Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 246 of 325
Found at i:80425007 original size:47 final size:47
Alignment explanation
Indices: 80424916--80425332 Score: 672
Period size: 47 Copynumber: 8.7 Consensus size: 47
80424906 TTAGGATTCT
* *
80424916 ATGTGATGGATGTGAACATGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-A-GTGTATATATGTGATAAGGCCTAATGGCCG
80424965 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
80425012 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
80425061 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
80425108 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
80425157 ATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
80425204 ATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
80425251 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
80425298 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
80425333 TCCCGAAGGG
Statistics
Matches: 350, Mismatches: 14, Indels: 10
0.94 0.04 0.03
Matches are distributed among these distances:
47 240 0.69
48 1 0.00
49 109 0.31
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:80425025 original size:96 final size:96
Alignment explanation
Indices: 80424916--80425332 Score: 700
Period size: 96 Copynumber: 4.4 Consensus size: 96
80424906 TTAGGATTCT
*
80424916 ATGTGATGGATGTGAACA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 ATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
80424980 AAGTGTATATATGTGATAAGGCCTAATGGCCG
65 AAGTGTATATATGTGATAAGGCCTAATGGCCG
80425012 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
80425077 AGTGTATATATGTGATAAGGCCTAATGGCCG
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
80425108 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
80425173 AGTGCATATATGTGATAAGGCCTAATGGCCG
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
*
80425204 ATGTGATGAATGTGAAAGTG--CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * *
80425267 AGTGTATATATGTGACAGGGCCGAGTGGCCA
66 AGTGTATATATGTGATAAGGCCTAATGGCCG
* *
80425298 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
80425333 TCCCGAAGGG
Statistics
Matches: 306, Mismatches: 12, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
94 95 0.31
95 2 0.01
96 209 0.68
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:80425111 original size:143 final size:143
Alignment explanation
Indices: 80424916--80425332 Score: 671
Period size: 143 Copynumber: 2.9 Consensus size: 143
80424906 TTAGGATTCT
* *
80424916 ATGTGATGGATGTGAACATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAA-A-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
80424981 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
64 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
80425046 AAGGCCTAATGGCCG
129 AAGGCCTAATGGCCG
80425061 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
80425126 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--CATATATGTGAT
66 TG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
80425189 AAGGCCTAATGGCCG
129 AAGGCCTAATGGCCG
*
80425204 ATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * * * *
80425269 TGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAA
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
80425332 G
131 G
80425333 TCCCGAAGGG
Statistics
Matches: 256, Mismatches: 12, Indels: 12
0.91 0.04 0.04
Matches are distributed among these distances:
141 50 0.20
142 1 0.00
143 142 0.55
144 1 0.00
145 62 0.24
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
GGCCTAATGGCCG
Found at i:80425507 original size:37 final size:37
Alignment explanation
Indices: 80425451--80425529 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
80425441 CCGAGCTCTA
* *
80425451 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
80425488 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
80425525 AAGAC
1 AAGAC
80425530 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:80429598 original size:206 final size:206
Alignment explanation
Indices: 80429244--80429839 Score: 1086
Period size: 206 Copynumber: 2.9 Consensus size: 206
80429234 TCTCGAATGG
*
80429244 AGATCTGCTATGTATCTGCTCTCCGTCAAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAA
1 AGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAA
80429309 TACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATG
66 TACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATG
80429374 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTAGATCTTGCTTCAGTATAAAC
131 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTAGATCTTGCTTCAGTATAAAC
80429439 ATCTGAAGGCC
196 ATCTGAAGGCC
* *
80429450 AGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATTCCAGACTTCGACTTCTTCTCTGACAA
1 AGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAA
* *
80429515 TACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCATAAGCACGCGAAAGCCAAATTAGCTATG
66 TACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATG
*
80429580 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCTTCTTAGATCTTGCTTCAGTATAAAC
131 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTAGATCTTGCTTCAGTATAAAC
80429645 ATCTGAAGGCC
196 ATCTGAAGGCC
*
80429656 AGATCTGCTATGTATCTGCTCTCCATCGAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAA
1 AGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAA
*
80429721 TACAGAGATGCGAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATG
66 TACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATG
* * *
80429786 TCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATC-TGCTT
131 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTAGATCTTGCTT
80429840 TAGCCATATC
Statistics
Matches: 374, Mismatches: 16, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
205 5 0.01
206 369 0.99
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (206 bp):
AGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTGTTCTCTGACAA
TACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCAAATCAGCTATG
TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTAGATCTTGCTTCAGTATAAAC
ATCTGAAGGCC
Found at i:80431290 original size:40 final size:40
Alignment explanation
Indices: 80431213--80431418 Score: 254
Period size: 40 Copynumber: 5.2 Consensus size: 40
80431203 AAACCAAGTA
* * *
80431213 CCTTCGGGATTTAG-CCGGATATAGCT-ACTAGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
80431252 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
80431292 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* ** * * *
80431332 CCTTCGGGACTTAGCCCGGATATAATCGCTAGCATAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * **
80431372 CCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAAAA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
80431412 CCTTCGG
1 CCTTCGG
80431419 ATCTTAGTCC
Statistics
Matches: 144, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 14 0.10
40 130 0.90
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:80437345 original size:46 final size:46
Alignment explanation
Indices: 80437283--80437548 Score: 334
Period size: 46 Copynumber: 6.0 Consensus size: 46
80437273 TTTGACGTGA
* * * * * *
80437283 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
80437329 TGTCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
80437375 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
80437421 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
80437467 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
80437505 TGCCATGGTATCTTTCAACCATGGTTTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
80437549 AGAGCACACT
Statistics
Matches: 195, Mismatches: 16, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
38 32 0.16
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 5 0.03
46 149 0.76
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:80437513 original size:38 final size:38
Alignment explanation
Indices: 80437462--80437537 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
80437452 CATTTCATAT
80437462 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
*
80437500 CAGGTTGCCATGGTATCTTTCAACCATGGTTTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
80437538 TTTCATATCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:80447117 original size:39 final size:41
Alignment explanation
Indices: 80447063--80447204 Score: 211
Period size: 40 Copynumber: 3.6 Consensus size: 41
80447053 AACCCAAGTA
*
80447063 CCTTCGGGACTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
* * *
80447102 CCTTCGGGTCTTAGCCCAGATATAGTCAA-TAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
*
80447142 CCTTCGGGATTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
80447182 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
80447205 CATTCGAATA
Statistics
Matches: 91, Mismatches: 9, Indels: 5
0.87 0.09 0.05
Matches are distributed among these distances:
39 14 0.15
40 74 0.81
41 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
Found at i:80448741 original size:46 final size:46
Alignment explanation
Indices: 80448691--80448816 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
80448681 TGGTTGAGCA
*
80448691 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
80448737 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
80448783 CCCGAGCTCGTTGGGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80448817 GGGGCGGGTT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:80457054 original size:40 final size:40
Alignment explanation
Indices: 80456980--80457161 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
80456970 AACCCAAGTA
*
80456980 CCTTCGGGACTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * * *
80457019 CCTTCGGGTCTTAGCTCGAATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
80457059 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
80457099 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
80457139 CCTTCGGGACTTAGCCCCGATAT
1 CCTTCGGGACTTAGCCCGGATAT
80457162 CATTCGAATA
Statistics
Matches: 129, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.10
40 113 0.88
41 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:80461578 original size:33 final size:38
Alignment explanation
Indices: 80461534--80461615 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 38
80461524 ATAATAACAC
*
80461534 AATAGTTATAATAATGA-AA-A-GGTATTA-TAAT-AT
1 AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
*
80461567 AATAGTAATAATGATGATAATAGTGGTATTAGTAATAAT
1 AATAGTAATAATAATGATAATAG-GGTATTAGTAATAAT
*
80461606 AATAATAATA
1 AATAGTAATA
80461616 GAAAATAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
33 15 0.38
34 2 0.05
35 1 0.03
37 7 0.17
38 4 0.10
39 11 0.28
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.35
Consensus pattern (38 bp):
AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
Found at i:80461624 original size:19 final size:18
Alignment explanation
Indices: 80461600--80461641 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
80461590 TGGTATTAGT
*
80461600 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
80461619 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
80461637 AATAA
1 AATAA
80461642 CACTCTCCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:80462158 original size:16 final size:15
Alignment explanation
Indices: 80462117--80462161 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
80462107 CTTTGGAGGT
** *
80462117 TGTTGGGTTTTGGGC
1 TGTTGGGTTTTTAGA
80462132 TGTTGGGTTTTTAGA
1 TGTTGGGTTTTTAGA
80462147 TGTTGGGCTTTTTAG
1 TGTTGGG-TTTTTAG
80462162 CCCGGGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.07, C:0.04, G:0.38, T:0.51
Consensus pattern (15 bp):
TGTTGGGTTTTTAGA
Found at i:80462273 original size:19 final size:19
Alignment explanation
Indices: 80462227--80462274 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
80462217 GTATATATTT
*
80462227 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGAAGA
*
80462245 TAAATCTTATTTAGGAAGA
1 TAAATTTTATTTAGGAAGA
80462264 TAAATTTTATT
1 TAAATTTTATT
80462275 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (19 bp):
TAAATTTTATTTAGGAAGA
Found at i:80462564 original size:54 final size:54
Alignment explanation
Indices: 80462482--80462734 Score: 211
Period size: 54 Copynumber: 4.7 Consensus size: 54
80462472 GGAAACTTTC
* * * * *
80462482 ACCTTCTACTTATGAGATTTTACCAATCTCACGGTCCACTGATTTATGATCAGG
1 ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCCATTGATTTACGATCAGG
* ** * *
80462536 ACCTTCTACTTACGGGGTTTTACAAATCTCACGGTCTGTTGATTTACGATGATG
1 ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCCATTGATTTACGATCAGG
** * ** * * *
80462590 ATTTTCTACTTACAGGATTTTACGGATCTCACAGTCCATTGATTTACAATCATG
1 ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCCATTGATTTACGATCAGG
* * ** * ** * * * * *
80462644 ACCTCCTACTTATGACATTTTACGAATCTTGCAGTCCGTTAATTTATGTTC-GTG
1 ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCCATTGATTTACGATCAG-G
*
80462698 ACCTTCTACTTACGGGATTTTACAAATCTCGCGGTCC
1 ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCC
80462735 TCTAATTGAC
Statistics
Matches: 154, Mismatches: 44, Indels: 2
0.77 0.22 0.01
Matches are distributed among these distances:
54 154 1.00
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (54 bp):
ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCCATTGATTTACGATCAGG
Found at i:80462754 original size:54 final size:52
Alignment explanation
Indices: 80462482--80462774 Score: 190
Period size: 54 Copynumber: 5.4 Consensus size: 52
80462472 GGAAACTTTC
* * * * * *
80462482 ACCTTCTACTTATGAGATTTTACCAATCTCACGGTCCACTGATTTATGATCAGG
1 ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCC-TTGATTTA-CATCATG
* * *
80462536 ACCTTCTACTTACGGGGTTTTACAAATCTCACGGTCTGTTGATTTACGATGATG
1 ACCTTCTACTTACGGGATTTTACAAATCTCACGGTC-CTTGATTTAC-ATCATG
** * ** *
80462590 ATTTTCTACTTACAGGATTTTACGGATCTCACAGTCCATTGATTTACAATCATG
1 ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCC-TTGATTTAC-ATCATG
* * ** * ** * * ** *
80462644 ACCTCCTACTTATGACATTTTACGAATCTTGCAGTCCGTTAATTTATGTTCGTG
1 ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCC-TTGATTTA-CATCATG
* * *
80462698 ACCTTCTACTTACGGGATTTTACAAATCTCGCGGTCCTCTAATTGACATTCATG
1 ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCCT-TGATTTACA-TCATG
* * * *
80462752 ACCTTTTAGTTATGCGATTTTAC
1 ACCTTCTACTTACGGGATTTTAC
80462775 GATTCTAGGT
Statistics
Matches: 184, Mismatches: 49, Indels: 12
0.75 0.20 0.05
Matches are distributed among these distances:
53 1 0.01
54 183 0.99
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.38
Consensus pattern (52 bp):
ACCTTCTACTTACGGGATTTTACAAATCTCACGGTCCTTGATTTACATCATG
Found at i:80462922 original size:27 final size:27
Alignment explanation
Indices: 80462891--80462945 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
80462881 CTGACCTTGA
80462891 AAGGAGGATAGAGGAATCAATTTTCTT
1 AAGGAGGATAGAGGAATCAATTTTCTT
80462918 AAGGAGGATAGAGGAATCAATTTTCTT
1 AAGGAGGATAGAGGAATCAATTTTCTT
80462945 A
1 A
80462946 CATTGCCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.29
Consensus pattern (27 bp):
AAGGAGGATAGAGGAATCAATTTTCTT
Found at i:80463236 original size:54 final size:54
Alignment explanation
Indices: 80463164--80463316 Score: 150
Period size: 54 Copynumber: 2.9 Consensus size: 54
80463154 CGTGGTCTAT
