Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 247 of 325
Found at i:80632729 original size:13 final size:13
Alignment explanation
Indices: 80632711--80632736 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80632701 TTGAGCAAGC
80632711 GTAAGGCTTAAGT
1 GTAAGGCTTAAGT
80632724 GTAAGGCTTAAGT
1 GTAAGGCTTAAGT
80632737 TAAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (13 bp):
GTAAGGCTTAAGT
Found at i:80646913 original size:17 final size:17
Alignment explanation
Indices: 80646891--80646933 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
80646881 TTAATTGGTA
80646891 TATATATTTTGAAATT-T
1 TATATATTTTG-AATTAT
*
80646908 TATATATTTAGAATTAT
1 TATATATTTTGAATTAT
80646925 T-TATATTTT
1 TATATATTTT
80646934 ATATAATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (17 bp):
TATATATTTTGAATTAT
Found at i:80646980 original size:18 final size:18
Alignment explanation
Indices: 80646932--80646983 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
80646922 TATTTATATT
80646932 TTATATAATTTATTAAAAA
1 TTATATAATTT-TTAAAAA
* *
80646951 --AGTAGAAATTTTAAAAA
1 TTA-TATAATTTTTAAAAA
80646968 TTATATAATTTTTAAA
1 TTATATAATTTTTAAA
80646984 CTTTTTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
17 8 0.31
18 17 0.65
19 1 0.04
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (18 bp):
TTATATAATTTTTAAAAA
Found at i:80647416 original size:22 final size:23
Alignment explanation
Indices: 80647376--80647421 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
80647366 ACCCCAATAT
*
80647376 TTTAAATGATTTAAATTTTTTTA
1 TTTAAAAGATTTAAATTTTTTTA
80647399 TTTAAAAG-TTT-AATTTTTTTA
1 TTTAAAAGATTTAAATTTTTTTA
80647420 TT
1 TT
80647422 CAAACTCTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 12 0.55
22 3 0.14
23 7 0.32
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTAAAAGATTTAAATTTTTTTA
Found at i:80657370 original size:42 final size:42
Alignment explanation
Indices: 80657319--80657401 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
80657309 CAAGGACAAG
*
80657319 TTTTATATGCATAATCAAAACCATTATTATTCAAATGACCTA
1 TTTTATATGCATAATCAAAACCATTATCATTCAAATGACCTA
80657361 TTTTATATGCATAATCAAAACCATTATCATTCAAATGACCT
1 TTTTATATGCATAATCAAAACCATTATCATTCAAATGACCT
80657402 TTATACATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.40, C:0.18, G:0.05, T:0.37
Consensus pattern (42 bp):
TTTTATATGCATAATCAAAACCATTATCATTCAAATGACCTA
Found at i:80660877 original size:22 final size:22
Alignment explanation
Indices: 80660852--80660899 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
80660842 AACGCTTTAA
80660852 AGTAGGCACCAAAGTGCAAATC
1 AGTAGGCACCAAAGTGCAAATC
* *
80660874 AGTAGGCACCATAGTGTAAATC
1 AGTAGGCACCAAAGTGCAAATC
80660896 AGTA
1 AGTA
80660900 TATATATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.19
Consensus pattern (22 bp):
AGTAGGCACCAAAGTGCAAATC
Found at i:80666544 original size:6 final size:6
Alignment explanation
Indices: 80666525--80666590 Score: 69
Period size: 6 Copynumber: 10.7 Consensus size: 6
80666515 TTATTTTATC
** * * *
80666525 AAAATA AATTTA AAAATAA AAAACAA AAAACA AAAACA AAAATA AAAATA
1 AAAATA AAAATA AAAAT-A AAAA-TA AAAATA AAAATA AAAATA AAAATA
80666575 AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAA
80666591 ACAAACCTGA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
6 41 0.80
7 10 0.20
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:80666552 original size:7 final size:7
Alignment explanation
Indices: 80666536--80666595 Score: 50
Period size: 7 Copynumber: 8.3 Consensus size: 7
80666526 AAATAAATTT
*
80666536 AAAAATA
1 AAAAACA
80666543 AAAAACA
1 AAAAACA
80666550 AAAAAC-
1 AAAAACA
80666556 AAAAACA
1 AAAAACA
*
80666563 AAAATAAA
1 AAAA-ACA
*
80666571 AATAAAAA
1 AA-AAACA
*
80666579 TAAAAATA
1 -AAAAACA
80666587 AAAAACA
1 AAAAACA
80666594 AA
1 AA
80666596 CCTGAACCGA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
6 6 0.13
7 24 0.53
8 11 0.24
9 4 0.09
ACGTcount: A:0.85, C:0.07, G:0.00, T:0.08
Consensus pattern (7 bp):
AAAAACA
Found at i:80666922 original size:35 final size:36
Alignment explanation
Indices: 80666855--80666925 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
80666845 CAATGATATG
80666855 CAATCTTAGATATGATATGCAATCTTAAATATGATA
1 CAATCTTAGATATGATATGCAATCTTAAATATGATA
*
80666891 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAAATATGATA
80666926 TGCAATTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 18 0.53
36 16 0.47
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (36 bp):
CAATCTTAGATATGATATGCAATCTTAAATATGATA
Found at i:80666944 original size:17 final size:19
Alignment explanation
Indices: 80666847--80666937 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
80666837 ATAATCTTCA
80666847 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
80666866 ATGATATGCAATCTTAAAT
1 ATGATATGCAATCTTAGAT
80666885 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80666902 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
80666920 ATGATATGCAATTTTAGA
1 ATGATATGCAATCTTAGA
80666938 AGATATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.23
18 16 0.24
19 35 0.53
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:80666963 original size:22 final size:22
Alignment explanation
Indices: 80666847--80666960 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
80666837 ATAATCTTCA
80666847 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
80666866 ATGATATGCAATCTT--AA-AT
1 ATGATATGCAATCTTAGAAGAT
80666885 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
80666902 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
80666920 ATGATATGCAATTTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
80666942 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
80666961 GATTTAATTT
Statistics
Matches: 82, Mismatches: 4, Indels: 14
0.82 0.04 0.14
Matches are distributed among these distances:
16 1 0.01
17 14 0.17
18 16 0.20
19 31 0.38
20 1 0.01
22 8 0.10
23 11 0.13
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.39
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:80667246 original size:17 final size:17
Alignment explanation
Indices: 80667220--80667256 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
80667210 CATGTTTCCC
*
80667220 TAATTTTTTTATATATTT
1 TAATTTTTTAATA-ATTT
80667238 TAATTTTTTAATAATTT
1 TAATTTTTTAATAATTT
80667255 TA
1 TA
80667257 GTATCATATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TAATTTTTTAATAATTT
Found at i:80670577 original size:49 final size:49
Alignment explanation
Indices: 80670521--80671092 Score: 575
Period size: 47 Copynumber: 11.6 Consensus size: 49
80670511 TATTTGAATA
*
80670521 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
80670570 AATGTGAAAGTGTATATATATGTGATAAGGCCGGATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
80670619 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
80670668 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * ***
80670715 AATGTGAAAGTGTAGCCGA-ATGGCCAATGTGATGAATG-TGAAAGTGTATATATGTGAT-
1 AATGTGAAAGTGTA---TATAT-----ATGTGAT-AAGGCCG-AA-TGGCCA-ATGTGATG
* * * * *
80670773 AAGGCCGAATG-GCCATGTGATGAATGTGA-AAGTGTAGCCGAATGGCCAATGTGATG
1 AATG-TGAAAGTG-TATAT-AT--ATGTGATAA--G--GCCGAATGGCCAATGTGATG
* *
80670829 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
80670878 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
80670925 ATTGTGAAAGTGTATAT-T-TGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
80670972 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
80671019 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
80671066 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
80671093 TCCCGAAGGG
Statistics
Matches: 444, Mismatches: 47, Indels: 66
0.80 0.08 0.12
Matches are distributed among these distances:
45 3 0.01
46 1 0.00
47 216 0.49
48 2 0.00
49 140 0.32
51 3 0.01
