alignment explanation
Indices: 79951142--79951184 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
79951132 GGTTGAACTT
79951142 GATAGGAAAAACACGGACGTGGG
1 GATAGGAAAAACACGGACGTGGG
* *
79951165 GATA-GAAAACCACGGGCGTG
1 GATAGGAAAAACACGGACGTG
79951185 CCAGGGACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.37, C:0.16, G:0.37, T:0.09
Consensus pattern (23 bp):
GATAGGAAAAACACGGACGTGGG
Found at i:79953208 original size:6 final size:6
Alignment explanation
Indices: 79953192--79953266 Score: 75
Period size: 6 Copynumber: 12.3 Consensus size: 6
79953182 CTTTTTTTTA
* *
79953192 TTTATT CTTATT TTTA-T TTTA-T TTTATT TTATTTT ATTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TT-TATT -TTTATT TTTATT
79953240 TTTATT TTTA-T TTTATTAT TTTATT TT
1 TTTATT TTTATT TTTA-T-T TTTATT TT
79953267 GAAAGACATA
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
5 15 0.25
6 30 0.51
7 7 0.12
8 7 0.12
ACGTcount: A:0.19, C:0.01, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:79953213 original size:5 final size:5
Alignment explanation
Indices: 79953183--79953266 Score: 88
Period size: 5 Copynumber: 16.8 Consensus size: 5
79953173 TGAATCCTCC
79953183 TTTT- TTTTA -TTTA TTCTTA TTTTTA TTTTA TTTTA TTTTA TTTTA -TTTA
1 TTTTA TTTTA TTTTA TT-TTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
79953232 TTTTTA TTTTTA TTTTTA TTTTA --TTA TTTTA TTTT
1 -TTTTA -TTTTA -TTTTA TTTTA TTTTA TTTTA TTTT
79953267 GAAAGACATA
Statistics
Matches: 72, Mismatches: 0, Indels: 15
0.83 0.00 0.17
Matches are distributed among these distances:
3 3 0.04
4 12 0.17
5 33 0.46
6 22 0.31
7 2 0.03
ACGTcount: A:0.18, C:0.01, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:79953239 original size:36 final size:37
Alignment explanation
Indices: 79953183--79953265 Score: 129
Period size: 36 Copynumber: 2.4 Consensus size: 37
79953173 TGAATCCTCC
79953183 TTTT-TTTTATTTATTCTTATTTTTA-TTTTATTTTA
1 TTTTATTTTATTTATTCTTATTTTTATTTTTATTTTA
*
79953218 TTTTATTTTATTTATTTTTATTTTTATTTTTATTTTA
1 TTTTATTTTATTTATTCTTATTTTTATTTTTATTTTA
79953255 --TTATTTTATTT
1 TTTTATTTTATTT
79953266 TGAAAGACAT
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
35 15 0.33
36 20 0.44
37 10 0.22
ACGTcount: A:0.18, C:0.01, G:0.00, T:0.81
Consensus pattern (37 bp):
TTTTATTTTATTTATTCTTATTTTTATTTTTATTTTA
Found at i:79953298 original size:24 final size:24
Alignment explanation
Indices: 79953271--79953318 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
79953261 TATTTTGAAA
79953271 GACATATCTATATTAGTAAATTTT
1 GACATATCTATATTAGTAAATTTT
79953295 GACATATCTATATTAGTAAATTTT
1 GACATATCTATATTAGTAAATTTT
79953319 ACTTTTTTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (24 bp):
GACATATCTATATTAGTAAATTTT
Found at i:79956138 original size:13 final size:13
Alignment explanation
Indices: 79956122--79956154 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
79956112 TTTAATTAAA
*
79956122 TTAGTTAATTAGT
1 TTAGATAATTAGT
79956135 TTAGATAATTAGT
1 TTAGATAATTAGT
79956148 TTA-ATAA
1 TTAGATAA
79956155 ACAAATTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:79959687 original size:47 final size:47
Alignment explanation
Indices: 79959611--79959777 Score: 228
Period size: 47 Copynumber: 3.5 Consensus size: 47
79959601 CTTCGGGACT
* * * * * *
79959611 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
79959658 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
79959704 TCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
79959752 TATCACATATATATACACTTTCACAT
1 TATCAC--ATATATACACTTTCACAT
79959778 CACAATTATC
Statistics
Matches: 107, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
46 3 0.03
47 84 0.79
48 2 0.02
49 18 0.17
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:79968005 original size:23 final size:22
Alignment explanation
Indices: 79967976--79968031 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
79967966 CGGCAGCAAA
*
79967976 GAAAAAGAAAATAAGAGAAGAAG
1 GAAAAAGAAAA-AAGAGAAAAAG
* *
79967999 GATAAAGCGAAAAAGAGAAAAAG
1 GAAAAAG-AAAAAAGAGAAAAAG
79968022 GAAAAAGAAA
1 GAAAAAGAAA
79968032 GAAAAAAATG
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
22 2 0.07
23 22 0.81
24 3 0.11
ACGTcount: A:0.70, C:0.02, G:0.25, T:0.04
Consensus pattern (22 bp):
GAAAAAGAAAAAAGAGAAAAAG
Found at i:79968018 original size:8 final size:8
Alignment explanation
Indices: 79967975--79968029 Score: 53
Period size: 8 Copynumber: 7.1 Consensus size: 8
79967965 CCGGCAGCAA
79967975 AGAAAAAG
1 AGAAAAAG
79967983 A-AAATAAG
1 AGAAA-AAG
*
79967991 AGAAGAAG
1 AGAAAAAG
*
79967999 -GATAAAG
1 AGAAAAAG
*
79968006 CGAAAAAG
1 AGAAAAAG
79968014 AGAAAAAG
1 AGAAAAAG
79968022 -GAAAAAG
1 AGAAAAAG
79968029 A
1 A
79968030 AAGAAAAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
7 15 0.39
8 21 0.55
9 2 0.05
ACGTcount: A:0.69, C:0.02, G:0.25, T:0.04
Consensus pattern (8 bp):
AGAAAAAG
Found at i:79968027 original size:15 final size:16
Alignment explanation
Indices: 79967975--79968029 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 16
79967965 CCGGCAGCAA
79967975 AGAAAAAGA-AAATAAG
1 AGAAAAAGAGAAA-AAG
* *
79967991 AGAAGAAG-GATAAAG
1 AGAAAAAGAGAAAAAG
*
79968006 CGAAAAAGAGAAAAAG
1 AGAAAAAGAGAAAAAG
79968022 -GAAAAAGA
1 AGAAAAAGA
79968030 AAGAAAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
15 17 0.53
16 15 0.47
ACGTcount: A:0.69, C:0.02, G:0.25, T:0.04
Consensus pattern (16 bp):
AGAAAAAGAGAAAAAG
Found at i:79972436 original size:28 final size:28
Alignment explanation
Indices: 79972405--79972499 Score: 138
Period size: 28 Copynumber: 3.4 Consensus size: 28
79972395 TCACCACAGG
79972405 CTATTCTTTTCAAAGTTTGCCACAAATG-
1 CTATTCTTTTCAAAGTTTGCCACAAA-GA
* *
79972433 CTATTCTTTTCATAGTTCGCCACAAAGA