*** * * *
80463164 TAATTTACGATGGTGACCTTTTACTTACAGGATTTTACGAATCTCACAATTCGC
1 TAATTTACGATCACGACCTTCTACTTACAGGATTTTACGAATCTCACAATCCAC
* **
80463218 TAATTTACGATCACGACCTTCTACTTA-TGAGATTTTAC-AAGTCTCACGGTCCAC
1 TAATTTACGATCACGACCTTCTACTTACAG-GATTTTACGAA-TCTCACAATCCAC
* * * *
80463272 TAATTTACGATCACAATCTTCTACATACAGGATTTTAAGAA-CTCA
1 TAATTTACGATCACGACCTTCTACTTACAGGATTTTACGAATCTCA
80463317 TGGTCCATTG
Statistics
Matches: 81, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
53 7 0.09
54 71 0.88
55 3 0.04
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (54 bp):
TAATTTACGATCACGACCTTCTACTTACAGGATTTTACGAATCTCACAATCCAC
Found at i:80463276 original size:108 final size:108
Alignment explanation
Indices: 80463070--80463282 Score: 248
Period size: 108 Copynumber: 2.0 Consensus size: 108
80463060 TTACAATCAC
* * * ** * * * *
80463070 GACCTTTTGCTTTCAAGATTTTACGAATTTCACGGTTCGCTAGTTTATGATGAAAACTTTCTACT
1 GACCTTTTACTTACAAGATTTTACGAATCTCACAATTCGCTAATTTACGATCAAAACCTTCTACT
** * *
80463135 TACGAGATTTAACGAATCTCGTGGTCTATTAATTTACGATGGT
66 TACGAGATTTAACGAATCTCACGGTCCACTAATTTACGATGGT
* **
80463178 GACCTTTTACTTACAGGATTTTACGAATCTCACAATTCGCTAATTTACGATCACGACCTTCTACT
1 GACCTTTTACTTACAAGATTTTACGAATCTCACAATTCGCTAATTTACGATCAAAACCTTCTACT
* *
80463243 TATGAGATTTTAC-AAGTCTCACGGTCCACTAATTTACGAT
66 TACGAGATTTAACGAA-TCTCACGGTCCACTAATTTACGAT
80463283 CACAATCTTC
Statistics
Matches: 86, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
107 2 0.02
108 84 0.98
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (108 bp):
GACCTTTTACTTACAAGATTTTACGAATCTCACAATTCGCTAATTTACGATCAAAACCTTCTACT
TACGAGATTTAACGAATCTCACGGTCCACTAATTTACGATGGT
Found at i:80465932 original size:54 final size:54
Alignment explanation
Indices: 80465817--80466075 Score: 186
Period size: 54 Copynumber: 4.8 Consensus size: 54
80465807 AAGCTTTAGT
* * * * ** * *
80465817 TGATTTACAATCATGACTTTTTACTTACGGGATTTTACAAATCTCACAGTCTA-C
1 TGATTTACGATCACGACCTTCTACTTATAGGATTTTACGAATCTCACGGTC-AGC
* * * *
80465871 T-AGTTTATGATGACGACCTTTTACTTATAGGATTTTACGAATCTCATGGTCAGC
1 TGA-TTTACGATCACGACCTTCTACTTATAGGATTTTACGAATCTCACGGTCAGC
* * ** * *
80465925 TGATTTATGATCACGACCTTCTA-TTAT--GACTTTTTAAGAATCTCGTGGACTGC
1 TGATTTACGATCACGACCTTCTACTTATAGGA--TTTTACGAATCTCACGGTCAGC
* * * * * * *
80465978 TGATTTACGACCACAAGCTTCTACTTATGGGGTTTTAAGAATCTCACGGTCCGC
1 TGATTTACGATCACGACCTTCTACTTATAGGATTTTACGAATCTCACGGTCAGC
* * * *
80466032 TAATTTACGATCACGACCTTCAACTTACATGATTTTACGAATCT
1 TGATTTACGATCACGACCTTCTACTTATAGGATTTTACGAATCT
80466076 AGACATGTTG
Statistics
Matches: 162, Mismatches: 35, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
51 2 0.01
53 43 0.27
54 115 0.71
55 1 0.01
56 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (54 bp):
TGATTTACGATCACGACCTTCTACTTATAGGATTTTACGAATCTCACGGTCAGC
Found at i:80466456 original size:54 final size:54
Alignment explanation
Indices: 80466378--80466580 Score: 176
Period size: 54 Copynumber: 3.8 Consensus size: 54
80466368 GGATTGCTGG
* * * * * *
80466378 TTTACGATGACGATCATTTACTTACGGGATTTTATGAGTCTCACAGTCTGCTAA
1 TTTACAATCACGACCATCTACTTACGGGATTTTATGAATCTCACAGTCCGCTAA
* * * * * *
80466432 TTT-CAGATCATGATCTTCTACTTACAGGATTTTATGAATCTCGCAGTCCGTTAA
1 TTTACA-ATCACGACCATCTACTTACGGGATTTTATGAATCTCACAGTCCGCTAA
* ***
80466486 TTTACAATCACGACCATCTACTTATGGGATTTTATGAATCTTGTAGTCCAG-TAA
1 TTTACAATCACGACCATCTACTTACGGGATTTTATGAATCTCACAGTCC-GCTAA
* * * ** *
80466540 TTTACGATCACAACCTTCTACTTACATGATTTTACGAATCT
1 TTTACAATCACGACCATCTACTTACGGGATTTTATGAATCT
80466581 AGGTGTGTTG
Statistics
Matches: 122, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
53 1 0.01
54 118 0.97
55 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (54 bp):
TTTACAATCACGACCATCTACTTACGGGATTTTATGAATCTCACAGTCCGCTAA
Found at i:80466647 original size:505 final size:503
Alignment explanation
Indices: 80465676--80466869 Score: 1139
Period size: 505 Copynumber: 2.4 Consensus size: 503
80465666 CCGTTACACA
*
80465676 TTTAAAGAAGAAGGATAAAGAAATCTATTTTGTTTCATTGCCTTTGTGAAGCTGAAGCTAGTTCT
1 TTTAAAGAAGAAGGATAAAGAAATCAATTTTGTTT-ATTGCCTTTGTGAAGCTGAAGCTAGTTCT
** * * * *
80465741 CTTCACTATACATTTGAAATAAGGCTTAAAATGGATTTATCTGCTAAAAAAAAGGAACTTTTTGA
65 AATCACCATACATCTGAAATAAGGCTTAAAATGGATTGATCTACTAAAAAAAAGGAACTTTTTGA
* *
80465806 AAAGCTTTAGTTGATTTACAATCATGACTTTTTACTTACGGGATTTTACAAATCTCACAGTCTAC
130 AAAGCTTTAGTTGATTTACAATCACGACCTTTTACTTACGGGATTTTACAAATCTCACAGTCTAC
* * * ** *
80465871 TAGTTTATGATGACGACCTTTTACTTATAGGATTTTACGAATCTCATGGTCAGCTGATTTATGAT
195 TAGTTTACGATGACGACCATTTACTTACAGGATTTTACGAATCTCACAGTCAGCTAATTTATGAT
* ** * * * * *
80465936 CACGACCTTCTATTATGACTTTTTAAGAATCTCGTGGACTGCTGATTTACGACCACAAGCTTCTA
260 CACGACCTTCTATTAGGAC-TTTTAAGAATCTCGCAGACCGCTAATTTACAACCACAACCATCTA
* * *
80466001 CTTATGGGGTTTTAAGAATCTCACGGTCCGCTAATTTACGATCACGACCTTCAACTTACATGATT
324 CTTATGGGATTTTAAGAATCTCACAGTCCGCTAATTTACGATCACAACCTTCAACTTACATGATT
* *
80466066 TTACGAATCTAGACATGTTGAGGAAGAACTCAAAACTGACCTTTCTACCCTTCAGAGCAAGTTAG
389 TTACGAATCTAGACATGTTGAGGAAGAACTCAAAACTGACCTTTCTACCCTTCAAAGCAAATTAG
* *
80466131 AAGCTAGAGATGATTAATATAAGCGTGTTAAGGAAAAACTCAAAACTAAC
454 AAGCCAGAGATGATGAATATAAGCGTGTTAAGGAAAAACTCAAAACTAAC
* * * * *
80466181 TTTAAAGAAGGAGGATAGAGGAATCAATTTT-TTT-TTGCCTTTGTG-AGGTAGGAGCTAGTTCT
1 TTTAAAGAAGAAGGATAAAGAAATCAATTTTGTTTATTGCCTTTGTGAAGCT-GAAGCTAGTTCT
* * * *
80466243 AATCACCATTCATCTGAAATGAGGCTTCAAATGGATTGATCTACTCAAAAAACAATGAACTTTTT
65 AATCACCATACATCTGAAATAAGGCTTAAAATGGATTGATCTACT-AAAAAA-AAGGAACTTTTT
* * * * * * ***
80466308 TAAAAGTTTTAGTTTATTTACAATCACGACCTTTTACTTTCTGGATTTTATAAATCTCGTGGAT-
128 GAAAAGCTTTAGTTGATTTACAATCACGACCTTTTACTTACGGGATTTTACAAATCTCACAG-TC
* * * * * * *
80466372 TGCTGGTTTACGATGACGATCATTTACTTACGGGATTTTATGAGTCTCACAGTCTGCTAATTTCA
192 TACTAGTTTACGATGACGACCATTTACTTACAGGATTTTACGAATCTCACAGTCAGCTAATTT-A
* * * * * * *
80466437 -GATCATGATCTTCTACTTACAGGA-TTTTATGAATCTCGCAGTCCGTTAATTTACAATCACGAC
256 TGATCACGACCTTCTA-TT--AGGACTTTTAAGAATCTCGCAGACCGCTAATTTACAACCACAAC
* *** *
80466500 CATCTACTTATGGGATTTTATGAATCTTGTAGTCCAG-TAATTTACGATCACAACCTTCTACTTA
318 CATCTACTTATGGGATTTTAAGAATCTCACAGTCC-GCTAATTTACGATCACAACCTTCAACTTA
*** * * * *
80466564 CATGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAAAATTGACCCTTT-TTCCTTTCAAAG
382 CATGATTTTACGAATCTAGACATGTTGAGGAAGAACTCAAAACTGA-CCTTTCTACCCTTCAAAG
* *** * *
80466628 CAAATTAGATGCCAGAGATGATGAATATAAGCGTGTTGCTGAAGAACT---GA-T--C
446 CAAATTAGAAGCCAGAGATGATGAATATAAGCGTGTTAAGGAAAAACTCAAAACTAAC
* * * * *
80466680 TTGAAAGAA-AA--ATAGATG-TATCAATTTTGTTATATTGCCTTAG-GAAGGCTGAAGTTAGTT
1 TTTAAAGAAGAAGGATA-AAGAAATCAATTTTGTT-TATTGCCTTTGTGAA-GCTGAAGCTAGTT
* * * *** * * * ** * * * **
80466740 TTATTTACCATGTGTTTGAAATGAGGCTTGAAACAGATCGATTTCCTAAAAAAAAGGAACTTTCC
63 CTAATCACCATACATCTGAAATAAGGCTTAAAATGGATTGATCTACTAAAAAAAAGGAACTTTTT
* * * * * * **
80466805 AAAAAACTTTAGCTGATTTACAATCACAACCTTTTACTTTCGGGACTTTATGAATCTCACAGTCT
128 GAAAAGCTTTAGTTGATTTACAATCACGACCTTTTACTTACGGGATTTTACAAATCTCACAGTCT
80466870 GTCGATTTTC
Statistics
Matches: 555, Mismatches: 117, Indels: 42
0.78 0.16 0.06
Matches are distributed among these distances:
496 13 0.02
497 63 0.11
498 9 0.02
499 60 0.11
500 2 0.00
501 4 0.01
502 59 0.11
503 6 0.01
504 128 0.23
505 202 0.36
506 6 0.01
507 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Consensus pattern (503 bp):
TTTAAAGAAGAAGGATAAAGAAATCAATTTTGTTTATTGCCTTTGTGAAGCTGAAGCTAGTTCTA
ATCACCATACATCTGAAATAAGGCTTAAAATGGATTGATCTACTAAAAAAAAGGAACTTTTTGAA
AAGCTTTAGTTGATTTACAATCACGACCTTTTACTTACGGGATTTTACAAATCTCACAGTCTACT
AGTTTACGATGACGACCATTTACTTACAGGATTTTACGAATCTCACAGTCAGCTAATTTATGATC
ACGACCTTCTATTAGGACTTTTAAGAATCTCGCAGACCGCTAATTTACAACCACAACCATCTACT
TATGGGATTTTAAGAATCTCACAGTCCGCTAATTTACGATCACAACCTTCAACTTACATGATTTT
ACGAATCTAGACATGTTGAGGAAGAACTCAAAACTGACCTTTCTACCCTTCAAAGCAAATTAGAA
GCCAGAGATGATGAATATAAGCGTGTTAAGGAAAAACTCAAAACTAAC
Found at i:80467412 original size:452 final size:443
Alignment explanation
Indices: 80466539--80467474 Score: 1126
Period size: 452 Copynumber: 2.1 Consensus size: 443
80466529 TAGTCCAGTA
* *
80466539 ATTTACGATCACAACCTTCTACTTACATGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
1 ATTTACGATCACGACCTTCTACTTATATGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
* * * *
80466604 AATTGACCCTTTTTCCTTTCAAAGCAAATTAGATGCCAGAGATGATGAATATAAGCGTGTTGCTG
66 AATTGACCCTTTTGCCCTTCAAAGCAAATTAGATGCCAGAGATGATGAATATAAGCATGTTGATG
* * *
80466669 AAGAACTGATCTTGAAAGAAAAATAGATGTATCAATTTTGTTATATTGCCTTAGGAAGGCTGAAG
131 AAGAACTGACCTTGAAAGAAAAATAGAGGTATAAATTTTGTTATATTGCCTTAGGAAGGCTGAAG
* * ** ** * * * *
80466734 TTAGTTTTATTTACCATGTGTTTGAAATGAGGCTTGAAACAGATCGATTTCCTAAAAAAAAGGAA
196 CTAGTTCTATACACCATACGTATGAAATGAGGCTTGAAACAGATCGATTGCCAAAAAAAAAAGAA
* *
80466799 CTTTCCAAAAAACTTTAGCTGATTTACAATCACAACCTTTTACTTTCGGGACTTTATGAATCTCA
261 CTTTCCAAAAAACTTCAGCTGATTTACAATCACAACCTTTTACTTTCGGGACTTTATAAATCTCA
* * * * *
80466864 CAGTCTGTCGATTTTCAATGACGACCTTCAACTTGCGATATTTTAGAGATCTCGTGGTCTGATGA
326 CAGTCTCTCGATTTTCAATGACGACCTTCAACTTACGAGATTTTAGAGATCTCATGGTCTGATAA
** * * *
80466929 TTTATGATAATGACCTTTTACTTACAGGATTTTGTGAATCTCAAGGTTTGCTG
391 TTTATGATAACAACCTTTTACTTACAGGATTTTATGAATCTCAAGGTATACTG
*
80466982 ATTTACGATCACGACCTTCTACTTATGTGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
1 ATTTACGATCACGACCTTCTACTTATATGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
* * * * * *
80467047 AATTGA-CCTCTTTGCCCTTCAGAGTAAGTTAGATGCTAGAGGTGATGAATATAGGCATGTTGAT
66 AATTGACCCT-TTTGCCCTTCAAAGCAAATTAGATGCCAGAGATGATGAATATAAGCATGTTGAT
* * * * *
80467111 GAAGAACTTAAACTGACCTTGAAAGGAAGATAGCGGTATAAATTTTGTTCTATTGCCTTTGTG-A
130 GAAG------AACTGACCTTGAAAGAAAAATAGAGGTATAAATTTTGTTATATTGCCTTAG-GAA
* *
80467175 GGCTGAAGCTAGTTCTCTACACCATACGTATGAAATGAGGCTTGAAATAGATCGATCTGCTCAAA
188 GGCTGAAGCTAGTTCTATACACCATACGTATGAAATGAGGCTTGAAACAGATCGAT-TGC-CAAA
* ** * * *
80467240 AAAATAAAGAGCTTTCTGAAAAACTTCAGTTGATTTACAATCACGATCTTTTACTTTCGGGACTT
251 AAAA-AAAGAACTTTCCAAAAAACTTCAGCTGATTTACAATCACAACCTTTTACTTTCGGGACTT
* * *
80467305 TATAAATTTCACAGTCTACT-GATTTTCAATGATGACCTTCTACTTACGAGATTTTACGA-ATCT
315 TATAAATCTCACAGTCT-CTCGATTTTCAATGACGACCTTCAACTTACGAGATTTTA-GAGATCT
* * ** * * *
80467368 CATGGTCTGCTAATTTATGGTAACAATTTTTTACTTATAGGATTTTATTAATCTCACGGTATACT
378 CATGGTCTGATAATTTATGATAACAACCTTTTACTTACAGGATTTTATGAATCTCAAGGTATACT
80467433 G
443 G
* * * * *
80467434 ATTTATGATCATGACCTTCTATTTATTTGA-TTTACGGATCT
1 ATTTACGATCACGACCTTCTACTTATATGATTTTACGAATCT
80467475 CACGGTCTGT
Statistics
Matches: 414, Mismatches: 66, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
442 3 0.01
443 116 0.28
449 91 0.22
450 3 0.01
451 17 0.04
452 181 0.44
453 3 0.01
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.36
Consensus pattern (443 bp):
ATTTACGATCACGACCTTCTACTTATATGATTTTACGAATCTAGGTGTGTTGAGGAATAACTCAA
AATTGACCCTTTTGCCCTTCAAAGCAAATTAGATGCCAGAGATGATGAATATAAGCATGTTGATG
AAGAACTGACCTTGAAAGAAAAATAGAGGTATAAATTTTGTTATATTGCCTTAGGAAGGCTGAAG
CTAGTTCTATACACCATACGTATGAAATGAGGCTTGAAACAGATCGATTGCCAAAAAAAAAAGAA
CTTTCCAAAAAACTTCAGCTGATTTACAATCACAACCTTTTACTTTCGGGACTTTATAAATCTCA
CAGTCTCTCGATTTTCAATGACGACCTTCAACTTACGAGATTTTAGAGATCTCATGGTCTGATAA
TTTATGATAACAACCTTTTACTTACAGGATTTTATGAATCTCAAGGTATACTG
Found at i:80468258 original size:54 final size:54
Alignment explanation
Indices: 80468133--80468286 Score: 130
Period size: 54 Copynumber: 2.9 Consensus size: 54
80468123 ATGGGGATAC
*** ** * *
80468133 ACAAATCTTATGATCCACTAATTTACGATCAAAACCTTCCT-TTAACAAGACCTT
1 ACAAATCTTATGATCTGTTAATTTACGATCACGACC-TCCTATTTACAAGACATT
* * * *
80468187 ACAAATCTCACGGTCTGTTAATTTACGATCACGACCTCCTATTTACAAGATATT
1 ACAAATCTTATGATCTGTTAATTTACGATCACGACCTCCTATTTACAAGACATT
* * * * * * *
80468241 ACAAATCTTTTGATCTGTTGATTCAAGATTACGACCTTCTACTTAC
1 ACAAATCTTATGATCTGTTAATTTACGATCACGACCTCCTATTTAC
80468287 GTGATTTTAC
Statistics
Matches: 78, Mismatches: 21, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
53 4 0.05
54 74 0.95
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.34
Consensus pattern (54 bp):
ACAAATCTTATGATCTGTTAATTTACGATCACGACCTCCTATTTACAAGACATT
Found at i:80469100 original size:53 final size:53
Alignment explanation
Indices: 80468989--80469137 Score: 145
Period size: 53 Copynumber: 2.8 Consensus size: 53
80468979 TGGTTCGCTG
* * * * *** *
80468989 ATTTACGATCATGACCTGCTACTTAAGAGATTTTACAAATCTCGCAGTCTGTTG
1 ATTTACGATCA-CACCTTCTACTTAAGAGATTTTACAAATCTCACAATCCACTA
* * *
80469043 ATTTACGATCACACCTTCTACCTACGAAATTTTACAAATCTCACAATCCACTA
1 ATTTACGATCACACCTTCTACTTAAGAGATTTTACAAATCTCACAATCCACTA
* * * *
80469096 ATTTACGATTACAACCTTTTACTTATGTGATTTTACAAATCT
1 ATTTACGATCAC-ACCTTCTACTTAAGAGATTTTACAAATCT
80469138 AAATATGTTG
Statistics
Matches: 77, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
53 42 0.55
54 35 0.45
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (53 bp):
ATTTACGATCACACCTTCTACTTAAGAGATTTTACAAATCTCACAATCCACTA
Found at i:80469506 original size:33 final size:33
Alignment explanation
Indices: 80469456--80469521 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
80469446 TCTATGACAA
*
80469456 CCTTCTACTTACGAGATTTTACAAATCTCACGG
1 CCTTCTACTTACAAGATTTTACAAATCTCACGG
* *
80469489 CCTTTTACTTACAAGATTTTACAGATCTCACGG
1 CCTTCTACTTACAAGATTTTACAAATCTCACGG
80469522 TTCACTAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.35
Consensus pattern (33 bp):
CCTTCTACTTACAAGATTTTACAAATCTCACGG
Found at i:80469816 original size:54 final size:54
Alignment explanation
Indices: 80469758--80469879 Score: 147
Period size: 54 Copynumber: 2.3 Consensus size: 54
80469748 CTAAATATGA
* * * **
80469758 GATTTTACGAATCT-TGTGGTCTATTGATTTACGATAACGACCTTTTACTTACAG
1 GATTTTACAAATCTCT-TGGTCCACTGATTTACGATAACGACCTTCAACTTACAG
* * **
80469812 GATTTTACAAATCTCTTGGTCCACTGATTTACGATCATGACCTTCAACTTACTT
1 GATTTTACAAATCTCTTGGTCCACTGATTTACGATAACGACCTTCAACTTACAG
80469866 GATTTTACAAATCT
1 GATTTTACAAATCT
80469880 AGGCATATTG
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 57 0.98
55 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (54 bp):
GATTTTACAAATCTCTTGGTCCACTGATTTACGATAACGACCTTCAACTTACAG
Found at i:80470219 original size:54 final size:54
Alignment explanation
Indices: 80470160--80470369 Score: 161
Period size: 54 Copynumber: 3.9 Consensus size: 54
80470150 TTACTTTCTG
* *
80470160 GATTTTATGAATCTCACGGTCCGCTAATTTACGATCACGACCTTCTACTTACAA
1 GATTTTATGAATCTCACGGTCCGCTAATTTACGATCATGACCTTCTACTAACAA
** ** * ** * *
80470214 GATTTTATGAATCTCACAATTTGATAATTTTAAAATCATAATCTTCTACTAACAA
1 GATTTTATGAATCTCACGGTCCGCTAA-TTTACGATCATGACCTTCTACTAACAA
** * * * ***
80470269 GATTTTACAAATCGCACGGTCCACTGATTTACGATCATGACCTTCTACCT-ATGG
1 GATTTTATGAATCTCACGGTCCGCTAATTTACGATCATGACCTTCTA-CTAACAA
* ** ** * *
80470323 GATTTTATAAATCTCGTGGTTTGCTGATTTAAGATCATGACCTTCTA
1 GATTTTATGAATCTCACGGTCCGCTAATTTACGATCATGACCTTCTA
80470370 GTTACGTGCT
Statistics
Matches: 118, Mismatches: 36, Indels: 4
0.75 0.23 0.03
Matches are distributed among these distances:
54 78 0.66
55 40 0.34
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (54 bp):
GATTTTATGAATCTCACGGTCCGCTAATTTACGATCATGACCTTCTACTAACAA
Found at i:80471424 original size:511 final size:503
Alignment explanation
Indices: 80469838--80471742 Score: 1677
Period size: 508 Copynumber: 3.8 Consensus size: 503
80469828 TGGTCCACTG
* * * * *
80469838 ATTTACGATCATGACCTTCAACTTACTTGATTTTACAAATCTAGGCATATTGAGGAATAACTCAT
