Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 245 of 325
Found at i:80154046 original size:16 final size:15
Alignment explanation
Indices: 80154027--80154086 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 15
80154017 TAATTAATTT
*
80154027 TTTTAAAATTTAAAAA
1 TTTTAAAA-ATAAAAA
80154043 TTTTAAAAATAAAAA
1 TTTTAAAAATAAAAA
80154058 TTATTAAAAAGTATAAAA
1 TT-TTAAAAA-TA-AAAA
* *
80154076 TATAAAAAATA
1 TTTTAAAAATA
80154087 TGATATTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
15 8 0.21
16 17 0.45
17 8 0.21
18 5 0.13
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (15 bp):
TTTTAAAAATAAAAA
Found at i:80159049 original size:19 final size:18
Alignment explanation
Indices: 80159020--80159057 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
80159010 AGATATATTT
*
80159020 TAAATTTATTTAGATAAA
1 TAAATTTATTTAAATAAA
80159038 TAAATCTTATTTAAATAAA
1 TAAAT-TTATTTAAATAAA
80159057 T
1 T
80159058 CTTAGAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (18 bp):
TAAATTTATTTAAATAAA
Found at i:80172901 original size:22 final size:21
Alignment explanation
Indices: 80172876--80172928 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 21
80172866 AATAAAATAT
80172876 AAATTAAAAATGCTATAA-CTTG
1 AAATTAAAAA-GCT-TAATCTTG
80172898 AAATTTTAAAAAGCTTAATCTTG
1 AAA--TTAAAAAGCTTAATCTTG
*
80172921 GAATTAAA
1 AAATTAAA
80172929 CCAAAGCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
21 5 0.19
22 6 0.22
23 9 0.33
24 7 0.26
ACGTcount: A:0.49, C:0.08, G:0.09, T:0.34
Consensus pattern (21 bp):
AAATTAAAAAGCTTAATCTTG
Found at i:80172908 original size:23 final size:23
Alignment explanation
Indices: 80172879--80172925 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
80172869 AAAATATAAA
80172879 TTAAAAATGCTATAA-CTTGAAATT
1 TTAAAAA-GCT-TAATCTTGAAATT
*
80172903 TTAAAAAGCTTAATCTTGGAATT
1 TTAAAAAGCTTAATCTTGAAATT
80172926 AAACCAAAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 3 0.14
23 11 0.52
24 7 0.33
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.38
Consensus pattern (23 bp):
TTAAAAAGCTTAATCTTGAAATT
Found at i:80181831 original size:21 final size:23
Alignment explanation
Indices: 80181785--80181832 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
80181775 TGGATGAAAT
80181785 ATAATTAAAAATATGATAGTTGAA
1 ATAATTAAAAATATGA-AGTTGAA
*
80181809 ATAATTAAAAGTATG-AG-TGAA
1 ATAATTAAAAATATGAAGTTGAA
80181830 ATA
1 ATA
80181833 TATATATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 7 0.30
22 2 0.09
24 14 0.61
ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31
Consensus pattern (23 bp):
ATAATTAAAAATATGAAGTTGAA
Found at i:80182481 original size:41 final size:41
Alignment explanation
Indices: 80182315--80182470 Score: 217
Period size: 41 Copynumber: 3.8 Consensus size: 41
80182305 TTTATCGTTA
* * * *
80182315 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
80182356 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGTCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
80182397 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
* *
80182438 GTGACACATTTCGGACTATAAGTCTACCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
80182471 AAGAGCCGGT
Statistics
Matches: 104, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 99 0.95
42 2 0.02
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:80182730 original size:30 final size:32
Alignment explanation
Indices: 80182689--80182764 Score: 99
Period size: 33 Copynumber: 2.5 Consensus size: 32
80182679 ATATGTATAT
80182689 ATATATATA-TGT-TGCATTCGGCATAGGTGA
1 ATATATATAGTGTATGCATTCGGCATAGGTGA
*
80182719 ATATATTTATGTGTATGCATTCGGCATAGGTGA
1 ATATATATA-GTGTATGCATTCGGCATAGGTGA
80182752 A-A-ATA-AGTGTATG
1 ATATATATAGTGTATG
80182765 TATCTATGCA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
29 7 0.17
30 9 0.22
31 2 0.05
32 4 0.10
33 19 0.46
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.37
Consensus pattern (32 bp):
ATATATATAGTGTATGCATTCGGCATAGGTGA
Found at i:80182743 original size:33 final size:32
Alignment explanation
Indices: 80182687--80182752 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 32
80182677 AGATATGTAT
80182687 ATATATATATATGTTGCATTCGGCATAGGTGA
1 ATATATATATATGTTGCATTCGGCATAGGTGA
* *
80182719 ATATATTTATGTGTATGCATTCGGCATAGGTGA
1 ATATATATATATGT-TGCATTCGGCATAGGTGA
80182752 A
1 A
80182753 AATAAGTGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.39
33 19 0.61
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.38
Consensus pattern (32 bp):
ATATATATATATGTTGCATTCGGCATAGGTGA
Found at i:80189456 original size:21 final size:23
Alignment explanation
Indices: 80189410--80189457 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
80189400 TGGATGAAAT
80189410 ATAATTAAAAATATGATAGTTGAA
1 ATAATTAAAAATATGA-AGTTGAA
*
80189434 ATAATTAAAAGTATG-AG-TGAA
1 ATAATTAAAAATATGAAGTTGAA
80189455 ATA
1 ATA
80189458 TATATATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 7 0.30
22 2 0.09
24 14 0.61
ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31
Consensus pattern (23 bp):
ATAATTAAAAATATGAAGTTGAA
Found at i:80190106 original size:41 final size:41
Alignment explanation
Indices: 80189940--80190095 Score: 235
Period size: 41 Copynumber: 3.8 Consensus size: 41
80189930 TTTATCGTTA
* * * *
80189940 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
80189981 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
80190022 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
80190063 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
80190096 AAGAGCCGGT
Statistics
Matches: 107, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 102 0.95
42 2 0.02
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:80192153 original size:22 final size:22
Alignment explanation
Indices: 80192127--80192190 Score: 112
Period size: 22 Copynumber: 2.9 Consensus size: 22
80192117 ATGAAAACTA
80192127 GAAAATTAAC-AATTAAGAAAAT
1 GAAAATTAACTAA-TAAGAAAAT
80192149 GAAAATTAACTAATAAGAAAAT
1 GAAAATTAACTAATAAGAAAAT
80192171 GAAAATTAACTAATAAGAAA
1 GAAAATTAACTAATAAGAAA
80192191 CAATTTTTGA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
22 39 0.95
23 2 0.05
ACGTcount: A:0.64, C:0.05, G:0.09, T:0.22
Consensus pattern (22 bp):
GAAAATTAACTAATAAGAAAAT
Found at i:80192157 original size:15 final size:15
Alignment explanation
Indices: 80192114--80192157 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
80192104 AAATTTCATA
*
80192114 AAAATGAAAACT-AG
1 AAAATGAAAATTAAG
*
80192128 AAAATTAACAATTAAG
1 AAAATGAA-AATTAAG
80192144 AAAATGAAAATTAA
1 AAAATGAAAATTAA
80192158 CTAATAAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 7 0.28
15 9 0.36
16 9 0.36
ACGTcount: A:0.66, C:0.05, G:0.09, T:0.20
Consensus pattern (15 bp):
AAAATGAAAATTAAG
Found at i:80195676 original size:22 final size:22
Alignment explanation
Indices: 80195648--80195705 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
80195638 TACTGTATCA
80195648 AATGTTGCGACTTCT-AGTGT-T
1 AATGTTGCGACTTCTAAG-GTCT
80195669 GAATGTTGCGAC-TCTAAGGTCT
1 -AATGTTGCGACTTCTAAGGTCT
*
80195691 AATGTTACGACTTCT
1 AATGTTGCGACTTCT
80195706 TGCTTCTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 15 0.47
22 17 0.53
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.38
Consensus pattern (22 bp):
AATGTTGCGACTTCTAAGGTCT
Found at i:80198309 original size:136 final size:136
Alignment explanation
Indices: 80198065--80198310 Score: 330
Period size: 136 Copynumber: 1.8 Consensus size: 136
80198055 ATGGGCCTAT
* * **
80198065 TCACACAAGTTGTCGGTCGGAACGTAGCTACACGGTGCTGCTCCGTAAGCTGTCGAGTATCCACA
1 TCACACAAGCTGTCGGTCGGAACGTAGCTACACGGTGCTGATCCACAAGCTGTCGAGTATCCACA
* * *
80198130 ACAAATGCCAAAACTTAGCCACCGGTAGAATATTCAAAACCAGCACCCGAAATATGGTAACCTGG
66 ACAAATGCCAAAACTCAGCCACCAGTAGAACATTCAAAACCAGCACCCGAAATATGGTAACCTGG
80198195 GTTTGG
131 GTTTGG
* * * * * **
80198201 TCACACATGCTGTTGGTCGGAATGTAGCTACACGGTGCTGATTCACAAGCTGTCGAGTATTCGTA
1 TCACACAAGCTGTCGGTCGGAACGTAGCTACACGGTGCTGATCCACAAGCTGTCGAGTATCCACA
* * * *
80198266 ACAAATGTCAGAACTCAGCCACCAGTAGGACATTCAAGACCAGCA
66 ACAAATGCCAAAACTCAGCCACCAGTAGAACATTCAAAACCAGCA
80198311 TCCAAAACAT
Statistics
Matches: 92, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
136 92 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (136 bp):
TCACACAAGCTGTCGGTCGGAACGTAGCTACACGGTGCTGATCCACAAGCTGTCGAGTATCCACA
ACAAATGCCAAAACTCAGCCACCAGTAGAACATTCAAAACCAGCACCCGAAATATGGTAACCTGG
GTTTGG
Found at i:80206125 original size:21 final size:21
Alignment explanation
Indices: 80206101--80206146 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
80206091 TTTCTCAACA
*
80206101 AAAAAAATACAAAAT-TATTTT
1 AAAAAAATA-AAAATAAATTTT
*
80206122 AAAAAATTAAAAATAAATTTT
1 AAAAAAATAAAAATAAATTTT
80206143 AAAA
1 AAAA
80206147 TTCGAAACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (21 bp):
AAAAAAATAAAAATAAATTTT
Found at i:80206176 original size:18 final size:19
Alignment explanation
Indices: 80206143--80206179 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
80206133 AATAAATTTT
*
80206143 AAAATTCGAAACATTTATA
1 AAAATTCCAAACATTTATA
80206162 AAAATTCCAAA-ATTTATA
1 AAAATTCCAAACATTTATA
80206180 TTTTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.54, C:0.11, G:0.03, T:0.32
Consensus pattern (19 bp):
AAAATTCCAAACATTTATA
Found at i:80206198 original size:25 final size:26
Alignment explanation
Indices: 80206156--80206204 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