1 CTATTCTTTTCAAAGTTTGCCACAAAGA
* *
79972461 CTATTCTTTTTAGAGTTTGCCACAAAGA
1 CTATTCTTTTCAAAGTTTGCCACAAAGA
79972489 CTATTCTTTTC
1 CTATTCTTTTC
79972500 TGTCGTGTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 1 0.02
28 59 0.98
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.41
Consensus pattern (28 bp):
CTATTCTTTTCAAAGTTTGCCACAAAGA
Found at i:79973752 original size:15 final size:15
Alignment explanation
Indices: 79973720--79973754 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
79973710 AAAATCAAGA
**
79973720 AAAAAATAAATATTT
1 AAAAAATAAATAAAT
79973735 AAAAAATAAATAAAT
1 AAAAAATAAATAAAT
79973750 AAAAA
1 AAAAA
79973755 GAAAAAAGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAAAATAAATAAAT
Found at i:79973759 original size:19 final size:19
Alignment explanation
Indices: 79973716--79973761 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
79973706 AAGGAAAATC
*
79973716 AAGAAAAAAATAAATATTTA
1 AAGAAAAAAATAAATA-TAA
*
79973736 AA-AAATAAATAAATA-AA
1 AAGAAAAAAATAAATATAA
79973753 AAGAAAAAA
1 AAGAAAAAA
79973762 GCAAAACATG
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
17 3 0.14
18 5 0.23
19 12 0.55
20 2 0.09
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.17
Consensus pattern (19 bp):
AAGAAAAAAATAAATATAA
Found at i:79974473 original size:19 final size:19
Alignment explanation
Indices: 79974449--79974487 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
79974439 AGAAGCTAAG
79974449 AGATAACTTTTCGAACGCT
1 AGATAACTTTTCGAACGCT
79974468 AGATAACTTTTCGAACGCT
1 AGATAACTTTTCGAACGCT
79974487 A
1 A
79974488 TGAAGACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (19 bp):
AGATAACTTTTCGAACGCT
Found at i:79977154 original size:25 final size:25
Alignment explanation
Indices: 79977126--79977179 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
79977116 TTTTTTTCAC
* *
79977126 TATTATATTACTATTATTTTGTTGT
1 TATTATATAACTATTATTTTATTGT
* * *
79977151 TATTGTATAACTCTTGTTTTATTGT
1 TATTATATAACTATTATTTTATTGT
79977176 TATT
1 TATT
79977180 TTTGTTACTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.06, G:0.09, T:0.63
Consensus pattern (25 bp):
TATTATATAACTATTATTTTATTGT
Found at i:79978827 original size:13 final size:13
Alignment explanation
Indices: 79978809--79978835 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79978799 TTTTAAAATA
79978809 TGAAAAATAAAAG
1 TGAAAAATAAAAG
79978822 TGAAAAATAAAAG
1 TGAAAAATAAAAG
79978835 T
1 T
79978836 ATAAGGACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.19
Consensus pattern (13 bp):
TGAAAAATAAAAG
Found at i:79986171 original size:10 final size:11
Alignment explanation
Indices: 79986152--79986184 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
79986142 TTATTTAGTT
79986152 TAATTATAATA
1 TAATTATAATA
79986163 TAA-TATAATA
1 TAATTATAATA
79986173 TAATTATAATA
1 TAATTATAATA
79986184 T
1 T
79986185 TTTCTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
TAATTATAATA
Found at i:79997408 original size:19 final size:20
Alignment explanation
Indices: 79997371--79997407 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
79997361 TGGTAATGTT
79997371 AATGTTTTAATTGAATTTTG
1 AATGTTTTAATTGAATTTTG
79997391 AATG-TTTAATTG-ATTTT
1 AATGTTTTAATTGAATTTT
79997408 TATGTCATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.57
Consensus pattern (20 bp):
AATGTTTTAATTGAATTTTG
Found at i:80004338 original size:4 final size:4
Alignment explanation
Indices: 80004322--80004373 Score: 50
Period size: 4 Copynumber: 13.0 Consensus size: 4
80004312 AATAAAAGAT
* * * * * *
80004322 CATA CAAA CATA CATA CATA CATG CATG CATG CATG CATA CATA CACA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
80004370 CATA
1 CATA
80004374 TATCTGAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.44, C:0.27, G:0.08, T:0.21
Consensus pattern (4 bp):
CATA
Found at i:80005590 original size:20 final size:18
Alignment explanation
Indices: 80005543--80005591 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
80005533 TTCAATTATG
80005543 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
80005560 ATTAAGA-TAATTACTTTAAT
1 ATTAA-ATTAA-TA-TTTAAT
80005580 ATTAAATTAATA
1 ATTAAATTAATA
80005592 ATGTAACACC
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 4 0.15
20 14 0.52
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:80014288 original size:56 final size:56
Alignment explanation
Indices: 80014185--80014291 Score: 178
Period size: 56 Copynumber: 1.9 Consensus size: 56
80014175 TTACATGTAA
* * *
80014185 TCACATATCGATGCCACTGTCCCAGACAGTGTCTTACTTACATACATATATTGGAG
1 TCACATATCGATGCCACTGTCCCAGACAGGGTCTTACTCACACACATATATTGGAG
*
80014241 TCACATATCGATGCCACTGTCCCAGACAGGGTCTTACTCGCACACATATAT
1 TCACATATCGATGCCACTGTCCCAGACAGGGTCTTACTCACACACATATAT
80014292 CTATGCCATG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 47 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (56 bp):
TCACATATCGATGCCACTGTCCCAGACAGGGTCTTACTCACACACATATATTGGAG
Found at i:80016401 original size:19 final size:20
Alignment explanation
Indices: 80016377--80016418 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
80016367 TCGACCAGTT
*
80016377 TTTTGGG-TCTTGGTCTCAA
1 TTTTGGGCTCTTGGCCTCAA
80016396 TTTTGGGCTCTTGGCCTCAA
1 TTTTGGGCTCTTGGCCTCAA
80016416 TTT
1 TTT
80016419 AAGATCTCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.10, C:0.19, G:0.24, T:0.48
Consensus pattern (20 bp):
TTTTGGGCTCTTGGCCTCAA
Found at i:80017651 original size:36 final size:36
Alignment explanation
Indices: 80017604--80017675 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
80017594 TCTTCAGTTT
* * *
80017604 GAACTTAGGCAATCTATGAGCTAATATTTGCTTGTC
1 GAACTTAGGCAATCAATAACCTAATATTTGCTTGTC