1 ATTTACGATCACGACCTTCAACTTACGTGCTTTTACAAATCTAGGCATGTTGAGGAATAACTCAA
* * * * * *
80469903 AATTGACATTTCTATCCTTTAGAGCAAGTTAGAAGCTAGAGCTGATGAATATAGGCGTGTT-AAG
66 AACTGACCTTT-TACCCTTCAGAGCAAGTTAGAAGCTAGAGATGATGAATATAGGCGTGTTGAGG
* *
80469967 AAGAACTCAAAATTAACCTTGAAAGATGGAGGATAGAAGG-ATCAATTTTGTTACATTTTCTTTG
130 AAGAACTC-AAACTAACCTTGAAA-A--GAGGATAG-AGGAATCAATTTTGTTACATTGTCTTTG
* ** * * * * * *
80470031 TGAGGTTGGAGCTAGTTTTCAATACCATACATTTGAAATGAGGCTTCAAATAAATCAATCTACTA
190 TGAGGCTAAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATAGATCGATCTACTT
* * * ** *
80470096 AGAAAAACAA-GAAACTTTCTCAAAACCTTTAGTTTTTTTTTAAATCATGACATTTTACTTTCTG
255 AGAAAAACAAGGAAA-TTTCTGAAAAACTTTAATTGATTTAT-AATCATGACATTTTACTTTCTG
* * * * * *
80470160 GATTTTATGAATCTCACGGTCCGCTAATTTACGATCACGACCTTCTACTTACAAGATTTTATGAA
318 GATTATACGAATCTCACGGTCCGCTAATTTATGATCACAACCTTCTACTTACGAGATTTTACGAA
*** * * *
80470225 TCTCACAATTTGATAATTTTAAAATCATAATCTTCTACTAACAAGATTTTACAAATCGCACGGTC
383 TCTCGTGATTTGATAATTTTAAAATCATGATCTTCTACTAACAGGATTTTACAAATCTC-CGG-C
* * * * ** *
80470290 CACTGATTTACGATCATGACCTTCTACCTATGGGATTTTATAAATCTCGTGGTTTGCTG
446 TACTGATTTACGATCATGACCTTCTACCTATAGGATTTTATGAATCTTGCAG-TTGCTT
* * * * * *
80470349 ATTTAAGATCATGACCTTCTAGTTACGTGCTTTTACAAATCTAGGCGTGTTGAGGAAGAACTCAA
1 ATTTACGATCACGACCTTCAACTTACGTGCTTTTACAAATCTAGGCATGTTGAGGAATAACTCAA
* * * * *
80470414 AACTGACGTCTTTT-CCCTTCAGAGCAAGCTAGATGCTAAAGATGATGAATATAGGCATGTTAAG
66 AACTGAC--CTTTTACCCTTCAGAGCAAGTTAGAAGCTAGAGATGATGAATATAGGCGTGTTGAG
* * * * * *
80470478 GAAGAACTCAAACTAACCTTGAAAAGAGGATAGAGGTATCAATTTTGTTATATTGCCTTTATAAT
129 GAAGAACTCAAACTAACCTTGAAAAGAGGATAGAGGAATCAATTTTGTTACATTGTCTTTGTGAG
* * ** * * * * * *
80470543 GCT-GAGTTAGTTCTCTTCTCCAAACGTCTGAAATGAGGCTTGAAAT-GCATTGATCTGCTTAGA
194 GCTAAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATAG-ATCGATCTACTTAGA
* * * *
80470606 AAAACAAGGAACTTTATGAAAAACTTT-A--G--TTAT--T-ATGACCTTTTAC-TTCTGGGTCT
258 AAAACAAGGAAATTTCTGAAAAACTTTAATTGATTTATAATCATGACATTTTACTTTCTGGAT-T
* * * ** * * * * ** * *
80470662 AAACAAATCTCATGGTCTACTAATTTTTTATGACAACCTTCAAAATATGAGATTTTACGAATCTT
322 ATACGAATCTCACGGTCCGCTAATTTATGATCACAACCTTCTACTTACGAGATTTTACGAATCTC
* * * * * * * * * * *
80470727 GTGGTCTGTTGA-TTTACAATAATGA-CTTTTATTTAC-GAGATTTTACGAATCTCCTGGTTCAC
387 GTGATTTGATAATTTTAAAATCATGATCTTCTACTAACAG-GATTTTACAAATCTCC-GGCT-AC
* * * * * *
80470789 TGATTTATGATCACGA-CATCTACTTATAGGATTTCATGAATCTT-CTA-TTTCGTT
449 TGATTTACGATCATGACCTTCTACCTATAGGATTTTATGAATCTTGC-AGTTGC-TT
* * * *
80470843 GATTTACGATCACGACCTTCAACTTA-GTTGGTTATACGAATCTAGGCATGTTGAGGAATGACTC
1 -ATTTACGATCACGACCTTCAACTTACG-TGCTTTTACAAATCTAGGCATGTTGAGGAATAACTC
** *
80470907 AAAACTGACCTTTCTACTATTCAGAGCAAGTTAAAAGCTAGAGATGATGAATATAGGCGTGTTGA
64 AAAACTGACCTTT-TACCCTTCAGAGCAAGTTAGAAGCTAGAGATGATGAATATAGGCGTGTTGA
* * *
80470972 GGAAGAACTCAAAATTGACCTTGAAAGAAGGAGGATAGAGGAATAAATTTTGTTACATTGTCTTT
128 GGAAGAACTC-AAACTAACCTTG-AA-AA-GAGGATAGAGGAATCAATTTTGTTACATTGTCTTT
* * * *
80471037 GTGAGGCTAAAGCTAGTTCTCAACACCATACATTTGAAATGAGGTTTGTAATGGATCGATCTGCT
189 GTGAGGCTAAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATAGATCGATCTACT
* * * * * *
80471102 CAGAAGAACAATGAAATTTCT-TAAAAGTTTCAATTGATTTATAATCATGACATTTTACTTTTTG
254 TAGAAAAACAAGGAAATTTCTGAAAAACTTT-AATTGATTTATAATCATGACATTTTACTTTCTG
* * * * **
80471166 GATTTTACGAATCTCGCGGTCCGTTGATTTATGATCATGACCTTCTACTTACGAGATTTTACGAA
318 GATTATACGAATCTCACGGTCCGCTAATTTATGATCACAACCTTCTACTTACGAGATTTTACGAA
* * *
80471231 TCTCGTGATTTGCTAATTTTAAAATCACGATCTTCTACTAACAGGATTTTACAAATATCGCGGAC
383 TCTCGTGATTTGATAATTTTAAAATCATGATCTTCTACTAACAGGATTTTACAAATCTC-CGG-C
* * * * *
80471296 TGCTAATTTACGATCATTACCTTCTACCTACAGGATTTTATGAACCTTGCAGTCTGCTT
446 TACTGATTTACGATCATGACCTTCTACCTATAGGATTTTATGAATCTTGCAGT-TGCTT
* * * ** *
80471355 ATTTACGATCACAACCTTCTACTTACGTGCTTTTACGAATCTAGGTGTGTTAAGGAATAACTCAA
1 ATTTACGATCACGACCTTCAACTTACGTGCTTTTACAAATCTAGGCATGTTGAGGAATAACTCAA
* * * * * *
80471420 AACTGACCCCTTTGCCCTTCAAAGCAAGTT-GATTA-CTAGAGATAATGGATATAAGCGTGTTGA
66 AACTGA-CCTTTTACCCTTCAGAGCAAGTTAGA--AGCTAGAGATGATGAATATAGGCGTGTTGA
* * *
80471483 GGAAGAACTCAAACTAACCCTGAAAAGAGGATAGAGGTATATCGATTTTGTTATATTGT-TTTGT
128 GGAAGAACTCAAACTAACCTTGAAAAGAGGATAGAGG-A-ATCAATTTTGTTACATTGTCTTTGT
** * *
80471547 GAGTATGAAA-CTAGTTCTCAACACCATACATATGAAATGAGGCTTGAAATAGATCGAACTACTT
191 GAGGCT-AAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATAGATCGATCTACTT
* * * * * * * *
80471611 AGAAAAATAAGGAACTTTCTGAAAAACTTTAGTTGATTTATGATCACGACCTTTTACTTCCAGGA
255 AGAAAAACAAGGAAATTTCTGAAAAACTTTAATTGATTTATAATCATGACATTTTACTTTCTGGA
* * * * * * * * * *
80471676 CTATACGAATTTCATGGTTCGTTGATTTTTAATGACAACCTTTTACTTACGAGATTTTACGAATC
320 TTATACGAATCTCACGGTCCGCTAATTTATGATCACAACCTTCTACTTACGAGATTTTACGAATC
80471741 TC
385 TC
80471743 ACGGTCTACT
Statistics
Matches: 1097, Mismatches: 248, Indels: 101
0.76 0.17 0.07
Matches are distributed among these distances:
493 7 0.01
494 3 0.00
495 134 0.12
496 49 0.04
497 19 0.02
498 65 0.06
499 44 0.04
500 59 0.05
501 2 0.00
502 3 0.00
503 1 0.00
505 4 0.00
507 78 0.07
508 259 0.24
509 44 0.04
510 47 0.04
511 253 0.23
512 21 0.02
513 5 0.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (503 bp):
ATTTACGATCACGACCTTCAACTTACGTGCTTTTACAAATCTAGGCATGTTGAGGAATAACTCAA
AACTGACCTTTTACCCTTCAGAGCAAGTTAGAAGCTAGAGATGATGAATATAGGCGTGTTGAGGA
AGAACTCAAACTAACCTTGAAAAGAGGATAGAGGAATCAATTTTGTTACATTGTCTTTGTGAGGC
TAAAGCTAGTTCTCAACACCATACATTTGAAATGAGGCTTGAAATAGATCGATCTACTTAGAAAA
ACAAGGAAATTTCTGAAAAACTTTAATTGATTTATAATCATGACATTTTACTTTCTGGATTATAC
GAATCTCACGGTCCGCTAATTTATGATCACAACCTTCTACTTACGAGATTTTACGAATCTCGTGA
TTTGATAATTTTAAAATCATGATCTTCTACTAACAGGATTTTACAAATCTCCGGCTACTGATTTA
CGATCATGACCTTCTACCTATAGGATTTTATGAATCTTGCAGTTGCTT
Found at i:80471825 original size:54 final size:54
Alignment explanation
Indices: 80471698--80471832 Score: 135
Period size: 54 Copynumber: 2.5 Consensus size: 54
80471688 CATGGTTCGT
* * * *
80471698 TGATTTTTAATGACAACCTTTTACTTACGAGATTTTACGAATCTCACGGTCTAC
1 TGATTTTTAATAACAACCTTTTATTTACGAGATTTTACGAATCTCACGATCCAC
* ** * * * *
80471752 TAATTGATGATAACAACCTTTTATTTACGGGATTTTATGAATCTCACGATCCGC
1 TGATTTTTAATAACAACCTTTTATTTACGAGATTTTACGAATCTCACGATCCAC
* * * *
80471806 TGATTTTTTATCACGACCTTCTATTTA
1 TGATTTTTAATAACAACCTTTTATTTA
80471833 TGTGATTTAC
Statistics
Matches: 63, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (54 bp):
TGATTTTTAATAACAACCTTTTATTTACGAGATTTTACGAATCTCACGATCCAC
Found at i:80471947 original size:54 final size:54
Alignment explanation
Indices: 80471837--80471986 Score: 158
Period size: 54 Copynumber: 2.8 Consensus size: 54
80471827 TATTTATGTG
* * * * *
80471837 ATTTACAATCACAACCTTTTACATACGGGATTTTATGAATCTCGTGATCCGCTA
1 ATTTAAAATAACAACCTTCTACTTACGGGATTTTATGAATCTCGAGATCCGCTA
* * * *
80471891 ATTTAAAATAATAACCTTCTACTTACAGGGA-TTTATGAATCTCGAGGTCTGTTA
1 ATTTAAAATAACAACCTTCTACTTAC-GGGATTTTATGAATCTCGAGATCCGCTA
* * * * *
80471945 ATTTATAATCACAACCTTCTAATTACGTGATTTTACGAATCT
1 ATTTAAAATAACAACCTTCTACTTACGGGATTTTATGAATCT
80471987 AGGCATGTTG
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 3 0.04
54 72 0.91
55 4 0.05
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (54 bp):
ATTTAAAATAACAACCTTCTACTTACGGGATTTTATGAATCTCGAGATCCGCTA
Found at i:80472497 original size:108 final size:107
Alignment explanation
Indices: 80472363--80472629 Score: 263
Period size: 108 Copynumber: 2.5 Consensus size: 107
80472353 TGAATCTTAG
* * * * * * *
80472363 GGTTCGCTGATTTATGGTAACAACCTTTTATTTACGGGATTCAACGAATCTCATGGGATGTTGAT
1 GGTTCGCTGATTTACGATCA-AACCTTTTATTTACGAGATTCTACGAATCTCATAGGATGTTAAT
** *
80472428 TTACGATCACGACCTTTTACTTATGGGGATA-TACAAATCTCGC
65 TTACGATCACGACCTCCTACTTA-CGGGATATTACAAATCTCGC
* **
80472471 GGTTCGCTGATTTACGATCAAGACCTTCTT-TTTACAAGA-TCTTACGAATCTCATAGTCTGTTA
1 GGTTCGCTGATTTACGATCAA-ACCTT-TTATTTACGAGATTC-TACGAATCTCATAGGATGTTA
* *
80472534 ATTTACGATCACGACCTCCTATTTACGGGATATTACTAATCTCGC
63 ATTTACGATCACGACCTCCTACTTACGGGATATTACAAATCTCGC
* * * * *
80472579 -GATCTGCTGATTTACGATCACATCCTTTTACTTACGTGATTTTACGAATCT
1 GGTTC-GCTGATTTACGATCA-AACCTTTTATTTACGAGATTCTACGAATCT
80472630 AGGCATGTTG
Statistics
Matches: 130, Mismatches: 21, Indels: 16
0.78 0.13 0.10
Matches are distributed among these distances:
107 14 0.11
108 112 0.86
109 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (107 bp):
GGTTCGCTGATTTACGATCAAACCTTTTATTTACGAGATTCTACGAATCTCATAGGATGTTAATT
TACGATCACGACCTCCTACTTACGGGATATTACAAATCTCGC
Found at i:80472614 original size:54 final size:54
Alignment explanation
Indices: 80472315--80472629 Score: 180
Period size: 54 Copynumber: 5.8 Consensus size: 54
80472305 TCATTGTGTA
* * * * * * * *
80472315 CTGATTTACAATAACGACCTTTTACTTACAGGATTTTATGAATCTTAGGGTTC-G
1 CTGATTTACGATCACGACCTTTTACTTACGGGATATTACGAATC-TCGCGATCTG
* * * * * * *
80472369 CTGATTTATGGTAACAACCTTTTATTTACGGGAT-TCAACGAATCTCATGGGA--TG
1 CTGATTTACGATCACGACCTTTTACTTACGGGATAT-TACGAATCTC--GCGATCTG
* * * *
80472423 TTGATTTACGATCACGACCTTTTACTTATGGGGATA-TACAAATCTCGCGGT-TCG
1 CTGATTTACGATCACGACCTTTTACTTA-CGGGATATTACGAATCTCGCGATCT-G
* * ** * **
80472477 CTGATTTACGATCAAGACCTTCTT-TTTACAAGATCTTACGAATCTC-ATAGTCTG
1 CTGATTTACGATCACGACCTT-TTACTTACGGGATATTACGAATCTCGCGA-TCTG
* * ** * *
80472531 TTAATTTACGATCACGACCTCCTATTTACGGGATATTACTAATCTCGCGATCTG
1 CTGATTTACGATCACGACCTTTTACTTACGGGATATTACGAATCTCGCGATCTG
* *
80472585 CTGATTTACGATCAC-ATCCTTTTACTTACGTGATTTTACGAATCT
1 CTGATTTACGATCACGA-CCTTTTACTTACGGGATATTACGAATCT
80472630 AGGCATGTTG
Statistics
Matches: 195, Mismatches: 51, Indels: 30
0.71 0.18 0.11
Matches are distributed among these distances:
52 2 0.01
53 8 0.04
54 173 0.89
55 12 0.06
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.37
Consensus pattern (54 bp):
CTGATTTACGATCACGACCTTTTACTTACGGGATATTACGAATCTCGCGATCTG
Found at i:80472994 original size:54 final size:53
Alignment explanation
Indices: 80472936--80473062 Score: 125
Period size: 54 Copynumber: 2.4 Consensus size: 53
80472926 CGATCTGCCA
* * * * *
80472936 ATTTATGATGACGACCTTTTACTTATGCGATTTTACGAAT-CACATGGTCCACAG
1 ATTTACGATAACGACCTTCTAATAATG-GATTTTACGAATACA-ATGGTCCACAG
*
80472990 ATTTACGATAACGACCTTCTAATAATGGATTTTATGAATACAATGGT-CACTA-
1 ATTTACGATAACGACCTTCTAATAATGGATTTTACGAATACAATGGTCCAC-AG
* **
80473042 ATTTACAATCGCGACCTTCTA
1 ATTTACGATAACGACCTTCTA
80473063 CTTACGTGTT
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
52 21 0.34
53 17 0.27
54 24 0.39
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (53 bp):
ATTTACGATAACGACCTTCTAATAATGGATTTTACGAATACAATGGTCCACAG
Found at i:80473037 original size:53 final size:53
Alignment explanation
Indices: 80472935--80473062 Score: 127
Period size: 52 Copynumber: 2.4 Consensus size: 53
80472925 ACGATCTGCC
* * * * *
80472935 AATTTATGATGACGACCTTTTACTTATGCGATTTTACGAATCACATGGTCCAC-
1 AATTTACGATAACGACCTTCTAATAATGCGATTTTACGAATCACATGGT-CACT
*
80472988 AGATTTACGATAACGACCTTCTAATAATG-GATTTTATGAAT-ACAATGGTCACT
1 A-ATTTACGATAACGACCTTCTAATAATGCGATTTTACGAATCAC-ATGGTCACT
* **
80473041 AATTTACAATCGCGACCTTCTA
1 AATTTACGATAACGACCTTCTA
80473063 CTTACGTGTT
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
52 23 0.37
53 18 0.29
54 22 0.35
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (53 bp):
AATTTACGATAACGACCTTCTAATAATGCGATTTTACGAATCACATGGTCACT
Found at i:80473501 original size:54 final size:54
Alignment explanation
Indices: 80473391--80473521 Score: 131
Period size: 54 Copynumber: 2.4 Consensus size: 54
80473381 GTTTCAGTTT
* * * ** *
80473391 ATTTACAATCATGACCTTTTACTTTCTGGATTTTAAGAATCTCAGGGTTCGTTG
1 ATTTACAATCATGATCTTTTACTATATGGATTTTAAGAATCTCACAGTTCGCTG
* *
80473445 ATTTACAATCATGATCTTTTAC-ATATGAGATTTTACA-AATCTCTCAGTTTGCTG
1 ATTTACAATCATGATCTTTTACTATATG-GATTTTA-AGAATCTCACAGTTCGCTG
* * *
80473499 ATTTACGATGATGATCATTTACT
1 ATTTACAATCATGATCTTTTACT
80473522 TACAGGATTT
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
53 3 0.05
54 59 0.94
55 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (54 bp):
ATTTACAATCATGATCTTTTACTATATGGATTTTAAGAATCTCACAGTTCGCTG
Found at i:80473720 original size:243 final size:243
Alignment explanation
Indices: 80473287--80473775 Score: 533
Period size: 243 Copynumber: 2.0 Consensus size: 243
80473277 TTACATTGCC
** *
80473287 TTTGTGAGGCTGAAGCTAGTTCTCATCTTCACACATCTGAAATAAGGCTTCAAATTGATCAATCT
1 TTTGTGAGGCTGAAGCTAGTTCTCATCACCACACATCTGAAATAAGGCTTCAAATGGATCAATCT
* * * *
80473352 GTTCAAAAAAATAAGGAACTTTTTAAAAAGTTTCAGTTTATTTACAATCATGACCTTTTACTTTC
66 CTTCAAAAAAATAAGGAACTTTCTAAAAAGTTTCAGTTGATTTACAATCACGACCTTTTACTTTC
* * * * ** * * * * * *
80473417 TGGATTTTAAGAATCTCAGGGTTCGTTGATTTACAATCATGATCTTTTACATATGAGATTTTACA
131 GGGATTTTAAGAACCTCACGGTCCACTAATTTACAATCATAACCTTGTACATAAGAGATTTCACA
* * * *
80473482 AATCT-CTCAGTTTGCTGATTTACGATGATGATCA-TTTACTTACAGGAT
196 AATCTACT-AGTCTACTAATTTACGATAATGA-CATTTTACTTACAGGAT
* * * * *
80473530 TTTGTGAGGCTGAAGCTATTTCTCCTCACCATACATCTGAAATGAGGCTTGAAATGGATCAATCT
1 TTTGTGAGGCTGAAGCTAGTTCTCATCACCACACATCTGAAATAAGGCTTCAAATGGATCAATCT
*
80473595 ACTT-AAAAAAATAAGGAACTTTCTAAAGAGCTTT-AGTTGATTTAC-ATACACGACCTTTTACT
66 -CTTCAAAAAAATAAGGAACTTTCTAAAAAG-TTTCAGTTGATTTACAAT-CACGACCTTTTACT
* ** **
80473657 TAT-GGGATTTTACA-AACCTTACGGTCCACTAATTTACTGTCATAACCTTGTATTTAAGAGATT
128 T-TCGGGATTTTA-AGAACCTCACGGTCCACTAATTTACAATCATAACCTTGTACATAAGAGATT
* * *
80473720 TCACGAATCTAGTAGTCTACTAATTTACGATAATGACATTTTACTTACGGGAT
191 TCACAAATCTACTAGTCTACTAATTTACGATAATGACATTTTACTTACAGGAT
80473773 TTT
1 TTT
80473776 ACAAATATCA
Statistics
Matches: 202, Mismatches: 37, Indels: 14
0.80 0.15 0.06
Matches are distributed among these distances:
242 4 0.02
243 190 0.94
244 8 0.04
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (243 bp):
TTTGTGAGGCTGAAGCTAGTTCTCATCACCACACATCTGAAATAAGGCTTCAAATGGATCAATCT
CTTCAAAAAAATAAGGAACTTTCTAAAAAGTTTCAGTTGATTTACAATCACGACCTTTTACTTTC
GGGATTTTAAGAACCTCACGGTCCACTAATTTACAATCATAACCTTGTACATAAGAGATTTCACA
AATCTACTAGTCTACTAATTTACGATAATGACATTTTACTTACAGGAT
Found at i:80473855 original size:24 final size:24
Alignment explanation
Indices: 80473818--80473881 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 24
80473808 AACCTTCTTC
80473818 TTATTAGATTTTATGAATCTCACAGT
1 TTATT-GA-TTTATGAATCTCACAGT
*
80473844 TTATTGATTTATGAATCTCGCAGT
1 TTATTGATTTATGAATCTCACAGT
**
80473868 CCATTGATTTATGA
1 TTATTGATTTATGA
80473882 TAACGACCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
24 28 0.80
25 2 0.06
26 5 0.14
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.45
Consensus pattern (24 bp):
TTATTGATTTATGAATCTCACAGT
Found at i:80474016 original size:54 final size:54
Alignment explanation
Indices: 80473884--80474016 Score: 122
Period size: 54 Copynumber: 2.5 Consensus size: 54
80473874 ATTTATGATA
* * * * * ** **
80473884 ACGACCTTCTACTAACGGGATTTTATGAATCTTTTAATCTGTTAATTTACTATC
1 ACGACCTTCTACTTACGAGATTTTAAGAAACTTGTAATCTACTAATTTAAAATC
* * * * **
80473938 ATGACCTTCTACCTAAGAGTTTTTAAGAAACTTGTGGTCTACTAATTTAAAATC
1 ACGACCTTCTACTTACGAGATTTTAAGAAACTTGTAATCTACTAATTTAAAATC
*
80473992 ACGACCTTCTACTTACGTGATTTTA
1 ACGACCTTCTACTTACGAGATTTTA
80474017 CAAATCTAGG
Statistics
Matches: 59, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (54 bp):
ACGACCTTCTACTTACGAGATTTTAAGAAACTTGTAATCTACTAATTTAAAATC
Found at i:80474454 original size:55 final size:54
Alignment explanation
Indices: 80474351--80474460 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 54