52 7 0.02
53 4 0.01
54 2 0.00
55 21 0.05
56 15 0.03
57 8 0.02
58 10 0.02
59 12 0.03
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:80670735 original size:34 final size:34
Alignment explanation
Indices: 80670695--80670842 Score: 154
Period size: 34 Copynumber: 4.0 Consensus size: 34
80670685 ATGTGATAAG
80670695 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
80670729 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTG----TA
* *
80670767 TG-TGATAAGGCCGAATGGCCATGTGATGAATGTGAAAGTGTA
1 -GCCGA-ATGGCC--A-----ATGTGATGAATGTGAAAGTGTA
80670809 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
80670843 TATATATGTG
Statistics
Matches: 96, Mismatches: 4, Indels: 28
0.75 0.03 0.22
Matches are distributed among these distances:
34 54 0.56
38 4 0.04
39 7 0.07
41 7 0.07
42 4 0.04
46 20 0.21
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.25
Consensus pattern (34 bp):
GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:80670745 original size:81 final size:80
Alignment explanation
Indices: 80670652--80670891 Score: 426
Period size: 80 Copynumber: 3.0 Consensus size: 80
80670642 GATAAGGCCT
*
80670652 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATGAA
80670717 TGTGAAAGTGTAGCCG
65 TGTGAAAGTGTAGCCG
80670733 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCATGTGATGAAT
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCATGTGATGAAT
80670798 GTGAAAGTGTAGCCG
66 GTGAAAGTGTAGCCG
*
80670813 AATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCC-ATGTGATG
80670878 AATGTGAAAGTGTA
63 AATGTGAAAGTGTA
80670892 TATATGTGAT
Statistics
Matches: 154, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
80 54 0.35
81 53 0.34
82 25 0.16
83 22 0.14
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (80 bp):
AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCATGTGATGAAT
GTGAAAGTGTAGCCG
Found at i:80673378 original size:40 final size:40
Alignment explanation
Indices: 80673315--80673682 Score: 523
Period size: 40 Copynumber: 9.3 Consensus size: 40
80673305 AGGTCTCGAC
80673315 GATG-ATCC-GGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
80673353 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
80673393 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
80673433 GATGTA-CCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
80673471 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
80673511 GATGTATCCGGACTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
80673550 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
80673590 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * *
80673630 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
80673670 GACGTATTCGGGC
1 GATGTATCCGGGC
80673683 CTTCGTGCCT
Statistics
Matches: 299, Mismatches: 24, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
38 30 0.10
39 64 0.21
40 203 0.68
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:80673575 original size:79 final size:79
Alignment explanation
Indices: 80673315--80673682 Score: 526
Period size: 79 Copynumber: 4.7 Consensus size: 79
80673305 AGGTCTCGAC
*
80673315 GATG-ATCC-GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTACCCGGGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGT-CCGAAG
80673378 AGCATTCATGCTAGT
65 AGCATTCATGCTAGT
*
80673393 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA-CCGGGCTAAGTCCGAAGA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGA
80673457 GCATTCATGCTAGT
66 GCATTCATGCTAGT
*
80673471 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTCCGAAGA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGA
80673536 GCATTCATGCTAGT
66 GCATTCATGCTAGT
* * * * * **
80673550 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATATATCCGTGCTAAACCTCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTC-CGAAG
* *
80673615 AGCATTCGTGCTGGT
65 AGCATTCATGCTAGT
* * * * * * *
80673630 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGACGTATTCGGGC
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGC
80673683 CTTCGTGCCT
Statistics
Matches: 261, Mismatches: 25, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
78 70 0.27
79 97 0.37
80 94 0.36
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGA
GCATTCATGCTAGT
Found at i:80676975 original size:49 final size:49
Alignment explanation
Indices: 80676919--80677077 Score: 286
Period size: 49 Copynumber: 3.3 Consensus size: 49
80676909 TATTTGAATA
80676919 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
80676968 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
80677017 AATGTGAAAGTGTA-A-ATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
80677064 AATGTGAAAGTGTA
1 AATGTGAAAGTGTA
80677078 GCCGAATGGC
Statistics
Matches: 107, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
47 44 0.41
48 1 0.01
49 62 0.58
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:80677045 original size:96 final size:96
Alignment explanation
Indices: 80676919--80677412 Score: 603
Period size: 96 Copynumber: 5.3 Consensus size: 96
80676909 TATTTGAATA
*
80676919 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTA-A-ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
80676984 TATATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATG
80677017 AATGTGAAAGTGTAAATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG------
1 AATGTGAAAGTGTAAATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * **
80677076 TA-GCCGA-ATGGCC-AAT--ATGATGAATG-TG
66 TATG-TGATAAGGCCTAATGGCCGATG--TGATG
* * * *
80677104 AAAGT----GTATATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTAAATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
80677165 TATGTGATAAGGTCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
80677196 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTAAATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
80677261 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
80677292 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTAAATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * * * *
80677355 TATGTGACAGGGCCGAGTGGCCAACGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
80677386 GATGTGAAAGTGTATAA-ATGTGATAAG
1 AATGTGAAAGTGTA-AATATGTGATAAG
80677413 TCCCGAAGGG
Statistics
Matches: 346, Mismatches: 30, Indels: 44
0.82 0.07 0.10
Matches are distributed among these distances:
83 47 0.14
86 4 0.01
87 6 0.02
88 5 0.01
89 10 0.03
90 9 0.03
91 5 0.01
92 6 0.02
93 4 0.01
94 51 0.15
95 1 0.00
96 183 0.53
97 1 0.00
98 14 0.04
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTAAATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:80677054 original size:47 final size:47
Alignment explanation
Indices: 80676919--80677412 Score: 548
Period size: 47 Copynumber: 10.6 Consensus size: 47
80676909 TATTTGAATA
80676919 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTA-A-ATATGTGATAAGGCCTAATGGCCAATGTGATG
*
80676968 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTA-A-ATATGTGATAAGGCCTAATGGCCAATGTGATG
*
80677017 AATGTGAAAGTGTAAATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTAAATATGTGATAAGGCCTAATGGCCAATGTGATG
* * * ***
80677064 AATGTGAAAGTG----TA-GCCGA-ATGGCCAATATGATGAATGTGA--
1 AATGTGAAAGTGTAAATATG-TGATAAGGCCTA-ATGGCCAATGTGATG
* * * *
80677105 AA-GT----GTATATATATGTGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAAAGTGTAAATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
80677147 AATGTGAAAGTGTATATATATGTGATAAGGTCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTA-A-ATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
80677196 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTAAATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
80677243 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTA-A-ATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