80017640 GAACTTAGGCAATCAATAACCTAATATTTGCTTGTC
1 GAACTTAGGCAATCAATAACCTAATATTTGCTTGTC
80017676 ACAATTTCGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.35
Consensus pattern (36 bp):
GAACTTAGGCAATCAATAACCTAATATTTGCTTGTC
Found at i:80018314 original size:22 final size:21
Alignment explanation
Indices: 80018289--80018347 Score: 55
Period size: 22 Copynumber: 2.8 Consensus size: 21
80018279 ATTTTTAGAC
*
80018289 TTTAGTTTTTAGGATTTTATTT
1 TTTAATTTTTAGGATTTTA-TT
* ** **
80018311 TTTATTTTTTATTACATTATT
1 TTTAATTTTTAGGATTTTATT
80018332 TTTAATTTTTAGGATT
1 TTTAATTTTTAGGATT
80018348 GGGTTGGATT
Statistics
Matches: 27, Mismatches: 10, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
21 13 0.48
22 14 0.52
ACGTcount: A:0.22, C:0.02, G:0.08, T:0.68
Consensus pattern (21 bp):
TTTAATTTTTAGGATTTTATT
Found at i:80021076 original size:17 final size:17
Alignment explanation
Indices: 80021047--80021097 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
80021037 GAAATAATTT
80021047 TATAAATATATTTTTTAC
1 TATAAA-ATATTTTTTAC
*
80021065 TATAAAATATTTTTCAC
1 TATAAAATATTTTTTAC
*
80021082 TCATATAAT-TTTTTTA
1 T-ATAAAATATTTTTTA
80021098 TACAAATATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 17 0.59
18 12 0.41
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (17 bp):
TATAAAATATTTTTTAC
Found at i:80030483 original size:17 final size:17
Alignment explanation
Indices: 80030461--80030493 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
80030451 CATTCAAAAG
*
80030461 ATGTAGTAAAAAATGTT
1 ATGTAGCAAAAAATGTT
80030478 ATGTAGCAAAAAATGT
1 ATGTAGCAAAAAATGT
80030494 CAATTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.03, G:0.18, T:0.30
Consensus pattern (17 bp):
ATGTAGCAAAAAATGTT
Found at i:80030923 original size:97 final size:98
Alignment explanation
Indices: 80030813--80031011 Score: 271
Period size: 98 Copynumber: 2.0 Consensus size: 98
80030803 TTAATTCATC
* *
80030813 TTTTTAATTAAT-AACTCTTTTATTTATATAAATAAAGTAA-AGA-AATGTAATTATATAAT-AA
1 TTTTTAATTAATAAATTC-TTTATTTATATAAATAAAGTAATA-ATAATATAATTATATAATAAA
80030874 AATATAATTTTTATATATATCATTATGTTAAAAATA
64 AATAT-ATTTTTATATATATCATTATGTTAAAAATA
* * *
80030910 TTTTTAATTAATAAATTCTTTATTTATGTAAATAAATTAATAATTATATAATTATATAATAAAAA
1 TTTTTAATTAATAAATTCTTTATTTATATAAATAAAGTAATAATAATATAATTATATAATAAAAA
* * *
80030975 TATTTTTTTATATTTATCATTATGTTGAAAATA
66 TATATTTTTATATATATCATTATGTTAAAAATA
80031008 TTTT
1 TTTT
80031012 ATTTCTTAAA
Statistics
Matches: 90, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
97 33 0.37
98 50 0.56
99 7 0.08
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.49
Consensus pattern (98 bp):
TTTTTAATTAATAAATTCTTTATTTATATAAATAAAGTAATAATAATATAATTATATAATAAAAA
TATATTTTTATATATATCATTATGTTAAAAATA
Found at i:80036565 original size:2 final size:2
Alignment explanation
Indices: 80036558--80036588 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
80036548 TTTGTCAACT
80036558 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80036589 TGTATGATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80036794 original size:22 final size:22
Alignment explanation
Indices: 80036768--80036834 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
80036758 TACATTATAC
80036768 TTAGAATAATTGTATATAATTG
1 TTAGAATAATTGTATATAATTG
*
80036790 TTAG----A-TGTAT-TAAGTGAG
1 TTAGAATAATTGTATATAA-T-TG
*
80036808 GTAGAATAATTGTATATAATTG
1 TTAGAATAATTGTATATAATTG
80036830 TTAGA
1 TTAGA
80036835 TGTATTAAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 16
0.62 0.08 0.30
Matches are distributed among these distances:
16 3 0.09
17 6 0.18
18 5 0.15
22 10 0.30
23 6 0.18
24 3 0.09
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (22 bp):
TTAGAATAATTGTATATAATTG
Found at i:80036824 original size:40 final size:40
Alignment explanation
Indices: 80036769--80036849 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
80036759 ACATTATACT
*
80036769 TAGAATAATTGTATATAATTGTTAGATGTATTAAGTGAGG
1 TAGAATAATTGTATATAATTGTTAGATGTATTAAGAGAGG
80036809 TAGAATAATTGTATATAATTGTTAGATGTATTAAGAGAGG
1 TAGAATAATTGTATATAATTGTTAGATGTATTAAGAGAGG
80036849 T
1 T
80036850 TTATTGTACT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.38, C:0.00, G:0.22, T:0.40
Consensus pattern (40 bp):
TAGAATAATTGTATATAATTGTTAGATGTATTAAGAGAGG
Found at i:80040349 original size:24 final size:24
Alignment explanation
Indices: 80040322--80040373 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
80040312 TTAGTAAGTC
*
80040322 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
80040346 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
80040370 AAAT
1 AAAT
80040374 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:80041349 original size:22 final size:23
Alignment explanation
Indices: 80041324--80041367 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
80041314 AATCTTATAT
*
80041324 TTTTTTTCAAAA-AATCAAAAAA
1 TTTTTTTAAAAATAATCAAAAAA
*
80041346 TTTTTTTAAAAATAATTAAAAA
1 TTTTTTTAAAAATAATCAAAAA
80041368 TAAAAAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (23 bp):
TTTTTTTAAAAATAATCAAAAAA
Found at i:80041438 original size:29 final size:28
Alignment explanation
Indices: 80041406--80041465 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
80041396 AAATTTATTT
80041406 AAACCTACAAAAATTATAAAAATTCATAA
1 AAACCTACAAAAATTATAAAAATT-ATAA
* * * * *
80041435 AAACTTATAAATATTTTATAAATTATAA
1 AAACCTACAAAAATTATAAAAATTATAA
80041463 AAA
1 AAA
80041466 TAATTATAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 7 0.27
29 19 0.73
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (28 bp):
AAACCTACAAAAATTATAAAAATTATAA
Found at i:80041460 original size:18 final size:19
Alignment explanation