80206146 ATTCGAAACA
* *
80206156 TTTATAAAAATTCCAAAATTTATATT
1 TTTATAAAAATTACAAAAATTATATT
*
80206182 TTTA-AAAAATTATAAAAATTATA
1 TTTATAAAAATTACAAAAATTATA
80206205 AAAAATTCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (26 bp):
TTTATAAAAATTACAAAAATTATATT
Found at i:80206199 original size:10 final size:10
Alignment explanation
Indices: 80206184--80206230 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
80206174 TTTATATTTT
80206184 TAAAAAATTA
1 TAAAAAATTA
80206194 T-AAAAATTA
1 TAAAAAATTA
*
80206203 TAAAAAATTC
1 TAAAAAATTA
*
80206213 TAAAGAATATA
1 TAAAAAAT-TA
80206224 TAAAAAA
1 TAAAAAA
80206231 GTTAATAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
9 9 0.29
10 15 0.48
11 7 0.23
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:80206208 original size:19 final size:21
Alignment explanation
Indices: 80206184--80206230 Score: 71
Period size: 19 Copynumber: 2.3 Consensus size: 21
80206174 TTTATATTTT
80206184 TAAAAAATTATAAA-AAT-TA
1 TAAAAAATTATAAAGAATATA
*
80206203 TAAAAAATTCTAAAGAATATA
1 TAAAAAATTATAAAGAATATA
80206224 TAAAAAA
1 TAAAAAA
80206231 GTTAATAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 13 0.52
20 3 0.12
21 9 0.36
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (21 bp):
TAAAAAATTATAAAGAATATA
Found at i:80206253 original size:39 final size:40
Alignment explanation
Indices: 80206184--80206260 Score: 95
Period size: 39 Copynumber: 1.9 Consensus size: 40
80206174 TTTATATTTT
*
80206184 TAAAAAATTATAAAAATTATAAAAAATTCTAAAGAATATA
1 TAAAAAAGTATAAAAATTATAAAAAATTCTAAAGAATATA
* * *
80206224 TAAAAAAGT-TAATAATT-TAAAAATTTTCTAAATAATA
1 TAAAAAAGTATAAAAATTATAAAAA-ATTCTAAAGAATA
80206261 ATGTTAGGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
38 6 0.19
39 18 0.56
40 8 0.25
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (40 bp):
TAAAAAAGTATAAAAATTATAAAAAATTCTAAAGAATATA
Found at i:80215303 original size:28 final size:29
Alignment explanation
Indices: 80215272--80215328 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
80215262 ATCCGAAATT
*
80215272 CTGATAT-CATGGCCCGAAGCCAAATCAG
1 CTGATATGCATGGCCCAAAGCCAAATCAG
*
80215300 CTGATATGCATGGCTCAAAGCCAAATCAG
1 CTGATATGCATGGCCCAAAGCCAAATCAG
80215329 TATCTCTCGC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 7 0.27
29 19 0.73
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.19
Consensus pattern (29 bp):
CTGATATGCATGGCCCAAAGCCAAATCAG
Found at i:80219124 original size:32 final size:33
Alignment explanation
Indices: 80219067--80219193 Score: 150
Period size: 33 Copynumber: 3.9 Consensus size: 33
80219057 CTTCATTCTG
* * *
80219067 TGTTTACTATCCCAGTGGACTATCTCTATTATT
1 TGTTTACTGTCCCAGCGGACTATCTCTATTATA
* *
80219100 TGTTTACTGT-CTAGCGGACTATCTCTATTATG
1 TGTTTACTGTCCCAGCGGACTATCTCTATTATA
* *
80219132 TGTTTA-TGGTCCCAGCGGACTATCTCTGTTCTA
1 TGTTTACT-GTCCCAGCGGACTATCTCTATTATA
* *
80219165 TGTTTACTATCCCAGCGAACTATCTCTAT
1 TGTTTACTGTCCCAGCGGACTATCTCTAT
80219194 GGATGCCATG
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
31 1 0.01
32 27 0.34
33 51 0.64
34 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTTTACTGTCCCAGCGGACTATCTCTATTATA
Found at i:80219136 original size:65 final size:66
Alignment explanation
Indices: 80219065--80219193 Score: 163
Period size: 65 Copynumber: 2.0 Consensus size: 66
80219055 ATCTTCATTC
* * * * *
80219065 TGTGTTTACT-ATCCCAGTGGACTATCTCTATTATTTGTTTACTGT-CTAGCGGACTATCTCTAT
1 TGTGTTTA-TGATCCCAGCGGACTATCTCTATTATATGTTTACTATCCCAGCGAACTATCTCTAT
80219128 TA
65 TA
* * *
80219130 TGTGTTTATGGTCCCAGCGGACTATCTCTGTTCTATGTTTACTATCCCAGCGAACTATCTCTAT
1 TGTGTTTATGATCCCAGCGGACTATCTCTATTATATGTTTACTATCCCAGCGAACTATCTCTAT
80219194 GGATGCCATG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
64 1 0.02
65 37 0.69
66 16 0.30
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.42
Consensus pattern (66 bp):
TGTGTTTATGATCCCAGCGGACTATCTCTATTATATGTTTACTATCCCAGCGAACTATCTCTATT
A
Found at i:80220656 original size:81 final size:81
Alignment explanation
Indices: 80220521--80220749 Score: 298
Period size: 81 Copynumber: 2.8 Consensus size: 81
80220511 GACGACATAA
* *
80220521 CTTCGGTTATATATGGCACTTAGTGTGCGATTCGACATAG-TGTTGGCTATATATGACACTTAGT
1 CTTCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT-TCGGCTATATATGACACTTAGT
80220585 GTACAAGATCAAGATAG
65 GTACAAGATCAAGATAG
* * *
80220602 CTTCGGCTATATATGGTACTTAGTGTGTGATTTGACATAGCTTCGGCTATATATGACACTTAGTG
1 CTTCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATATGACACTTAGTG
* * *
80220667 TGCGAGATCGAGATAG
66 TACAAGATCAAGATAG
* ** * * * *
80220683 CTTCGACTATATATTACACTTAATGTGCGAGGTCGAGATAGCTTCGGCTATATATGGCACTTAGT
1 CTTCGGCTATATATGGCACTTAGTGTGCGA-TTCGACATAGCTTCGGCTATATATGACACTTAGT
80220748 GT
65 GT
80220750 GCGTTTTGAG
Statistics
Matches: 128, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
81 95 0.74
82 33 0.26
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (81 bp):
CTTCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATATGACACTTAGTG
TACAAGATCAAGATAG
Found at i:80220736 original size:122 final size:122
Alignment explanation
Indices: 80220514--80220796 Score: 347
Period size: 122 Copynumber: 2.3 Consensus size: 122
80220504 CATGTTCGAC
* * * * *
80220514 GACATAACTTCGGTTATATATGGCACTTAGTGTGCGA-TTCGACATAGTGTTGGCTATATATGAC
1 GACATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGATCGACATAGTGTCGACTATATATGAC
* * *
80220578 ACTTAGTGTACAAGATCAAGATAGCTTCGGCTATATATGGTACTTAGTGTGTGATTT
66 ACTTAATGTACAAGATCAAGATAGCTTCGGCTATATATGGCACTTAGTGTGCGATTT
* * *
80220635 GACATAGCTTCGGCTATATATGACACTTAGTGTGCGAGATCGAGATAGCT-TCGACTATATATTA
1 GACATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGATCGACATAG-TGTCGACTATATATGA
* * * * *
80220699 CACTTAATGTGCGAGGTCGAGATAGCTTCGGCTATATATGGCACTTAGTGTGCGTTTT
65 CACTTAATGTACAAGATCAAGATAGCTTCGGCTATATATGGCACTTAGTGTGCGATTT
* ** *
80220757 GAGATAGCTTCCACTA-AGTATGGCACTTAGTGTGTGAGAT
1 GACATAGCTTCGGCTATA-TATGGCACTTAGTGTGCGAGAT
80220797 ACCTAGTATT
Statistics
Matches: 138, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
121 35 0.25
122 102 0.74
123 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.34
Consensus pattern (122 bp):
GACATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGATCGACATAGTGTCGACTATATATGAC
ACTTAATGTACAAGATCAAGATAGCTTCGGCTATATATGGCACTTAGTGTGCGATTT
Found at i:80220779 original size:40 final size:41
Alignment explanation
Indices: 80220521--80220790 Score: 280
Period size: 41 Copynumber: 6.7 Consensus size: 41
80220511 GACGACATAA
* *
80220521 CTTCGGTTATATATGGCACTTAGTGTGCGA-TTCGACATAG
1 CTTCGGCTATATATGGCACTTAGTGTGCGAGTTCGAGATAG
* * * * * *
80220561 -TGTTGGCTATATATGACACTTAGTGTACAAGATCAAGATAG
1 CT-TCGGCTATATATGGCACTTAGTGTGCGAGTTCGAGATAG
* * * *
80220602 CTTCGGCTATATATGGTACTTAGTGTGTGA-TTTGACATAG
1 CTTCGGCTATATATGGCACTTAGTGTGCGAGTTCGAGATAG
* *
80220642 CTTCGGCTATATATGACACTTAGTGTGCGAGATCGAGATAG
1 CTTCGGCTATATATGGCACTTAGTGTGCGAGTTCGAGATAG
* ** * *
80220683 CTTCGACTATATATTACACTTAATGTGCGAGGTCGAGATAG
1 CTTCGGCTATATATGGCACTTAGTGTGCGAGTTCGAGATAG
* *
80220724 CTTCGGCTATATATGGCACTTAGTGTGCG-TTTTGAGATAG
1 CTTCGGCTATATATGGCACTTAGTGTGCGAGTTCGAGATAG
**
80220764 CTTCCACTA-AGTATGGCACTTAGTGTG
1 CTTCGGCTATA-TATGGCACTTAGTGTG
80220791 TGAGATACCT
Statistics
Matches: 188, Mismatches: 37, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
39 2 0.01
40 87 0.46
41 98 0.52
42 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (41 bp):
CTTCGGCTATATATGGCACTTAGTGTGCGAGTTCGAGATAG
Found at i:80225264 original size:21 final size:21
Alignment explanation
Indices: 80225238--80225283 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
80225228 TAGTTAAAGG
80225238 ATTAAATTGATATAATATTAA
1 ATTAAATTGATATAATATTAA
80225259 ATTAAATTGATATAATATTAA
1 ATTAAATTGATATAATATTAA
80225280 ATTA
1 ATTA
80225284 GGCATGAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.43
Consensus pattern (21 bp):
ATTAAATTGATATAATATTAA
Found at i:80228899 original size:18 final size:17
Alignment explanation
Indices: 80228869--80228902 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
80228859 ATGAAAAGTG
*
80228869 TAAATAAAAATAAAAAT
1 TAAAAAAAAATAAAAAT
80228886 TAAAAAAAATATAAAAA
1 TAAAAAAAA-ATAAAAA
80228903 CAAAAGGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
TAAAAAAAAATAAAAAT
Found at i:80230522 original size:18 final size:18
Alignment explanation
Indices: 80230501--80230537 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
80230491 AAATAAGAGT
*
80230501 AATATTAGTAATAATAAA
1 AATAATAGTAATAATAAA
80230519 AATAATAGTAATAATAAA
1 AATAATAGTAATAATAAA
80230537 A
1 A
80230538 TGATTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (18 bp):
AATAATAGTAATAATAAA
Found at i:80230734 original size:11 final size:12
Alignment explanation
Indices: 80230706--80230738 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
80230696 GAAGGAGGAA
80230706 AAAAGAGAAAGGG
1 AAAAGA-AAAGGG
80230719 AAAAGAAAAGGG
1 AAAAGAAAAGGG
80230731 -AAAGAAAA
1 AAAAGAAAA
80230739 ATGGAGAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.40
12 6 0.30
13 6 0.30
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAGGG
Found at i:80232255 original size:24 final size:24
Alignment explanation
Indices: 80232228--80232277 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
80232218 AGTTTAGGAA
*
80232228 TTTTATAGCCCAAAATGCTTTATG
1 TTTTATAGCCCAAAATACTTTATG
*
80232252 TTTTATAGCTCAAAATACTTTATG