80474341 ATTTACAATT
* *
80474351 ATGACCTTTTACTTATGGGACTTTATAAATCTCACGATCTGCTAATTTATGGATC
1 ATGACCTTTTACTTATGGGACTTTATAAATATCACGATCCGCTAATTTAT-GATC
* * * * * * *
80474406 ATGACCTTTTACTTTTTGGATTTTATGAATATCGCGGTCCGCTGATTTATGATC
1 ATGACCTTTTACTTATGGGACTTTATAAATATCACGATCCGCTAATTTATGATC
80474460 A
1 A
80474461 CAACCTTCTA
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
54 5 0.11
55 41 0.89
ACGTcount: A:0.25, C:0.17, G:0.16, T:0.42
Consensus pattern (54 bp):
ATGACCTTTTACTTATGGGACTTTATAAATATCACGATCCGCTAATTTATGATC
Found at i:80474577 original size:54 final size:54
Alignment explanation
Indices: 80474448--80474583 Score: 134
Period size: 54 Copynumber: 2.5 Consensus size: 54
80474438 CGCGGTCCGC
* * * * *
80474448 TGATTTATGATCAC-AACCTTCTAATTACATGATTTTACGAATCTCGTGTTCCGT
1 TGATTTACGATCACGAA-CTTCTAATTACAAGATTTTACAAATCACGTGTTCCAT
* * * *
80474502 TGATTTACAAT-ATTGACCTTCTAGTTACAAGATTTTACAAATCACGTGGTT-CAT
1 TGATTTACGATCA-CGAACTTCTAATTACAAGATTTTACAAATCACGT-GTTCCAT
*
80474556 TGATTTACGATCACGAACTTCTACTTAC
1 TGATTTACGATCACGAACTTCTAATTAC
80474584 GTTACTTTAC
Statistics
Matches: 65, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
53 1 0.02
54 59 0.91
55 5 0.08
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (54 bp):
TGATTTACGATCACGAACTTCTAATTACAAGATTTTACAAATCACGTGTTCCAT
Found at i:80478871 original size:214 final size:213
Alignment explanation
Indices: 80478470--80478897 Score: 698
Period size: 214 Copynumber: 2.0 Consensus size: 213
80478460 GGGCCGTATG
* * *
80478470 TCTGTTACGGAATACGAACGAGAATTTGTTAAATTAAGTCAATATGCATGAGAATGTGTTTCGAC
1 TCTGTTACAGAATACGAACGAGAATTTGTTAAATTAAGTCAATATGCACGAGAATGTGCTTCGAC
* *
80478535 TAAAGCTATAATGTGTAAGATATTTGAATATGGTTGAATGAAGATATTCGATTGTTAGTTGGAAT
66 TAAAGCTATAATGTGTAAGATATTTAAAGATGGTTGAATGAAGATATTCGATTGTTAGTTGGAAT
80478600 TCAGGAAATCAAAAAGTTTGTGGTACTCGTCGAGCAAGCAAGTAAAGCTGAAGAACTCGGGAAAG
131 TCAGGAAATCAAAAAGTTTGTGGTACTCGTCGAGCAAGCAAGTAAAGCTGAAGAACTCGGGAAA-
80478665 A-GAAAAGAAAAGCGGATT
195 ATGAAAAGAAAAGCGGATT
* *
80478683 TCTGTTACAGAATATGAACGAGAATTTGTTAAATTAAGTTAATATGCACGAGAATGTGCTTCGAC
1 TCTGTTACAGAATACGAACGAGAATTTGTTAAATTAAGTCAATATGCACGAGAATGTGCTTCGAC
* *
80478748 TGAAGCTATAATGTGTAAGATATTTAAAGATGGCTTGAATGAAGATATTCGGTTGTTAGTTGGAA
66 TAAAGCTATAATGTGTAAGATATTTAAAGATGG-TTGAATGAAGATATTCGATTGTTAGTTGGAA
* * * *
80478813 TTCTA-GAAATCAAAGAGTTTGTGGTTCTCGTCGAGCGAGCATGTAAAGCTGAAGAACTCGGGAA
130 TTC-AGGAAATCAAAAAGTTTGTGGTACTCGTCGAGCAAGCAAGTAAAGCTGAAGAACTCGGGAA
80478877 AATGAAAAGAAAAGCGGATT
194 AATGAAAAGAAAAGCGGATT
80478897 T
1 T
80478898 TGAAGCTAGA
Statistics
Matches: 199, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
213 91 0.46
214 107 0.54
215 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (213 bp):
TCTGTTACAGAATACGAACGAGAATTTGTTAAATTAAGTCAATATGCACGAGAATGTGCTTCGAC
TAAAGCTATAATGTGTAAGATATTTAAAGATGGTTGAATGAAGATATTCGATTGTTAGTTGGAAT
TCAGGAAATCAAAAAGTTTGTGGTACTCGTCGAGCAAGCAAGTAAAGCTGAAGAACTCGGGAAAA
TGAAAAGAAAAGCGGATT
Found at i:80481750 original size:119 final size:120
Alignment explanation
Indices: 80481574--80481796 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
80481564 TACTCGTTCA
* * * *
80481574 AATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
*
80481639 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * *
80481694 AATGCCTTCGGG-CTTAGCCTGGA-ATTAGTAACTCACACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
80481756 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
80481797 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:80481796 original size:40 final size:40
Alignment explanation
Indices: 80481553--80481796 Score: 282
Period size: 40 Copynumber: 6.1 Consensus size: 40
80481543 CGGAATTTAA
** *
80481553 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80481593 CCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80481633 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80481673 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
80481712 CTGGA-ATTAGTAACTCACACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
80481752 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80481792 CCGGA
1 CCGGA
80481797 CATCATTCAA
Statistics
Matches: 176, Mismatches: 21, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 31 0.18
40 132 0.75
41 11 0.06
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80484784 original size:53 final size:54
Alignment explanation
Indices: 80484653--80484784 Score: 133
Period size: 53 Copynumber: 2.5 Consensus size: 54
80484643 AAATCCCATT
* *
80484653 AGTAGAAGGTCGTGATCT-TAAATCAACAAACTGGGAGATTCATAAAATCTTGCA
1 AGTAGAAGGTCGTAAT-TGTAAATCAACAAACTGCGAGATTCATAAAATCTTGCA
* * * * ** * * * *
80484707 AATAAAAGGTCGTCATCGCCAATCAA-TAAGTGCGAGATTCGTAAAATCTTGTA
1 AGTAGAAGGTCGTAATTGTAAATCAACAAACTGCGAGATTCATAAAATCTTGCA
80484760 AGTAGAAGGTCGTAATTGTAAATCA
1 AGTAGAAGGTCGTAATTGTAAATCA
80484785 GCGGACCTCT
Statistics
Matches: 60, Mismatches: 17, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
53 41 0.68
54 19 0.32
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (54 bp):
AGTAGAAGGTCGTAATTGTAAATCAACAAACTGCGAGATTCATAAAATCTTGCA
Found at i:80484946 original size:54 final size:54
Alignment explanation
Indices: 80484887--80485145 Score: 207
Period size: 54 Copynumber: 4.8 Consensus size: 54
80484877 GAATCACATT
* * *
80484887 GTCTACTGATTTACGATAACAATCTTCTACTTAAGAGATTTTATTAATCTCACG
1 GTCTACTGATTTACGATCACAACCTTCTACTTAAGAGATTTTATGAATCTCACG
* * ** * * * * ***
80484941 ATCTACTGATTTACGATGATGACCTTTTACTTATGGGATTTTATGAATTTGTTG
1 GTCTACTGATTTACGATCACAACCTTCTACTTAAGAGATTTTATGAATCTCACG
* * * **
80484995 GTCCACTGATTTACGATCACAAACTTCTACTTAAGGGATTTTACTG-ATCTTGCG
1 GTCTACTGATTTACGATCACAACCTTCTACTTAAGAGATTTTA-TGAATCTCACG
* ** * ***
80485049 GTCTACTGATTTATGATCATGACCTTCTACTTACGAGATTTTATGAATCTCGTA
1 GTCTACTGATTTACGATCACAACCTTCTACTTAAGAGATTTTATGAATCTCACG
* * * * *
80485103 GTCTGCTGATTTATGATTACAACATTATACTTAA-ATGATTTTA
1 GTCTACTGATTTACGATCACAACCTTCTACTTAAGA-GATTTTA
80485146 CGGATCTAGA
Statistics
Matches: 160, Mismatches: 42, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
53 3 0.02
54 155 0.97
55 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (54 bp):
GTCTACTGATTTACGATCACAACCTTCTACTTAAGAGATTTTATGAATCTCACG
Found at i:80485112 original size:108 final size:108
Alignment explanation
Indices: 80484887--80485152 Score: 295
Period size: 108 Copynumber: 2.5 Consensus size: 108
80484877 GAATCACATT
* * *
80484887 GTCTACTGATTTACGATAACAATCTTCTACTTAAGAGATTTTATTAATCTCACGATCTACTGATT
1 GTCTACTGATTTACGATAACAAACTTCTACTTAAGAGATTTTACTGATCTCACGATCTACTGATT
* * * * * *
80484952 TACGATGATGACCTTTTACTTATGGGATTTTATGAATTTGTTG
66 TACGATCATGACCTTCTACTTACGAGATTTTATGAATTCGTTA
* * * ** *
80484995 GTCCACTGATTTACGATCACAAACTTCTACTTAAGGGATTTTACTGATCTTGCGGTCTACTGATT
1 GTCTACTGATTTACGATAACAAACTTCTACTTAAGAGATTTTACTGATCTCACGATCTACTGATT
*
80485060 TATGATCATGACCTTCTACTTACGAGATTTTATGAATCTCG-TA
66 TACGATCATGACCTTCTACTTACGAGATTTTATGAAT-TCGTTA
* * * * *
80485103 GTCTGCTGATTTATGATTAC-AACATTATACTTAA-ATGATTTTACGGATCT
1 GTCTACTGATTTACGATAACAAAC-TTCTACTTAAGA-GATTTTACTGATCT
80485153 AGACGTGTTG
Statistics
Matches: 132, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
107 3 0.02
108 127 0.96
109 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (108 bp):
GTCTACTGATTTACGATAACAAACTTCTACTTAAGAGATTTTACTGATCTCACGATCTACTGATT
TACGATCATGACCTTCTACTTACGAGATTTTATGAATTCGTTA
Found at i:80485486 original size:54 final size:54
Alignment explanation
Indices: 80485428--80485586 Score: 221
Period size: 54 Copynumber: 2.9 Consensus size: 54
80485418 TTATCTACGA
80485428 GATTTTATGAATCTGACAGTCTTTTGATTTACGATCACGACCTTCTACTTATGG
1 GATTTTATGAATCTGACAGTCTTTTGATTTACGATCACGACCTTCTACTTATGG
* *
80485482 GATTTTATGAATCTGACAATCTTTTGATTTACGATCGCGACCTTCTACTTATGG
1 GATTTTATGAATCTGACAGTCTTTTGATTTACGATCACGACCTTCTACTTATGG
* * *** * *
80485536 GATTTTACGAATCTCAC-GATCCACTGATTTATGATCACAACCTTCTACTTA
1 GATTTTATGAATCTGACAG-TCTTTTGATTTACGATCACGACCTTCTACTTA
80485587 CATGATTTTA
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 93 1.00
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (54 bp):
GATTTTATGAATCTGACAGTCTTTTGATTTACGATCACGACCTTCTACTTATGG
Found at i:80485841 original size:451 final size:449
Alignment explanation
Indices: 80485001--80486207 Score: 1080
Period size: 451 Copynumber: 2.7 Consensus size: 449
80484991 GTTGGTCCAC
* * ** *
80485001 TGATTTACGATCACAAACTTCTACTTAAGGGATTTTACTG-ATCTTGCGGTCTACTGATTTATGA
1 TGATTTACGATCACGACCTTCTACTTAAGGGATTTTA-TGAATC-TGCAATCTACTGATTTACGA
* * ** *
80485065 TCATGACCTTCTACTTACGAGATTTTATGAATCTCGTAGTCTGCTGATTTATGATTACAACATTA
64 TCACGACCTTCTACTTACGAGATTTTACGAATCTCGTAGTCCACTGATTTATGATCACAACATTA
** * * * * * * *
80485130 TACTTAAATGATTTTACGGATCTAGACGTGTTGAGGAAGAACTTAAAATTGACCTATTTTCCTTT
129 TACTTAAATGATTTTACAAATATAGACATGTTAAGGAAGAACTCAAAACTGACCTATTTCCCTTC
* * * * *
80485195 AAAGCAAGTTAGATGCTAGAGATGATGAATATAGGGGTGTTGAGGATGAATTCAAAATTGAGCAT
194 AAAGCAAGTTAAATGCTAGAGATGATGAATATAGGCGTGTTGAGGA-GAACTCAAAACTGACCAT
* *
80485260 AAAAGATGGATGATAGGGGAATCAATTTTGTTACATTGCCTTTGTGAGCTGAAGCTAGTTTTCTT
258 AAAAGATGGATGATAGGGGAATCAATTTTGTTACATTACCTTTGTGAGCTGAAACTAGTTTTCTT
* * * * * * * * *
80485325 CGCCATAGGTTTGTAATGAGGCTTGAAATGGATCAATCTGTTAAAAAAAAGTAACTTTCTGAAAA
323 CACAATAAGTCTGAAATAAGGCTTGAAATGGATCAATCTCTCAAAAAAAAGGAACTTTCTGAAAA
* * *
80485390 GCTTCAGTTGACTTACAATCACGACATTTTA-TCTAC-GAGATTTTATGAATCTGACAGTCTTT
388 GCTTCAGTTGACTTACAATCACGACATTTTACT-TACAG-GATTTTACGAATCTAACAGTCTGT
* **
80485452 TGATTTACGATCACGACCTTCTACTTATGGGATTTTATGAATCTGACAATCTTTTGATTTACGAT
1 TGATTTACGATCACGACCTTCTACTTAAGGGATTTTATGAATCTG-CAATCTACTGATTTACGAT
* * * *
80485517 CGCGACCTTCTACTTATGGGATTTTACGAATCTC--ACGATCCACTGATTTATGATCACAACCTT
65 CACGACCTTCTACTTACGAGATTTTACGAATCTCGTA-G-TCCACTGATTTATGATCACAACATT
* * * * *
80485580 CTACTTACATGATTTTACAAATATAGGCATGTTAAGGATGAACTCAAAACTGATC-ATTCTGCCC
128 ATACTTAAATGATTTTACAAATATAGACATGTTAAGGAAGAACTCAAAACTGACCTATT-T-CCC
80485644 TTCAGAA-CAAGTTAAATGCTAGAGATGATGAATATAGGCGTGTTGAGGA-AACTCAAAACTGAC
191 TTCA-AAGCAAGTTAAATGCTAGAGATGATGAATATAGGCGTGTTGAGGAGAACTCAAAACTGAC
* * * * * * *
80485707 CTTGAAAGGA-GGAT-A-A-TGGAATTAATTTTGTTATATTACTTTTGTGAGGTAGAAACTAGTT
255 CAT-AAAAGATGGATGATAGGGGAATCAATTTTGTTACATTACCTTTGTGAGCT-GAAACTAGTT
* **
80485768 CTT-TTCACAATAAGTCTGAAATAAGGCTTGAAATGTATTGATCTACTCAGAAAAACAAGGAACT
318 -TTCTTCACAATAAGTCTGAAATAAGGCTTGAAATGGATCAATCT-CTCA-AAAAA-AAGGAACT
* * *
80485832 CTT-TGAAAAGCTTCAGTTGATTTACAATCATGACCTTTTACTTACAGGATTTTACGAATCTAAC
379 -TTCTGAAAAGCTTCAGTTGACTTACAATCACGACATTTTACTTACAGGATTTTACGAATCTAAC
80485896 AGTCTGT
443 AGTCTGT
* * * *** * *
80485903 TGATTTACGATCACGACCTTCTACTTACGAGATTTTACGAATCTTGTGGTCTACTAATTTACGAC
1 TGATTTACGATCACGACCTTCTACTTAAGGGATTTTATGAATC-TGCAATCTACTGATTTACGAT
* * ** ** * * * * * *
80485968 CACAACCTTCTACTTATGAGATTTTATAAATCTTATGGTCCGCTTATTTACGATCACAACCTTCT
65 CACGACCTTCTACTTACGAGATTTTACGAATCTCGTAGTCCACTGATTTATGATCACAACATTAT
* ** ** * *** * * * * * *
80486033 AATTTTGA-GATTTTATGAATCTAGGTGTATTGAGGAAGAACTCAAATCTAACC-AGTCCATCCT
130 -ACTTAAATGATTTTACAAATATAGACATGTTAAGGAAGAACTCAAAACTGACCTATTTC--CCT
* * * * * * *
80486096 TTAAAGCAAGTTAGATGCTAGAGATTAAGAATAAAGGCATGTTAAGGAAGAACTCAAAACTGACC
192 TCAAAGCAAGTTAAATGCTAGAGATGATGAATATAGGCGTGTTGAGG-AGAACTCAAAACTGACC
* * * * * *
80486161 ATGAAAGAAGAAGGAT-GGAGGAATCAATTTTGTAACATTGCCTTTGT
256 ATAAAAGATGGATGATAGG-GGAATCAATTTTGTTACATTACCTTTGT
80486208 AAAACCCCAA
Statistics
Matches: 609, Mismatches: 117, Indels: 55
0.78 0.15 0.07
Matches are distributed among these distances:
447 28 0.05
448 42 0.07
449 7 0.01
450 32 0.05
451 395 0.65
452 61 0.10
453 20 0.03
454 1 0.00
456 23 0.04
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (449 bp):
TGATTTACGATCACGACCTTCTACTTAAGGGATTTTATGAATCTGCAATCTACTGATTTACGATC
ACGACCTTCTACTTACGAGATTTTACGAATCTCGTAGTCCACTGATTTATGATCACAACATTATA
CTTAAATGATTTTACAAATATAGACATGTTAAGGAAGAACTCAAAACTGACCTATTTCCCTTCAA
AGCAAGTTAAATGCTAGAGATGATGAATATAGGCGTGTTGAGGAGAACTCAAAACTGACCATAAA
AGATGGATGATAGGGGAATCAATTTTGTTACATTACCTTTGTGAGCTGAAACTAGTTTTCTTCAC
AATAAGTCTGAAATAAGGCTTGAAATGGATCAATCTCTCAAAAAAAAGGAACTTTCTGAAAAGCT
TCAGTTGACTTACAATCACGACATTTTACTTACAGGATTTTACGAATCTAACAGTCTGT
Found at i:80485963 original size:54 final size:54
Alignment explanation
Indices: 80485864--80486054 Score: 195
Period size: 54 Copynumber: 3.5 Consensus size: 54
80485854 TACAATCATG
* * ** * * *
80485864 ACCTTTTACTTAC-AGGATTTTACGAATCTAACAGTCTGTTGATTTACGATCACG
1 ACCTTCTACTTACGA-GATTTTACGAATCTTATGGTCTGCTAATTTACGATCACA
* * *
80485918 ACCTTCTACTTACGAGATTTTACGAATCTTGTGGTCTACTAATTTACGACCACA
1 ACCTTCTACTTACGAGATTTTACGAATCTTATGGTCTGCTAATTTACGATCACA
* ** * *
80485972 ACCTTCTACTTATGAGATTTTATAAATCTTATGGTCCGCTTATTTACGATCACA
1 ACCTTCTACTTACGAGATTTTACGAATCTTATGGTCTGCTAATTTACGATCACA
* ** *
80486026 ACCTTCTAATTTTGAGATTTTATGAATCT
1 ACCTTCTACTTACGAGATTTTACGAATCT
80486055 AGGTGTATTG
Statistics
Matches: 115, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
54 114 0.99
55 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (54 bp):
ACCTTCTACTTACGAGATTTTACGAATCTTATGGTCTGCTAATTTACGATCACA
Found at i:80489289 original size:54 final size:53
Alignment explanation
Indices: 80489206--80489380 Score: 154
Period size: 54 Copynumber: 3.2 Consensus size: 53
80489196 TACTTTTGGT
** * *
80489206 ATTTTACGAATCTCACGACCTGCTAATTTATGATGATAATCTTCTACTTATAAG
1 ATTTTACGAATCTCACGGTCTACTGATTTATGATGATAA-CTTCTACTTATAAG
* ** * * *
80489260 ATTTTACGAATCTCGCGGTCTACTGATTTACAATGA-AGACCTTTTACTTACAGG
1 ATTTTACGAATCTCACGGTCTACTGATTTATGATGATA-A-CTTCTACTTATAAG
** * * * *
80489314 ATTTTACGAATCTCTTGGTCCACTGATTTATGATCATGACTTTCTACTTATTAG
1 ATTTTACGAATCTCACGGTCTACTGATTTATGATGATAAC-TTCTACTTATAAG
*
80489368 ATTTTAAGAATCT
1 ATTTTACGAATCT
80489381 TGTGGCCCGT
Statistics
Matches: 95, Mismatches: 23, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
53 2 0.02
54 93 0.98
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (53 bp):
ATTTTACGAATCTCACGGTCTACTGATTTATGATGATAACTTCTACTTATAAG
Found at i:80489494 original size:54 final size:54
Alignment explanation
Indices: 80489246--80489522 Score: 241
Period size: 54 Copynumber: 5.1 Consensus size: 54
80489236 TGATGATAAT
* * * * * *
80489246 CTTCTACTTATAAGATTTTACGAATCTCGCGGTCTACTGATTTACAATGAAGAC
1 CTTCTACTTACAAGATTTTACGAATCTCGTGGTCTGCTGATTTACGATCACGAC
* * * ** * *
80489300 CTTTTACTTACAGGATTTTACGAATCTCTTGGTCCACTGATTTATGATCATGAC
1 CTTCTACTTACAAGATTTTACGAATCTCGTGGTCTGCTGATTTACGATCACGAC
* ** * * * * * * * *
80489354 TTTCTACTTATTAGATTTTAAGAATCTTGTGGCCCGTTGAATTACGATCACAAT
1 CTTCTACTTACAAGATTTTACGAATCTCGTGGTCTGCTGATTTACGATCACGAC
* * * * * *
80489408 TTTCTACTTACGAGATTTTATGGATCTCGTGGTTTGTTGATTTACGATCACGAC
1 CTTCTACTTACAAGATTTTACGAATCTCGTGGTCTGCTGATTTACGATCACGAC
* * *
80489462 CTTCTTCTTACAAGATTTTACGAATGTCGTGGTCTGCTGATTT-CTGGTCACGAC
1 CTTCTACTTACAAGATTTTACGAATCTCGTGGTCTGCTGATTTAC-GATCACGAC
80489516 CTTCTAC
1 CTTCTAC
80489523 CTATGTGATT
Statistics
Matches: 175, Mismatches: 47, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
53 1 0.01
54 174 0.99
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.40
Consensus pattern (54 bp):
CTTCTACTTACAAGATTTTACGAATCTCGTGGTCTGCTGATTTACGATCACGAC
Found at i:80490246 original size:54 final size:53
Alignment explanation