Indices: 80041414--80041466 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
80041404 TTAAACCTAC
80041414 AAAAATTATAAAAATTCAT
1 AAAAATTATAAAAATTCAT
* *
80041433 AAAAACTTATAAATATT-TT
1 AAAAA-TTATAAAAATTCAT
*
80041452 ATAAATTATAAAAAT
1 AAAAATTATAAAAAT
80041467 AATTATAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 9 0.31
19 10 0.34
20 10 0.34
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATTATAAAAATTCAT
Found at i:80041472 original size:12 final size:12
Alignment explanation
Indices: 80041455--80041506 Score: 50
Period size: 12 Copynumber: 3.9 Consensus size: 12
80041445 ATATTTTATA
80041455 AATTATAAAAAT
1 AATTATAAAAAT
80041467 AATTATAAAAAAT
1 AATTAT-AAAAAT
*
80041480 AAAACATATTAAAAAT
1 --AA-TTA-TAAAAAT
80041496 AATTATAAAAA
1 AATTATAAAAA
80041507 ATTATAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
12 12 0.36
13 8 0.24
14 2 0.06
15 2 0.06
16 8 0.24
17 1 0.03
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (12 bp):
AATTATAAAAAT
Found at i:80041511 original size:10 final size:10
Alignment explanation
Indices: 80041414--80041542 Score: 74
Period size: 10 Copynumber: 13.1 Consensus size: 10
80041404 TTAAACCTAC
80041414 AAAAATTAT-
1 AAAAATTATA
80041423 AAAAATTCATA
1 AAAAATT-ATA
*
80041434 AAAACTTAT-
1 AAAAATTATA
* *
80041443 AAATATT-TT
1 AAAAATTATA
*
80041452 ATAAATTATAA
1 AAAAATTAT-A
80041463 AAATAATTATA
1 AAA-AATTATA
80041474 AAAAA-TA-A
1 AAAAATTATA
*
80041482 AACATATTA-A
1 AA-AAATTATA
80041492 AAATAATTATA
1 AAA-AATTATA
80041503 AAAAATTATA
1 AAAAATTATA
* * *
80041513 ATAAGTTCTA
1 AAAAATTATA
*
80041523 ATAAATTAT-
1 AAAAATTATA
*
80041532 ATAAATTATA
1 AAAAATTATA
80041542 A
1 A
80041543 TTTTTAATAA
Statistics
Matches: 95, Mismatches: 14, Indels: 21
0.73 0.11 0.16
Matches are distributed among these distances:
8 4 0.04
9 31 0.33
10 38 0.40
11 16 0.17
12 6 0.06
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (10 bp):
AAAAATTATA
Found at i:80043061 original size:21 final size:20
Alignment explanation
Indices: 80043024--80043064 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
80043014 TTTTTTATGT
*
80043024 TAAATAAGGTTATAATAATA
1 TAAATAAGGTTAAAATAATA
80043044 TAAATAATGGTTAAAATAATA
1 TAAATAA-GGTTAAAATAATA
80043065 AAACATAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.56, C:0.00, G:0.10, T:0.34
Consensus pattern (20 bp):
TAAATAAGGTTAAAATAATA
Found at i:80050788 original size:8 final size:8
Alignment explanation
Indices: 80050777--80050805 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
80050767 GGTGGTTAAG
80050777 TGGAGTGT
1 TGGAGTGT
80050785 TGGAGTGT
1 TGGAGTGT
80050793 TGGAGTGT
1 TGGAGTGT
80050801 TGGAG
1 TGGAG
80050806 GTCCTGTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.52, T:0.34
Consensus pattern (8 bp):
TGGAGTGT
Found at i:80060871 original size:18 final size:18
Alignment explanation
Indices: 80060848--80060882 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
80060838 TACGCCCGCT
80060848 ACTCCCAAGGCGGAGACC
1 ACTCCCAAGGCGGAGACC
*
80060866 ACTCCCACGGCGGAGAC
1 ACTCCCAAGGCGGAGAC
80060883 GGTAAGCGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.40, G:0.29, T:0.06
Consensus pattern (18 bp):
ACTCCCAAGGCGGAGACC
Found at i:80067664 original size:111 final size:114
Alignment explanation
Indices: 80067542--80067753 Score: 261
Period size: 114 Copynumber: 1.9 Consensus size: 114
80067532 CATATTACAA
* * * *
80067542 GATATCAATAATAATATAA-ACTACATGATACATACTTTAACATTTCATG-CAAATATAATATAG
1 GATAT-AATAATAA-ATAACA-TA-AT-ATACATACATTAACATTTCATGTAAAATACAACATAG
* * *
80067605 AAAATGAT-AA-ATAACGACATAAATTGCATAATATACATTAACATTTCATGCT
61 AAAATAATGAATATAACAACATAAATTACATAATATACATTAACATTTCATGCT
*
80067657 GATATAATCATAAATAACATAATATACATACATTAACATTTCATGTAAAATACAACATAGAAAAT
1 GATATAATAATAAATAACATAATATACATACATTAACATTTCATGTAAAATACAACATAGAAAAT
* *
80067722 AATGAATATAACAATATAAATTACATAGTATA
66 AATGAATATAACAACATAAATTACATAATATA
80067754 TATATAATAA
Statistics
Matches: 83, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
111 21 0.25
112 20 0.24
113 8 0.10
114 29 0.35
115 5 0.06
ACGTcount: A:0.51, C:0.12, G:0.06, T:0.31
Consensus pattern (114 bp):
GATATAATAATAAATAACATAATATACATACATTAACATTTCATGTAAAATACAACATAGAAAAT
AATGAATATAACAACATAAATTACATAATATACATTAACATTTCATGCT
Found at i:80067846 original size:18 final size:18
Alignment explanation
Indices: 80067823--80067857 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
80067813 ATGCAAATAT
*
80067823 ATAAAAACAATAAATAAC
1 ATAAAAACAACAAATAAC
*
80067841 ATAAAAATAACAAATAA
1 ATAAAAACAACAAATAA
80067858 TTTATGAGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (18 bp):
ATAAAAACAACAAATAAC
Found at i:80068232 original size:14 final size:14
Alignment explanation
Indices: 80068213--80068254 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
80068203 ATTTTAAAAT
80068213 TATACATAATATAA
1 TATACATAATATAA
*
80068227 TATAC--AATAAAA
1 TATACATAATATAA
*
80068239 TATAAATAATATAA
1 TATACATAATATAA
80068253 TA
1 TA
80068255 GATAATACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
12 10 0.43
14 13 0.57
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (14 bp):
TATACATAATATAA
Found at i:80068261 original size:26 final size:27
Alignment explanation
Indices: 80068207--80068261 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
80068197 TTACAAATTT
* *
80068207 TAAAATTATACATAATATAATATACAA
1 TAAAATTATAAATAATATAATAGACAA
*
80068234 TAAAA-TATAAATAATATAATAGATAA
1 TAAAATTATAAATAATATAATAGACAA
80068260 TA
1 TA
80068262 CAAAAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.33
Consensus pattern (27 bp):
TAAAATTATAAATAATATAATAGACAA
Found at i:80068326 original size:25 final size:26
Alignment explanation