80677292 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTAAATATGTGATAAGGCCTAATGGCCAATGTGATG
* * * * * *
80677339 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTAAATATGTGATAAGGCCTAATGGCCAATGTGATG
*
80677386 GATGTGAAAGTGTATAA-ATGTGATAAG
1 AATGTGAAAGTGTA-AATATGTGATAAG
80677413 TCCCGAAGGG
Statistics
Matches: 384, Mismatches: 41, Indels: 42
0.82 0.09 0.09
Matches are distributed among these distances:
36 2 0.01
40 17 0.04
41 9 0.02
42 9 0.02
43 16 0.04
47 182 0.47
48 2 0.01
49 147 0.38
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTAAATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:80677084 original size:34 final size:34
Alignment explanation
Indices: 80677044--80677111 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
80677034 ATGTGATAAG
*
80677044 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 GCCGAATGGCCAATATGATGAATGTGAAAGTGTA
80677078 GCCGAATGGCCAATATGATGAATGTGAAAGTGTA
1 GCCGAATGGCCAATATGATGAATGTGAAAGTGTA
80677112 TATATATGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.34, C:0.12, G:0.31, T:0.24
Consensus pattern (34 bp):
GCCGAATGGCCAATATGATGAATGTGAAAGTGTA
Found at i:80677141 original size:83 final size:81
Alignment explanation
Indices: 80677001--80677160 Score: 275
Period size: 83 Copynumber: 2.0 Consensus size: 81
80676991 GATAAGGCCT
* * *
80677001 AATGGCCGATGTGATGAATGTGAAAGTGTAAATATGTGATAAGGCCGAATGGCCAATGTGATGAA
1 AATGGCCAATATGATGAATGTGAAAGTGTAAATATGTGATAAGGCCGAATGACCAATGTGATGAA
80677066 TGTGAAAGTGTAGCCG
66 TGTGAAAGTGTAGCCG
80677082 AATGGCCAATATGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGACCAATGTGATG
1 AATGGCCAATATGATGAATGTGAAAGTGTA-A-ATATGTGATAAGGCCGAATGACCAATGTGATG
80677147 AATGTGAAAGTGTA
64 AATGTGAAAGTGTA
80677161 TATATATGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
81 28 0.38
82 1 0.01
83 45 0.61
ACGTcount: A:0.36, C:0.09, G:0.29, T:0.26
Consensus pattern (81 bp):
AATGGCCAATATGATGAATGTGAAAGTGTAAATATGTGATAAGGCCGAATGACCAATGTGATGAA
TGTGAAAGTGTAGCCG
Found at i:80687252 original size:78 final size:76
Alignment explanation
Indices: 80687139--80687586 Score: 680
Period size: 78 Copynumber: 5.8 Consensus size: 76
80687129 CGAAGAAATA
** * *
80687139 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGG-GAGCAGATCGAAGACATAACAGAT-TGACCTTCATTGAA
80687204 GCAGATCCAAGAT
64 GCAGATCCAAGAT
* * *
80687217 GATTTGGCATTTCTGTATTAGACAGGGAGCAGATCGAAGACACAGCAGATATGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGAAGACATAACAGAT-TGACCTTCATTGAA
80687282 GCAGATCCAAGAT
64 GCAGATCCAAGAT
* *
80687295 GATTTGACATCTCTGTACTAGACGGGGAGCAGATCGAAGACATAACAGATTGACCTTCATTGAAG
1 GATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGAAGACATAACAGATTGACCTTCATTGAAG
80687360 CAGATCCAAGAT
65 CAGATCCAAGAT
* *
80687372 GATTTGGCATCTCTGTATTAGACGGGAGCAGATCGAAGACACAGCAGATTGACCTTCATTGAAGC
1 GATTTGGCATCTCTGTATTAGACGGGAGCAGATCGAAGACATAACAGATTGACCTTCATTGAAGC
80687437 AGATCCAAGAT
66 AGATCCAAGAT
* * *
80687448 GATTTGACATCTCTGTACTAGACGGGGAGCAGATTGAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGAAGACATAACAGATT-GACCTTCATTGAA
80687513 GCAGATCCAAGAT
64 GCAGATCCAAGAT
*
80687526 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAAACATAACAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGAAGACATAACAGAT-TGACCTTCAT
80687587 GTGTTTACAT
Statistics
Matches: 340, Mismatches: 26, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
76 72 0.21
77 72 0.21
78 193 0.57
79 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (76 bp):
GATTTGGCATCTCTGTATTAGACGGGAGCAGATCGAAGACATAACAGATTGACCTTCATTGAAGC
AGATCCAAGAT
Found at i:80687443 original size:231 final size:234
Alignment explanation
Indices: 80687139--80687586 Score: 724
Period size: 231 Copynumber: 1.9 Consensus size: 234
80687129 CGAAGAAATA
* *
80687139 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTAGACGGAGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
* * * *
80687204 GCAGATCCAAGATGATTTGGCATTTCTGTATTAGACAGGGAGCAGATCGAAGACACAGCAGATAT
66 GCAGATCCAAGATGATTTGACATCTCTGTACTAGACAGGGAGCAGATCGAAGACACAACAGAT-T
*
80687269 -GACCTTCATTGAAGCAGATCCAAGATGATTTGACATCTCTGTACTAGACGGGGAGCAGATCGAA
130 GGACCTTCATTGAAGCAGATCCAAGATGATTTGACATCTCTGTACTAGACAGGGAGCAGATCGAA
*
80687333 GACATAACAGAT-TGACCTTCATTGAAGCAGATCCAAGAT
195 AACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGAT
**
80687372 GATTTGGCATCTCTGTATTAGACGG-GAGCAGATCGAAGACACAGCAGAT-TGACCTTCATTGAA
1 GATTTGGCATCTCCATATTAGACGGAGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
* * *
80687435 GCAGATCCAAGATGATTTGACATCTCTGTACTAGACGGGGAGCAGATTGAAGACATAACAGATTG
66 GCAGATCCAAGATGATTTGACATCTCTGTACTAGACAGGGAGCAGATCGAAGACACAACAGATTG
* *
80687500 GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAA
131 GACCTTCATTGAAGCAGATCCAAGATGATTTGACATCTCTGTACTAGACAGGGAGCAGATCGAAA
80687565 ACATAACAGATCTGACCTTCAT
196 ACATAACAGATCTGACCTTCAT
80687587 GTGTTTACAT
Statistics
Matches: 198, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
230 1 0.01
231 142 0.72
232 33 0.17
233 22 0.11
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (234 bp):
GATTTGGCATCTCCATATTAGACGGAGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGATGATTTGACATCTCTGTACTAGACAGGGAGCAGATCGAAGACACAACAGATTG
GACCTTCATTGAAGCAGATCCAAGATGATTTGACATCTCTGTACTAGACAGGGAGCAGATCGAAA
ACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGAT
Found at i:80687679 original size:45 final size:46
Alignment explanation
Indices: 80687609--80687794 Score: 202
Period size: 45 Copynumber: 4.1 Consensus size: 46
80687599 AAGCAGATCC
* *
80687609 AAGATGACAGATTTGGCATCTCTGTATTAAATGGGGAGCAAATCAG
1 AAGATAACAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCAG
* * * *
80687655 -AGATAACAGATTTGACATCTCTGTATTAGACGGGGGAGCAGAT-TG
1 AAGATAACAGATTTGGCATCTCTGTATTAAAC-GGGGAGCAAATCAG
* ** * *
80687700 AAGA-AGCAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATC-G
1 AAGATAACAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCAG
* * *
80687744 AAGATAACAGATTTGGCGTCTCTGTATTAGACGGGAAGCAAATCA-
1 AAGATAACAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCAG
80687789 AAGATA
1 AAGATA
80687795 GTAGATATCG
Statistics
Matches: 121, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
44 16 0.13
45 92 0.76
46 13 0.11
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.25
Consensus pattern (46 bp):
AAGATAACAGATTTGGCATCTCTGTATTAAACGGGGAGCAAATCAG
Found at i:80688221 original size:35 final size:37
Alignment explanation
Indices: 80688150--80688247 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
80688140 ATAATCTTCA
80688150 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
80688188 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
80688223 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
80688248 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:80688247 original size:17 final size:19
Alignment explanation
Indices: 80688150--80688240 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
80688140 ATAATCTTCA
80688150 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80688169 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80688188 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80688205 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
80688223 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
80688241 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:80688266 original size:22 final size:22
Alignment explanation
Indices: 80688150--80688263 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
80688140 ATAATCTTCA
80688150 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
80688169 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
80688188 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
80688205 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
80688223 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