Indices: 80490183--80490388 Score: 156
Period size: 54 Copynumber: 3.8 Consensus size: 53
80490173 AAGCTTCAGT
80490183 TGATTTACAATCACGACCTCT-TACTTACAGGATTTTATGAATCTCAATGTTTGC
1 TGATTTACAATCACGACCTCTCTACTTACAGGATTTTATGAATCT--ATGTTTGC
* * ** *
80490237 TGATTTACAATGACAACCT-TCTACTTATGGGATTTTACGAATCT-TGTAATCTGC
1 TGATTTACAATCACGACCTCTCTACTTACAGGATTTTATGAATCTATGT--T-TGC
* * * *
80490291 TGATTTACAATCACGGCC-ATCTATTTAC-GGAATTTTATGGATCTAGTGTTTCGC
1 TGATTTACAATCACGACCTCTCTACTTACAGG-ATTTTATGAATCTA-TGTTT-GC
* * * * *
80490345 TAATTTA-AGATCAC-AACTTTCTATTTACAGGATTTTTTGAATCT
1 TGATTTACA-ATCACGACCTCTCTACTTACAGGATTTTATGAATCT
80490389 CACAATCTAC
Statistics
Matches: 122, Mismatches: 18, Indels: 24
0.74 0.11 0.15
Matches are distributed among these distances:
51 3 0.02
53 7 0.06
54 107 0.88
55 2 0.02
56 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (53 bp):
TGATTTACAATCACGACCTCTCTACTTACAGGATTTTATGAATCTATGTTTGC
Found at i:80490378 original size:108 final size:108
Alignment explanation
Indices: 80490183--80490443 Score: 246
Period size: 108 Copynumber: 2.4 Consensus size: 108
80490173 AAGCTTCAGT
*
80490183 TGATTTACAATCACGACCTCTTACTTACAGGATTTTATGAATCTCAATGTTTGCTGATTTACAAT
1 TGATTTACAATCACGACCTCTTACTTACAGGATTTTATGAATCTCAATGTTTGCTAATTTACAAT
* **
80490248 GACAACCTTCTACTTATGGGATTTTACGAATCTTGTAATCTGC
66 CACAACCTTCTACTTACAGGATTTTACGAATCTTGTAATCTGC
* * * *
80490291 TGATTTACAATCACGGCCATC-TATTTAC-GGAATTTTATGGATCT-AGTGTTTCGCTAATTTA-
1 TGATTTACAATCACGACC-TCTTACTTACAGG-ATTTTATGAATCTCAATGTTT-GCTAATTTAC
* * ** *** *
80490352 AGATCACAACTTTCTATTTACAGGATTTTTTGAATCTCACAATCTAC
63 A-ATCACAACCTTCTACTTACAGGATTTTACGAATCTTGTAATCTGC
* * * *
80490399 TGATTTACGATCATGACCT-TCTACTTAC-GAGATTCTACGAATCTC
1 TGATTTACAATCACGACCTCT-TACTTACAG-GATTTTATGAATCTC
80490444 GCAGTCTATT
Statistics
Matches: 122, Mismatches: 23, Indels: 15
0.76 0.14 0.09
Matches are distributed among these distances:
107 10 0.08
108 109 0.89
109 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (108 bp):
TGATTTACAATCACGACCTCTTACTTACAGGATTTTATGAATCTCAATGTTTGCTAATTTACAAT
CACAACCTTCTACTTACAGGATTTTACGAATCTTGTAATCTGC
Found at i:80490441 original size:54 final size:53
Alignment explanation
Indices: 80490383--80490495 Score: 127
Period size: 54 Copynumber: 2.1 Consensus size: 53
80490373 AGGATTTTTT
* * * *
80490383 GAATCTCACAATCTACTGATTTACGATCATGACCTTCTACTTACGAGATTCTAC
1 GAATCTCACAATCTACTAATTCACGATCACGACATTCTA-TTACGAGATTCTAC
* * * ** *
80490437 GAATCTCGCAGTCTATTAATTCACGATCACGACATTCTATTACTTGATTTTAC
1 GAATCTCACAATCTACTAATTCACGATCACGACATTCTATTACGAGATTCTAC
80490490 GAATCT
1 GAATCT
80490496 AGGCGTGTTA
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
53 17 0.35
54 32 0.65
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (53 bp):
GAATCTCACAATCTACTAATTCACGATCACGACATTCTATTACGAGATTCTAC
Found at i:80491158 original size:54 final size:54
Alignment explanation
Indices: 80490747--80491167 Score: 235
Period size: 54 Copynumber: 7.8 Consensus size: 54
80490737 GCTTTAGTTA
* * * **** * *
80490747 ATTTACAATCACGACATTT-TATTTACGGGATTTTACAAATCTTAAAGTCTACTA
1 ATTTACGATCACGAC-TTTCTACTTACGGAATTTTACAAATCTCGTGGTCCACTG
* ** * * * * * *
80490801 ATTTATGATGGCGACCTTCTACTTACGGGATTTTACGAATATCGAGGTCTACTG
1 ATTTACGATCACGACTTTCTACTTACGGAATTTTACAAATCTCGTGGTCCACTG
* * * * * * * * * *
80490855 ATTTACTATTAAGACCTTCTACTGACTGG-ATTTTACGAATATAGTAGTCTACTG
1 ATTTACGATCACGACTTTCTACTTAC-GGAATTTTACAAATCTCGTGGTCCACTG
* * * * * * *
80490909 ATTTACCATCACAACTTTCTACTTACGGGATTTCACTAATCTCATGGTCCACAG
1 ATTTACGATCACGACTTTCTACTTACGGAATTTTACAAATCTCGTGGTCCACTG
* * * * *
80490963 ATTTACGATCATGACCTTT-TACTTAAGGAATTTTACAAATCTCGTGATCCGCTA
1 ATTTACGATCACGA-CTTTCTACTTACGGAATTTTACAAATCTCGTGGTCCACTG
* * * * * * *
80491017 ATTTACAATCACGACCTTT-TACTTA-TGAGATTTTGCAAACCTCGCT-ATCCATTC
1 ATTTACGATCACGA-CTTTCTACTTACGGA-ATTTTACAAATCTCG-TGGTCCACTG
* * * *
80491071 ATTTACGATCATGACATTCTATTTATAGG-ATTTTACAAATCTCGTGGTCCACTG
1 ATTTACGATCACGACTTTCTACTTA-CGGAATTTTACAAATCTCGTGGTCCACTG
* * *
80491125 ATTTACGATCACGACTTTCTACTGACGTAATTTTGACGAATCT
1 ATTTACGATCACGACTTTCTACTTACGGAATTTT-ACAAATCT
80491168 AGTCATTTTG
Statistics
Matches: 283, Mismatches: 72, Indels: 23
0.75 0.19 0.06
Matches are distributed among these distances:
53 11 0.04
54 257 0.91
55 14 0.05
56 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (54 bp):
ATTTACGATCACGACTTTCTACTTACGGAATTTTACAAATCTCGTGGTCCACTG
Found at i:80491158 original size:108 final size:108
Alignment explanation
Indices: 80490963--80491159 Score: 265
Period size: 108 Copynumber: 1.8 Consensus size: 108
80490953 TGGTCCACAG
* * *
80490963 ATTTACGATCATGACCTTTTACTTAAGGAATTTTACAAATCTCGTGATCCGCTAATTTACAATCA
1 ATTTACGATCATGACATTCTACTTAAGGAATTTTACAAATCTCGTGATCCACTAATTTACAATCA
* *
80491028 CGACCTTTTACTTATGAGATTTTGCAAACCTCGCTATCCATTC
66 CGACCTTTTACTGACGAGATTTTGCAAACCTCGCTATCCATTC
* * * *
80491071 ATTTACGATCATGACATTCTATTTATAGG-ATTTTACAAATCTCGTGGTCCACTGATTTACGATC
1 ATTTACGATCATGACATTCTACTTA-AGGAATTTTACAAATCTCGTGATCCACTAATTTACAATC
80491135 ACGA-CTTTCTACTGACGTA-ATTTTG
65 ACGACCTTT-TACTGACG-AGATTTTG
80491160 ACGAATCTAG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
107 4 0.05
108 69 0.90
109 4 0.05
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (108 bp):
ATTTACGATCATGACATTCTACTTAAGGAATTTTACAAATCTCGTGATCCACTAATTTACAATCA
CGACCTTTTACTGACGAGATTTTGCAAACCTCGCTATCCATTC
Found at i:80491497 original size:54 final size:54
Alignment explanation
Indices: 80491439--80491571 Score: 140
Period size: 54 Copynumber: 2.5 Consensus size: 54
80491429 CACGGCATAT
* * ** *
80491439 TACTTACGGGATTTTATGAATCTCGAGGTTTGCTGATTTATGATCACGACCTTC
1 TACTTACGGGATTTTATGAATCTCGAGCTTCGCTGATTTACAATCACAACCTTC
*** * * *
80491493 TACTTACCATATTTTATGAATCCCGTGCTTCGTTGATTTACAATCACAACCTTC
1 TACTTACGGGATTTTATGAATCTCGAGCTTCGCTGATTTACAATCACAACCTTC
* **
80491547 TACTTATGGGATTTTACAAATCTCG
1 TACTTACGGGATTTTATGAATCTCG
80491572 TAGCCCGCTA
Statistics
Matches: 61, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
54 61 1.00
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (54 bp):
TACTTACGGGATTTTATGAATCTCGAGCTTCGCTGATTTACAATCACAACCTTC
Found at i:80491869 original size:510 final size:506
Alignment explanation
Indices: 80490907--80492532 Score: 1705
Period size: 510 Copynumber: 3.2 Consensus size: 506
80490897 AGTAGTCTAC
* * * * * *
80490907 TGATTTACCATCACAAC-TTTCTACTTACGGGATTTCACT-AATCTC-ATGGTCCACAGATTTAC
1 TGATTTACAATCACGACATTT-TACTTACGGGATTTTA-TGAATCTCGA-GGTTCGCTGATTTAC
* * ** * * **** *
80490969 GATCATGACCTTTTACTTAAGGA-ATTTTACAAATCTCGTGATCCGCTAATTTACAATCACGACC
63 GATCACGACCTTCTACTT-ACCATATTTTACAAATCCCGTGCTGAATTGATTTACAATCACGACC
* * * ** * * *
80491033 TTTTACTTATGAGATTTTGCAAACCTCGCTA-TCCATTCATTTACGATCATGACATTCTATTTAT
127 TTCTACTTATGAGATTTTACAAATCTCG-TAGTCCGCTAATTTACAATCATGACATTCTACTTAT
* * * * *
80491097 AGGATTTTACAAATCTCGTGGTCCACTGATTTACGATCACGACTTTCTACTGACGTAATTTTGAC
191 AGGATTTTACAAATCTC--GGTCCGCTAATTTACGATCACGACCTTCTACTAACGTGATTTT-AC
* * * * * * ** *
80491162 GAATCTAGTCATTTTGAAGAAAAACTAAAAATTGACATCTCAT-CTTTTCAGAGCAAGTTAGATG
253 GAATCTAGGCGTGTTGAAGAAGAACTAAAAATTGACCTTTC-TGCCCTTCAAAGCAAGTTAGATG
* * *
80491226 CTAGAGATGATTAATATAGGCGAGTTGAGGAAAAACTCAAAACTGACCTTAAAAGAAAGAGGATA
317 CTAGAGATGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAA-A-GATA
* **
80491291 GAGGAATTAAATTTGTTACATTACCTTTGTGAGGCTAAAGCTAGTTCTCTTCACCATACGCCTGA
380 GAGGAATTAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAGTTCTCTTCACCATACATCTGA
* * *
80491356 AATGAGGATTGAAATGGTTCGATCTACTTAGAAAAACAAAGAACTTTCTTAAGAGCTT-ATGT
445 AATGAGGCTTGAAATGGATCGATCTACTTAGAAAAACAAGGAACTTTCTTAAGAGCTTCA-GT
* * * *
80491418 TGATTTACAATCACGGCATATTACTTACGGGATTTTATGAATCTCGAGGTTTGCTGATTTATGAT
1 TGATTTACAATCACGACATTTTACTTACGGGATTTTATGAATCTCGAGGTTCGCTGATTTACGAT
** *** *
80491483 CACGACCTTCTACTTACCATATTTTATGAATCCCGTGCTTCGTTGATTTACAATCACAACCTTCT
66 CACGACCTTCTACTTACCATATTTTACAAATCCCGTGCTGAATTGATTTACAATCACGACCTTCT
* * * * * *
80491548 ACTTATGGGATTTTACAAATCTCGTAGCCCGCTAATTTTCAATCATGACATTCAACTTACAAGAT
131 ACTTATGAGATTTTACAAATCTCGTAGTCCGCTAATTTACAATCATGACATTCTACTTATAGGAT
* *
80491613 TTTACAAATCATACGGTCCGCTAATTTATGATCACGACCTTCTACTAACATGATTTTACGAATCT
196 TTTACAAATC-T-CGGTCCGCTAATTTACGATCACGACCTTCTACTAACGTGATTTTACGAATCT
*
80491678 AGGCGTGTTGAAGAAGAACTAAAAACTGACCTTTCTGCCCTTCAAAGCAAGTTAGATGCTAGAGA
259 AGGCGTGTTGAAGAAGAACTAAAAATTGACCTTTCTGCCCTTCAAAGCAAGTTAGATGCTAGAGA
* * *
80491743 TGATTAATATAAGCGTGTTGAGGAAGAACTCAAAACTAACCTTGAAAGAATTAAGTTAGAGGAAT
324 TGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAA--AAGATAGAGGAAT
* * * *
80491808 CAAATTTGTTACATTGCCTTTGTGAGGCTGAAGCTAGTTCTCTTCACCATATATTTGAAATGAGG
387 TAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAGTTCTCTTCACCATACATCTGAAATGAGG
* * * * * * *
80491873 CTTGAAATAGATCGATTTGCTCAGAAAAATAAGGAACTTACTTAAAAGCTTCAGT
452 CTTGAAATGGATCGATCTACTTAGAAAAACAAGGAACTTTCTTAAGAGCTTCAGT
* * * * * * *
80491928 TGATTTACAATCACGACCTTTTACTTATGTG-TTATTATAAATCTTGTGGTCCGCTG-TTCTACG
1 TGATTTACAATCACGACATTTTACTTACGGGATT-TTATGAATCTCGAGGTTCGCTGATT-TACG
* * * * * ** * * *
80491991 ATTACAACCTTCAACTTACGAGATTTTACAAATCTTGTGGTGAATTGATTTGCAATCATGACCTT
64 ATCACGACCTTCTACTTACCATATTTTACAAATCCCGTGCTGAATTGATTTACAATCACGACCTT
* * * * * * * * **
80492056 CTACTTTATCA-ATTTTACGAATCTTGTGGTCAGCTGATTCACAATCATTACCGTCTACTTATAG
129 CTAC-TTATGAGATTTTACAAATCTCGTAGTCCGCTAATTTACAATCATGACATTCTACTTATAG
* * * * * *
80492120 GATTTTACGAATCTTGCAGTCCGCTAATTTACAATCATGACCTTCTACTTACGGGATTTTACGAA
193 GATTTTACAAATC-T-CGGTCCGCTAATTTACGATCACGACCTTCTACTAACGTGATTTTACGAA
* * * * *
80492185 TCTAGGCGTGTTGAAGAAGAACTAAAAATTTACCTTTTTGGCCTTTAAAGCAAGTTAGATGCTAC
256 TCTAGGCGTGTTGAAGAAGAACTAAAAATTGACCTTTCTGCCCTTCAAAGCAAGTTAGATGCTAG
* * * *
80492250 AGATGGTTAACATAGGCATGTTGAGGAAGAACTCAAAACTGACCTTGAAA-AAAGAGAATAAAGG
321 AGATGATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAA-AG-ATAGAGG
* * *
80492314 AATTAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAATTCTTTTCACCAAACATCTGAAATG
384 AATTAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAGTTCTCTTCACCATACATCTGAAATG
* * *
80492379 AGGCTTGACATGGATCGATCTATTTAGTAAAACAAGGAACTTTCTTAAGAGCTTCAGT
449 AGGCTTGAAATGGATCGATCTACTTAGAAAAACAAGGAACTTTCTTAAGAGCTTCAGT
** * * *
80492437 TGATTTACAATCATAACTTTTTACTTACGGGATTTTAGGAATCTC-ACAGTTCG-TAGATTTACG
1 TGATTTACAATCACGACATTTTACTTACGGGATTTTATGAATCTCGA-GGTTCGCT-GATTTACG
*
80492500 ATCACGACCTTCTACTTA-CATGATTTTTCAAAT
64 ATCACGACCTTCTACTTACCAT-ATTTTACAAAT
80492533 ATAAGCGTGT
Statistics
Matches: 918, Mismatches: 176, Indels: 44
0.81 0.15 0.04
Matches are distributed among these distances:
507 1 0.00
508 4 0.00
509 186 0.20
510 523 0.57
511 198 0.22
512 5 0.01
513 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (506 bp):
TGATTTACAATCACGACATTTTACTTACGGGATTTTATGAATCTCGAGGTTCGCTGATTTACGAT
CACGACCTTCTACTTACCATATTTTACAAATCCCGTGCTGAATTGATTTACAATCACGACCTTCT
ACTTATGAGATTTTACAAATCTCGTAGTCCGCTAATTTACAATCATGACATTCTACTTATAGGAT
TTTACAAATCTCGGTCCGCTAATTTACGATCACGACCTTCTACTAACGTGATTTTACGAATCTAG
GCGTGTTGAAGAAGAACTAAAAATTGACCTTTCTGCCCTTCAAAGCAAGTTAGATGCTAGAGATG
ATTAATATAGGCGTGTTGAGGAAGAACTCAAAACTGACCTTGAAAGAAAAGATAGAGGAATTAAA
TTTGTTACATTGCCTTTGTGAGGCTAAAGCTAGTTCTCTTCACCATACATCTGAAATGAGGCTTG
AAATGGATCGATCTACTTAGAAAAACAAGGAACTTTCTTAAGAGCTTCAGT
Found at i:80492094 original size:54 final size:54
Alignment explanation
Indices: 80492011--80492187 Score: 180
Period size: 54 Copynumber: 3.3 Consensus size: 54
80492001 TCAACTTACG
* * ** *
80492011 AGATTTTACAAATCTTGTGGTGAATTGATTTGCAATCATGACCTTCTACTTTAT
1 AGATTTTACGAATCTTGTGGTCAGCTGATTTACAATCATGACCTTCTACTTTAT
* * *
80492065 CA-ATTTTACGAATCTTGTGGTCAGCTGATTCACAATCATTACCGTCTAC-TTAT
1 -AGATTTTACGAATCTTGTGGTCAGCTGATTTACAATCATGACCTTCTACTTTAT
** * * *
80492118 AGGATTTTACGAATCTTGCAGTCCGCTAATTTACAATCATGACCTTCTAC-TTACG
1 A-GATTTTACGAATCTTGTGGTCAGCTGATTTACAATCATGACCTTCTACTTTA-T
*
80492173 GGATTTTACGAATCT
1 AGATTTTACGAATCT
80492188 AGGCGTGTTG
Statistics
Matches: 102, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
52 1 0.01
53 4 0.04
54 96 0.94
55 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (54 bp):
AGATTTTACGAATCTTGTGGTCAGCTGATTTACAATCATGACCTTCTACTTTAT
Found at i:80492771 original size:348 final size:346
Alignment explanation
Indices: 80492119--80492826 Score: 875
Period size: 347 Copynumber: 2.0 Consensus size: 346
80492109 TCTACTTATA
** * * *
80492119 GGATTTTACGAATCTTGCAGTCCGCTAATTTACAATCATGACCTTCTACTTACGGGATTTTACGA
1 GGATTTTACGAATCTCACAGTCCGCTAATTTACAATCACGACCTTCTACTTACAGGATTTTACAA
* * *** * * * *
80492184 ATCTAGGCGTGTTGAAGAAGAACTAAAAATTTACCTTTTTGGCCTTTAAAGCAAGTTAGATGCTA
66 ATATAAGCGTGTTGAAGAAGAACTAAAAAGGGACCTATCTGCCCTTCAAAGCAAGTTAGATGCTA
*
80492249 CAGATGGTTAACATAGGCATGTTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGAGAATAAAGG
131 CAGATAGTTAACATAGGCATGTTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGAGAATAAAGG
* * *
80492314 AATTAAATTTGTTACATTGCCTTTGTGAGGCTAAAGCTAATTCTTTTCACCAAACATCTGAAATG
196 AATCAAATTTGTGACATTGCCTTTGTGAGGCTAAAGCTAATTCTCTTCACCAAACATCTGAAATG
* * * * * * *
80492379 AGGCTTGACATGGATCGATCTATTTAGTAAAACAAGGAACTTTCTTAAGAGCTTCAGTTGATTTA
261 AGGCTCGAAATGGATCGATCTATTCAGAAAAACAAGGAACTTTCTGAAAAGCTTCAGTAGATTTA
*
80492444 CAATCATAACTTTTTACTTACG
326 CAATCACAAC-TTTTACTTACG
* * * * *
80492466 GGATTTTAGGAATCTCACAGTTCG-TAGATTTACGATCACGACCTTCTACTTACATGATTTTTCA
1 GGATTTTACGAATCTCACAGTCCGCTA-ATTTACAATCACGACCTTCTACTTACAGGATTTTACA
* * * *
80492530 AATATAAGCGTGTTGAAGAAGAACTCAAAAGGGACCTATCTGCCCTTCAGAGCATGTTAGTTGCT
65 AATATAAGCGTGTTGAAGAAGAACTAAAAAGGGACCTATCTGCCCTTCAAAGCAAGTTAGATGCT
* * * * *
80492595 AGAGATAGTTAATATAGGCGTGTTGAGGAAGAACTTAAAA-TAGACCTT-AAAAGAATGAGGATA
130 ACAGATAGTTAACATAGGCATGTTGAGGAAGAACTCAAAACT-GACCTTGAAAA-AA-GAGAATA
* * * * * *
80492658 AAGGAATCAATTTTGTGGCATTGCCTTTGTGAGGCTGAAGCTAGTTCTCTTCACCATACGTCTGA
192 AAGGAATCAAATTTGTGACATTGCCTTTGTGAGGCTAAAGCTAATTCTCTTCACCAAACATCTGA
* * *
80492723 AATGAGGCTCGAAATGGATTGATCT-TATCAGAAAAACAAGGGACTTTCTGAAAAGCTTTAGTAG
257 AATGAGGCTCGAAATGGATCGATCTAT-TCAGAAAAACAAGGAACTTTCTGAAAAGCTTCAGTAG
80492787 ATTTACAATCACAACTTTTACTTACG
321 ATTTACAATCACAACTTTTACTTACG
* *
80492813 GGACTTTACAAATC
1 GGATTTTACGAATC
80492827 ACGTGGTCTA
Statistics
Matches: 304, Mismatches: 52, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
346 7 0.02
347 169 0.56
348 128 0.42
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.31
Consensus pattern (346 bp):
GGATTTTACGAATCTCACAGTCCGCTAATTTACAATCACGACCTTCTACTTACAGGATTTTACAA
ATATAAGCGTGTTGAAGAAGAACTAAAAAGGGACCTATCTGCCCTTCAAAGCAAGTTAGATGCTA
CAGATAGTTAACATAGGCATGTTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGAGAATAAAGG
AATCAAATTTGTGACATTGCCTTTGTGAGGCTAAAGCTAATTCTCTTCACCAAACATCTGAAATG
AGGCTCGAAATGGATCGATCTATTCAGAAAAACAAGGAACTTTCTGAAAAGCTTCAGTAGATTTA
CAATCACAACTTTTACTTACG
Found at i:80493320 original size:54 final size:54
Alignment explanation
Indices: 80493259--80493383 Score: 135
Period size: 54 Copynumber: 2.3 Consensus size: 54
80493249 TTTTACTTCT
* *
80493259 GAGATTTTACGAATTTC-ACGGTACGCTGATTTACGATGACGACGTTCTACTTAC
1 GAGATTTTACGAATCTCTAAGGTA-GCTGATTTACGATGACGACGTTCTACTTAC
* * * * * * *
80493313 GATATTTTACAAAACTCTAAGTTAGCTGATTTACGATGATGACTTTTTACTTAC
1 GAGATTTTACGAATCTCTAAGGTAGCTGATTTACGATGACGACGTTCTACTTAC
* *
80493367 TAGATTATACGAATCTC
1 GAGATTTTACGAATCTC
80493384 ATGGCTCACT