Indices: 80068298--80068347 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
80068288 AAGTTTAAAG
80068298 TAAAATAAAT-AA-TATACAAAATATT
1 TAAAATAAATAAATTATA-AAAATATT
80068323 TAAAATAAATAAATTATAAAAATAT
1 TAAAATAAATAAATTATAAAAATAT
80068348 GTATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 10 0.43
26 9 0.39
27 4 0.17
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (26 bp):
TAAAATAAATAAATTATAAAAATATT
Found at i:80069988 original size:90 final size:90
Alignment explanation
Indices: 80069835--80070318 Score: 783
Period size: 90 Copynumber: 5.4 Consensus size: 90
80069825 TAATATCATT
* * *
80069835 GATCTGCTCCTCGTCAAATACAGAGACTCCAAATCTG-CTATCTTCGATCTGCTTCGATGTAAAC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTTCGATGTAAAC
*
80069899 ACATGAATGTCAGATCTGCTATCTTC
65 ACACGAATGTCAGATCTGCTATCTTC
* *
80069925 GATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTGTCATCTTTGATCTGCTTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
*
80069990 CACGAATGTCAAATCTGCTATCTTC
66 CACGAATGTCAGATCTGCTATCTTC
* *
80070015 GATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTACTTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
*
80070080 CACGAATGTCAGATCTGCTATATTC
66 CACGAATGTCAGATCTGCTATCTTC
*
80070105 GATCTGCTCCCCGTCTAATAC-GAAGACGCCAAATCTGTCATCTTCGATCTACTTCGATGTAAAC
1 GATCTGCTCCCCGTCTAATACAG-AGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAAC
*
80070169 ACACGAATGTCAGATCTACTATCTTC
65 ACACGAATGTCAGATCTGCTATCTTC
* *
80070195 GATTTGCTCCCCGTCTAATACGGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
80070260 CACGAATGTCAGATCTGCTATCTTC
66 CACGAATGTCAGATCTGCTATCTTC
* * *
80070285 GATCTGCTCCCCGTTTAATACAAAGATGCCAAAT
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAAT
80070319 TTGCTTCCTC
Statistics
Matches: 367, Mismatches: 24, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
89 1 0.00
90 364 0.99
91 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.30
Consensus pattern (90 bp):
GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACA
CACGAATGTCAGATCTGCTATCTTC
Found at i:80082786 original size:31 final size:27
Alignment explanation
Indices: 80082750--80082821 Score: 72
Period size: 31 Copynumber: 2.4 Consensus size: 27
80082740 AAAACCAAAG
*
80082750 GTTCATGTATACATATGAACCACAATTCAA
1 GTTCATGTATA-AT-TGAACCA-AATTAAA
*
80082780 GTTTCATGTGTATAATTGCACCAAATTAAA
1 G-TTCA--TGTATAATTGAACCAAATTAAA
80082810 GTTCATGTATAA
1 GTTCATGTATAA
80082822 ATTAAAGTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
27 7 0.19
29 4 0.11
30 8 0.22
31 10 0.27
32 2 0.05
33 6 0.16
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (27 bp):
GTTCATGTATAATTGAACCAAATTAAA
Found at i:80082974 original size:30 final size:30
Alignment explanation
Indices: 80082940--80083002 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
80082930 AAAGATATTA
*
80082940 ATATATATCAAACAATTTTCATATAACTGT
1 ATATATATCAAACAATTTTCATATAACCGT
*
80082970 ATATATATCAAACAATTTTCATTTAACCGT
1 ATATATATCAAACAATTTTCATATAACCGT
80083000 ATA
1 ATA
80083003 AATGTTGTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.43, C:0.14, G:0.03, T:0.40
Consensus pattern (30 bp):
ATATATATCAAACAATTTTCATATAACCGT
Found at i:80083476 original size:11 final size:11
Alignment explanation
Indices: 80083460--80083489 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
80083450 CGTGCAAAGG
80083460 TTTTTTTTTC-
1 TTTTTTTTTCA
80083470 TTTTTTTTTCA
1 TTTTTTTTTCA
80083481 TTTTTTTTT
1 TTTTTTTTT
80083490 GAAGTTGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.03, C:0.07, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTTTCA
Found at i:80083649 original size:18 final size:18
Alignment explanation
Indices: 80083626--80083662 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
80083616 GGCGGACGGT
80083626 AGTGGTCCGACGACCGGA
1 AGTGGTCCGACGACCGGA
80083644 AGTGGTCCGACGACCGGA
1 AGTGGTCCGACGACCGGA
80083662 A
1 A
80083663 TCCGGCCGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.27, G:0.38, T:0.11
Consensus pattern (18 bp):
AGTGGTCCGACGACCGGA
Found at i:80084352 original size:3 final size:3
Alignment explanation
Indices: 80084346--80084474 Score: 99
Period size: 3 Copynumber: 44.0 Consensus size: 3
80084336 CTTTTGTTTC
* * * *
80084346 TTA TTA TTA TTA TT- TT- TTC TTA CTA TTA TTA TTTA TTA TCA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* * * *
80084390 TTA TTA TTA TCA TTG CTA TT- TT- TTA TT- TGTA TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
* *
80084433 TTA TT- TTA CTA GTA TTA TTTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
80084475 CTGTTATTTT
Statistics
Matches: 101, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
2 11 0.11
3 83 0.82
4 7 0.07
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:80084366 original size:19 final size:19
Alignment explanation
Indices: 80084342--80084470 Score: 72
Period size: 19 Copynumber: 6.9 Consensus size: 19
80084332 TTTTCTTTTG
80084342 TTTCTTATTATTATTATTT
1 TTTCTTATTATTATTATTT
*
80084361 TTTCTTACTATTATTATTT
1 TTTCTTATTATTATTATTT
* **
80084380 ATTATCAATATTATTATTATCA
1 -TT-TC-TTATTATTATTATTT
*
80084402 TTGC-TATT-TT-TTA-TT
1 TTTCTTATTATTATTATTT
* * *
80084417 TGTATTACTATTATTA-TT
1 TTTCTTATTATTATTATTT
* * *
80084435 ATT-TTACTAGTATTATTT
1 TTTCTTATTATTATTATTT
* *
80084453 ATTATTATTATTATTATT
1 TTTCTTATTATTATTATT
80084471 ATTACTGTTA
Statistics
Matches: 85, Mismatches: 17, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
15 1 0.01
16 6 0.07
17 15 0.18
18 15 0.18
19 30 0.35
20 3 0.04
21 4 0.05
22 11 0.13
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTCTTATTATTATTATTT
Found at i:80084483 original size:73 final size:72
Alignment explanation
Indices: 80084347--80084484 Score: 188