1 TTTTATAGCCCAAAATACTTTATG
80232276 TT
1 TT
80232278 CTAGTTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.30, C:0.14, G:0.10, T:0.46
Consensus pattern (24 bp):
TTTTATAGCCCAAAATACTTTATG
Found at i:80240573 original size:13 final size:13
Alignment explanation
Indices: 80240538--80240638 Score: 89
Period size: 13 Copynumber: 7.8 Consensus size: 13
80240528 GTTAAATTTG
80240538 TATATGAAATGAT
1 TATATGAAATGAT
* * * *
80240551 AAAATAAAATGTT
1 TATATGAAATGAT
*
80240564 TAGATGAAATG-T
1 TATATGAAATGAT
*
80240576 TATACGAAATGAT
1 TATATGAAATGAT
*
80240589 TATATGGAATGAT
1 TATATGAAATGAT
* *
80240602 TACATGAAATGCT
1 TATATGAAATGAT
80240615 TATATGAAATTG-T
1 TATATGAAA-TGAT
80240628 TATATGGAAAT
1 TATAT-GAAAT
80240639 AGATGTATAA
Statistics
Matches: 70, Mismatches: 15, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
12 10 0.14
13 54 0.77
14 6 0.09
ACGTcount: A:0.45, C:0.03, G:0.17, T:0.36
Consensus pattern (13 bp):
TATATGAAATGAT
Found at i:80240631 original size:39 final size:38
Alignment explanation
Indices: 80240558--80240636 Score: 106
Period size: 39 Copynumber: 2.1 Consensus size: 38
80240548 GATAAAATAA
* *
80240558 AATGTTTAGATGAAATGTTATACGAAATGATTATATGG
1 AATGATTACATGAAATGTTATACGAAATGATTATATGG
*
80240596 AATGATTACATGAAATGCTTATATGAAATTG-TTATATGG
1 AATGATTACATGAAATG-TTATACGAAA-TGATTATATGG
80240635 AA
1 AA
80240637 ATAGATGTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
38 15 0.42
39 19 0.53
40 2 0.06
ACGTcount: A:0.41, C:0.04, G:0.19, T:0.37
Consensus pattern (38 bp):
AATGATTACATGAAATGTTATACGAAATGATTATATGG
Found at i:80241656 original size:38 final size:38
Alignment explanation
Indices: 80241569--80241763 Score: 230
Period size: 38 Copynumber: 5.0 Consensus size: 38
80241559 AAACCCAAAC
* * ** *
80241569 ATAACACCAGCACGAAGCCTACGGGACTTTAAATTCAGAT
1 ATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGAT
* *
80241609 ATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
80241647 ATAATACCAGCACGAAGCCTGCGAGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
80241685 ATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* * *
80241723 ATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGAT
1 ATAATACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGAT
80241763 A
1 A
80241764 CACATCAAAT
Statistics
Matches: 136, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
37 1 0.01
38 97 0.71
39 8 0.06
40 30 0.22
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:80255525 original size:10 final size:10
Alignment explanation
Indices: 80255510--80255541 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
80255500 TAAATACATT
80255510 TAATTAAAGA
1 TAATTAAAGA
80255520 TAATTAAAGA
1 TAATTAAAGA
80255530 TAATTAAA-A
1 TAATTAAAGA
80255539 TAA
1 TAA
80255542 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:80255567 original size:27 final size:26
Alignment explanation
Indices: 80255537--80255599 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
80255527 AGATAATTAA
80255537 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
80255564 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
80255591 AATATAAAT
1 AATA-AAAT
80255600 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:80255586 original size:15 final size:15
Alignment explanation
Indices: 80255566--80255595 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80255556 ATAATCCTAA
*
80255566 TAATTATCTTAATAT
1 TAATTATCCTAATAT
80255581 TAATTATCCTAATAT
1 TAATTATCCTAATAT
80255596 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:80257127 original size:14 final size:14
Alignment explanation
Indices: 80257096--80257142 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
80257086 TTAATATCTG
80257096 AAAATAATAAATAAT
1 AAAATAATAAA-AAT
*
80257111 AAAATAATAAGAAT
1 AAAATAATAAAAAT
80257125 -AAATAAATAAAAAT
1 AAAAT-AATAAAAAT
80257139 AAAA
1 AAAA
80257143 ATTATGTTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 4 0.14
14 11 0.39
15 13 0.46
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (14 bp):
AAAATAATAAAAAT
Found at i:80268914 original size:108 final size:110
Alignment explanation
Indices: 80268696--80268967 Score: 270
Period size: 108 Copynumber: 2.5 Consensus size: 110
80268686 TTGCTAACTA
* * * * *
80268696 GACTGACAA-ATCACGATATGAAGATATGCGTAAGTCTATGTGGTAGAGACCCATGACATTATAT
1 GACTGA-AAGATCACAACATGAAGAGATGTGTAAGTCTATGTGGTAGAGACCCATGACATAATAT
* *
80268760 GACAATGAAAACACTTATGCTATTGCCTCCAGTGAGATGAAGACTG
65 GACAATGAAAACACTCATGCTATTGCCTCCAGTAAGATGAAGACTG
* * *
80268806 GACT-AGCAGATCACAACAT-AAG-GATGTGTAAGTCTATGTGGTTGAGACCCATGGCATAATAT
1 GACTGA-AAGATCACAACATGAAGAGATGTGTAAGTCTATGTGGTAGAGACCCATGACATAATAT
* * * * *
80268868 GATAAT-AAAATTACTCATGGTGA-TGCCTTCAGTAATATGTAA-ACTG
65 GACAATGAAAA-CACTCATGCT-ATTGCCTCCAGTAAGATG-AAGACTG
* * * * *
80268914 GACTGAAAGATCACGACATGAAGATATGTGTAAGTCTATGAGGGAGAAACCCAT
1 GACTGAAAGATCACAACATGAAGAGATGTGTAAGTCTATGTGGTAGAGACCCAT
80268968 AGCACCTACT
Statistics
Matches: 132, Mismatches: 23, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
107 4 0.03
108 79 0.60
109 12 0.09
110 37 0.28
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (110 bp):
GACTGAAAGATCACAACATGAAGAGATGTGTAAGTCTATGTGGTAGAGACCCATGACATAATATG
ACAATGAAAACACTCATGCTATTGCCTCCAGTAAGATGAAGACTG
Found at i:80269041 original size:59 final size:59
Alignment explanation
Indices: 80268976--80269140 Score: 213
Period size: 59 Copynumber: 2.8 Consensus size: 59
80268966 ATAGCACCTA
* * *
80268976 CTATGAAAGTCCGTTGGGACTGTAAACACATCATTCTGTGTGTTGCCCCATAACAACTT
1 CTATGAAAGTCCGTTGGGACAGTAAACACATGATTTTGTGTGTTGCCCCATAACAACTT
* * * *
80269035 CTATGAAAGTCTGTCGGGACAGTAAACACATGATTTTGTGTGTTGCCCCATGACACCTT
1 CTATGAAAGTCCGTTGGGACAGTAAACACATGATTTTGTGTGTTGCCCCATAACAACTT
* * * * * *
80269094 TTGTGAAAGTCCGCTGGGACAATAAACTCGTGATTTTGTGTGTTGCC
1 CTATGAAAGTCCGTTGGGACAGTAAACACATGATTTTGTGTGTTGCC
80269141 TATATGGCGT
Statistics
Matches: 91, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
59 91 1.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (59 bp):
CTATGAAAGTCCGTTGGGACAGTAAACACATGATTTTGTGTGTTGCCCCATAACAACTT
Found at i:80273637 original size:14 final size:14
Alignment explanation
Indices: 80273618--80273661 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
80273608 ATTGTTTAAT
80273618 AAATTTATTTTTTA
1 AAATTTATTTTTTA
80273632 AAATTTAATTTTATTA
1 AAATTT-ATTTT-TTA
* *
80273648 ATATTTATATTTTA
1 AAATTTATTTTTTA
80273662 TTTTATCTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 9 0.35
15 9 0.35
16 8 0.31
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
AAATTTATTTTTTA
Found at i:80273674 original size:17 final size:17
Alignment explanation
Indices: 80273623--80273663 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
80273613 TTAATAAATT
*
80273623 TATTTT-TTAAAATTTA
1 TATTTTATTAATATTTA
80273639 -ATTTTATTAATATTTA
1 TATTTTATTAATATTTA
80273655 TATTTTATT
1 TATTTTATT
80273664 TTATCTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 5 0.23
16 9 0.41
17 8 0.36
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TATTTTATTAATATTTA
Found at i:80274236 original size:9 final size:9
Alignment explanation
Indices: 80274210--80274331 Score: 59
Period size: 10 Copynumber: 12.6 Consensus size: 9
80274200 CTCTCTCAAC
80274210 AAAATTTATAA
1 AAAATTT-T-A
80274221 AATAATTTTA
1 AA-AATTTTA
80274231 AAAATTTTTA
1 AAAA-TTTTA
* *
80274241 AAAAATTCA
1 AAAATTTTA
80274250 AATAATTTTA
1 AA-AATTTTA
*
80274260 AAAA-ATTA
1 AAAATTTTA
80274268 AAATATTTATA
1 AAA-ATTT-TA
*
80274279 ACAATTTTAAA
1 AAAATTTT--A
*
80274290 AAAATATATA
1 AAAAT-TTTA
*
80274300 AAAAATTT-
1 AAAATTTTA
* *
80274308 AAGATTTTT
1 AAAATTTTA
80274317 AAAATTTTCA
1 AAAATTTT-A
80274327 AAAAT
1 AAAAT
80274332 AATAATTTTA
Statistics
Matches: 85, Mismatches: 15, Indels: 23
0.69 0.12 0.19
Matches are distributed among these distances:
8 12 0.14
9 20 0.24
10 34 0.40
11 12 0.14
12 7 0.08
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.39
Consensus pattern (9 bp):
AAAATTTTA
Found at i:80274275 original size:18 final size:18
Alignment explanation
Indices: 80274231--80274275 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 18
80274221 AATAATTTTA
80274231 AAAAT-TTTTAAAAAATT
1 AAAATATTTTAAAAAATT
*
80274248 CAAATAATTTTAAAAAATT
1 AAAAT-ATTTTAAAAAATT
80274267 AAAATATTT
1 AAAATATTT
80274276 ATAACAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 4 0.17
18 4 0.17
19 16 0.67
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAATATTTTAAAAAATT
Found at i:80274681 original size:13 final size:13
Alignment explanation
Indices: 80274663--80274687 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80274653 AGATGGTGCA
80274663 TATATGAAATATG
1 TATATGAAATATG
80274676 TATATGAAATAT
1 TATATGAAATAT
80274688 AAATGAGGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (13 bp):
TATATGAAATATG
Found at i:80277812 original size:13 final size:14
Alignment explanation
Indices: 80277794--80277823 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
80277784 TTATTCATCG
80277794 ATCTCTTCCTC-AA
1 ATCTCTTCCTCGAA
80277807 ATCTCTTCCTCGAA
1 ATCTCTTCCTCGAA
80277821 ATC
1 ATC
80277824 AGCCTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.23, C:0.37, G:0.03, T:0.37
Consensus pattern (14 bp):
ATCTCTTCCTCGAA
Found at i:80280328 original size:40 final size:40
Alignment explanation
Indices: 80280280--80280368 Score: 110
Period size: 40 Copynumber: 2.2 Consensus size: 40