Statistics
Matches: 56, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
54 52 0.93
55 4 0.07
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.37
Consensus pattern (54 bp):
GAGATTTTACGAATCTCTAAGGTAGCTGATTTACGATGACGACGTTCTACTTAC
Found at i:80493547 original size:54 final size:54
Alignment explanation
Indices: 80493457--80493584 Score: 143
Period size: 54 Copynumber: 2.4 Consensus size: 54
80493447 GACATTATAA
* * *
80493457 TTAAGGGATTTTATGAATCTCGCAATCCGTTAATTTAAGATCACAACCTTTTAC
1 TTAAGGGATTTTACGAATCTCGCAATCCGCTAATTTAAGATCACAACCTTCTAC
* * * * *
80493511 TTAAGGGATTTTACGAATCTCG-AGGTCCGCTGATTTACGATCGCAATCTTCTAC
1 TTAAGGGATTTTACGAATCTCGCA-ATCCGCTAATTTAAGATCACAACCTTCTAC
*
80493565 TTATA-GAATTTTACGAATCT
1 TTA-AGGGATTTTACGAATCT
80493585 AGGGGTGTTG
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.02
54 61 0.97
55 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.37
Consensus pattern (54 bp):
TTAAGGGATTTTACGAATCTCGCAATCCGCTAATTTAAGATCACAACCTTCTAC
Found at i:80494264 original size:54 final size:54
Alignment explanation
Indices: 80494205--80494494 Score: 316
Period size: 54 Copynumber: 5.4 Consensus size: 54
80494195 GAGCTTCAGT
* * * * ** **
80494205 TGATTTACAATCACAACCTTTTACTTACAGGATTTTTCGAATCTCAAGGTCTAC
1 TGATTTACGATCACGACCTTTTACTTACAGGATTTTACAAATCTCGTGGTCCGC
*
80494259 TGATTTACGATCACGACCTTGTACTTACTA-GATTTTACAAATCTCGTGGTCCGC
1 TGATTTACGATCACGACCTTTTACTTAC-AGGATTTTACAAATCTCGTGGTCCGC
* * * *
80494313 TGATTTATGATCACAACCTCTTACTTACAGGATTTTACAAATCTCGTGGTCCAC
1 TGATTTACGATCACGACCTTTTACTTACAGGATTTTACAAATCTCGTGGTCCGC
* * * *
80494367 -CAGTTTACGATCATGACCTTTTACTTA-AGGAATTTTACAAATCTCGTAGTCTGC
1 TGA-TTTACGATCACGACCTTTTACTTACAGG-ATTTTACAAATCTCGTGGTCCGC
* * * * * *
80494421 TAATTTATGATCACGACCTTTTATTTATAGGATTTTACGAATCTCCTGGTCCGC
1 TGATTTACGATCACGACCTTTTACTTACAGGATTTTACAAATCTCGTGGTCCGC
*
80494475 TGATTTACTATCACGACCTT
1 TGATTTACGATCACGACCTT
80494495 CTAATGATGT
Statistics
Matches: 197, Mismatches: 33, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
53 5 0.03
54 187 0.95
55 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (54 bp):
TGATTTACGATCACGACCTTTTACTTACAGGATTTTACAAATCTCGTGGTCCGC
Found at i:80494999 original size:54 final size:52
Alignment explanation
Indices: 80494941--80495185 Score: 187
Period size: 54 Copynumber: 4.6 Consensus size: 52
80494931 AATTCATGAC
* *
80494941 CACGATCTTCTACTTACGGGATTTTACT-AATCTTGCGGTGCACTGATTTACTAT
1 CACGACCTTCTACTTACGGGATTTTA-TGAATCTCGCGGT-CACTGATTTA-TAT
* ** * *
80494995 CACGACCTTCTACTTAAGAAATTTTATGAATCTCGCGGTCCGCTGATTTAAGAT
1 CACGACCTTCTACTTACGGGATTTTATGAATCTCGCGGT-CACTGATTT-ATAT
* * * *
80495049 TATGACCTTCTACTTATGGGATTTTACT-AATCT--C-AT-ATCTGATTTATGAT
1 CACGACCTTCTACTTACGGGATTTTA-TGAATCTCGCGGTCA-CTGATTTAT-AT
* ** *
80495099 CATGACCTTCTACTTACGGGATTTTATGAATCTCGCGGTTCGTTGCTTTATGAT
1 CACGACCTTCTACTTACGGGATTTTATGAATCTCGCGG-TCACTGATTTAT-AT
* * **
80495153 CACAACCTTCTACTAACGTAATTTTATGAATCT
1 CACGACCTTCTACTTACGGGATTTTATGAATCT
80495186 AGGCGTGTTA
Statistics
Matches: 153, Mismatches: 27, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
49 2 0.01
50 38 0.25
51 1 0.01
52 2 0.01
53 1 0.01
54 107 0.70
55 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (52 bp):
CACGACCTTCTACTTACGGGATTTTATGAATCTCGCGGTCACTGATTTATAT
Found at i:80494999 original size:563 final size:564
Alignment explanation
Indices: 80493942--80495044 Score: 1188
Period size: 563 Copynumber: 2.0 Consensus size: 564
80493932 TACTTACATG
** * * * * **
80493942 ATTTTATGAATCTATTCGTGTTCAAGAATAACTCAAAACTAACCACTCTACCATTCAGATTAAGT
1 ATTTTATGAATCTAGGCGTGTTCAAAAAGAAATAAAAACTAACCACTCTACCATTCAGAGCAAGT
* * *
80494007 TAGATGTTAGAGATTATGCATATAGCCATGTTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGA
66 TAGATGCTAGAGATGATGAATATAGCCATGTTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGA
* * * *
80494072 AGAATAAATAAATCAATTTTTTTTACAATTCCTTCGTGTGGCTAAAGCTAGTTCTCTTCACCATA
131 AGAATAAAGAAATCAATATTTGTTACAATTCCTTCGTGAGGCTAAAGCTAGTTCTCTTCACCATA
* * * *
80494137 CTTCTGAATGAAGCTTGAAATAGATTGATCTTCTCAGAAAAACAAGTAATTTTCTGAAGAGCTTC
196 CGTCTGAATGAAGCTTGAAATAGATTGATCTTCTAAAAAAAACAAGTAATTTTCTGAAAAGCTTC
* *
80494202 AGTTGATTTACAATCACAACCTTTTACTTACAGGATTTTTCGAATCTCAAGGTCTACTGATTTAC
261 AGTTGATTTACAATCACAACCTTTTACTTACAGGATTTTACGAATCTCAAGGTCTACTAATTTAC
** **** *
80494267 GATCACGACCTTGTACTTACTAGATTTTACAAATCTCGTGGTCCGCTGATTTATGATCACAACCT
326 GATCACGACCTTCAACTTACTAGATTTTACAAATCTCGCAAACCGCTAATTTATGATCACAACCT
* * * * * * *
80494332 CTTACTTACAGGATTTTACAAATCTCGTGGTCCACCAGTTTACGATCATGACCTTTTACTTAAGG
391 CTTACTTACAGGATTTTACAAATCTCATAGTCCACCAATTCACGACCACGACCTTCTACTTAAGG
* * * * *
80494397 AATTTTACAAATCTCGTAGTCTGCTAATTTATGATCACGACCTTTTATTTATAG-GATTTTACGA
456 AATTTTACAAATCTCGCAGTCTACTAATTTATGATCACGACCTTCTACTTA-AGAAATTTTACGA
80494461 ATCTC-CTGGTCCGCTGATTTACTATCACGACCTTCTAATGATGTA
520 ATCTCGC-GGTCCGCTGATTTACTATCACGACCTTCTAATGATGTA
* * * * *
80494506 ATTTTATGAATCTAGGCGTGTTGAAAAAGAAATAAAAATTGACCTCTCTACCCTTCAGAGCAAGT
1 ATTTTATGAATCTAGGCGTGTTCAAAAAGAAATAAAAACTAACCACTCTACCATTCAGAGCAAGT
* * * * ** *
80494571 TAGATGCTAGAGATGATTAATATAGGCATGTTGAGGAAGAACTCAAAGCTGATCTTGAAGGAAGG
66 TAGATGCTAGAGATGATGAATATAGCCATGTTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGA
* * * * * * *
80494636 AGATTAGAGGAATTAA-ATTTGTTAC-CTTGCCTTTGTGAGGCTGAAGCTAGTTCTCTTCACCAT
131 AGAATAAAGAAATCAATATTTGTTACAATT-CCTTCGTGAGGCTAAAGCTAGTTCTCTTCACCAT
* * * * * *
80494699 ACGTCTGAAATGAGGCTTGAAATGGATTG-TTTTGCTAAAAAAAATAGGTACTTTT-TGAAAAGC
195 ACGTCTG-AATGAAGCTTGAAATAGATTGATCTT-CTAAAAAAAACAAGTAATTTTCTGAAAAGC
* * * * * * *
80494762 TTCAGTTGATTTACAATCACGACCTTTTATTTA-TGGCTTATTACGAATCTCGAGGTTTGCTAAT
258 TTCAGTTGATTTACAATCACAACCTTTTACTTACAGGATT-TTACGAATCTCAAGGTCTACTAAT
* * *
80494826 TTACGATGACGACCTTCAACTTA-TGGGATTTTACAAATCTCGCAAACTGCTAATTTATGATCA-
322 TTACGATCACGACCTTCAACTTACT-AGATTTTACAAATCTCGCAAACCGCTAATTTATGATCAC
* ** ** * * * *
80494889 AGGCCT-TCTACTT-TTGAGATTTTATGAATCTCATAGTCCGCTAATTCATGACCACGATCTTCT
386 A-ACCTCT-TACTTACAG-GATTTTACAAATCTCATAGTCCACCAATTCACGACCACGACCTTCT
* * * * * *
80494952 ACTTACGGGATTTTACTAATCTTGCGGTGC-ACTGATTTACT-ATCACGACCTTCTACTTAAGAA
448 ACTTAAGGAATTTTACAAATCTCGCAGT-CTACTAATTTA-TGATCACGACCTTCTACTTAAGAA
*
80495015 ATTTTATGAATCTCGCGGTCCGCTGATTTA
511 ATTTTACGAATCTCGCGGTCCGCTGATTTA
80495045 AGATTATGAC
Statistics
Matches: 436, Mismatches: 91, Indels: 25
0.79 0.16 0.05
Matches are distributed among these distances:
562 12 0.03
563 268 0.61
564 156 0.36
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.35
Consensus pattern (564 bp):
ATTTTATGAATCTAGGCGTGTTCAAAAAGAAATAAAAACTAACCACTCTACCATTCAGAGCAAGT
TAGATGCTAGAGATGATGAATATAGCCATGTTGAGGAAGAACTCAAAACTGACCTTGAAAAAAGA
AGAATAAAGAAATCAATATTTGTTACAATTCCTTCGTGAGGCTAAAGCTAGTTCTCTTCACCATA
CGTCTGAATGAAGCTTGAAATAGATTGATCTTCTAAAAAAAACAAGTAATTTTCTGAAAAGCTTC
AGTTGATTTACAATCACAACCTTTTACTTACAGGATTTTACGAATCTCAAGGTCTACTAATTTAC
GATCACGACCTTCAACTTACTAGATTTTACAAATCTCGCAAACCGCTAATTTATGATCACAACCT
CTTACTTACAGGATTTTACAAATCTCATAGTCCACCAATTCACGACCACGACCTTCTACTTAAGG
AATTTTACAAATCTCGCAGTCTACTAATTTATGATCACGACCTTCTACTTAAGAAATTTTACGAA
TCTCGCGGTCCGCTGATTTACTATCACGACCTTCTAATGATGTA
Found at i:80495112 original size:50 final size:50
Alignment explanation
Indices: 80495037--80495132 Score: 149
Period size: 50 Copynumber: 1.9 Consensus size: 50
80495027 TCGCGGTCCG
* *
80495037 CTGATTTAAGATTATGACCTTCTACTTATGGGATTTTACT-AATCTCATAT
1 CTGATTTAAGATCATGACCTTCTACTTACGGGATTTTA-TGAATCTCATAT
*
80495087 CTGATTTATGATCATGACCTTCTACTTACGGGATTTTATGAATCTC
1 CTGATTTAAGATCATGACCTTCTACTTACGGGATTTTATGAATCTC
80495133 GCGGTTCGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
49 1 0.02
50 41 0.98
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.43
Consensus pattern (50 bp):
CTGATTTAAGATCATGACCTTCTACTTACGGGATTTTATGAATCTCATAT
Found at i:80495185 original size:104 final size:104
Alignment explanation
Indices: 80494983--80495178 Score: 241
Period size: 104 Copynumber: 1.9 Consensus size: 104
80494973 TTGCGGTGCA
80494983 CTGATTTACTATCACGACCTTCTACTTAAGAAATTTTATGAATCTCGCGGTCCGCTGATTTAAGA
1 CTGATTTACTATCACGACCTTCTACTTAAGAAATTTTATGAATCTCGCGGTCCGCTGATTTAAGA
* ** * * *
80495048 TTATGACCTTCTACTTATGGGATTTTACTAATCTCATAT
66 TCACAACCTTCTACTAACGGAATTTTACTAATCTCATAT
* * ** * * * *
80495087 CTGATTTA-TGATCATGACCTTCTACTTACGGGATTTTATGAATCTCGCGGTTCGTTGCTTTATG
1 CTGATTTACT-ATCACGACCTTCTACTTAAGAAATTTTATGAATCTCGCGGTCCGCTGATTTAAG
*
80495151 ATCACAACCTTCTACTAACGTAATTTTA
65 ATCACAACCTTCTACTAACGGAATTTTA
80495179 TGAATCTAGG
Statistics
Matches: 76, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
103 1 0.01
104 75 0.99
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (104 bp):
CTGATTTACTATCACGACCTTCTACTTAAGAAATTTTATGAATCTCGCGGTCCGCTGATTTAAGA
TCACAACCTTCTACTAACGGAATTTTACTAATCTCATAT
Found at i:80498574 original size:33 final size:33
Alignment explanation
Indices: 80498536--80498600 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
80498526 TGGCAAAGTG
* *
80498536 TTAAATG-TAAGACCATAGCCTAGGTTATGGCAT
1 TTAAATGAAAAGACCATA-ACTAGGTTATGGCAT
80498569 TTAAATGAAAAGACCATAACTAGGTTATGGCA
1 TTAAATGAAAAGACCATAACTAGGTTATGGCA
80498601 CCGTGAACGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 20 0.69
34 9 0.31
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (33 bp):
TTAAATGAAAAGACCATAACTAGGTTATGGCAT
Found at i:80500425 original size:54 final size:54
Alignment explanation
Indices: 80500351--80500471 Score: 152
Period size: 54 Copynumber: 2.2 Consensus size: 54
80500341 ATTTATAATC
** * * * *
80500351 ACGACCTTTTACTTTTAGGATTTTACGAATCTCACGATCTGTTGATTTACGATG
1 ACGACCTTTTACTTACAGGATTTTACGAAACTCACAATCAGCTGATTTACGATG
* * * *
80500405 ATGACCTTCTACTTACAGGATTTTACGAAACTCTCAATCAGCTGATTTATGATG
1 ACGACCTTTTACTTACAGGATTTTACGAAACTCACAATCAGCTGATTTACGATG
80500459 ACGACCTTTTACT
1 ACGACCTTTTACT
80500472 AGATTATACG
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (54 bp):
ACGACCTTTTACTTACAGGATTTTACGAAACTCACAATCAGCTGATTTACGATG
Found at i:80501385 original size:54 final size:54
Alignment explanation
Indices: 80501300--80501754 Score: 394
Period size: 54 Copynumber: 8.4 Consensus size: 54
80501290 AGAGCTGCAG
* * * * *
80501300 TTGATTTACAATCACGACATTTTAGTTACAGGATTTTATGAATCTCATGGTCCA
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
* * * *
80501354 TTGATTTACGATCATGACCTTCTACTTACAGGATTTTACGAATCTCGCGATCCA
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
* * * * ** **
80501408 TTGATTTACGATCACAACCTTCTATTTATAGGATTTTACGAATCTCGTGGTCTG
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
* * * * * * * *
80501462 TTGATTTACGATCACAACTTTCTACTTACGGGGTTTTATTAATCTCGCGATCCT
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
* * ** * * *
80501516 TTGATTTACGATCACGACCTTTTACTTACTGGATTTTAAAAATTTCATGGGCCA
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
* * * *
80501570 TTTATTTACAATCACGACATTCTACTTAC-GAGATTTTATGAATCTCACGGTTCA
1 TTGATTTACGATCACGACCTTCTACTTACAG-GATTTTATGAATCTCACGGTCCA
* **
80501624 TTGATTTACGATCACGACCTTCTACTTACGGGATTTTATGAATCT-AGCGGTCTG
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCA-CGGTCCA
* * ** * * ** *
80501678 CTGATTTACAATCATAACCTTCTACATGC-GTGATTTTATGAATCTTGCGGCCCA
1 TTGATTTACGATCACGACCTTCTACTTACAG-GATTTTATGAATCTCACGGTCCA
* * * *
80501732 CTGATTTATGTTGACGACCTTCT
1 TTGATTTACGATCACGACCTTCT
80501755 CTTTATGGGA
Statistics
Matches: 323, Mismatches: 73, Indels: 10
0.80 0.18 0.02
Matches are distributed among these distances:
53 3 0.01
54 319 0.99
55 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.38
Consensus pattern (54 bp):
TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCACGGTCCA
Found at i:80501489 original size:108 final size:107
Alignment explanation
Indices: 80501300--80501754 Score: 435
Period size: 108 Copynumber: 4.2 Consensus size: 107
80501290 AGAGCTGCAG
* * * * *
80501300 TTGATTTACAATCACGACATTTTAGTTACAGGATTTTATGAATCTCATGGTCCATTGATTTACGA
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCATGGTCCATTGATTTACAA
** *
80501365 TCATGACCTTCTACTTACAGGATTTTACGAATCTCGCGATCCA
66 TCACAACCTTCTACTTAC-GGATTTTATGAATCTCGCGATCCA
* * * * * ** *
80501408 TTGATTTACGATCACAACCTTCTATTTATAGGATTTTACGAATCTCGTGGTCTGTTGATTTACGA
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCATGGTCCATTGATTTACAA
* * * *
80501473 TCACAACTTTCTACTTACGGGGTTTTATTAATCTCGCGATCCT
66 TCACAACCTTCTACTTAC-GGATTTTATGAATCTCGCGATCCA
* * ** * * *
80501516 TTGATTTACGATCACGACCTTTTACTTACTGGATTTTAAAAATTTCATGGGCCATTTATTTACAA
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCATGGTCCATTGATTTACAA
* * * * *
80501581 TCACGACATTCTACTTACGAGATTTTATGAATCTCACGGTTCA
66 TCACAACCTTCTACTTACG-GATTTTATGAATCTCGCGATCCA
* * ***
80501624 TTGATTTACGATCACGACCTTCTACTTACGGGATTTTATGAATCT-AGCGGTCTGCTGATTTACA
1 TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCA-TGGTCCATTGATTTACA
* * * * **
80501688 ATCATAACCTTCTACATGCGTGATTTTATGAATCTTGCGGCCCA
65 ATCACAACCTTCTACTTACG-GATTTTATGAATCTCGCGATCCA
* * * *
80501732 CTGATTTATGTTGACGACCTTCT
1 TTGATTTACGATCACGACCTTCT
80501755 CTTTATGGGA
Statistics
Matches: 280, Mismatches: 65, Indels: 4
0.80 0.19 0.01
Matches are distributed among these distances:
107 2 0.01
108 278 0.99
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.38
Consensus pattern (107 bp):
TTGATTTACGATCACGACCTTCTACTTACAGGATTTTATGAATCTCATGGTCCATTGATTTACAA
TCACAACCTTCTACTTACGGATTTTATGAATCTCGCGATCCA
Found at i:80507809 original size:22 final size:22
Alignment explanation
Indices: 80507784--80507828 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
80507774 TTTAATAAAA
80507784 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
80507806 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
80507828 A
1 A
80507829 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:80512415 original size:22 final size:22
Alignment explanation
Indices: 80512387--80512431 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
80512377 AATAAAAAAA
80512387 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
80512409 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
80512431 A
1 A
80512432 CAATTCTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:80514934 original size:8 final size:8
Alignment explanation
Indices: 80514921--80514947 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
80514911 GGTATTTTAA
80514921 AAAATTTT
1 AAAATTTT
80514929 AAAATTTT
1 AAAATTTT
80514937 AAAATTTT
1 AAAATTTT
80514945 AAA
1 AAA
80514948 TAAGTAAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (8 bp):
AAAATTTT
Found at i:80515472 original size:14 final size:15
Alignment explanation
Indices: 80515453--80515481 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
80515443 AATTTTCAAC
80515453 TTTTTTAT-TTTTTA
1 TTTTTTATATTTTTA
80515467 TTTTTTATATTTTTA
1 TTTTTTATATTTTTA
80515482 AATTTTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTTATATTTTTA
Found at i:80516025 original size:18 final size:19
Alignment explanation
Indices: 80516002--80516040 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
80515992 CATTGTGTAC
80516002 TTAAAA-AAAATCCTAAAA
1 TTAAAAGAAAATCCTAAAA
*
80516020 TTAAAAGAAAATTCTAAAA
1 TTAAAAGAAAATCCTAAAA
80516039 TT
1 TT
80516041 CTAAAAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.62, C:0.08, G:0.03, T:0.28
Consensus pattern (19 bp):
TTAAAAGAAAATCCTAAAA