Period size: 73 Copynumber: 1.9 Consensus size: 72
80084337 TTTTGTTTCT
* * *
80084347 TATTATTATTATTTTTTCTTACTATTATTATTTATTATCAATATTATTATTATCATTGCTATTTT
1 TATTACTATTATTTTTTCTTACTAGTATTATTTATTATCAATATTATTATTATCACTGCTATTTT
80084412 TTATTTG
66 TTATTTG
* * * *
80084419 TATTACTATTATTATTATT-TTACTAGTATTATTTATTATTATTATTATTATTATTACTGTTATT
1 TATTACTATTATT-TT-TTCTTACTAGTATTATTTATTATCAATATTATTATTATCACTGCTATT
80084483 TT
64 TT
80084485 CATTCTATTC
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
72 12 0.21
73 43 0.75
74 2 0.04
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.64
Consensus pattern (72 bp):
TATTACTATTATTTTTTCTTACTAGTATTATTTATTATCAATATTATTATTATCACTGCTATTTT
TTATTTG
Found at i:80098596 original size:17 final size:17
Alignment explanation
Indices: 80098574--80098656 Score: 121
Period size: 18 Copynumber: 4.8 Consensus size: 17
80098564 GATATGCAAC
80098574 CTTAGATATGATACAAT
1 CTTAGATATGATACAAT
* *
80098591 CTTAGATATAATTGCAAT
1 CTTAGATATGA-TACAAT
80098609 CTTAGATATGATACAAT
1 CTTAGATATGATACAAT
*
80098626 CTTAGATATGATTGCAAT
1 CTTAGATATGA-TACAAT
80098644 CTTAGATATGATA
1 CTTAGATATGATA
80098657 TATAATCTTA
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
17 27 0.47
18 31 0.53
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (17 bp):
CTTAGATATGATACAAT
Found at i:80098610 original size:18 final size:17
Alignment explanation
Indices: 80098567--80098655 Score: 124
Period size: 17 Copynumber: 5.1 Consensus size: 17
80098557 CTTCAATGAT
*
80098567 ATGCAACCTTAGATATG
1 ATGCAATCTTAGATATG
* *
80098584 ATACAATCTTAGATATA
1 ATGCAATCTTAGATATG
80098601 ATTGCAATCTTAGATATG
1 A-TGCAATCTTAGATATG
*
80098619 ATACAATCTTAGATATG
1 ATGCAATCTTAGATATG
80098636 ATTGCAATCTTAGATATG
1 A-TGCAATCTTAGATATG
80098654 AT
1 AT
80098656 ATATAATCTT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
17 32 0.51
18 31 0.49
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (17 bp):
ATGCAATCTTAGATATG
Found at i:80098613 original size:35 final size:35
Alignment explanation
Indices: 80098568--80098656 Score: 160
Period size: 35 Copynumber: 2.5 Consensus size: 35
80098558 TTCAATGATA
*
80098568 TGCAACCTTAGATATGATACAATCTTAGATATAAT
1 TGCAATCTTAGATATGATACAATCTTAGATATAAT
*
80098603 TGCAATCTTAGATATGATACAATCTTAGATATGAT
1 TGCAATCTTAGATATGATACAATCTTAGATATAAT
80098638 TGCAATCTTAGATATGATA
1 TGCAATCTTAGATATGATA
80098657 TATAATCTTA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 52 1.00
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (35 bp):
TGCAATCTTAGATATGATACAATCTTAGATATAAT
Found at i:80105072 original size:6 final size:6
Alignment explanation
Indices: 80105063--80105138 Score: 69
Period size: 6 Copynumber: 13.8 Consensus size: 6
80105053 AAAAAAGAAA
*
80105063 AAAAAG AAAAAG --AAA- AAAAAG AAAAAGG AAAAAG --AAAG AAAAGG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAA-G AAAAAG AAAAAG AAAAAG
*
80105107 AAAAGG AAAAAG --AAA- AAAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
80105139 TGGAGAGGCG
Statistics
Matches: 59, Mismatches: 2, Indels: 18
0.75 0.03 0.23
Matches are distributed among these distances:
4 10 0.17
5 6 0.10
6 37 0.63
7 6 0.10
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:80105074 original size:15 final size:15
Alignment explanation
Indices: 80105054--80105138 Score: 113
Period size: 15 Copynumber: 5.7 Consensus size: 15
80105044 CTATTTTAAA
80105054 AAAAAGAAAAAAAAG
1 AAAAAGAAAAAAAAG
80105069 AAAAAGAAAAAAAAG
1 AAAAAGAAAAAAAAG
80105084 AAAAAGGAAAAAGAAAG
1 AAAAA-GAAAAA-AAAG
* *
80105101 -AAAAG--GAAAAGG
1 AAAAAGAAAAAAAAG
80105113 AAAAAGAAAAAAAAG
1 AAAAAGAAAAAAAAG
80105128 AAAAAGAAAAA
1 AAAAAGAAAAA
80105139 TGGAGAGGCG
Statistics
Matches: 61, Mismatches: 4, Indels: 10
0.81 0.05 0.13
Matches are distributed among these distances:
12 3 0.05
13 7 0.11
15 37 0.61
16 10 0.16
17 4 0.07
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAAAAG
Found at i:80105078 original size:22 final size:21
Alignment explanation
Indices: 80105053--80105138 Score: 100
Period size: 22 Copynumber: 4.0 Consensus size: 21
80105043 TCTATTTTAA
80105053 AAAAAAGAAAAAAAAGAAAAAG
1 AAAAAA-AAAAAAAAGAAAAAG
*
80105075 AAAAAAAAGAAAAAGGAAAAAG
1 AAAAAAAA-AAAAAAGAAAAAG
** *
80105097 AAAGAAAAGGAAAAGGAAAAAG
1 AAA-AAAAAAAAAAAGAAAAAG
*
80105119 AAAAAAAAGAAAAAGAAAAA
1 AAAAAAAAAAAAAAGAAAAA
80105139 TGGAGAGGCG
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
21 17 0.30
22 36 0.63
23 4 0.07
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (21 bp):
AAAAAAAAAAAAAAGAAAAAG
Found at i:80106099 original size:44 final size:44
Alignment explanation
Indices: 80106051--80106230 Score: 195
Period size: 44 Copynumber: 4.1 Consensus size: 44
80106041 CAAAGAAACA
80106051 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* ** * * * * **
80106095 AGATTTGACATTTCTGTGCTTACAGCGAAGCAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* * *
80106140 AGCA--TGGCATCCCTATGTTCATAGGGAAC-GAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
*
80106183 AGATTTGGCATCCCTGTATTTATAGGGAACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
80106227 AGAT
1 AGAT
80106231 CTAACCTTTA
Statistics
Matches: 107, Mismatches: 23, Indels: 12
0.75 0.16 0.08
Matches are distributed among these distances:
42 3 0.03
43 12 0.11
44 75 0.70
45 16 0.15
46 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:80106484 original size:83 final size:83
Alignment explanation
Indices: 80106341--80106849 Score: 858
Period size: 83 Copynumber: 6.1 Consensus size: 83
80106331 GTTCTTAGAC
* *
80106341 ACATAGCAGATTAGACTCTCAGATGTTTTCAAACAGACTCAAGATGGTTTGGCGTCCTTGTGCTT
1 ACATAGCAGATTAGACTCTCAGATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTT
80106406 ACAAGGAACAAATCGAGG