80280270 TTGGTATCAT
**
80280280 ACACTTAGTACCT-TATATAGCCGAAGCTA-TTCTATTTCGC
1 ACACTTAGT-CCTATATATAGCCGAAGCTATTTC-AAATCGC
* *
80280320 ACACTTAGTGCTATTTATAGCCGAAGCTATTTCAAATCGC
1 ACACTTAGTCCTATATATAGCCGAAGCTATTTCAAATCGC
80280360 ACACTTAGT
1 ACACTTAGT
80280369 GTCGAACATA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
39 2 0.05
40 38 0.88
41 3 0.07
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (40 bp):
ACACTTAGTCCTATATATAGCCGAAGCTATTTCAAATCGC
Found at i:80281596 original size:50 final size:50
Alignment explanation
Indices: 80281513--80281750 Score: 327
Period size: 50 Copynumber: 4.8 Consensus size: 50
80281503 GGGCGGTTAC
* *
80281513 ATGAGAGCTAATGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAT
* ** * *
80281563 ATGGGAGCTAGTGTAAGACCATGTCTGACACATGGCATCGGTCTTGAGAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAT
* *
80281613 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGAT
* *
80281663 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATAT
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAT
**
80281713 ACAAGAG-TCAGTGTAAGACCATGTCTGGGACATGGCAT
1 ATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCAT
80281751 TGACTTTGAT
Statistics
Matches: 168, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
49 1 0.01
50 166 0.99
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (50 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAT
Found at i:80284448 original size:12 final size:12
Alignment explanation
Indices: 80284433--80284457 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80284423 CATATCAAGT
80284433 TACATGTTCATA
1 TACATGTTCATA
80284445 TACATGTTCATA
1 TACATGTTCATA
80284457 T
1 T
80284458 TGCCATTTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (12 bp):
TACATGTTCATA
Found at i:80293678 original size:40 final size:40
Alignment explanation
Indices: 80293623--80293713 Score: 139
Period size: 40 Copynumber: 2.3 Consensus size: 40
80293613 CGTTTGAATG
**
80293623 AAAAACGCCACTAAAGAAT-GAGCATTAGCGGCGCTTTTTT
1 AAAAACGCTGCTAAAG-ATCGAGCATTAGCGGCGCTTTTTT
*
80293663 AAAAACGCTGCTAAAGATCGAGTATTAGCGGCGCTTTTTT
1 AAAAACGCTGCTAAAGATCGAGCATTAGCGGCGCTTTTTT
80293703 AAAAACGCTGC
1 AAAAACGCTGC
80293714 CATATGTAGA
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
39 2 0.04
40 45 0.96
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (40 bp):
AAAAACGCTGCTAAAGATCGAGCATTAGCGGCGCTTTTTT
Found at i:80293731 original size:40 final size:40
Alignment explanation
Indices: 80293646--80293750 Score: 117
Period size: 40 Copynumber: 2.6 Consensus size: 40
80293636 AAGAATGAGC
* * *
80293646 ATTAGCGGCGCTTTTTTAAAAACGCTGCTAAAGATCGAGT
1 ATTAGCGGCGCTTTTTTAAAAACGCTGCCAAAGATAGACT
*
80293686 ATTAGCGGCGCTTTTTTAAAAACGCTGCCATATG-TAGACCT
1 ATTAGCGGCGCTTTTTTAAAAACGCTGCCA-AAGATAGA-CT
*
80293727 -TTAGCGGCAG-TTTTTAAAAAACGC
1 ATTAGCGGC-GCTTTTTTAAAAACGC
80293751 CGCTAACGCC
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
40 53 0.93
41 4 0.07
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (40 bp):
ATTAGCGGCGCTTTTTTAAAAACGCTGCCAAAGATAGACT
Found at i:80294332 original size:22 final size:22
Alignment explanation
Indices: 80294307--80294351 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
80294297 GAGTTACTAT
* *
80294307 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAAGGG
* *
80294329 TTTAGGGATTATGGTTTAAGGG
1 TTTAAGGATTATGGATTAAGGG
80294351 T
1 T
80294352 GGTTTAATGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (22 bp):
TTTAAGGATTATGGATTAAGGG
Found at i:80294350 original size:15 final size:15
Alignment explanation
Indices: 80294312--80294346 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
80294302 ACTATTTTAA
*
80294312 GGTTTATGGATTATG
1 GGTTTAGGGATTATG
80294327 GGTTTAGGGATTAT-
1 GGTTTAGGGATTATG
80294341 GGTTTA
1 GGTTTA
80294347 AGGGTGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (15 bp):
GGTTTAGGGATTATG
Found at i:80294418 original size:14 final size:14
Alignment explanation
Indices: 80294374--80294449 Score: 55
Period size: 14 Copynumber: 5.4 Consensus size: 14
80294364 GGGGTTTAAC
80294374 GTTTA-GGTGTTAGG
1 GTTTATGGT-TTAGG
* * *
80294388 GGTTAAGGGTTAGGG
1 GTTTATGGTTTA-GG
*
80294403 GTTCATGGTTTAGG
1 GTTTATGGTTTAGG
* *
80294417 GTTTATGTTTTAAG
1 GTTTATGGTTTAGG
* *
80294431 ATTTATAGTTTAGG
1 GTTTATGGTTTAGG
80294445 GTTTA
1 GTTTA
80294450 GAGATTAAAG
Statistics
Matches: 46, Mismatches: 14, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
14 34 0.74
15 12 0.26
ACGTcount: A:0.20, C:0.01, G:0.34, T:0.45
Consensus pattern (14 bp):
GTTTATGGTTTAGG
Found at i:80294463 original size:28 final size:28
Alignment explanation
Indices: 80294410--80294463 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
80294400 GGGGTTCATG
* * *
80294410 GTTTAGGGTTTATGTTTTAAGATTTATA
1 GTTTAGGGTTTAAGATTAAAGATTTATA
80294438 GTTTAGGGTTTAGAGATTAAAG-TTTA
1 GTTTAGGGTTTA-AGATTAAAGATTTA
80294464 GGGTTTAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 16 0.73
29 6 0.27
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (28 bp):
GTTTAGGGTTTAAGATTAAAGATTTATA
Found at i:80294663 original size:22 final size:22
Alignment explanation
Indices: 80294609--80294660 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
80294599 TATGGTTAAA
80294609 GGTTTAAGGTTTATGAATTACT
1 GGTTTAAGGTTTATGAATTACT
**
80294631 ATTTTAAGGTTTATGAATTA-T
1 GGTTTAAGGTTTATGAATTACT
80294652 GGTTTAAGG
1 GGTTTAAGG
80294661 GTTGTGATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 8 0.31
22 18 0.69
ACGTcount: A:0.29, C:0.02, G:0.23, T:0.46
Consensus pattern (22 bp):
GGTTTAAGGTTTATGAATTACT
Found at i:80294693 original size:21 final size:21
Alignment explanation
Indices: 80294669--80294714 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
80294659 GGGTTGTGAT
* * *
80294669 TTAAGGTTTAGTGGTTAGGGG
1 TTAAGGGTTAGGGGTTAAGGG
80294690 TTAAGGGTTAGGGGTTAAGGG
1 TTAAGGGTTAGGGGTTAAGGG
80294711 TTAA
1 TTAA
80294715 TGGCTTATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.41, T:0.35
Consensus pattern (21 bp):
TTAAGGGTTAGGGGTTAAGGG
Found at i:80294700 original size:14 final size:14
Alignment explanation
Indices: 80294681--80294713 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
80294671 AAGGTTTAGT
80294681 GGTTAGGGGTTAAG
1 GGTTAGGGGTTAAG
80294695 GGTTAGGGGTTAAG
1 GGTTAGGGGTTAAG
80294709 GGTTA
1 GGTTA
80294714 ATGGCTTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.48, T:0.30
Consensus pattern (14 bp):
GGTTAGGGGTTAAG
Found at i:80294714 original size:7 final size:7
Alignment explanation
Indices: 80294681--80294714 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
80294671 AAGGTTTAGT
*
80294681 GGTTAGG
1 GGTTAAG
80294688 GGTTAAG
1 GGTTAAG
*
80294695 GGTTAGG
1 GGTTAAG
80294702 GGTTAAG
1 GGTTAAG
80294709 GGTTAA
1 GGTTAA
80294715 TGGCTTATGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.24, C:0.00, G:0.47, T:0.29
Consensus pattern (7 bp):
GGTTAAG
Found at i:80295077 original size:19 final size:18
Alignment explanation
Indices: 80295050--80295098 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
80295040 AAAAATATTG
*
80295050 ATAACAAATAAAAATAAA
1 ATAAAAAATAAAAATAAA
*
80295068 ATACAAAAATAAAAATGAA
1 ATA-AAAAATAAAAATAAA
*
80295087 ATATAAAATAAA
1 ATAAAAAATAAA
80295099 GATTAGTGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 11 0.41
19 16 0.59
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.18
Consensus pattern (18 bp):
ATAAAAAATAAAAATAAA
Found at i:80295662 original size:23 final size:23
Alignment explanation
Indices: 80295636--80295682 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
80295626 TTGGTTGATA
*
80295636 TAATTTTCAGGTAGTTGTTTCTT
1 TAATTTTCAGGTAGTTGTTGCTT
80295659 TAATTTTCAGGTAGTTGTTGCTT
1 TAATTTTCAGGTAGTTGTTGCTT
80295682 T
1 T
80295683 TCTTTCTCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.09, G:0.19, T:0.55
Consensus pattern (23 bp):
TAATTTTCAGGTAGTTGTTGCTT
Found at i:80309072 original size:23 final size:23
Alignment explanation
Indices: 80309046--80309095 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
80309036 TGATTTTTAA
80309046 ATTTTA-ATTTATTTAGTGATAAT
1 ATTTTAGA-TTATTTAGTGATAAT
80309069 A-TTTAGGATTATTTAGTGATAAT
1 ATTTTA-GATTATTTAGTGATAAT
80309092 ATTT
1 ATTT
80309096 AGGAAAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 4 0.17
23 17 0.71
24 3 0.12
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (23 bp):
ATTTTAGATTATTTAGTGATAAT
Found at i:80309073 original size:13 final size:13
Alignment explanation
Indices: 80309055--80309097 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
80309045 AATTTTAATT
80309055 TATTTAGTGATAA
1 TATTTAGTGATAA
80309068 TATTTAG-GAT--
1 TATTTAGTGATAA
80309078 TATTTAGTGATAA
1 TATTTAGTGATAA
80309091 TATTTAG
1 TATTTAG
80309098 GAAAAATCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.26
11 3 0.11
12 3 0.11
13 14 0.52
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:80309096 original size:23 final size:23
Alignment explanation
Indices: 80309054--80309099 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
80309044 AAATTTTAAT
80309054 TTATTTAGTGATAATATTTAGGA
1 TTATTTAGTGATAATATTTAGGA
80309077 TTATTTAGTGATAATATTTAGGA
1 TTATTTAGTGATAATATTTAGGA
80309100 AAAATCTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (23 bp):
TTATTTAGTGATAATATTTAGGA
Found at i:80311138 original size:149 final size:149
Alignment explanation