80688245 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
80688264 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:80688553 original size:18 final size:17
Alignment explanation
Indices: 80688530--80688563 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
80688520 TTTCCCTGAT
*
80688530 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
80688548 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
80688564 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:80701395 original size:81 final size:81
Alignment explanation
Indices: 80701260--80701422 Score: 308
Period size: 81 Copynumber: 2.0 Consensus size: 81
80701250 ATTCCCATTA
*
80701260 CAAAACTTATCATTTAACACTTAAGCATAATCAAACATGTATCAGCAAATAACAAAACAGAGCAT
1 CAAAACTTATCATTTAACACTTAAGCATAATCAAACATGTATAAGCAAATAACAAAACAGAGCAT
80701325 GTGATAAAATATCTAT
66 GTGATAAAATATCTAT
*
80701341 CAAAACTTATCATTTAACACTTAAGCATAATCAAACATGTATAAGCAAATAACAAAATAGAGCAT
1 CAAAACTTATCATTTAACACTTAAGCATAATCAAACATGTATAAGCAAATAACAAAACAGAGCAT
80701406 GTGATAAAATATCTAT
66 GTGATAAAATATCTAT
80701422 C
1 C
80701423 TTATTAGTTG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.48, C:0.17, G:0.09, T:0.26
Consensus pattern (81 bp):
CAAAACTTATCATTTAACACTTAAGCATAATCAAACATGTATAAGCAAATAACAAAACAGAGCAT
GTGATAAAATATCTAT
Found at i:80704395 original size:94 final size:94
Alignment explanation
Indices: 80704213--80704386 Score: 249
Period size: 95 Copynumber: 1.8 Consensus size: 94
80704203 ACTTGTGTGA
* ** *
80704213 GCTAGAGTAAGACATGTCTGGGACATGCGTTGGCCACATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGAGTAAGACATGTCTGGGACATGCATCAGCCACATAATGAGAGCCAGTGTAAGACCATGTC
80704278 TGGGACATGGCATCAGCATTGAGACTAGT
66 TGGGACATGGCATCAGCATTGAGACTAGT
* ** * **
80704307 GCTAGAGTAAGACGTGTCTGGGACATGCATCAGCTTCGATAATGATAGTTAGTGTAAGACCATGT
1 GCTAGAGTAAGACATGTCTGGGACATGCATCAGCCAC-ATAATGAGAGCCAGTGTAAGACCATGT
80704372 CTGGGACATGGCATC
65 CTGGGACATGGCATC
80704387 GACTTGAGAT
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
94 31 0.45
95 38 0.55
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (94 bp):
GCTAGAGTAAGACATGTCTGGGACATGCATCAGCCACATAATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCAGCATTGAGACTAGT
Found at i:80704409 original size:47 final size:46
Alignment explanation
Indices: 80704258--80704412 Score: 156
Period size: 47 Copynumber: 3.3 Consensus size: 46
80704248 ACATTATGAG
80704258 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACTAGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-TTGAGA-T-GT
* * * *
80704307 -GCTAGAGTAAGA-CGTGTCTGGGACAT-GCATCAGCTTCGATAATGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTT-GA-GATG-T
**
80704353 AGTTAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGATGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CTTGAGATGT
80704399 GAGCCAGTGTAAGA
1 -AGCCAGTGTAAGA
80704413 TTATGTCCAG
Statistics
Matches: 88, Mismatches: 10, Indels: 18
0.76 0.09 0.16
Matches are distributed among these distances:
45 3 0.03
46 13 0.15
47 38 0.43
48 26 0.30
49 8 0.09
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (46 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTTGAGATGT
Found at i:80706046 original size:42 final size:42
Alignment explanation
Indices: 80705955--80706104 Score: 176
Period size: 42 Copynumber: 3.5 Consensus size: 42
80705945 GTCCTAGGCG
* * * * *
80705955 TGGTCTTACATGTAATCACATATCGGTACC-ACTGTCCCAGATA
1 TGGTCTTACACGAAATCACATAT-GATGCCGA-TGTCCCAGACA
* * *
80705998 GGGTCTTACACGAAATCACATATGATGCCGATGTCCTAGGCA
1 TGGTCTTACACGAAATCACATATGATGCCGATGTCCCAGACA
* *
80706040 TGGTCTTACACGAAGTCACATACGATGCCGATGTCCCAGACA
1 TGGTCTTACACGAAATCACATATGATGCCGATGTCCCAGACA
*
80706082 TGGTCTTACATGAAATCACATAT
1 TGGTCTTACACGAAATCACATAT
80706105 AAGAATCCTC
Statistics
Matches: 90, Mismatches: 16, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
42 69 0.77
43 21 0.23
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (42 bp):
TGGTCTTACACGAAATCACATATGATGCCGATGTCCCAGACA
Found at i:80710809 original size:23 final size:23
Alignment explanation
Indices: 80710781--80710840 Score: 102
Period size: 23 Copynumber: 2.6 Consensus size: 23
80710771 TGTCCCAAAG
80710781 CACACGGGCGTGTGCATTGTCTC
1 CACACGGGCGTGTGCATTGTCTC
*
80710804 TACACGGGCGTGTGCATTGTCTC
1 CACACGGGCGTGTGCATTGTCTC
*
80710827 CACACGAGCGTGTG
1 CACACGGGCGTGTG
80710841 AGGCTTAACC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.15, C:0.28, G:0.32, T:0.25
Consensus pattern (23 bp):
CACACGGGCGTGTGCATTGTCTC
Found at i:80711763 original size:22 final size:25
Alignment explanation
Indices: 80711738--80711785 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 25
80711728 GAAATACATT
*
80711738 AGTGAAA-GA-TTCTTGG-ACTCAA
1 AGTGAAAGGAGTTCCTGGAACTCAA
80711760 AGTGAAAGGAGTTCCTGGAACTCAA
1 AGTGAAAGGAGTTCCTGGAACTCAA
80711785 A
1 A
80711786 CAAGAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 2 0.09
24 6 0.27
25 7 0.32
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.23
Consensus pattern (25 bp):
AGTGAAAGGAGTTCCTGGAACTCAA
Found at i:80717566 original size:24 final size:24
Alignment explanation
Indices: 80717538--80717587 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
80717528 ACAAACTACA
80717538 TGGTGTATTGTTATGGAACTAACT
1 TGGTGTATTGTTATGGAACTAACT
80717562 TGGTGTATTGTTATGGAACTAACT
1 TGGTGTATTGTTATGGAACTAACT
80717586 TG
1 TG
80717588 TCGATTGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.08, G:0.26, T:0.42
Consensus pattern (24 bp):
TGGTGTATTGTTATGGAACTAACT
Found at i:80731074 original size:13 final size:15
Alignment explanation
Indices: 80731045--80731076 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
80731035 GAGAAAGGTT
80731045 GATTCAGAGGCAAGA
1 GATTCAGAGGCAAGA
80731060 GATTC-GAGG-AAGA
1 GATTCAGAGGCAAGA
80731073 GATT
1 GATT
80731077 AATGAGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.38, C:0.09, G:0.34, T:0.19
Consensus pattern (15 bp):
GATTCAGAGGCAAGA
Found at i:80732040 original size:35 final size:35
Alignment explanation
Indices: 80732001--80732073 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
80731991 TGATACGAAA
80732001 GTGACTGAAAATAAGATTAAATCAGTGCTAGTTGT
1 GTGACTGAAAATAAGATTAAATCAGTGCTAGTTGT
80732036 GTGACTGAAAATAAGATTAAATCAGTGCTAGTTGT
1 GTGACTGAAAATAAGATTAAATCAGTGCTAGTTGT
80732071 GTG
1 GTG
80732074 TGAGTATCCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.32
Consensus pattern (35 bp):
GTGACTGAAAATAAGATTAAATCAGTGCTAGTTGT
Found at i:80733635 original size:26 final size:26
Alignment explanation
Indices: 80733606--80733723 Score: 112
Period size: 26 Copynumber: 4.5 Consensus size: 26
80733596 ATAAAAGATC
* *
80733606 TAAAATAAATAATAAATGAAACAGCT
1 TAAAATAAATAATAAATAAAACAACT
* * * **
80733632 TAAAGTAAATAATATAAAAAAATAGTT
1 TAAAATAAATAATA-AATAAAACAACT
* * *
80733659 TCAAATAAATAATATATAAAAAAACT
1 TAAAATAAATAATAAATAAAACAACT
* *
80733685 TAAAATAAATAA-CAATAAAGCAACT
1 TAAAATAAATAATAAATAAAACAACT
80733710 TAAAATAAATAATA
1 TAAAATAAATAATA
80733724 TAAAAATTTT
Statistics
Matches: 72, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
25 21 0.29
26 31 0.43
27 20 0.28
ACGTcount: A:0.64, C:0.06, G:0.04, T:0.25
Consensus pattern (26 bp):
TAAAATAAATAATAAATAAAACAACT
Found at i:80733920 original size:152 final size:146
Alignment explanation
Indices: 80733652--80733932 Score: 318
Period size: 152 Copynumber: 1.9 Consensus size: 146
80733642 AATATAAAAA
* *
80733652 AATAGTTTCAAATAAATAATATATAAAAAAACTTAAAATAAATAACAATAAAGCAACTTAAAATA
1 AATAGTTTAAAATAAATAATATATAAAAAAACTTAAAATAAATAACAACAAAGCAACTTAAAATA
* *
80733717 AATAATATAAAAATTTTGAAAAAAATAAGATATAAAACAATTTAAATTGAATATTATATGTGAAA
66 AATAATATAAAAAATTT---AAAAATAAGATATAAAACAATTTAAAATGAATA--ATATGT-AAA
80733782 AATTAAGATAGATAATATATAG
125 AATTAAGATAGATAATATATAG
* * * * *
80733804 AATAGTTTAAAATAAATAATGTATAGAAATA-TATGAAATAAATAATATACAAAGCAA-TCTAAA