66 ACAAGGAACAAATCGAGG
*
80106424 ACATAGCAGATTAGACTCTCAGATGTTCTCAAACAGACTCAAGATGGTTTGGCATTCTTGTGCTT
1 ACATAGCAGATTAGACTCTCAGATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTT
80106489 ACAAGGAACAAATCGAGG
66 ACAAGGAACAAATCGAGG
*
80106507 ACATAGCAGATTAGACTCTCAGATGTTCTCAAACAGACTCAAGATGGTTTGGCATTCTTGTGCTT
1 ACATAGCAGATTAGACTCTCAGATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTT
80106572 ACAAGGAACAAATCGAGG
66 ACAAGGAACAAATCGAGG
80106590 ACATAGCAGATTAGACTCTCAGATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTT
1 ACATAGCAGATTAGACTCTCAGATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTT
*
80106655 ACCAGGAACAAATCGAGG
66 ACAAGGAACAAATCGAGG
* * * * * *
80106673 ACATAGCAGATTTGACTCTCAGATGTTCTTAAACAGACTCAAGATGATTTGGTATTCTTGTGTTT
1 ACATAGCAGATTAGACTCTCAGATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTT
**
80106738 ACAAAAAACAAATCGAGG
66 ACAAGGAACAAATCGAGG
* * *
80106756 ACATAGCAGATTTGACTCTCAGATGTTCTCAAACAGACTTAAGATGATTTGGCATCCTTGTGCTT
1 ACATAGCAGATTAGACTCTCAGATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTT
80106821 ACAAGGAACAAATCGA-G
66 ACAAGGAACAAATCGAGG
*
80106838 ACATAGCTGATT
1 ACATAGCAGATT
80106850 TGGCTTTCAC
Statistics
Matches: 404, Mismatches: 22, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
82 12 0.03
83 392 0.97
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (83 bp):
ACATAGCAGATTAGACTCTCAGATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTT
ACAAGGAACAAATCGAGG
Found at i:80107646 original size:18 final size:18
Alignment explanation
Indices: 80107617--80107706 Score: 128
Period size: 18 Copynumber: 4.9 Consensus size: 18
80107607 ATAATCTTCA
80107617 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
80107636 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
80107654 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
80107671 ATGATTGCAATTTTAGAT
1 ATGATTGCAATCTTAGAT
*
80107689 ATGATATACAATCTTAGA
1 ATGAT-TGCAATCTTAGA
80107707 AGATATGATT
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
17 16 0.25
18 33 0.52
19 15 0.23
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:80107658 original size:37 final size:36
Alignment explanation
Indices: 80107617--80107706 Score: 146
Period size: 35 Copynumber: 2.5 Consensus size: 36
80107607 ATAATCTTCA
80107617 ATGATATGCAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATAT-CAATCTTAGATATGATTGCAATCTTAGAT
*
80107654 ATGATA-CAATCTTAGATATGATTGCAATTTTAGAT
1 ATGATATCAATCTTAGATATGATTGCAATCTTAGAT
80107689 ATGATATACAATCTTAGA
1 ATGATAT-CAATCTTAGA
80107707 AGATATGATT
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
35 34 0.68
37 16 0.32
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (36 bp):
ATGATATCAATCTTAGATATGATTGCAATCTTAGAT
Found at i:80113803 original size:28 final size:28
Alignment explanation
Indices: 80113763--80113822 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
80113753 ACTCTTAAGC
80113763 TTAAACATATATTAGCTTGTTTAGAGAA
1 TTAAACATATATTAGCTTGTTTAGAGAA
80113791 TTAAACATATATTAGCTTGTTTAGAGAA
1 TTAAACATATATTAGCTTGTTTAGAGAA
80113819 TTAA
1 TTAA
80113823 GTTCTTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (28 bp):
TTAAACATATATTAGCTTGTTTAGAGAA
Found at i:80116358 original size:118 final size:118
Alignment explanation
Indices: 80116155--80116372 Score: 312
Period size: 118 Copynumber: 1.8 Consensus size: 118
80116145 ATTATATAAT
* * *
80116155 ATATTAATAATTTATATATATGCATCGATGATTAAACATTATAATATCATATAATATTATATCTT
1 ATATTAATAATTTATATATATGCATCAATGACTAAACATTATAATATCATATAATACTATATCTT
*
80116220 TTATTATAATCTATATTATAATAATAGTTATATATGTATTAATATTTTTAGTA
66 TTATTATAACCTATATTATAATAATAGTTATATATGTATTAATATTTTTAGTA
* * * * * * * *
80116273 ATATTAATAGTTTATATATGTGTATCAATTACTAAACATTATAATCTTATGTAATACTGTATCTT
1 ATATTAATAATTTATATATATGCATCAATGACTAAACATTATAATATCATATAATACTATATCTT
80116338 TTATTATAACCTAT-TGTATAATAATAGTTATATAT
66 TTATTATAACCTATAT-TATAATAATAGTTATATAT
80116373 TATAGTAGTA
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
117 1 0.01
118 86 0.99
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (118 bp):
ATATTAATAATTTATATATATGCATCAATGACTAAACATTATAATATCATATAATACTATATCTT
TTATTATAACCTATATTATAATAATAGTTATATATGTATTAATATTTTTAGTA
Found at i:80116406 original size:17 final size:17
Alignment explanation
Indices: 80116384--80116420 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
80116374 ATAGTAGTAC
80116384 ATTATATATTA-CATATT
1 ATTATATATTATC-TATT
80116401 ATTATATATTATCTATT
1 ATTATATATTATCTATT
80116418 ATT
1 ATT
80116421 GTTTATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 18 0.95
18 1 0.05
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTATATATTATCTATT
Found at i:80116406 original size:118 final size:116
Alignment explanation
Indices: 80116153--80116409 Score: 286
Period size: 118 Copynumber: 2.2 Consensus size: 116
80116143 ATATTATATA
* * *
80116153 ATATATTAATAATTTATATATATGCATCGATGATTAAACATTATAATATCATATAATATTATATC
1 ATATATTAATAATTTATATATATGCATCAATGACTAAACATTATAATATCATATAATACTATATC
* **
80116218 TTTTATTATAATCTATATTATAATAATAGTTATATATGTATTAATATTTTT
66 TTTTATTATAACCTATATTATAATAATAGTTATATATGTATTAATATCATT
* * * * * * * *
80116269 AGTAATATTAATAGTTTATATATGTGTATCAATTACTAAACATTATAATCTTATGTAATACTGTA
1 A-T-ATATTAATAATTTATATATATGCATCAATGACTAAACATTATAATATCATATAATACTATA
*
80116334 TCTTTTATTATAACCTAT-TGTATAATAATAGTTATATAT-TA-TAGTAGTACATT
64 TCTTTTATTATAACCTATAT-TATAATAATAGTTATATATGTATTAATA-T-CATT
*
80116387 ATATATTACATATTATTATATAT
1 ATATATTA-ATAAT-TTATATAT
80116410 TATCTATTAT
Statistics
Matches: 118, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
116 11 0.09
117 10 0.08
118 97 0.82
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (116 bp):