Indices: 80310908--80311203 Score: 432
Period size: 149 Copynumber: 2.0 Consensus size: 149
80310898 GGGCTTGAAA
* * * *
80310908 ATGTTGGTAATTTTTCGGCACAAAATCATGGGCCTAATGTGCCATAGTACACTAAACTGAGGGCG
1 ATGTTGGTAATTTTTCAGAACAAAATCATAGGCCTAATGTGCCATAGCACACTAAACTGAGGGCG
* * * *
80310973 CATGTTCATGACATTGATGCCTCACTATGCGTAGGGTTGCCTCGTCTCCTTGATTTTCATGCATC
66 CATGTCCATGAAATTGATGCCTCACCATGCGTAGGGTTGCCTCGTCTCCCTGATTTTCATGCATC
*
80311038 CGATTATTTGACTACCTTT
131 CGATTATTTGACCACCTTT
* ** *
80311057 ATGTTGGTAATTTTTCAGAACAAAGTCATAGGCCTAATGTGCTGTGGCACACTAAACTGAGGGCG
1 ATGTTGGTAATTTTTCAGAACAAAATCATAGGCCTAATGTGCCATAGCACACTAAACTGAGGGCG
* * *
80311122 -AGTGTCCATGAAATTGATGCCTCGCCATGTGTAGGGTTGCCTCGTCTCCCTGATTTTTATGCAT
66 CA-TGTCCATGAAATTGATGCCTCACCATGCGTAGGGTTGCCTCGTCTCCCTGATTTTCATGCAT
80311186 CCGATTATTTGACCACCT
130 CCGATTATTTGACCACCT
80311204 CTGGGTCCAA
Statistics
Matches: 130, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
148 1 0.01
149 129 0.99
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (149 bp):
ATGTTGGTAATTTTTCAGAACAAAATCATAGGCCTAATGTGCCATAGCACACTAAACTGAGGGCG
CATGTCCATGAAATTGATGCCTCACCATGCGTAGGGTTGCCTCGTCTCCCTGATTTTCATGCATC
CGATTATTTGACCACCTTT
Found at i:80313516 original size:13 final size:13
Alignment explanation
Indices: 80313498--80313523 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80313488 GCACATTCTG
80313498 GAGACTGGTCTTA
1 GAGACTGGTCTTA
80313511 GAGACTGGTCTTA
1 GAGACTGGTCTTA
80313524 CTCTCTTAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (13 bp):
GAGACTGGTCTTA
Found at i:80315074 original size:18 final size:18
Alignment explanation
Indices: 80315041--80315088 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
80315031 ATTAAATTTG
*
80315041 TAATATTA--ATTCTATT
1 TAATATTATTATTTTATT
80315057 TAATATTATTATTTTATT
1 TAATATTATTATTTTATT
*
80315075 TACTATTATTATTT
1 TAATATTATTATTT
80315089 ATAAATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.29
18 20 0.71
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (18 bp):
TAATATTATTATTTTATT
Found at i:80315131 original size:17 final size:16
Alignment explanation
Indices: 80315108--80315156 Score: 64
Period size: 17 Copynumber: 3.0 Consensus size: 16
80315098 AGTGTACTTT
80315108 GTATGTATATATTATTA
1 GTATGTATATATT-TTA
*
80315125 TTATGTATAT-TTTTA
1 GTATGTATATATTTTA
80315140 GTATGTATATATATTTA
1 GTATGTATATAT-TTTA
80315157 TGAAGTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 12 0.43
16 3 0.11
17 13 0.46
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (16 bp):
GTATGTATATATTTTA
Found at i:80315135 original size:15 final size:15
Alignment explanation
Indices: 80315115--80315154 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
80315105 TTTGTATGTA
*
80315115 TATATTATTATTATG
1 TATATTATTAGTATG
*
80315130 TATATTTTTAGTATG
1 TATATTATTAGTATG
80315145 TATATATATT
1 TATAT-TATT
80315155 TATGAAGTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 18 0.86
16 3 0.14
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (15 bp):
TATATTATTAGTATG
Found at i:80316213 original size:19 final size:19
Alignment explanation
Indices: 80316177--80316215 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
80316167 TATTTATTTT
*
80316177 ATATATATGTAAATATTAC
1 ATATATATGTAAACATTAC
* *
80316196 ATATATATTTTAACATTAC
1 ATATATATGTAAACATTAC
80316215 A
1 A
80316216 AGTTATTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.44
Consensus pattern (19 bp):
ATATATATGTAAACATTAC
Found at i:80324465 original size:34 final size:34
Alignment explanation
Indices: 80324425--80324492 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
80324415 CTACAAGGAC
*
80324425 AATAAAGCAGTACCCTGGAAATACGACGTCAATA
1 AATAAAGCAGTACCCTAGAAATACGACGTCAATA
80324459 AATAAAGCAGTACCCTAGAAATACGACGTCAATA
1 AATAAAGCAGTACCCTAGAAATACGACGTCAATA
80324493 TCGTCACACC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.46, C:0.21, G:0.16, T:0.18
Consensus pattern (34 bp):
AATAAAGCAGTACCCTAGAAATACGACGTCAATA
Found at i:80330761 original size:86 final size:84
Alignment explanation
Indices: 80330566--80330902 Score: 383
Period size: 88 Copynumber: 3.9 Consensus size: 84
80330556 TTATTTCTTC
* * * *
80330566 TTTCAGAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT-TGG-CTCGCATTTCGAGGTATTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC---T-GAGGTATTT
*
80330629 T-AAATTTCTGTTTTTAATTCATGT
62 TCAAA-TTCTGTTTTTAATTTAT-T
*
80330653 TTTCAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
80330718 ATTCTGTTTTTAATCTGTATT
66 ATTCTGTTTTTAAT-T-TATT
* * * *
80330739 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCACATGCCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-GACACGCTGAGGTATTTTC
*
80330804 AAATTCTGTTTTCAATTTCTATT
64 AAATTCTGTTTTTAA-TT-TATT
* ** * *
80330827 TTTCCAAAATCAGTTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
* *
80330892 TTTCTGGTTTT
66 ATTCTGTTTTT
80330903 CAAAAAAATC
Statistics
Matches: 217, Mismatches: 25, Indels: 17
0.84 0.10 0.07
Matches are distributed among these distances:
85 23 0.11
86 70 0.32
87 44 0.20
88 75 0.35
89 5 0.02
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.37
Consensus pattern (84 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
ATTCTGTTTTTAATTTATT
Found at i:80332155 original size:21 final size:21
Alignment explanation
Indices: 80332130--80332188 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
80332120 AAATATATTA
80332130 AAAAATACCAAAAAATAAAAAG
1 AAAAA-ACCAAAAAATAAAAAG
* *
80332152 AAAAAAGC-AAAAATAAAAAAT
1 AAAAAACCAAAAAAT-AAAAAG
*
80332173 AAAAAACAAAAAAATA
1 AAAAAACCAAAAAATA
80332189 GGATTTTTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
20 6 0.19
21 14 0.45
22 11 0.35
ACGTcount: A:0.81, C:0.07, G:0.03, T:0.08
Consensus pattern (21 bp):
AAAAAACCAAAAAATAAAAAG
Found at i:80332165 original size:20 final size:20
Alignment explanation
Indices: 80332140--80332184 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
80332130 AAAAATACCA
*
80332140 AAAAATAAAAAGA-AAAAAGC
1 AAAAATAAAAA-ATAAAAAAC
80332160 AAAAATAAAAAATAAAAAAC
1 AAAAATAAAAAATAAAAAAC
80332180 AAAAA
1 AAAAA
80332185 AATAGGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.84, C:0.04, G:0.04, T:0.07
Consensus pattern (20 bp):
AAAAATAAAAAATAAAAAAC
Found at i:80332780 original size:18 final size:18
Alignment explanation
Indices: 80332747--80332793 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
80332737 ATTAAATTTG
*
80332747 TAATATTA-T-TTCTATT
1 TAATATTATTATTATATT
80332763 TAATATTATTATTATATT
1 TAATATTATTATTATATT
*
80332781 TACTATTATTATT
1 TAATATTATTATT
80332794 TATAAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 8 0.30
17 1 0.04
18 18 0.67
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (18 bp):
TAATATTATTATTATATT
Found at i:80332837 original size:17 final size:16
Alignment explanation
Indices: 80332814--80332862 Score: 64
Period size: 17 Copynumber: 3.0 Consensus size: 16
80332804 AGTGCACTTT
80332814 GTATGTATATATTATTA
1 GTATGTATATATT-TTA
*
80332831 TTATGTATAT-TTTTA
1 GTATGTATATATTTTA
80332846 GTATGTATATATATTTA
1 GTATGTATATAT-TTTA
80332863 TGAAGTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 12 0.43
16 3 0.11
17 13 0.46
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (16 bp):
GTATGTATATATTTTA
Found at i:80332841 original size:15 final size:15
Alignment explanation
Indices: 80332821--80332860 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
80332811 TTTGTATGTA
*
80332821 TATATTATTATTATG
1 TATATTATTAGTATG
*
80332836 TATATTTTTAGTATG
1 TATATTATTAGTATG
80332851 TATATATATT
1 TATAT-TATT
80332861 TATGAAGTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 18 0.86
16 3 0.14
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (15 bp):
TATATTATTAGTATG
Found at i:80348950 original size:86 final size:86
Alignment explanation
Indices: 80348743--80349330 Score: 569
Period size: 86 Copynumber: 6.9 Consensus size: 86
80348733 TTATTTCTGC
* * * *
80348743 TTTCAGAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGG-CTCGCATGCCGATGTATTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC-T---GAGGTATTT
* * * *
80348806 TCAATTTCTATTTTTAATTCAT-GT
62 TCAAATTCTGTTTTTAATTTATATT
*
80348830 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
*
80348895 ATTCTGTTTTTAATCTATATT
66 ATTCTGTTTTTAATTTATATT
* * * *
80348916 TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCACATGCCGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-GACACGCTGAGGTATTTTC
* *
80348981 AAATTCTGTTTTCAATTTCTATT
64 AAATTCTGTTTTTAATTTATATT
* ** * *
80349004 TTTCCAAAATCAGTTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATAATTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
* * *
80349069 TTTCTG--GTT--TTCA-A--
66 ATTCTGTTTTTAATTTATATT
*
80349083 ----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCCAGGACACGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
* * * * **
80349144 AATCTATTTTTTTATTTTTGCT
66 ATTCT-GTTTTTAATTTATATT
* *
80349166 TTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCAG
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
* * * *
80349230 TTTCTGTTTTCAAATTTCTGTT
66 ATTCTGTTTT-TAATTTATATT
* * * * * *
80349252 TGTCAAGAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGCTCATGCGCTGAGCTATTTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACA--CGCTGAGGTATTTT
*
80349316 CAATTTCTGTTTTTA
63 CAAATTCTGTTTTTA
80349331 GTATATGTTA
Statistics