1 AATAGTTTAAAATAAATAATATATAAAAAAACT-TAAAATAAATAACA-ACAAAGCAACT-TAAA
* *
80733867 ATAAATAATATATAAGACAATTT-AAAATAATATATAAAA-ATGTTTAAAATGAATAATATGTAA
63 ATAAATAATATA-AA-A-AATTTAAAAATAAGATATAAAACA-ATTTAAAATGAATAATATGTAA
80733930 AAA
124 AAA
80733933 GAAATTTAAA
Statistics
Matches: 111, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
149 5 0.05
150 6 0.05
151 2 0.02
152 67 0.60
153 24 0.22
154 2 0.02
155 1 0.01
156 4 0.04
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.30
Consensus pattern (146 bp):
AATAGTTTAAAATAAATAATATATAAAAAAACTTAAAATAAATAACAACAAAGCAACTTAAAATA
AATAATATAAAAAATTTAAAAATAAGATATAAAACAATTTAAAATGAATAATATGTAAAAATTAA
GATAGATAATATATAG
Found at i:80733921 original size:26 final size:25
Alignment explanation
Indices: 80733655--80734054 Score: 116
Period size: 26 Copynumber: 15.7 Consensus size: 25
80733645 ATAAAAAAAT
* *
80733655 AGTTTCAAATAAATAATATATAAAAA
1 AGTTTAAAATGAATAATATAT-AAAA
** * *
80733681 AACTTAAAATAAATAACA-ATAAAGCA
1 AGTTTAAAATGAATAATATATAAA--A
* *
80733707 A-CTTAAAATAAAT-A-ATATAAAA
1 AGTTTAAAATGAATAATATATAAAA
* * *
80733729 ATTTTGAAAA-AAATAAGATATAAAA
1 AGTTT-AAAATGAATAATATATAAAA
* * *
80733754 CAATTTAAATTGAATATTATATGTGAAAA
1 -AGTTTAAAATGAATA--ATATAT-AAAA
* *
80733783 A--TTAAGAT-AGATAATATATAGAAT
1 AGTTTAAAATGA-ATAATATATA-AAA
* *
80733807 AGTTTAAAATAAATAATGTATAGAAA
1 AGTTTAAAATGAATAATATATA-AAA
* * * *
80733833 TA-TATGAAATAAATAATATACAAAGCA
1 -AGTTTAAAATGAATAATATATAAA--A
* *
80733860 A-TCTAAAATAAATAATATATAAGACA
1 AGTTTAAAATGAATAATATATAA-A-A
80733886 A-TTTAAAAT-AAT-ATATA-AAAA
1 AGTTTAAAATGAATAATATATAAAA
* *
80733907 TGTTTAAAATGAATAATATGTAAAA
1 AGTTTAAAATGAATAATATATAAAA
* * * *
80733932 AGAAATTTAAAATAAAGAATGTACAAAA
1 AG---TTTAAAATGAATAATATATAAAA
*
80733960 CAGTTTAAAA-GAAT-ATATAAAAAA
1 -AGTTTAAAATGAATAATATATAAAA
* *
80733984 ACGATTCT-ATAT-AAGTAATATATATAAT
1 A-G-TT-TAAAATGAA-TAATATATA-AAA
* *
80734012 AGTTTAAAATAAATTATATATAAAA
1 AGTTTAAAATGAATAATATATAAAA
* *
80734037 AATTTAAAATGGATAATA
1 AGTTTAAAATGAATAATA
80734055 GTTCGAAATA
Statistics
Matches: 289, Mismatches: 47, Indels: 77
0.70 0.11 0.19
Matches are distributed among these distances:
21 1 0.00
22 11 0.04
23 14 0.05
24 40 0.14
25 61 0.21
26 117 0.40
27 13 0.04
28 26 0.09
29 6 0.02
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (25 bp):
AGTTTAAAATGAATAATATATAAAA
Found at i:80736771 original size:23 final size:23
Alignment explanation
Indices: 80736731--80736818 Score: 78
Period size: 23 Copynumber: 3.9 Consensus size: 23
80736721 AGCTTATTGT
*
80736731 TTTCAGCTC-ATTGCAGCTTACCA
1 TTTCAGCTCGATAG-AGCTTACCA
* *
80736754 TTTTAGCTCG-TATGAGC-TACTA
1 TTTCAGCTCGATA-GAGCTTACCA
*
80736776 -TTCAGGTCGATAGAGCTTACCA
1 TTTCAGCTCGATAGAGCTTACCA
80736798 TTTCAGCTC-ATTAGAGCTTAC
1 TTTCAGCTCGA-TAGAGCTTAC
80736819 TGTTCATTAG
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
21 11 0.21
22 11 0.21
23 29 0.56
24 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (23 bp):
TTTCAGCTCGATAGAGCTTACCA
Found at i:80745804 original size:26 final size:26
Alignment explanation
Indices: 80745771--80745822 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
80745761 AGCTATAGAT
80745771 GTGTACCATGTTCTGTATACGTGATA
1 GTGTACCATGTTCTGTATACGTGATA
80745797 GTGTACCATGTTCTGTATACGTGATA
1 GTGTACCATGTTCTGTATACGTGATA
80745823 AGTCGTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (26 bp):
GTGTACCATGTTCTGTATACGTGATA
Found at i:80749617 original size:3 final size:3
Alignment explanation
Indices: 80749609--80749648 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
80749599 ATATGAGCTC
*
80749609 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CTT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
80749649 TTCTTCTGGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.30, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
CAT
Found at i:80749653 original size:9 final size:9
Alignment explanation
Indices: 80749609--80749654 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
80749599 ATATGAGCTC
*
80749609 CATCATCAT
1 CATCATCTT
*
80749618 CATCATCAT
1 CATCATCTT
*
80749627 CATCATCAT
1 CATCATCTT
80749636 CATCATCTT
1 CATCATCTT
*
80749645 CATCTTCTT
1 CATCATCTT
80749654 C
1 C
80749655 TGGTTATCTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.26, C:0.35, G:0.00, T:0.39
Consensus pattern (9 bp):
CATCATCTT
Found at i:80755122 original size:14 final size:14
Alignment explanation
Indices: 80755100--80755133 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
80755090 CTTTCTCTTC
*
80755100 TCTTCCTTTATTTT
1 TCTTTCTTTATTTT
*
80755114 TCTTTCTTTCTTTT
1 TCTTTCTTTATTTT
80755128 TCTTTC
1 TCTTTC
80755134 CCTTTCTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (14 bp):
TCTTTCTTTATTTT
Found at i:80757631 original size:49 final size:51
Alignment explanation
Indices: 80757559--80757698 Score: 185
Period size: 49 Copynumber: 2.8 Consensus size: 51
80757549 AGCCGAAGCT
*
80757559 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGATCACAATA
* * * * *
80757608 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACTCACGTGATCACAGTT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGATCACAATA
* * *
80757659 TTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACG
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACG
80757699 TGACCTCACA
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 39 0.50
50 1 0.01
51 38 0.49
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (51 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGATCACAATA
Found at i:80757688 original size:51 final size:49
Alignment explanation
Indices: 80757563--80757703 Score: 183
Period size: 51 Copynumber: 2.8 Consensus size: 49
80757553 GAAGCTATCT
* * *
80757563 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATAATCG
* * * **
80757612 GGTACACGTAGTAGCCTGCACTTAGTACTACTCACGTGATCACAGTTTTCG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATAATCG
*
80757663 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
80757704 TCACAATAGT
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
49 36 0.46
50 2 0.03
51 41 0.52
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (49 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATAATCG
Found at i:80759862 original size:21 final size:21
Alignment explanation
Indices: 80759823--80759862 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
80759813 CTATGCTCAA
* * *
80759823 AGGTTTGACAGTCTTGATGTG
1 AGGTTCGACAGTATCGATGTG
80759844 AGGTTCGACAGTATCGATG
1 AGGTTCGACAGTATCGATG
80759863 AGACTTAGTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.12, G:0.33, T:0.33
Consensus pattern (21 bp):
AGGTTCGACAGTATCGATGTG
Found at i:80788693 original size:26 final size:26
Alignment explanation
Indices: 80788664--80788738 Score: 132
Period size: 26 Copynumber: 2.9 Consensus size: 26
80788654 TGGTACAAAT
80788664 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80788690 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80788716 TGATAATGGGTTAGGTAAATGTT
1 TGATAATGGGTTAGGTAAATGTT
80788739 TGAGTTGCTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80793405 original size:26 final size:26
Alignment explanation
Indices: 80793376--80793483 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
80793366 TGATACAAAT
*
80793376 TGATAATGGGTTAGGTACATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
80793402 TGATAATGGATTAAGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80793428 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80793454 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80793480 TGAT
1 TGAT
80793484 GGGCATTTCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80798771 original size:21 final size:21
Alignment explanation
Indices: 80798747--80798787 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
80798737 AAATTTAACA