Found at i:80516775 original size:14 final size:14
Alignment explanation
Indices: 80516756--80516804 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
80516746 TCATATATTA
*
80516756 TTTATATTTATTTT
1 TTTATAATTATTTT
*
80516770 TTTATAAATATTTT
1 TTTATAATTATTTT
80516784 TATTACATAATTATTTT
1 T-TT--ATAATTATTTT
80516801 TTTA
1 TTTA
80516805 CATGTATCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 14 0.48
15 2 0.07
16 2 0.07
17 11 0.38
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTATAATTATTTT
Found at i:80516805 original size:16 final size:16
Alignment explanation
Indices: 80516763--80516807 Score: 58
Period size: 17 Copynumber: 2.9 Consensus size: 16
80516753 TTATTTATAT
80516763 TTATTTTTTT--ATAA
1 TTATTTTTTTACATAA
*
80516777 ATATTTTTATTACATAA
1 TTATTTTT-TTACATAA
80516794 TTATTTTTTTACAT
1 TTATTTTTTTACAT
80516808 GTATCATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 7 0.27
15 2 0.08
16 6 0.23
17 11 0.42
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (16 bp):
TTATTTTTTTACATAA
Found at i:80521958 original size:47 final size:48
Alignment explanation
Indices: 80521902--80522063 Score: 148
Period size: 47 Copynumber: 3.2 Consensus size: 48
80521892 TTATTTTTAT
80521902 TTTTATTTTAGTTAATACCATTATTAAGTTGTTAATATTTTTATATAC
1 TTTTATTTTAGTTAATACCATTATTAAGTTGTTAATATTTTTATATAC
* * * * * *
80521950 TTTTTTTTAAAAAAATTATGTTTATATCCTTTTTTAAATTGTTAATATTATTATATA-
1 -TTTTATT-------TTA-GTTAATA-CCATTATTAAGTTGTTAATATTTTTATATAC
* *
80522007 TTTTATTTTTGTTAATATCATTATTAAGTTGTTAATATTTTTATATAC
1 TTTTATTTTAGTTAATACCATTATTAAGTTGTTAATATTTTTATATAC
80522055 TTTT-TTTTA
1 TTTTATTTTA
80522064 AAAAATTTTA
Statistics
Matches: 88, Mismatches: 15, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
47 29 0.33
48 10 0.11
49 8 0.09
56 9 0.10
57 6 0.07
58 26 0.30
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.60
Consensus pattern (48 bp):
TTTTATTTTAGTTAATACCATTATTAAGTTGTTAATATTTTTATATAC
Found at i:80521992 original size:58 final size:56
Alignment explanation
Indices: 80521925--80522109 Score: 199
Period size: 58 Copynumber: 3.4 Consensus size: 56
80521915 AATACCATTA
* *
80521925 TTAAGTTGTTAATATTTTTATATACTTTTTTTTAAAAAAATTATGTTTATATCCTTTT
1 TTAAATTGTTAATATTATTATATACTTTTTTTT-AAAAAATTATGTTTATATCC-TTT
* * * *
80521983 TTAAATTGTTAATATTATTATATA--TTTTATT------TT-TGTTAATATCATTA
1 TTAAATTGTTAATATTATTATATACTTTTTTTTAAAAAATTATGTTTATATCCTTT
* *
80522030 TTAAGTTGTTAATATTTTTATATACTTTTTTTTAAAAAATTTTATGTTTATATCCTTT
1 TTAAATTGTTAATATTATTATATACTTTTTTTTAAAAAA--TTATGTTTATATCCTTT
80522088 TTAAATTGTTAATATTATTATA
1 TTAAATTGTTAATATTATTATA
80522110 GATTTTATTT
Statistics
Matches: 102, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
47 24 0.24
48 9 0.09
49 8 0.08
56 6 0.06
57 2 0.02
58 53 0.52
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (56 bp):
TTAAATTGTTAATATTATTATATACTTTTTTTTAAAAAATTATGTTTATATCCTTT
Found at i:80522012 original size:105 final size:105
Alignment explanation
Indices: 80521888--80522155 Score: 441
Period size: 105 Copynumber: 2.5 Consensus size: 105
80521878 ATGGTAAAAA
* * *
80521888 AATATTATT-TTTATTTTTATTTTAGTTAATACCATTATTAAGTTGTTAATATTTTTATATACTT
1 AATATTATTATATA-TTTTATTTTTGTTAATATCATTATTAAGTTGTTAATATTTTTATATACTT
80521952 TTTTTTAAAAAA-ATTATGTTTATATCCTTTTTTAAATTGTT
65 TTTTTTAAAAAATATTATGTTTATATCC-TTTTTAAATTGTT
80521993 AATATTATTATATATTTTATTTTTGTTAATATCATTATTAAGTTGTTAATATTTTTATATACTTT
1 AATATTATTATATATTTTATTTTTGTTAATATCATTATTAAGTTGTTAATATTTTTATATACTTT
*
80522058 TTTTTAAAAAATTTTATGTTTATATCCTTTTTAAATTGTT
66 TTTTTAAAAAATATTATGTTTATATCCTTTTTAAATTGTT
* *
80522098 AATATTATTATAGATTTTATTTTTGTTAATATCATTATTATGTTGTTAATAATTTTTA
1 AATATTATTATATATTTTATTTTTGTTAATATCATTATTAAGTTGTTAAT-ATTTTTA
80522156 ATTTTTATGT
Statistics
Matches: 154, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
105 130 0.84
106 24 0.16
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (105 bp):
AATATTATTATATATTTTATTTTTGTTAATATCATTATTAAGTTGTTAATATTTTTATATACTTT
TTTTTAAAAAATATTATGTTTATATCCTTTTTAAATTGTT
Found at i:80528337 original size:13 final size:13
Alignment explanation
Indices: 80528319--80528344 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80528309 TGTTTTCTCC
80528319 AAAATGAAAATGA
1 AAAATGAAAATGA
80528332 AAAATGAAAATGA
1 AAAATGAAAATGA
80528345 CTTGGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAATGAAAATGA
Found at i:80531289 original size:196 final size:197
Alignment explanation
Indices: 80530838--80531443 Score: 633
Period size: 207 Copynumber: 3.0 Consensus size: 197
80530828 AAGAAGGTAG
* * *
80530838 AACCTTTGTAGAGTTGTAGAAGTTTATTTCCATTAGAAAAATAATATCGTAGTTTATCTAGGATA
1 AACCTTTGTAGAGTTGTAGAAGTTTATTTTCACTAGAAAAATAATATCCTAGTTTATCTAGGATA
* * * * * * *
80530903 TAGAGGGTGACAACCCTAGTTAATGATACTAGGGTTTTTCTGTCTCATCTCCTTATATAAGGGGT
66 TA-AGGG-G-CGA--C-----AATGATACTAGGGTTTGTCTGTCCCACCTCCTTACATAAGAGAT
* * * * *
80530968 TTTGGGTCTCTCTCACATCGAATCCAATTACGAGTACTTCTTCGGCTTTTTGGACCTAGTACTCT
121 TTTAGGTCTCTCTCACATCGAATCCAATTAAGAGTACTTCTTAGACTTTTTGGACCCAGTACTCT
80531033 ATAATATGATCC
186 ATAATATGATCC
*
80531045 AACCTTTATAGAGTTGTAGAAGTTTATTTTCACTAGAAAAATAATATCCTAGTTTATCTAGGATA
1 AACCTTTGTAGAGTTGTAGAAGTTTATTTTCACTAGAAAAATAATATCCTAGTTTATCTAGGATA
* * *
80531110 TAAGGGGCGACAATGATAGTAGGGTTTGT-TGTCCCACCTCCTTACATGAGAGATTTTAGGTCTT
66 TAAGGGGCGACAATGATACTAGGGTTTGTCTGTCCCACCTCCTTACATAAGAGATTTTAGGTCTC
* * *
80531174 TCTTACATCG-AGCTCAATTAAGAGTACTTCTTAGACTTTTTGGACCCAGTACTCTGTAATATGA
131 TCTCACATCGAATC-CAATTAAGAGTACTTCTTAGACTTTTTGGACCCAGTACTCTATAATATGA
80531238 TCC
195 TCC
** *
80531241 AACCTTTGTAGAGTCATAGAAGTTTATTTTCACTAGAAAAACAATATCCTAGTTTATCTAGGATA
1 AACCTTTGTAGAGTTGTAGAAGTTTATTTTCACTAGAAAAATAATATCCTAGTTTATCTAGGATA
* * * ** * * *
80531306 TAGAGGGCGACAACCCTAGTTAATGATACTAAGGTTTTGT-TGTCCCATCTCAGTACATGAGGGG
66 TA-AGGG-G-CGA--C-----AATGATACT-AGGGTTTGTCTGTCCCACCTCCTTACATAAGAGA
* * * * * * *
80531370 TTTTAGGTCTCTCTCACATTGAGTCCAATTACGAGTACTTCTTGGGCTTTTTAGACCCAATACTC
120 TTTTAGGTCTCTCTCACATCGAATCCAATTAAGAGTACTTCTTAGACTTTTTGGACCCAGTACTC
80531435 TATAATATG
185 TATAATATG
80531444 GTTTAACCCG
Statistics
Matches: 341, Mismatches: 45, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
195 2 0.01
196 147 0.43
197 20 0.06
198 1 0.00
199 2 0.01
201 1 0.00
202 1 0.00
204 2 0.01
205 1 0.00
206 12 0.04
207 151 0.44
208 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.36
Consensus pattern (197 bp):
AACCTTTGTAGAGTTGTAGAAGTTTATTTTCACTAGAAAAATAATATCCTAGTTTATCTAGGATA
TAAGGGGCGACAATGATACTAGGGTTTGTCTGTCCCACCTCCTTACATAAGAGATTTTAGGTCTC
TCTCACATCGAATCCAATTAAGAGTACTTCTTAGACTTTTTGGACCCAGTACTCTATAATATGAT
CC
Found at i:80531716 original size:18 final size:18
Alignment explanation
Indices: 80531693--80531727 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
80531683 AGAATTGCAA
*
80531693 GTTTCCATTTTCATTTTC
1 GTTTCCATTTCCATTTTC
80531711 GTTTCCATTTCCATTTT
1 GTTTCCATTTCCATTTT
80531728 GAAAACCTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.23, G:0.06, T:0.60
Consensus pattern (18 bp):
GTTTCCATTTCCATTTTC
Found at i:80537039 original size:6 final size:6
Alignment explanation
Indices: 80537028--80537055 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
80537018 CCTTAAATCT
80537028 CTCTTC CTCTTC CTCTTC CTCTTC CTCT
1 CTCTTC CTCTTC CTCTTC CTCTTC CTCT
80537056 CGTTCTTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (6 bp):
CTCTTC
Found at i:80537848 original size:18 final size:18
Alignment explanation
Indices: 80537812--80537849 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
80537802 TGATTTTCAG
*
80537812 GAAGATAAACAAAGGGTT
1 GAAGATAAACAAAGAGTT
80537830 GAAGA-AAACAATAGAGTT
1 GAAGATAAACAA-AGAGTT
80537848 GA
1 GA
80537850 GATCTTATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.53, C:0.05, G:0.26, T:0.16
Consensus pattern (18 bp):
GAAGATAAACAAAGAGTT
Found at i:80543920 original size:23 final size:22
Alignment explanation
Indices: 80543879--80543924 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
80543869 TATATCACAT
80543879 ATATAATTTTTAAAATTAATATA
1 ATATAATTTTTAAAATTAA-ATA
*
80543902 ATATAATATTTT-AACTTAAATA
1 ATATAAT-TTTTAAAATTAAATA
80543924 A
1 A
80543925 AAATAGATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 13 0.62
24 4 0.19
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
ATATAATTTTTAAAATTAAATA
Found at i:80545382 original size:23 final size:22
Alignment explanation
Indices: 80545364--80545429 Score: 105
Period size: 23 Copynumber: 2.9 Consensus size: 22
80545354 AAATTTTGAT
80545364 TTATTTAGTGATAATATTTAGAA
1 TTATTTAGTGATAATATTTAG-A
*
80545387 TTATTTAGTAATAATATTTAGCA
1 TTATTTAGTGATAATATTTAG-A
80545410 TTATTTAGTGATAATATTTA
1 TTATTTAGTGATAATATTTA
80545430 AGAAAAATCT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.50
Consensus pattern (22 bp):
TTATTTAGTGATAATATTTAGA
Found at i:80545383 original size:13 final size:13
Alignment explanation
Indices: 80545365--80545429 Score: 61
Period size: 13 Copynumber: 5.5 Consensus size: 13
80545355 AATTTTGATT
80545365 TATTTAGTGATAA
1 TATTTAGTGATAA
*
80545378 TATTTA--GA-AT
1 TATTTAGTGATAA
*
80545388 TATTTAGTAATAA
1 TATTTAGTGATAA
*
80545401 TATTTAG-CAT--
1 TATTTAGTGATAA
80545411 TATTTAGTGATAA
1 TATTTAGTGATAA
80545424 TATTTA
1 TATTTA
80545430 AGAAAAATCT
Statistics
Matches: 41, Mismatches: 5, Indels: 12
0.71 0.09 0.21
Matches are distributed among these distances:
10 14 0.34
11 4 0.10
12 3 0.07
13 20 0.49
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:80548407 original size:47 final size:45
Alignment explanation
Indices: 80548339--80548698 Score: 251
Period size: 47 Copynumber: 7.7 Consensus size: 45
80548329 TGATTTGTGC
* * *
80548339 GCCAGTGTAAGACATGTCTGGGAAATGCCTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGA
* * * * *
80548385 GCCAGTGTAATACCATGTCTGGGACATGGCGTC-GACATCCAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CAGATGAGA
* * * * * *
80548433 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGA
* *
80548479 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACAGATGAGA
* *
80548527 GCCAGTGTAAGATATGTCTGGGACATGCATCGGCCTCGACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACAGATGAGA
* * * * * * * *
80548574 GCTAGTGTAAGACGTGTCTGGGACACGCATTGGCTA-ATA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATG-AGA
* * * *
80548618 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CAC--AGATGAGA
*
80548666 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
80548699 AGCAATATAT
Statistics
Matches: 250, Mismatches: 45, Indels: 34
0.76 0.14 0.10
Matches are distributed among these distances:
43 3 0.01
44 31 0.12
45 1 0.00
46 38 0.15
47 92 0.37
48 60 0.24
49 20 0.08
50 5 0.02
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAGA
Found at i:80548503 original size:94 final size:93
Alignment explanation
Indices: 80548342--80548698 Score: 345
Period size: 94 Copynumber: 3.8 Consensus size: 93
80548332 TTTGTGCGCC
* * * * * *
80548342 AGTGTAAGACATGTCTGGGAAATGCCTCGGCCACATTATGAGAGCCAGTGTAATACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
* * * *
80548407 GACATGGCGTCGACATCCAGACGAGGGCT
66 GACATGGCATCGGCATCAAGA-GAGTGCT
* *
80548436 AGTGTAAGACATGTCTGGGACATGCGTCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
*
80548501 GACATGGCATCGGCA-CAGAGATGAGTGCC
66 GACATGGCATCGGCATCA-AGA-GAGTGCT
* * * *
80548530 AGTGTAAGATATGTCTGGGACATGCATCGGCC-TCGAC-A-GAGATAGCTAGTGTAAGA-CGTGT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTATGAG--AGCCAGTGTAAGACCATGT
* * * *
80548591 CTGGGACA-CGCATTGGC-T-AATAGTTGTGCT
62 CTGGGACATGGCATCGGCATCAAGAG-AGTGCT
* *
80548621 AGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGAGCTAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCATGTC
80548685 TGGGACATGGCATC
63 TGGGACATGGCATC
80548699 AGCAATATAT
Statistics
Matches: 219, Mismatches: 29, Indels: 30
0.79 0.10 0.11
Matches are distributed among these distances:
90 1 0.00
91 34 0.16
92 14 0.06
93 26 0.12
94 129 0.59
95 15 0.07
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATCAAGAGAGTGCT
Found at i:80548698 original size:141 final size:141
Alignment explanation
Indices: 80548339--80548698 Score: 387
Period size: 141 Copynumber: 2.6 Consensus size: 141
80548329 TGATTTGTGC
* * * *
80548339 GCCAGTGTAAGACATGTCTGGGAAATGCCTCGGC-CACAT-TATGAGAGCCAGTGTAATACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-CGTATATGAGAGCCAGTGTAAGACCATG
* * * *
80548402 TCTGGGACATGGCGTCGACATCCAGACGAGGGCTAGTGTAAGACATGTCTGGGACATGCGTCAGC
65 TCTGGGACATGGCATCGACATCCAGACGAGAGCTAGTGTAAGACATGTCTGGGACACGCATCAGC
*
80548467 CATACTATGATA
130 AATACTATGATA
* * * *
80548479 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAG-AGATGAGTGCCAGTGTAAGA-TAT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACCGTATATGAGAGCCAGTGTAAGACCAT
* * * * *
80548542 GTCTGGGACAT-GCATCGGCCTCGACAGA-GATAGCTAGTGTAAGACGTGTCTGGGACACGCATT
64 GTCTGGGACATGGCATCGACATC--CAGACGAGAGCTAGTGTAAGACATGTCTGGGACACGCATC
* *
80548605 GGCTAATAGT-TG-T-
127 AGC-AATACTATGATA
* * *
80548618 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-CGTATATGAGAGCCAGTGTAAGACCATG
80548683 TCTGGGACATGGCATC
65 TCTGGGACATGGCATC
80548699 AGCAATATAT
Statistics
Matches: 182, Mismatches: 27, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
137 9 0.05
138 15 0.08
139 28 0.15
140 34 0.19
141 64 0.35
142 31 0.17
143 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (141 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACCGTATATGAGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGACATCCAGACGAGAGCTAGTGTAAGACATGTCTGGGACACGCATCAGCA
ATACTATGATA
Found at i:80553180 original size:46 final size:46
Alignment explanation
Indices: 80553130--80553302 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
80553120 TGGTTGAGCA
*
80553130 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
80553176 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
80553223 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
80553269 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80553303 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:80553286 original size:93 final size:93
Alignment explanation
Indices: 80553127--80553297 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
80553117 GGATGGTTGA
* *
80553127 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
80553192 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
80553220 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
80553285 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80553298 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80553563 original size:19 final size:20
Alignment explanation
Indices: 80553526--80553563 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
80553516 ATAAGGTGGT
80553526 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
80553546 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
80553564 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:80560700 original size:46 final size:46
Alignment explanation
Indices: 80560650--80560822 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
80560640 TGGTTGAGCA
*
80560650 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
80560696 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
80560743 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