Matches: 415, Mismatches: 64, Indels: 43
0.80 0.12 0.08
Matches are distributed among these distances:
75 58 0.14
78 2 0.00
80 2 0.00
81 1 0.00
82 2 0.00
84 1 0.00
85 29 0.07
86 135 0.33
87 80 0.19
88 77 0.19
89 28 0.07
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (86 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA
ATTCTGTTTTTAATTTATATT
Found at i:80349185 original size:161 final size:162
Alignment explanation
Indices: 80348920--80349243 Score: 447
Period size: 161 Copynumber: 2.0 Consensus size: 162
80348910 TATATTTTTC
* * *
80348920 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCACATGCCGAGGTATTTTCAAAT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCCAGTCACACGCCGAGGTATTTTCAAAA
* **
80348985 TCTGTTTTCAATTTCTATTTTTCCAAAATCAGTTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
66 TCTGTTTTCAATTTCTACTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
80349050 CACGCTGAGATAATTTCAATTTCTGGTTTTCAA
131 CACGCTGAGATAATTTCAATTTCT-GTTTTCAA
* * *
80349083 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-CCAG-GACACGCTGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCCAGTCACACGCCGAGGTATTTTCAAAA
* ** * *
80349146 TCTATTTTTTTATTTTTGCTTTT-CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
66 TCT-GTTTTCAATTTCTACTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * * *
80349210 ACATGCTGAGGTATTTTCAGTTTCTGTTTTCAA
130 ACACGCTGAGATAATTTCAATTTCTGTTTTCAA
80349243 A
1 A
80349244 TTTCTGTTTG
Statistics
Matches: 142, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
160 9 0.06
161 82 0.58
162 16 0.11
163 35 0.25
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (162 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCCAGTCACACGCCGAGGTATTTTCAAAA
TCTGTTTTCAATTTCTACTTTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
CACGCTGAGATAATTTCAATTTCTGTTTTCAA
Found at i:80351097 original size:29 final size:29
Alignment explanation
Indices: 80351055--80351112 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
80351045 GTTTTTAGTC
* *
80351055 CTCCTACTATTTGCGCGTGTTGGAATAGG
1 CTCCTACTATTTGCACGTGTTAGAATAGG
80351084 CTCCTACTATTTGCACGTGTTAGAATAGG
1 CTCCTACTATTTGCACGTGTTAGAATAGG
80351113 TCGTTCTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (29 bp):
CTCCTACTATTTGCACGTGTTAGAATAGG
Found at i:80351240 original size:18 final size:18
Alignment explanation
Indices: 80351207--80351253 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
80351197 ATTAAATTTG
*
80351207 TAATATTA--ATTCTATT
1 TAATATTATTATTATATT
80351223 TAATATTATTATTATATT
1 TAATATTATTATTATATT
*
80351241 TACTATTATTATT
1 TAATATTATTATT
80351254 TATAAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 8 0.30
18 19 0.70
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (18 bp):
TAATATTATTATTATATT
Found at i:80351297 original size:17 final size:16
Alignment explanation
Indices: 80351274--80351322 Score: 64
Period size: 17 Copynumber: 3.0 Consensus size: 16
80351264 AGTGTACTTT
80351274 GTATGTATATATTATTA
1 GTATGTATATATT-TTA
*
80351291 TTATGTATAT-TTTTA
1 GTATGTATATATTTTA
80351306 GTATGTATATATATTTA
1 GTATGTATATAT-TTTA
80351323 TGAAGTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 12 0.43
16 3 0.11
17 13 0.46
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (16 bp):
GTATGTATATATTTTA
Found at i:80351301 original size:15 final size:15
Alignment explanation
Indices: 80351281--80351320 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
80351271 TTTGTATGTA
*
80351281 TATATTATTATTATG
1 TATATTATTAGTATG
*
80351296 TATATTTTTAGTATG
1 TATATTATTAGTATG
80351311 TATATATATT
1 TATAT-TATT
80351321 TATGAAGTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 18 0.86
16 3 0.14
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (15 bp):
TATATTATTAGTATG
Found at i:80354322 original size:13 final size:13
Alignment explanation
Indices: 80354304--80354346 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
80354294 TAGATTTTTC
80354304 CTAAATATTATCA
1 CTAAATATTATCA
80354317 CTAAATA--ATC-
1 CTAAATATTATCA
80354327 CTAAATATTATCA
1 CTAAATATTATCA
80354340 CTAAATA
1 CTAAATA
80354347 AATCAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.26
11 3 0.11
12 3 0.11
13 14 0.52
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:80354329 original size:23 final size:23
Alignment explanation
Indices: 80354302--80354347 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
80354292 GCTAGATTTT
80354302 TCCTAAATATTATCACTAAATAA
1 TCCTAAATATTATCACTAAATAA
80354325 TCCTAAATATTATCACTAAATAA
1 TCCTAAATATTATCACTAAATAA
80354348 ATCAAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (23 bp):
TCCTAAATATTATCACTAAATAA
Found at i:80354355 original size:23 final size:23
Alignment explanation
Indices: 80354306--80354355 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
80354296 GATTTTTCCT
*
80354306 AAATATTATCACTAAATAATCCT
1 AAATATTATCACTAAATAATCCA
80354329 AAATATTATCACTAAATAAAT-CA
1 AAATATTATCACTAAAT-AATCCA
80354352 AAAT
1 AAAT
80354356 TTAAAAATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 22 0.88
24 3 0.12
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (23 bp):
AAATATTATCACTAAATAATCCA
Found at i:80356557 original size:31 final size:32
Alignment explanation
Indices: 80356522--80356598 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 32
80356512 ATGATGCTAG
* *
80356522 AGATATTTTAATATTTTA-TAAT-TATTTAATT
1 AGATATTTTATTATTTTATTAATAT-TTTAATA
**
80356553 AGATA-AATATTATTTTATTAATATTTTAATA
1 AGATATTTTATTATTTTATTAATATTTTAATA
80356584 AGATATTTTATTATT
1 AGATATTTTATTATT
80356599 ATTTTATTAG
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
30 9 0.24
31 20 0.54
32 8 0.22
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (32 bp):
AGATATTTTATTATTTTATTAATATTTTAATA
Found at i:80356577 original size:11 final size:11
Alignment explanation
Indices: 80356563--80356607 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
80356553 AGATAAATAT
80356563 TATTTTATTAA
1 TATTTTATTAA
*
80356574 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
80356587 TATTTTATTAT
1 TATTTTATTAA
80356598 TATTTTATTA
1 TATTTTATTA
80356608 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:80358558 original size:62 final size:62
Alignment explanation
Indices: 80358451--80358603 Score: 270
Period size: 62 Copynumber: 2.5 Consensus size: 62
80358441 AATTGATGGT
* *
80358451 AAAAAGGATCTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCCAAAGAATATGTGG
1 AAAATGGATTTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCCAAAGAATATGTGG
*
80358513 AAAATGGATTTAGCCCAGACGGGTGATCCTATCCTGATATAGCCCTCCCAAAGAATATGTGG
1 AAAATGGATTTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCCAAAGAATATGTGG
*
80358575 AAAATGGATTTAGCCCGGACGGGTAATCC
1 AAAATGGATTTAGCCCGGACGGGTGATCC
80358604 GAATTAGGGT
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 86 1.00
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.22
Consensus pattern (62 bp):
AAAATGGATTTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCCAAAGAATATGTGG
Found at i:80358854 original size:46 final size:46
Alignment explanation
Indices: 80358787--80359152 Score: 502
Period size: 46 Copynumber: 8.0 Consensus size: 46
80358777 AGTGTGCTCT
*
80358787 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
*
80358833 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACTATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
80358879 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
*
80358925 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
80358971 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* *** * *
80359017 ATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
80359063 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
80359109 ATGACA-GAAAATG-AGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTA-TAAGACCATGGTTGAAAGATACCATGGCA
80359153 TCATGTCAAA
Statistics
Matches: 296, Mismatches: 22, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
45 2 0.01
46 294 0.99
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:80359459 original size:16 final size:17
Alignment explanation
Indices: 80359438--80359470 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
80359428 ATGATGGAGC
80359438 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
80359454 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
80359471 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:80360866 original size:10 final size:10
Alignment explanation
Indices: 80360851--80360875 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
80360841 CTATCAATGA
80360851 AAAAAAATCT
1 AAAAAAATCT
80360861 AAAAAAATCT
1 AAAAAAATCT
80360871 AAAAA
1 AAAAA
80360876 CCAACCACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAAAATCT
Found at i:80362035 original size:23 final size:23
Alignment explanation
Indices: 80362009--80362058 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
80361999 TGATTTTTAA
80362009 ATTTTA-ATTTATTTAGTGATAAT
1 ATTTTAGA-TTATTTAGTGATAAT
80362032 A-TTTAGGATTATTTAGTGATAAT
1 ATTTTA-GATTATTTAGTGATAAT
80362055 ATTT
1 ATTT
80362059 AGGAAAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 4 0.17
23 17 0.71
24 3 0.12
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (23 bp):
ATTTTAGATTATTTAGTGATAAT
Found at i:80362036 original size:13 final size:13
Alignment explanation
Indices: 80362018--80362060 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