*
80798747 TCAATTTAATCCATTTCATAC
1 TCAATTTAATCCAATTCATAC
*
80798768 TCAATTTAATTCAATTCATA
1 TCAATTTAATCCAATTCATA
80798788 TCCTAGGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.44
Consensus pattern (21 bp):
TCAATTTAATCCAATTCATAC
Found at i:80803150 original size:14 final size:15
Alignment explanation
Indices: 80803122--80803152 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
80803112 TAGTTAATCA
80803122 ATTAAACCTTTAATT
1 ATTAAACCTTTAATT
80803137 ATTAAACC-TTAATT
1 ATTAAACCTTTAATT
80803151 AT
1 AT
80803153 CATTAGTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTAAACCTTTAATT
Found at i:80808902 original size:40 final size:39
Alignment explanation
Indices: 80808856--80809069 Score: 248
Period size: 40 Copynumber: 5.4 Consensus size: 39
80808846 CTCGTACAAG
* * * * *
80808856 GCCTTCGGGTCTTAGTCCGGATGTGGTCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCACAAAT
*
80808896 TCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCACAAAT
* * *
80808936 GCCTTCGGGGCTTAGCCCGGAATTTGTAACTCGCATAAAT
1 GCCTTCGGGACTTAGCCCGG-ATTAGTAACTCGCACAAAT
* *
80808976 GCCTTCGGGACTTAGCCTGAAATTAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCG-GATTAGTAACTCGCACAAAT
* * *
80809016 GCCTTCGGGACTTAGCCCGGAATTAATCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGG-ATTAGTAACTCGCACAAAT
*
80809056 GTCTTCGGGACTTA
1 GCCTTCGGGACTTA
80809070 ACCCCGTTAG
Statistics
Matches: 149, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
40 147 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAAT
Found at i:80808956 original size:80 final size:79
Alignment explanation
Indices: 80808820--80809069 Score: 281
Period size: 80 Copynumber: 3.2 Consensus size: 79
80808810 ACCCAATTAT
* *** * * * * *
80808820 CTTCGGGATTTAGCCGGATATAACCACTCGTAC-AAGGCCTTCGGGTCTTAGTCCGG-ATGTGGT
1 CTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
80808883 CACTAGCACAAATTC
65 CACTAGCACAAATTC
* *
80808898 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGGCTTAGCCCGGAATTTGT
1 CTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* * * *
80808963 AACTCGCATAAATGC
65 CACTAGCACAAATTC
* * *
80808978 CTTCGGGACTTAGCCTGAAATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAAT
1 CTTCGGGACTTAGCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
80809043 CACTAGCACAAATGT-
65 CACTAGCACAAAT-TC
80809058 CTTCGGGACTTA
1 CTTCGGGACTTA
80809070 ACCCCGTTAG
Statistics
Matches: 145, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
78 12 0.08
79 21 0.14
80 110 0.76
81 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
ACTAGCACAAATTC
Found at i:80817191 original size:205 final size:205
Alignment explanation
Indices: 80816915--80817418 Score: 731
Period size: 205 Copynumber: 2.5 Consensus size: 205
80816905 TGGGGAGCAG
* * ** * * * * * *
80816915 ATCGAAGATATAGCTGATTTGGATTTCACGTATTTATGATGAAGCAAATCCAAGATGATTTGTCG
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTAAGTTAAAGCAAATCTAAGATGATTTGGCA
* * * *
80816980 TCTCTGTAGTGTTAGAGAACAAATCGAAGTCTGGCATCTCTACTTCAATAGAGAGCAGATACATA
66 TCTCTGTATTGTTAGAGAACAAATCGAAGTCTGGCAACTCCACTTCAATAGAGAGCAGACACATA
* * *
80817045 GCAGATCTC-ACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTT
131 GCAGATC-CAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTAGCATCCTTGTGCTT
80817109 ACAAGGAACAA
195 ACAAGGAACAA
* *
80817120 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTAAAGAAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTAAGTTAAAGCAAATCTAAGATGATTTGGCA
* * * *
80817185 TCTCTGTATTGTTAGAGAACAAATCGAAGTCTGGCAACTCCACTTCGATGGAGGGTAGACACATA
66 TCTCTGTATTGTTAGAGAACAAATCGAAGTCTGGCAACTCCACTTCAATAGAGAGCAGACACATA
80817250 GCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTAGCATCCTTGTGCTTA
131 GCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTAGCATCCTTGTGCTTA
* *
80817315 TAAGGAGCAA
196 CAAGGAACAA
* *
80817325 ATCAAAGACGTAGCTGATTTGGCTTTCACGTGCTTAAGTTAAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTAAGTTAAAGCAAATCTAAGATGATTTGGCA
* *
80817390 TCTCTGTATTGTCAGGGAACAAATCGAAG
66 TCTCTGTATTGTTAGAGAACAAATCGAAG
80817419 AAGCAGATTT
Statistics
Matches: 268, Mismatches: 30, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
204 1 0.00
205 267 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (205 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTAAGTTAAAGCAAATCTAAGATGATTTGGCA
TCTCTGTATTGTTAGAGAACAAATCGAAGTCTGGCAACTCCACTTCAATAGAGAGCAGACACATA
GCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTAGCATCCTTGTGCTTA
CAAGGAACAA
Found at i:80817571 original size:45 final size:45
Alignment explanation
Indices: 80817492--80817597 Score: 142
Period size: 45 Copynumber: 2.4 Consensus size: 45
80817482 GAGTTTGCAA
* *
80817492 GGAGTAGATTGAAGA-AGCAAATTTGGCATCTCTGTATTAGACGG
1 GGAGTAGATCGAAGATAACAAATTTGGCATCTCTGTATTAGACGG
* *
80817536 GGAGTAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGG
1 GGAGTAGATCGAAGATAACAAATTTGGCATCTCTGTATTAGACGG
* * *
80817581 GAAGCAGATCAAAGATA
1 GGAGTAGATCGAAGATA
80817598 GTAGATATCG
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 14 0.26
45 40 0.74
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (45 bp):
GGAGTAGATCGAAGATAACAAATTTGGCATCTCTGTATTAGACGG
Found at i:80819364 original size:19 final size:21
Alignment explanation
Indices: 80819338--80819416 Score: 74
Period size: 20 Copynumber: 3.7 Consensus size: 21
80819328 AATGTGTATG
80819338 TATTATATATATT-TATACAT
1 TATTATATATATTATATACAT
*
80819358 T-TTATATATATTATATATAT
1 TATTATATATATTATATACAT
*
80819378 TATTATAT-TTTTATGTATACAT
1 TATTATATATATTA--TATACAT
*
80819400 TTTTAATATCATATTAT
1 TATT-ATAT-ATATTAT
80819417 TCATATGTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
19 11 0.23
20 12 0.26
21 6 0.13
22 9 0.19
23 5 0.11
25 4 0.09
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (21 bp):
TATTATATATATTATATACAT
Found at i:80819371 original size:9 final size:9
Alignment explanation
Indices: 80819338--80819386 Score: 64
Period size: 9 Copynumber: 5.4 Consensus size: 9
80819328 AATGTGTATG
80819338 TATTATATA
1 TATTATATA
*
80819347 TATTTATACA
1 TA-TTATATA
*
80819357 TTTTATATA
1 TATTATATA
80819366 TATTATATA
1 TATTATATA
80819375 TATTAT-TA
1 TATTATATA
80819383 TATT
1 TATT
80819387 TTTATGTATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
8 6 0.17
9 22 0.63
10 7 0.20
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (9 bp):
TATTATATA
Found at i:80819402 original size:42 final size:39
Alignment explanation
Indices: 80819351--80819430 Score: 99
Period size: 39 Copynumber: 2.0 Consensus size: 39
80819341 TATATATATT
*
80819351 TATACATTTTATATATATTATATATATT-ATTATATTTTTATG
1 TATACATTTT-TA-ATATCATAT-TATTCA-TATATTTTTATG
*
80819393 TATACATTTTTAATATCATATTATTCATATGTTTTTAT
1 TATACATTTTTAATATCATATTATTCATATATTTTTAT
80819431 ATTATGTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
39 14 0.40
40 9 0.26
41 2 0.06
42 10 0.29
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.59
Consensus pattern (39 bp):
TATACATTTTTAATATCATATTATTCATATATTTTTATG
Found at i:80819750 original size:26 final size:26
Alignment explanation
Indices: 80819721--80819774 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
80819711 ATTATGTATA
*
80819721 TATTTTTAATACTACGTATACATTTT
1 TATTTCTAATACTACGTATACATTTT
* * *
80819747 TATTTCTATTATTACGTATATATTTT
1 TATTTCTAATACTACGTATACATTTT
80819773 TA
1 TA
80819775 ATCTAGTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.09, G:0.04, T:0.57
Consensus pattern (26 bp):
TATTTCTAATACTACGTATACATTTT
Found at i:80819779 original size:25 final size:26
Alignment explanation
Indices: 80819733--80819785 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
80819723 TTTTTAATAC
* *
80819733 TACGTATACATTTTTATTTCTATTAT
1 TACGTATACATTTTTATATCTAGTAT
*
80819759 TACGTATATATTTTTA-ATCTAGTAT
1 TACGTATACATTTTTATATCTAGTAT
80819784 TA