80560789 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80560823 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:80560806 original size:93 final size:93
Alignment explanation
Indices: 80560647--80560817 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
80560637 GGATGGTTGA
* *
80560647 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
80560712 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
80560740 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
80560805 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
80560818 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80561083 original size:19 final size:20
Alignment explanation
Indices: 80561046--80561083 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
80561036 ATAAGGTGGT
80561046 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
80561066 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
80561084 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:80565924 original size:30 final size:30
Alignment explanation
Indices: 80565862--80565924 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
80565852 ATCAATTTTC
* **
80565862 AAGTATAGTGGCAAAATGGTCATTTTGTCA
1 AAGTATAGGGGCAAAATGGTCATTTTACCA
* *
80565892 AAGTCTAGGGGCAAAATGGTTATTTTACCA
1 AAGTATAGGGGCAAAATGGTCATTTTACCA
80565922 AAG
1 AAG
80565925 ATGTGAATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (30 bp):
AAGTATAGGGGCAAAATGGTCATTTTACCA
Found at i:80566335 original size:47 final size:46
Alignment explanation
Indices: 80566264--80566625 Score: 242
Period size: 47 Copynumber: 7.7 Consensus size: 46
80566254 TGATTTGTGT
* *
80566264 GCCAGTGTAAGACATGTCTGGGACATGCCTCGGCCACATTATGAGG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGG
*
80566310 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATC-TAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CAT-GATGAGG
* * * * * **
80566358 GCTAGTGTAAGACATGTCTGTGACATGCGT-AGCCATACT-ATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TGATGAGG
* * *
80566403 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACA-TGATGAGG
* **
80566451 GCCAGTGTAAGATATGTCTGGGACATGCATCGGCCTCGACA-GA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACATGATGAGG
* * * * * * *
80566498 GCTAGTGTAAGACGTGTCTGGGACACGCATTGGCTA-AT-A-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATG-AGG
* * * *
80566542 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTAT-ATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CAC--ATGATGAGG
*
80566590 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
80566626 ATTATATCCC
Statistics
Matches: 251, Mismatches: 41, Indels: 44
0.75 0.12 0.13
Matches are distributed among these distances:
43 3 0.01
44 31 0.12
45 15 0.06
46 37 0.15
47 80 0.32
48 59 0.24
49 16 0.06
50 10 0.04
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGG
Found at i:80566427 original size:93 final size:93
Alignment explanation
Indices: 80566262--80566627 Score: 347
Period size: 93 Copynumber: 3.9 Consensus size: 93
80566252 GGTGATTTGT
* * * * * *
80566262 GTGCCAGTGTAAGACATGTCTGGGACATGCCTCGGCCACATTATGAGGGCCAGTGTAAGACCATG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATG
80566327 TCTGGGACATGGCATCGGCATCTAGACGA
66 TCTGGGACATGGCATCGGCATCTAGA-GA
* * * *
80566356 GGGCTAGTGTAAGACATGTCTGTGACATGCGT-AGCCATACTATGATAGCCAGTGTAAGACCATG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATG
* *
80566420 TCTGGGACATGGCATCAGCA-CAGAGATGA
66 TCTGGGACATGGCATCGGCATC-TAGA-GA
* * * *
80566449 GTGCCAGTGTAAGATATGTCTGGGACATGCATCGGCC-TCGAC-A-GAGATAGCTAGTGTAAGA-
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTATGAG--AGCCAGTGTAAGAC
* * * * **
80566510 CGTGTCTGGGACA-CGCATTGGC-TAATAG-TT
62 CATGTCTGGGACATGGCATCGGCAT-CTAGAGA
* *
80566540 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGAGCTAGTGTAAGACC
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACC
80566604 ATGTCTGGGACATGGCATCGGCAT
63 ATGTCTGGGACATGGCATCGGCAT
80566628 TATATCCCAT
Statistics
Matches: 221, Mismatches: 34, Indels: 33
0.77 0.12 0.11
Matches are distributed among these distances:
91 32 0.14
92 14 0.06
93 104 0.47
94 55 0.25
95 16 0.07
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (93 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGGCATCTAGAGA
Found at i:80568811 original size:21 final size:21
Alignment explanation
Indices: 80568795--80568835 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
80568785 TATCAAACTG
80568795 AGCCAAACCCAAGTCAAAATA
1 AGCCAAACCCAAGTCAAAATA
*
80568816 AGCCAAACCCAAGTTAAAAT
1 AGCCAAACCCAAGTCAAAAT
80568836 GCAAGTGCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.51, C:0.27, G:0.10, T:0.12
Consensus pattern (21 bp):
AGCCAAACCCAAGTCAAAATA
Found at i:80574196 original size:50 final size:50
Alignment explanation
Indices: 80574125--80574230 Score: 194
Period size: 50 Copynumber: 2.1 Consensus size: 50
80574115 TAAAAAGACC
*
80574125 ACTTTCCACTTCCTTTCATTGATCAAATGTTAGAATGTTTAGCGGGAAAA
1 ACTTACCACTTCCTTTCATTGATCAAATGTTAGAATGTTTAGCGGGAAAA
*
80574175 ACTTACCACTTCCTTTCATTGATCAAATGTTAGAATGTTTAGTGGGAAAA
1 ACTTACCACTTCCTTTCATTGATCAAATGTTAGAATGTTTAGCGGGAAAA
80574225 ACTTAC
1 ACTTAC
80574231 TACTATTGTT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (50 bp):
ACTTACCACTTCCTTTCATTGATCAAATGTTAGAATGTTTAGCGGGAAAA
Found at i:80585004 original size:66 final size:66
Alignment explanation
Indices: 80584912--80585068 Score: 208
Period size: 66 Copynumber: 2.4 Consensus size: 66
80584902 CCCCAAACAT
* * * *
80584912 GCCTGTGT-CTCAGGCCATGTGGAAACAGTGCATACATACTGACTTGTATCACACGGTCGAGGAC
1 GCCTGTGTGC-CAGGCCATGTGAAAACAGGGCATACATACTGACTTGTATCACACGGCCAAGGAC
80584976 AC
65 AC
* * * *
80584978 GCCTGTGTGCCAGGCCGTGTAAAAACAGGGCATACTTACTGACTTTTATCACACGGCCAAGGACA
1 GCCTGTGTGCCAGGCCATGTGAAAACAGGGCATACATACTGACTTGTATCACACGGCCAAGGACA
80585043 C
66 C
* *
80585044 GCCCGTATGCCAGGCCATGTGAAAA
1 GCCTGTGTGCCAGGCCATGTGAAAA
80585069 TTGAAGGGTA
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
66 77 0.99
67 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (66 bp):
GCCTGTGTGCCAGGCCATGTGAAAACAGGGCATACATACTGACTTGTATCACACGGCCAAGGACA
C
Found at i:80589014 original size:7 final size:7
Alignment explanation
Indices: 80589002--80589027 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
80588992 CCATTCCTAA
80589002 TCATCCC
1 TCATCCC
80589009 TCATCCC
1 TCATCCC
80589016 TCATCCC
1 TCATCCC
80589023 TCATC
1 TCATC
80589028 ATTTTCTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.54, G:0.00, T:0.31
Consensus pattern (7 bp):
TCATCCC
Found at i:80590053 original size:22 final size:22
Alignment explanation
Indices: 80590023--80590064 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
80590013 TGAAATTTTA
*
80590023 ATTAGTATTATGAGATAAAATT
1 ATTAGTATTATGAGAAAAAATT
* *
80590045 ATTATTATTATTAGAAAAAA
1 ATTAGTATTATGAGAAAAAA
80590065 ATTACTGTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (22 bp):
ATTAGTATTATGAGAAAAAATT
Found at i:80590169 original size:3 final size:3
Alignment explanation
Indices: 80590161--80590185 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
80590151 TATTTATAAA
80590161 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
80590186 GATAGGAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:80596763 original size:23 final size:22
Alignment explanation
Indices: 80596732--80596780 Score: 80
Period size: 23 Copynumber: 2.2 Consensus size: 22
80596722 TAAATTTGAT
*
80596732 TTTAAATTATTTAGTGATAATA
1 TTTAAATTATTTAGTGACAATA
80596754 TTTAAGATTATTTAGTGACAATA
1 TTTAA-ATTATTTAGTGACAATA
80596777 TTTA
1 TTTA
80596781 GGAAAATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 5 0.20
23 20 0.80
ACGTcount: A:0.39, C:0.02, G:0.10, T:0.49
Consensus pattern (22 bp):
TTTAAATTATTTAGTGACAATA
Found at i:80597010 original size:7 final size:6
Alignment explanation
Indices: 80596976--80597008 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
80596966 CCTTCTAAGG
80596976 CCCTTT CCCTTT CCCTTT CCCTTT CCACTTT CC
1 CCCTTT CCCTTT CCCTTT CCCTTT CC-CTTT CC
80597009 ACAATTCCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.03, C:0.52, G:0.00, T:0.45
Consensus pattern (6 bp):
CCCTTT
Found at i:80597744 original size:28 final size:28
Alignment explanation
Indices: 80597694--80597757 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
80597684 TGTTTTTATT
80597694 TTATTTTA--TTTACACTTTGTATTTCC
1 TTATTTTATTTTTACACTTTGTATTTCC
*
80597720 TTATTTTATTTTTACACTTTTTATTTCC
1 TTATTTTATTTTTACACTTTGTATTTCC
80597748 TTATTTTATT
1 TTATTTTATT
80597758 ATCTTAATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 8 0.23
28 27 0.77
ACGTcount: A:0.19, C:0.12, G:0.02, T:0.67
Consensus pattern (28 bp):
TTATTTTATTTTTACACTTTGTATTTCC
Found at i:80603500 original size:16 final size:16
Alignment explanation
Indices: 80603479--80603513 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
80603469 TGTTGTTTGT
80603479 ACTTTAAAATAAGCCA
1 ACTTTAAAATAAGCCA
80603495 ACTTTAAAATAAGCCA
1 ACTTTAAAATAAGCCA
80603511 ACT
1 ACT
80603514 AAACAAGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.20, G:0.06, T:0.26
Consensus pattern (16 bp):
ACTTTAAAATAAGCCA
Found at i:80605235 original size:418 final size:418
Alignment explanation
Indices: 80604446--80605285 Score: 1127
Period size: 418 Copynumber: 2.0 Consensus size: 418
80604436 GAATTTAATG
* * * *
80604446 ACAAACTAAATTGATTGTTTCTGAATGAACAATAATATCCAAAATTATCTAACAAAGAAACATAA
1 ACAAACTAAATTGAGTGTTTCTAAATGAACAATAATATCCAAAATTATCCAACAAAGAAACAGAA
* *
80604511 ACTAAATTCCGTCTAAAATATAGTACAACAAAATTGTCTTTTAAATCTAAATAAAATTAGAAAAA
66 ACTAAATTCCGTCTAAAAGATAGTACAACAAAACTGTCTTTTAAATCTAAATAAAATTAGAAAAA
* * *
80604576 AATTCCTAATAACAACCTAAAATGCCCAATTACTTCCACTTCCATCGATTTTCCATCGCCTACGA
131 AATCCCTAATAACAACCTAAAATGCCCAATTACTTCCACTTCCACCGATTTTCCATCGCCCACGA
* ** **
80604641 AGATGTGTCTTTTACCATTACTTGACTTTCGGTAGCTTAAACAACCCTGTATAGAAGCACTTATG
196 AGATGTGTCTTTCACCACCACTTGACTTTCGGTAGCTTAAACAACCCTACATAGAAGCACTTATG
* * * * *
80604706 TGAGTAGTAGAACTAGAACCTATCCACCAGATGTTTCTAGGTATTAAAACTAAATTAACCTTAGA
261 TGAGTAGTAGAACTAAAACCTATCCACCAGATGTTTCTAGGGACTAAAACTAAATTAACCTCAAA
* *
80604771 ATAAACTAAAGTAAGAATTACACCTTTATTTGCACGCCAAGTGTGATATGT-GACACATTCTTTC
326 ACAAACCAAAGTAAGAATTACACCTTTATTTGCACGCCAAGTGTGATATGTGGA-ACATTCTTTC
*
80604835 TTCACATGTCCATAATCGTTACAAAAGAA
390 TTCACATGTCCAGAATCGTTACAAAAGAA
* *
80604864 ACAAACTAAATTGAGTGTTT-TCAAATGAACAATAATATCCAAATTTTTCCAACAAAGAAACAGA
1 ACAAACTAAATTGAGTGTTTCT-AAATGAACAATAATATCCAAAATTATCCAACAAAGAAACAGA
* * *
80604928 AACTGAATTTCGTCTAAAAGA-CGTTACAACAAAACTGTCTTTTAAATCTAAATAAAAATTA-AA
65 AACTAAATTCCGTCTAAAAGATAG-TACAACAAAACTGTCTTTTAAATCTAAAT-AAAATTAGAA
* * * * *
80604991 AAATATCCCTAATAACAACCTAAAATGCCCAATTGCTTCCACTTCTACCGATTTTTCATTGCCCA
128 AAAAATCCCTAATAACAACCTAAAATGCCCAATTACTTCCACTTCCACCGATTTTCCATCGCCCA
* * * **
80605056 TGAAGATGTGTCTTTCACCACCATTTGTCTTTCGGTAGCTTAGGCAACCCTACATAGGAA-CACT
193 CGAAGATGTGTCTTTCACCACCACTTGACTTTCGGTAGCTTAAACAACCCTACATA-GAAGCACT
* * *
80605120 TATGTGAGTAGTAGAACTAAAATCTATCCACCA-AGTGTTTCTAGGGACTGAAACTAAATTACCC
257 TATGTGAGTAGTAGAACTAAAACCTATCCACCAGA-TGTTTCTAGGGACTAAAACTAAATTAACC
** * * * *
80605184 TCAAAACAAACCAAAGTAAGAATTATTCTTTTATTTGCATG-GAAGGTGTGATATTTGGAACATT
321 TCAAAACAAACCAAAGTAAGAATTACACCTTTATTTGCACGCCAA-GTGTGATATGTGGAACATT
** *
80605248 CTTTCTTCATGTGTCCAGACTCGTTACAAAAGAA
385 CTTTCTTCACATGTCCAGAATCGTTACAAAAGAA
80605282 ACAA
1 ACAA
80605286 CTCTCTATAA
Statistics
Matches: 366, Mismatches: 49, Indels: 14
0.85 0.11 0.03
Matches are distributed among these distances:
417 5 0.01
418 349 0.95
419 12 0.03
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.30
Consensus pattern (418 bp):
ACAAACTAAATTGAGTGTTTCTAAATGAACAATAATATCCAAAATTATCCAACAAAGAAACAGAA
ACTAAATTCCGTCTAAAAGATAGTACAACAAAACTGTCTTTTAAATCTAAATAAAATTAGAAAAA
AATCCCTAATAACAACCTAAAATGCCCAATTACTTCCACTTCCACCGATTTTCCATCGCCCACGA
AGATGTGTCTTTCACCACCACTTGACTTTCGGTAGCTTAAACAACCCTACATAGAAGCACTTATG
TGAGTAGTAGAACTAAAACCTATCCACCAGATGTTTCTAGGGACTAAAACTAAATTAACCTCAAA
ACAAACCAAAGTAAGAATTACACCTTTATTTGCACGCCAAGTGTGATATGTGGAACATTCTTTCT
TCACATGTCCAGAATCGTTACAAAAGAA
Found at i:80609581 original size:22 final size:21
Alignment explanation
Indices: 80609522--80609595 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 21
80609512 CCTCTTAATC
*
80609522 TTATTTTTATTTCAATCGAGTTT-
1 TTATTTTTATTT-AA--GATTTTA
* *
80609545 TTATTTACTTATTTATGTTTTTA
1 TTATTT--TTATTTAAGATTTTA
80609568 TTCATTTTTATTTAAGATTTTA
1 TT-ATTTTTATTTAAGATTTTA
80609590 TTATTT
1 TTATTT
80609596 GTTTTTTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
21 4 0.10
22 19 0.45
23 8 0.19
24 5 0.12
25 6 0.14
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.66
Consensus pattern (21 bp):
TTATTTTTATTTAAGATTTTA
Found at i:80609792 original size:33 final size:31
Alignment explanation
Indices: 80609725--80609786 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
80609715 TTTATACATG
80609725 TATTATTCAAAATTTATACATTATACATTATA
1 TATTATTCAAAATTTATA-ATTATACATTATA
*
80609757 TATTATTTTAAAATTTAT-ATTATACATTAT
1 TATTA-TTCAAAATTTATAATTATACATTAT
80609787 TTATATGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 12 0.43
32 5 0.18
33 11 0.39
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (31 bp):
TATTATTCAAAATTTATAATTATACATTATA
Found at i:80610638 original size:20 final size:22
Alignment explanation
Indices: 80610586--80610641 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 22
80610576 TATGAATCTA
*
80610586 ATATGTATATTATATCTTATCAT
1 ATATTTATATTAT-TCTTATCAT
*
80610609 GTATTT-TATTATTCTT-TCAT
1 ATATTTATATTATTCTTATCAT
80610629 AT-TTTATATTATT
1 ATATTTATATTATT
80610642 TAAGTTATCA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 3 0.10
20 12 0.41
21 4 0.14
22 6 0.21
23 4 0.14
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.61
Consensus pattern (22 bp):
ATATTTATATTATTCTTATCAT
Found at i:80611746 original size:25 final size:25
Alignment explanation
Indices: 80611714--80611768 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
80611704 TTTTTCAAAT
80611714 ATATATTATTTTAA-AAATTATAAA-A
1 ATATATTA-TTTAATAAATT-TAAAGA
80611739 ATATATTATTTAATAAATTTAAAGA
1 ATATATTATTTAATAAATTTAAAGA
80611764 ATATA
1 ATATA
80611769 CACGTAAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.32
25 19 0.68
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
ATATATTATTTAATAAATTTAAAGA
Found at i:80612504 original size:11 final size:11
Alignment explanation
Indices: 80612488--80612547 Score: 52
Period size: 11 Copynumber: 5.2 Consensus size: 11
80612478 TTGAATAATG
80612488 AATTAAAAATT
1 AATTAAAAATT
80612499 AATT-AAAA-T
1 AATTAAAAATT
80612508 AATTAAAAATAT
1 AATTAAAAAT-T
*
80612520 ATTATTTAAAAACT
1 A--A-TTAAAAATT
80612534 AATTAAAAAGTT
1 AATTAAAAA-TT
80612546 AA
1 AA
80612548 AAGTGAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
9 5 0.12
10 8 0.20
11 11 0.28
12 6 0.15
14 3 0.08
15 7 0.17
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (11 bp):
AATTAAAAATT
Found at i:80621471 original size:2 final size:2
Alignment explanation
Indices: 80621464--80621489 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
80621454 TGACTCAACA
80621464 AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC
80621490 TTACCGTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Done.