80362008 AATTTTAATT
80362018 TATTTAGTGATAA
1 TATTTAGTGATAA
80362031 TATTTAG-GAT--
1 TATTTAGTGATAA
80362041 TATTTAGTGATAA
1 TATTTAGTGATAA
80362054 TATTTAG
1 TATTTAG
80362061 GAAAAATCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.26
11 3 0.11
12 3 0.11
13 14 0.52
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:80362059 original size:23 final size:23
Alignment explanation
Indices: 80362017--80362062 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
80362007 AAATTTTAAT
80362017 TTATTTAGTGATAATATTTAGGA
1 TTATTTAGTGATAATATTTAGGA
80362040 TTATTTAGTGATAATATTTAGGA
1 TTATTTAGTGATAATATTTAGGA
80362063 AAAATCTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (23 bp):
TTATTTAGTGATAATATTTAGGA
Found at i:80367233 original size:21 final size:20
Alignment explanation
Indices: 80367209--80367248 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
80367199 TATGAGCTTT
*
80367209 AATGATTGATGATAGATTATG
1 AATGATTAATGATAG-TTATG
*
80367230 AATGTTTAATGATAGTTAT
1 AATGATTAATGATAGTTAT
80367249 ATAAGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (20 bp):
AATGATTAATGATAGTTATG
Found at i:80368781 original size:19 final size:20
Alignment explanation
Indices: 80368757--80368794 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
80368747 TAATTAGATT
80368757 TTAATTAA-GTAAATTTAGC
1 TTAATTAAGGTAAATTTAGC
*
80368776 TTAATTAAGGTTAATTTAG
1 TTAATTAAGGTAAATTTAG
80368795 TGTAATGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (20 bp):
TTAATTAAGGTAAATTTAGC
Found at i:80369098 original size:20 final size:18
Alignment explanation
Indices: 80369073--80369113 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
80369063 ACGAATGAGC
80369073 AGGGAAAGAAAGAAAGAAAA
1 AGGGAAAG-AA-AAAGAAAA
80369093 AGGGAAAGAAAAAGAAAA
1 AGGGAAAGAAAAAGAAAA
80369111 AGG
1 AGG
80369114 AAAATTAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 11 0.52
19 2 0.10
20 8 0.38
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (18 bp):
AGGGAAAGAAAAAGAAAA
Found at i:80369951 original size:6 final size:6
Alignment explanation
Indices: 80369940--80369965 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
80369930 TTCGTACCTG
80369940 ACTGTT ACTGTT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT AC
80369966 CCTTACGGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
ACTGTT
Found at i:80376013 original size:26 final size:26
Alignment explanation
Indices: 80375976--80376059 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
80375966 CATAAAATTT
80375976 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
80376002 TTATCATTAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
80376028 TTATCATGGAGCATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
80376054 TTATCA
1 TTATCA
80376060 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:80376838 original size:38 final size:40
Alignment explanation
Indices: 80376743--80376869 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 40
80376733 CTGTGTCACG
* * *
80376743 GGCGTGTCTTTGGCCTTGTGAGACACACGGTCAGGCCACA
1 GGCGTGTCTTTAGCCGTGTGAGACACATGGTCAGGCCACA
80376783 GGCGTGTCTTTCA-CCGTGTGAGACACATGGT-AGGCCACA
1 GGCGTGTCTTT-AGCCGTGTGAGACACATGGTCAGGCCACA
* * *
80376822 -GCGTGTCTTTAGCCGTGTGAGACATATGGCCGAGCCACACA
1 GGCGTGTCTTTAGCCGTGTGAGACACATGGTC-AGGC-CACA
80376863 GGCGTGT
1 GGCGTGT
80376870 GTCCTCTGTT
Statistics
Matches: 75, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
37 1 0.01
38 26 0.35
39 8 0.11
40 30 0.40
41 4 0.05
42 6 0.08
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (40 bp):
GGCGTGTCTTTAGCCGTGTGAGACACATGGTCAGGCCACA
Found at i:80377358 original size:40 final size:38
Alignment explanation
Indices: 80377293--80377368 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 38
80377283 TGATAAGTTT
* *
80377293 TATATATTTTAAATATTTTCAATAATTCAAATAAAAGA
1 TATATATTTTAAATATTTACAATAATTAAAATAAAAGA
* *
80377331 TATATTATTTTAATCTATTTACTATAATTAAAATAAAA
1 TATA-TATTTTAA-ATATTTACAATAATTAAAATAAAA
80377369 TATTTAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 4 0.12
39 8 0.25
40 20 0.62
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.45
Consensus pattern (38 bp):
TATATATTTTAAATATTTACAATAATTAAAATAAAAGA
Found at i:80377641 original size:16 final size:16
Alignment explanation
Indices: 80377612--80377645 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
80377602 AACACAATAT
* *
80377612 ATTATTAATTAATAAA
1 ATTATAAATAAATAAA
80377628 ATTATAAATAAATAAA
1 ATTATAAATAAATAAA
80377644 AT
1 AT
80377646 CATTAAATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTATAAATAAATAAA
Found at i:80378247 original size:15 final size:14
Alignment explanation
Indices: 80378223--80378252 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
80378213 CTTATACTTA
80378223 TTTTATTATTAATG
1 TTTTATTATTAATG
80378237 TTTTCATTATTAATG
1 TTTT-ATTATTAATG
80378252 T
1 T
80378253 AATAGTCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.27, C:0.03, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTATTATTAATG
Found at i:80380189 original size:38 final size:40
Alignment explanation
Indices: 80380122--80380201 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
80380112 AGCCGTGTGT
80380122 CACACACGGCCTATATACACGTCCGTGTGTCTTACCTGTA
1 CACACACGGCCTATATACACGTCCGTGTGTCTTACCTGTA
*
80380162 CACACACGGCCTATATACACGTCTGTGTGTCTTACCTGTA
1 CACACACGGCCTATATACACGTCCGTGTGTCTTACCTGTA
80380202 TGGACAAACT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.29
Consensus pattern (40 bp):
CACACACGGCCTATATACACGTCCGTGTGTCTTACCTGTA
Found at i:80381015 original size:47 final size:47
Alignment explanation
Indices: 80380914--80381503 Score: 364
Period size: 47 Copynumber: 12.7 Consensus size: 47
80380904 TATGCGTGCT
* * * *
80380914 GATGCATGTCCCAGACATGTATTACACTAGC-A-C-AACTCTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTATCTC-GAGGCC
** * * *
80380958 GATGTGTGTCCCAAACACGTCTTACACTGGCTATCTATGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTATCTCGAGGCC
* * *
80381005 GATGCATGTCCCAAACATGTCTTACTCTGGC-A-CTCATCTCTG-TGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCT-ATCTC-GAGGCC
* * * * *
80381051 GATACCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCG-TGCT
1 GAT-GCATGTCCCAGACAT-GTCTTACACTGGCTATC-TATCT-CGAGGCC
* * * *
80381101 GATGCATGTCCCAGACATGTCTTACACTAG-TA-C-AACTCTTA-GTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTATCTC-GAGGCC
* * * *
80381145 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTATCTCGAGGCC
* * *
80381192 GATGTATGTCCCAGACATGTCTTACTCTGGC-A-CTCATCTCTG-TGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCT-ATCTC-GAGGCC
* * * * * * *
80381238 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATGTATGCG-TGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TATCT-CGAGGCC
* * *
80381288 GATGCATGTCCCAGACATGTCTTACACTAGC-A-C-AACTCTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTATCTC-GAGGCC
* * * *
80381332 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTATCTCGAGGCC
* * ***
80381379 GATGCATGTCCCAGACATGTCTTACTCTGGC-A-CTCATCTCTATATC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCT-ATCTCGAGGCC
* * * * *
80381425 GATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTC-ATAAT-GTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCTAT-CTCGAGGCC
*
80381473 GAAGCATGTCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
80381504 GCACAAATCA
Statistics
Matches: 423, Mismatches: 85, Indels: 74
0.73 0.15 0.13
Matches are distributed among these distances:
43 2 0.00
44 86 0.20
45 10 0.02
46 52 0.12
47 153 0.36
48 65 0.15
49 28 0.07
50 23 0.05
51 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCTATCTCGAGGCC
Found at i:80381188 original size:187 final size:187
Alignment explanation
Indices: 80380863--80381500 Score: 1073
Period size: 187 Copynumber: 3.4 Consensus size: 187
80380853 GATAAATTGT
* *
80380863 CGATGCCATGTCCCAAATATGGTCTTACACTAGCTCTCATATATGCGTGCTGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATGCGTGCTGATGCATGTCCCAG
* * *
80380928 ACATGTATTACACTAGCACAACTCTTAGCCGATGTGTGTCCCAAACACGTCTTACACTGGCTATC
66 ACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATC
* *
80380993 TATGTCGAGGCCGATGCATGTCCCAAACATGTCTTACTCTGGCACTCATCTCTGTGC
131 TCTGTCGAGGCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGTGC
* *
80381050 CGATACCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTGCTGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATGCGTGCTGATGCATGTCCCAG
* *
80381115 ACATGTCTTACACTAGTACAACTCTTAGTCGATGCGTGTCCCAGACACGTCTTACACTGGCTATC
66 ACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATC
*
80381180 TCTGTCGAGGCCGATGTATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGTGC
131 TCTGTCGAGGCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGTGC
* *
80381237 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATGTATGCGTGCTGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATGCGTGCTGATGCATGTCCCAG
80381302 ACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATC
66 ACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATC
* **
80381367 TCTGTCGAGGCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTATAT
131 TCTGTCGAGGCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGTGC
* * * *
80381424 CGATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTCATA-ATGTG-GCTGAAGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATGCGTGCTGATGCATGTCCCAG