ATATATTAATAATTTATATATATGCATCAATGACTAAACATTATAATATCATATAATACTATATC
TTTTATTATAACCTATATTATAATAATAGTTATATATGTATTAATATCATT
Found at i:80118287 original size:32 final size:32
Alignment explanation
Indices: 80118246--80118326 Score: 153
Period size: 32 Copynumber: 2.5 Consensus size: 32
80118236 AAATGGCCAA
*
80118246 ATACATGATATATACCAAGATGACACTAGCCT
1 ATACATGATATATACCAAGACGACACTAGCCT
80118278 ATACATGATATATACCAAGACGACACTAGCCT
1 ATACATGATATATACCAAGACGACACTAGCCT
80118310 ATACATGATATATACCA
1 ATACATGATATATACCA
80118327 TATATACAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.42, C:0.22, G:0.11, T:0.25
Consensus pattern (32 bp):
ATACATGATATATACCAAGACGACACTAGCCT
Found at i:80118848 original size:43 final size:42
Alignment explanation
Indices: 80118751--80118917 Score: 167
Period size: 43 Copynumber: 3.9 Consensus size: 42
80118741 TAGCTCGTAC
* * * * * *
80118751 AATGCC-ATATCCCAGATATGGTCTTACATTTTATCACATATC
1 AATGCCAATGTCCTAGACATGGTCTTACATGTAATCACA-ATA
* * * * * *
80118793 GAGGCCACTGTCCTAGACAGGGTCTTACACGTAATCGATTAAT-
1 AATGCCAATGTCCTAGACATGGTCTTACATGTAATC-A-CAATA
*
80118836 GATGCCAATGTCCTAGACATGGTCTTACATGTAATCACAATA
1 AATGCCAATGTCCTAGACATGGTCTTACATGTAATCACAATA
80118878 CAATGCCAATGTCCTAGACATGGTCTTACATGTAATCACA
1 -AATGCCAATGTCCTAGACATGGTCTTACATGTAATCACA
80118918 TCTCAGTAAC
Statistics
Matches: 103, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
41 3 0.03
42 5 0.05
43 91 0.88
44 3 0.03
45 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.29
Consensus pattern (42 bp):
AATGCCAATGTCCTAGACATGGTCTTACATGTAATCACAATA
Found at i:80124892 original size:17 final size:17
Alignment explanation
Indices: 80124870--80124902 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
80124860 TGTGTATGTG
80124870 AATGAATGTTAATTGAT
1 AATGAATGTTAATTGAT
*
80124887 AATGAATGTTTATTGA
1 AATGAATGTTAATTGA
80124903 GTTGTGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.42
Consensus pattern (17 bp):
AATGAATGTTAATTGAT
Found at i:80131496 original size:56 final size:56
Alignment explanation
Indices: 80131428--80131539 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
80131418 TTATGTTTAT
80131428 TTACTTTTTGTTATTAATTTAATATTATAACTAATATATATTTCAATTAAAAATCC
1 TTACTTTTTGTTATTAATTTAATATTATAACTAATATATATTTCAATTAAAAATCC
80131484 TTACTTTTTGTTATTAATTTAATATTATAACTAATATATATTTCAATTAAAAATCC
1 TTACTTTTTGTTATTAATTTAATATTATAACTAATATATATTTCAATTAAAAATCC
80131540 CCCACTAACT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (56 bp):
TTACTTTTTGTTATTAATTTAATATTATAACTAATATATATTTCAATTAAAAATCC
Found at i:80133825 original size:26 final size:26
Alignment explanation
Indices: 80133796--80133877 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
80133786 TGATACAAAT
80133796 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80133822 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80133848 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80133874 TGAT
1 TGAT
80133878 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80136756 original size:79 final size:82
Alignment explanation
Indices: 80136645--80136829 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
80136635 GCTACTCGTT
* * *
80136645 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTGAACCC
* *
80136708 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
80136725 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTGAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTGAACCCG
* *
80136788 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
80136805 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80136830 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTGAACCCG
GATATAGTAACTTAGCA
Found at i:80136829 original size:40 final size:40
Alignment explanation
Indices: 80136626--80136829 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
80136616 CGGAATTTAA
** *
80136626 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80136666 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80136706 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
80136745 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTGAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
80136785 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80136825 CCGGA
1 CCGGA
80136830 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80144213 original size:26 final size:26
Alignment explanation
Indices: 80144184--80144291 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
80144174 TGATACAAAT
80144184 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80144210 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80144236 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80144262 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80144288 TGAT
1 TGAT
80144292 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80147394 original size:16 final size:16
Alignment explanation
Indices: 80147373--80147408 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
80147363 ATCACTAAAA
80147373 GCATTAGCACATACAT
1 GCATTAGCACATACAT
80147389 GCATTAGCACATACAT
1 GCATTAGCACATACAT
80147405 GCAT
1 GCAT
80147409 ATAAATAGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (16 bp):
GCATTAGCACATACAT
Found at i:80151823 original size:22 final size:22
Alignment explanation
Indices: 80151798--80151849 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
80151788 CACACGGCCG
80151798 TGTGCCTCCCTTCACACAGGCA
1 TGTGCCTCCCTTCACACAGGCA
80151820 TGTGCCTCCCTTCACACAGGCA
1 TGTGCCTCCCTTCACACAGGCA
80151842 TGTGCCTC
1 TGTGCCTC
80151850 TATCACATGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.15, C:0.40, G:0.19, T:0.25
Consensus pattern (22 bp):
TGTGCCTCCCTTCACACAGGCA
Done.