1 TA
80819786 TATGTTGTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.30, C:0.09, G:0.06, T:0.55
Consensus pattern (26 bp):
TACGTATACATTTTTATATCTAGTAT
Found at i:80824198 original size:23 final size:21
Alignment explanation
Indices: 80824101--80824198 Score: 83
Period size: 22 Copynumber: 4.4 Consensus size: 21
80824091 TTTTCTTTTA
*
80824101 ATATTTTATATATTATTATGTAC
1 ATATTTT-TATA-TATTATGTAT
*
80824124 ATATTTTGATATCATTA-GTTAT
1 ATATTTTTATAT-ATTATG-TAT
80824146 ATATTTTTATATATTATGTAT
1 ATATTTTTATATATTATGTAT
*
80824167 ATTTCTTTTACTAT-TTCATGTAT
1 ATAT-TTTTA-TATATT-ATGTAT
80824190 ATATATTTT
1 ATAT-TTTT
80824199 TTTTCATCTC
Statistics
Matches: 63, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
21 12 0.19
22 28 0.44
23 23 0.37
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (21 bp):
ATATTTTTATATATTATGTAT
Found at i:80824210 original size:25 final size:26
Alignment explanation
Indices: 80824164--80824269 Score: 71
Period size: 22 Copynumber: 4.1 Consensus size: 26
80824154 ATATATTATG
*
80824164 TATATTTCTTTTACTATTTCATGTATA
1 TATATTT-TTTTACTATCTCATGTATA
*
80824191 TATATTTTTTTTC-ATCTCATGTATA
1 TATATTTTTTTACTATCTCATGTATA
* *
80824216 -A-A-TTTTTGAATA-CT-ATGTTATA
1 TATATTTTTTTACTATCTCATG-TATA
* *
80824238 TATATATTTTTAATACCATCTTATGTATA
1 TATAT-TTTTT--TACTATCTCATGTATA
80824267 TAT
1 TAT
80824270 TATTATATCT
Statistics
Matches: 61, Mismatches: 8, Indels: 18
0.70 0.09 0.21
Matches are distributed among these distances:
21 3 0.05
22 11 0.18
23 3 0.05
24 2 0.03
25 11 0.18
26 10 0.16
27 7 0.11
28 2 0.03
29 9 0.15
30 3 0.05
ACGTcount: A:0.30, C:0.09, G:0.05, T:0.56
Consensus pattern (26 bp):
TATATTTTTTTACTATCTCATGTATA
Found at i:80824270 original size:25 final size:26
Alignment explanation
Indices: 80824203--80824270 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 26
80824193 TATTTTTTTT
* *
80824203 CATCTCATGTATAAATTTTTGAATAC
1 CATCTTATGTATATATTTTTGAATAC
* * *
80824229 TATGTTATATATATATTTTT-AATAC
1 CATCTTATGTATATATTTTTGAATAC
80824254 CATCTTATGTATATATT
1 CATCTTATGTATATATT
80824271 ATTATATCTA
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
25 19 0.56
26 15 0.44
ACGTcount: A:0.34, C:0.10, G:0.06, T:0.50
Consensus pattern (26 bp):
CATCTTATGTATATATTTTTGAATAC
Found at i:80824508 original size:23 final size:23
Alignment explanation
Indices: 80824480--80824525 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
80824470 ATTATTATTA
80824480 TTATTAT-TAT-TATTAGTATATGT
1 TTATTATATATGTA-TA-TATATGT
80824503 TTATTATATATGTATATATATGT
1 TTATTATATATGTATATATATGT
80824526 ATATATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 14 0.67
24 5 0.24
25 2 0.10
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.59
Consensus pattern (23 bp):
TTATTATATATGTATATATATGT
Found at i:80824509 original size:3 final size:3
Alignment explanation
Indices: 80824468--80824494 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
80824458 CGTATGCATC
80824468 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
80824495 GTATATGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:80824522 original size:10 final size:10
Alignment explanation
Indices: 80824507--80824531 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
80824497 ATATGTTTAT
80824507 TATATATGTA
1 TATATATGTA
80824517 TATATATGTA
1 TATATATGTA
80824527 TATAT
1 TATAT
80824532 TTTTTAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (10 bp):
TATATATGTA
Found at i:80829462 original size:40 final size:40
Alignment explanation
Indices: 80829403--80829694 Score: 313
Period size: 40 Copynumber: 7.3 Consensus size: 40
80829393 CATTTGAATG
* *
80829403 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
80829443 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
80829483 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * *
80829523 TTATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
80829563 ATA-CCTGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCC-GGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * * * * *
80829603 TTATTCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
80829643 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
80829683 ATATCC-GGCTAA
1 ATATCCGGGCTAA
80829695 ATTCCGAAGA
Statistics
Matches: 202, Mismatches: 44, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
39 11 0.05
40 186 0.92
41 5 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:80829540 original size:80 final size:80
Alignment explanation
Indices: 80829407--80829675 Score: 439
Period size: 80 Copynumber: 3.4 Consensus size: 80
80829397 TGAATGATAT
* *
80829407 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATTCGGGCTAAGACCCGAAGGCATTTG
80829472 TGCGAGTTGCTATAC
66 TGCGAGTTGCTATAC
*
80829487 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATTCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATTCGGGCTAAGACCCGAAGGCATTTG
80829552 TGCGAGTTGCTATAC
66 TGCGAGTTGCTATAC
* * * *
80829567 CTGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATTCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATTCGGGCTAAGACCCGAAGGCATTTG
* * *
80829632 TGCGAGTTACTAAAT
66 TGCGAGTTGCTATAC
*
80829647 CCGGGCTAAGACCCGAAGGCATTTGTGCT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCT
80829676 TGTGGTTATA
Statistics
Matches: 177, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 177 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATTCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGCTATAC
Found at i:80837732 original size:40 final size:40
Alignment explanation
Indices: 80837541--80837725 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
80837531 TTGAATGATG
* * * * *
80837541 TCCGGGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
80837581 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80837621 TCCAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80837660 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
80837701 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80837726 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80837747 original size:79 final size:79
Alignment explanation
Indices: 80837594--80837758 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
80837584 GGACTAAGAT
* * **
80837594 CCGAAGGCATTTGTGCGAGATACTAATTCCAGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
80837659 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
80837673 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCAGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
80837736 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
80837752 CCGAAGG
1 CCGAAGG
80837759 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:80842718 original size:43 final size:43
Alignment explanation
Indices: 80842658--80842773 Score: 164
Period size: 43 Copynumber: 2.7 Consensus size: 43
80842648 AAAAAGAAGG
80842658 AAAAGATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATGAACA
1 AAAAGATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATGAACA
* * *
80842701 AAAGGATCAAGGTGAAAACCCGAAAAGGGCGTTTTGATTAACAA
1 AAAAGATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATGAAC-A
*
80842745 AAAAGAT-TAGGATGAAAACCC-AAAAGGGC
1 AAAAGATCAAGG-TGAAAACCCGAAAAGGGC
80842774 ATTCTAATGA
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
43 50 0.76
44 16 0.24
ACGTcount: A:0.46, C:0.15, G:0.25, T:0.15
Consensus pattern (43 bp):
AAAAGATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATGAACA
Found at i:80843711 original size:14 final size:14
Alignment explanation
Indices: 80843692--80843727 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
80843682 CATTGAGGTA
80843692 TTTTCAAATTCTAT
1 TTTTCAAATTCTAT
80843706 TTTTCAAATTCTAT
1 TTTTCAAATTCTAT
80843720 TTTTCAAA
1 TTTTCAAA
80843728 AATCAACTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.56
Consensus pattern (14 bp):