80381487 ACATGTCTTACACT
66 ACATGTCTTACACT
80381501 GGCGCACAAA
Statistics
Matches: 423, Mismatches: 28, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
185 30 0.07
186 4 0.01
187 389 0.92
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (187 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATGCGTGCTGATGCATGTCCCAG
ACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATC
TCTGTCGAGGCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGTGC
Found at i:80389083 original size:149 final size:149
Alignment explanation
Indices: 80388805--80389102 Score: 398
Period size: 149 Copynumber: 2.0 Consensus size: 149
80388795 CATTGGACCG
* * *
80388805 AGAGGTGGTCAAATAATCGGATGCATAAAAATCAGGGAGACGAGGCAACCCTACACATGGCGAGG
1 AGAGGTGGTCAAATAATCAGATACATAAAAATCAAGGAGACGAGGCAACCCTACACATGGCGAGG
* * * * * * ** * *
80388870 CATTAATTTCATGGACACGCGCCTTCAGTTTAGTGTGCCATAGCACATTAGGCCTATGACTTTGT
66 CATCAATGTCATGAACACGCACCCTCAATTTAGTGCACCACAGCACATTAGGCCCATGACTTTGT
* *
80388935 TCTGAAAAATTACCAACAT
131 GCCGAAAAATTACCAACAT
* * * *
80388954 AGAGGTGGTCAAATAATCAGATACATGAAAATTAAGGAGACGAGGCAACTCTACGCATGGCGAGG
1 AGAGGTGGTCAAATAATCAGATACATAAAAATCAAGGAGACGAGGCAACCCTACACATGGCGAGG
* * *
80389019 CATCAATGTCATGAACATGCACCCTCAATTTAGTGCACCACGGCACATTAGGCCCATGATTTTGT
66 CATCAATGTCATGAACACGCACCCTCAATTTAGTGCACCACAGCACATTAGGCCCATGACTTTGT
80389084 GCCGAAAAATTACCAACAT
131 GCCGAAAAATTACCAACAT
80389103 TTTCAAGCCC
Statistics
Matches: 127, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
149 127 1.00
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (149 bp):
AGAGGTGGTCAAATAATCAGATACATAAAAATCAAGGAGACGAGGCAACCCTACACATGGCGAGG
CATCAATGTCATGAACACGCACCCTCAATTTAGTGCACCACAGCACATTAGGCCCATGACTTTGT
GCCGAAAAATTACCAACAT
Found at i:80390947 original size:13 final size:13
Alignment explanation
Indices: 80390929--80390971 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
80390919 TAGATTTTTC
80390929 CTAAATATTATCA
1 CTAAATATTATCA
80390942 CTAAATA--ATC-
1 CTAAATATTATCA
80390952 CTAAATATTATCA
1 CTAAATATTATCA
80390965 CTAAATA
1 CTAAATA
80390972 AATTAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.26
11 3 0.11
12 3 0.11
13 14 0.52
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:80390955 original size:23 final size:23
Alignment explanation
Indices: 80390927--80390972 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
80390917 TTTAGATTTT
80390927 TCCTAAATATTATCACTAAATAA
1 TCCTAAATATTATCACTAAATAA
80390950 TCCTAAATATTATCACTAAATAA
1 TCCTAAATATTATCACTAAATAA
80390973 ATTAAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (23 bp):
TCCTAAATATTATCACTAAATAA
Found at i:80394775 original size:13 final size:13
Alignment explanation
Indices: 80394753--80394800 Score: 50
Period size: 13 Copynumber: 4.0 Consensus size: 13
80394743 TTTTAAATTT
80394753 TGAT-TTATTTAG
1 TGATATTATTTAG
80394765 TGATATTATTTAG
1 TGATATTATTTAG
*
80394778 -G--ATTACTTAG
1 TGATATTATTTAG
*
80394788 TGATAATATTTAG
1 TGATATTATTTAG
80394801 GAAAAATCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
10 8 0.28
11 1 0.03
12 5 0.17
13 15 0.52
ACGTcount: A:0.31, C:0.02, G:0.17, T:0.50
Consensus pattern (13 bp):
TGATATTATTTAG
Found at i:80403791 original size:31 final size:30
Alignment explanation
Indices: 80403745--80403806 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 30
80403735 TTCATCCAGG
80403745 TAAGCCTTTTTTTCTTCCATTCTTCAACTT
1 TAAGCCTTTTTTTCTTCCATTCTTCAACTT
*
80403775 TAAGCTTTCTTTTTCTTCCATTCTTCAACTT
1 TAAGCCTT-TTTTTCTTCCATTCTTCAACTT
80403806 T
1 T
80403807 TTCCATCTCC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.16, C:0.26, G:0.03, T:0.55
Consensus pattern (30 bp):
TAAGCCTTTTTTTCTTCCATTCTTCAACTT
Found at i:80406379 original size:92 final size:93
Alignment explanation
Indices: 80406232--80406416 Score: 309
Period size: 92 Copynumber: 2.0 Consensus size: 93
80406222 AGCAATCCTT
* * * *
80406232 TTCTTAGCCTTTATTTACTTTTGTTAGGATTGAGCTCTGATTATATATTTTGTTTTGGGTTTAAT
1 TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
80406297 TGTTGATTCATCTTTTTTCTATTATTTC
66 TGTTGATTCATCTTTTTTCTATTATTTC
*
80406325 TTCTTCGCCTTTATTTAC-TTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
1 TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
*
80406389 TGTTTATTCATCTTTTTTCTATTATTTC
66 TGTTGATTCATCTTTTTTCTATTATTTC
80406417 CTGGCAGCTC
Statistics
Matches: 86, Mismatches: 6, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 69 0.80
93 17 0.20
ACGTcount: A:0.18, C:0.11, G:0.14, T:0.57
Consensus pattern (93 bp):
TTCTTAGCCTTTATTTACTTTTATTAGGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAAT
TGTTGATTCATCTTTTTTCTATTATTTC
Found at i:80406889 original size:25 final size:25
Alignment explanation
Indices: 80406853--80406902 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
80406843 AAGGTTAATG
*
80406853 CTATTTGTCAATTCCCATTCAACAT
1 CTATTTGCCAATTCCCATTCAACAT
80406878 CTATTTGCCAATTCCCATTCAACAT
1 CTATTTGCCAATTCCCATTCAACAT
80406903 TCTCTCTTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.04, T:0.38
Consensus pattern (25 bp):
CTATTTGCCAATTCCCATTCAACAT
Found at i:80408727 original size:15 final size:14
Alignment explanation
Indices: 80408709--80408738 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
80408699 AATGACTATT
80408709 ACATTAATAATGAAA
1 ACATTAATAAT-AAA
80408724 ACATTAATAATAAA
1 ACATTAATAATAAA
80408738 A
1 A
80408739 TAAGTATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (14 bp):
ACATTAATAATAAA
Found at i:80409109 original size:26 final size:27
Alignment explanation
Indices: 80409079--80409140 Score: 99
Period size: 26 Copynumber: 2.3 Consensus size: 27
80409069 AGTTTTGAGA
80409079 TATAAATTAAAAATAAATAAATAAA-T
1 TATAAATTAAAAATAAATAAATAAATT
*
80409105 TATAAATTAAGAATAAATAAATAAATT
1 TATAAATTAAAAATAAATAAATAAATT
*
80409132 TATACATTA
1 TATAAATTA
80409141 TAGATTAGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
26 24 0.73
27 9 0.27
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (27 bp):
TATAAATTAAAAATAAATAAATAAATT
Found at i:80412553 original size:39 final size:38
Alignment explanation
Indices: 80412506--80412615 Score: 103
Period size: 39 Copynumber: 2.8 Consensus size: 38
80412496 ATAAAGATGC
* *
80412506 TTTAGAGTATTGTGGTATATGCTTGAATGTTATGTGAT
1 TTTAGAGTATTGTGATATATGCTTGAATGTTATGAGAT
* * * * * *
80412544 TTTACGAGTATTATGACATATACTTAAACGTCATGAGAT
1 TTTA-GAGTATTGTGATATATGCTTGAATGTTATGAGAT
* * *
80412583 TATATGAGTATGGTGATATATGCTTGTATGTTA
1 TTTA-GAGTATTGTGATATATGCTTGAATGTTA
80412616 AATGACCTAA
Statistics
Matches: 53, Mismatches: 18, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
38 4 0.08
39 49 0.92
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43
Consensus pattern (38 bp):
TTTAGAGTATTGTGATATATGCTTGAATGTTATGAGAT
Found at i:80420224 original size:54 final size:54
Alignment explanation
Indices: 80419823--80420255 Score: 195
Period size: 54 Copynumber: 8.1 Consensus size: 54
80419813 TTGAATTAAA
* ** * *
80419823 ATCACGACCTTCTACTTAC-AGGATTTTATGAATCTCGTGGTCCTCTGATTTAAG
1 ATCACGACCTTTTACTTACGA-GATTTTATGAATCTCAAGGTCCGCTGATTTACG
* * * *** * * *
80419877 ATCATGACATTTTACATAC-AGGATTTTGCAAATCTCATAGGCTACG--AATTTACA
1 ATCACGACCTTTTACTTACGA-GATTTTATGAATCTCA-AGG-TCCGCTGATTTACG
** * * ** **
80419931 ATCA-GAACCTTCAACTTACGGGATTTTACGAATCT-TGGAGTTTGCTGATTTACG
1 ATCACG-ACCTTTTACTTACGAGATTTTATGAATCTCAAG-GTCCGCTGATTTACG
* * * * * ** * *
80419985 ATCACAACCTTTTACTTTCGAGAATTTATGAATCTCGAGATTTGTTGATTTACA
1 ATCACGACCTTTTACTTACGAGATTTTATGAATCTCAAGGTCCGCTGATTTACG
* * * * * * *
80420039 ATCACGACATTTTACTGACGAGACTTTATGAATCTCGTA-GTTCTCTGATTTATG
1 ATCACGACCTTTTACTTACGAGATTTTATGAATCTC-AAGGTCCGCTGATTTACG
* * * * * ** * *
80420093 ATTACGACC---TACTTA-TAGGATTTTACGACTCTCATGGTCTACTTATTTATG
1 ATCACGACCTTTTACTTACGA-GATTTTATGAATCTCAAGGTCCGCTGATTTACG
* * * * *
80420144 ATGACAACCTTTTACTTATGGGATTTTACGAATCTCAAGGTCCGCTGATTTACG
1 ATCACGACCTTTTACTTACGAGATTTTATGAATCTCAAGGTCCGCTGATTTACG
* * * * * *
80420198 ATAACGACCTTTTACTTACGAAATTTTATGAATCTCACGATCCGCTAATTTACA
1 ATCACGACCTTTTACTTACGAGATTTTATGAATCTCAAGGTCCGCTGATTTACG
80420252 ATCA
1 ATCA
80420256 AGACTTTCTG
Statistics
Matches: 278, Mismatches: 85, Indels: 32
0.70 0.22 0.08
Matches are distributed among these distances:
50 1 0.00
51 35 0.13
52 3 0.01
53 2 0.01
54 231 0.83
55 4 0.01
56 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (54 bp):
ATCACGACCTTTTACTTACGAGATTTTATGAATCTCAAGGTCCGCTGATTTACG
Found at i:80420331 original size:19 final size:19
Alignment explanation
Indices: 80420285--80420332 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
80420275 GTATATATTT
*
80420285 TAAA-TTTATTTAAGTAGA
1 TAAATTTTATTTAAGAAGA
* *
80420303 TAAATCTTATTTAGGAAGA
1 TAAATTTTATTTAAGAAGA
80420322 TAAATTTTATT
1 TAAATTTTATT
80420333 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.42, C:0.02, G:0.10, T:0.46
Consensus pattern (19 bp):
TAAATTTTATTTAAGAAGA
Found at i:80420414 original size:42 final size:42
Alignment explanation
Indices: 80420356--80420439 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
80420346 TATTTTTATT
*
80420356 TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
1 TTATCTTTTAGTAGTTTATTAGAATAAAGGAACTATTTTCCC
* *
80420398 TTATGTTTTAGTAGTTTATTAGAATAAATGAACTATTTTCCC
1 TTATCTTTTAGTAGTTTATTAGAATAAAGGAACTATTTTCCC
80420440 AATTAGGATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (42 bp):
TTATCTTTTAGTAGTTTATTAGAATAAAGGAACTATTTTCCC
Done.