TTTTCAAATTCTAT
Found at i:80843780 original size:89 final size:88
Alignment explanation
Indices: 80843615--80844453 Score: 572
Period size: 89 Copynumber: 9.6 Consensus size: 88
80843605 CGTTAAGGTA
* * * **
80843615 TTTTCAATTTTTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTT
1 TTTTCAA-ATTTATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCA
** * *
80843680 CACATTGAGGTATTTTCAAATTCTAT
63 CACGCTGAGGTATTTTCAATTTCTGT
*
80843706 TTTTCAAATTCTATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
1 TTTTCAAATT-TATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG-TCAC
** * *
80843770 ACGCCAAGGTATTTTCAATTCCCGT
64 ACGCTGAGGTATTTTCAATTTCTGT
* * *
80843795 TTTTC------A------AAAAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCTCA
1 TTTTCAAATTTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCACA
80843848 CGCTGAGGTATTTTCAATTTCTGT
65 CGCTGAGGTATTTTCAATTTCTGT
* *
80843872 TTTTCAATTTCTATTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CA
1 TTTTCAAATT-TATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT--AGGTCA
*
80843935 CA--CTGAGGTATTTTCAATTTCCG-
63 CACGCTGAGGTATTTTCAATTTCTGT
* * * *
80843958 TTTTCCAACTTATGCTTTTCAAAAAGATCAATTTATATTGCGAGAGGTGAGTTGAGCCTCAGG--
1 TTTTCAAATTTAT--TTTTCAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTC
* *
80844021 ACACGCTGATGTATTTTCAATTCCTGATTT
62 ACACGCTGAGGTATTTTCAATTTCTG---T
* *
80844051 TTTTCAATTTATATTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
1 TTTTCAAATT-TATTTTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGT
* * * *
80844116 CGCACGCTGAGGTATTGTT-AGTTTATAT
61 CACACGCTGAGGTATT-TTCAATTTCTGT
80844144 TTTTC--A---A------AAAAAA-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACA
1 TTTTCAAATTTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGTCACA
* *
80844195 CACTGAGGTATTTTCAATTTTTGCT
65 CGCTGAGGTATTTTCAATTTCTG-T
* * * *
80844220 TTTT-AATTTTTGTTTTTCAAGAAAATCAA-TCCATATTGCAAGAGGTGAGTTGAGCCTTGGTTC
1 TTTTCAA-ATTTATTTTTCAA-AAAATCAACT-CATATTGCGAGAGGTGAGTTGAGCCTAGG-TC
**
80844283 ACGTGCTGAGGTATTTTCAATTTCTGT
62 ACACGCTGAGGTATTTTCAATTTCTGT
** * * * *
80844310 TCTTTCAAA-TTAAGTTTCAAAAAAAACCAACTCATATTCCGAGAGGTAAGTTGAGCCTTGGCTC
1 T-TTTCAAATTTATTTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG-TC
** * *
80844374 ACGTGCTGAGCTATTTTCAATTGCTGT
62 ACACGCTGAGGTATTTTCAATTTCTGT
* * * * * **
80844401 TATT--AATGTCTGTTTTT-AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 TTTTCAAAT-T-TATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
80844454 TCAGGATCAC
Statistics
Matches: 599, Mismatches: 86, Indels: 129
0.74 0.11 0.16
Matches are distributed among these distances:
74 2 0.00
75 18 0.03
76 5 0.01
77 98 0.16
78 8 0.01
82 1 0.00
84 1 0.00
85 3 0.01
86 7 0.01
87 30 0.05
88 46 0.08
89 176 0.29
90 16 0.03
91 104 0.17
92 10 0.02
93 13 0.02
94 37 0.06
95 5 0.01
96 17 0.03
97 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (88 bp):
TTTTCAAATTTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGTCACAC
GCTGAGGTATTTTCAATTTCTGT
Found at i:80843830 original size:77 final size:77
Alignment explanation
Indices: 80843725--80843878 Score: 220
Period size: 77 Copynumber: 2.0 Consensus size: 77
80843715 TCTATTTTTC
* * *
80843725 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCCAAGGTATTTTCAAT
1 AAAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG-TCACACGCCAAGGTATTTTCAAT
80843789 TCCCGTTTTTCAA
65 TCCCGTTTTTCAA
* **
80843802 AAAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCTCACGCTGAGGTATTTTCAATT
1 AAAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTCAATT
* *
80843867 TCTGTTTTTCAA
66 CCCGTTTTTCAA
80843879 TTTCTATTTG
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
77 66 0.97
78 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (77 bp):
AAAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTCAATT
CCCGTTTTTCAA
Found at i:80843832 original size:166 final size:164
Alignment explanation
Indices: 80843558--80844318 Score: 725
Period size: 166 Copynumber: 4.5 Consensus size: 164
80843548 GATTTCTGTC
* * *
80843558 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTAAG--ACACGTTAAGGTATTTTCA
1 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGTCACACGCTAAGGTATTTTCA
* ** * * *
80843621 ATTTTTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTTCACATT
65 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACACT
*
80843686 GAGGTATTTTCAAATTCT-ATTTTTCAAATTCTATTT
128 GAGGTATTTTCAAATTCTGATTTTTCAATTTCTATTT
*
80843722 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCCAAGGTATTTTCA
1 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG-TCACACGCTAAGGTATTTTCA
* * * * * *
80843787 ATTCCCGTTTTTCAAAAAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGTCTCACGCT
65 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACACT
*
80843852 GAGGTATTTTCAATTTCTG-TTTTTCAATTTCTATTT
128 GAGGTATTTTCAAATTCTGATTTTTCAATTTCTATTT
* * *
80843888 GTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACA--CTGAGGTATTTTC
1 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT--TGGTCACACGCTAAGGTATTTTC
* * * *
80843950 AATTTCCGTTTTCCAACTTATGCTTTTCAAAAAGATCAATTTATATTGCGAGAGGTGAGTTGAGC
64 AA-------TTT----C---TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * *
80844015 CTCAGGACACGCTGATGTATTTTC-AATTCCTGATTTTTTTCAATTTATATTT
115 CTCAGGACACACTGAGGTATTTTCAAATT-CTGA--TTTTTCAATTTCTATTT
* * *
80844067 TTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATT
1 TTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGTCACACGCTAAGGTATT
* * * *
80844132 GTT-AGTTTATATTTTTCAAAAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
61 -TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* * * * *
80844196 ACTGAGGTATTTTCAATTTTTGCTTTTT-AATTTTTGTTT
125 ACTGAGGTATTTTCAAATTCTGATTTTTCAATTTCTATTT
* ** *
80844235 TTCAAGAAAATCAA-TCCATATTGCAAGAGGTGAGTTGAGCCTTGGTTCACGTGCTGAGGTATTT
1 TTC-A-AAAATCAACT-CATATTGCGAGAGGTGAGTTGAGCCTTGG-TCACACGCTAAGGTATTT
80844299 TCAATTTCTGTTCTTTCAAA
62 TCAATTTCTGTT-TTTCAAA
80844319 TTAAGTTTCA
Statistics
Matches: 499, Mismatches: 60, Indels: 73
0.79 0.09 0.12
Matches are distributed among these distances:
163 1 0.00
164 53 0.11
165 7 0.01
166 201 0.40
167 7 0.01
168 14 0.03
169 5 0.01
171 65 0.13
172 3 0.01
175 4 0.01
176 19 0.04
178 47 0.09
179 18 0.04
182 2 0.00
183 40 0.08
185 11 0.02
186 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (164 bp):
TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTCACACGCTAAGGTATTTTCAA
TTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAG
GTATTTTCAAATTCTGATTTTTCAATTTCTATTT
Found at i:80844199 original size:260 final size:259
Alignment explanation
Indices: 80843891--80844367 Score: 603
Period size: 260 Copynumber: 1.8 Consensus size: 259
80843881 TCTATTTGTC
80843891 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACACTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACACTGAGGTATTTTCAATTTC
** *
80843956 CG-TTTTCCAACTTATGCTTTTCAA-AAAGATCAATTTATATTGCGAGAGGTGAGTTGAGCCTCA
66 CGCTTTT-CAACTTATGCTTTTCAAGAAA-ATCAATCCATATTGCAAGAGGTGAGTTGAGCCT-A
* * * * *
80844019 GG-ACAC-GCTGATGTATTTTCAATTCCTGATTTTTTTCAATTTATATTTTTCAAAAAAAAATCA
128 GGTACACGGCTGAGGTATTTTCAATTCCTG--TTCTTTCAAATTA-A-GTTTC-AAAAAAAACCA
* *
80844082 ACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTGTT-AGTTTATATTT
188 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCGCACGCTGAGGTATT-TTCAATTTATATTT
80844146 TTCAA-A-
252 TTCAATAT
80844152 AAAAA-CAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACACTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGG-CACACTGAGGTATTTTCAATTT
** * * * * *
80844215 TTGCTTTTTAATTTTTGTTTTTCAAGAAAATCAATCCATATTGCAAGAGGTGAGTTGAGCCTTGG
65 CCGCTTTTCAACTTATGCTTTTCAAGAAAATCAATCCATATTGCAAGAGGTGAGTTGAGCCTAGG
* *
80844280 TTCACGTGCTGAGGTATTTTCAATTTCTGTTCTTTCAAATTAAGTTTCAAAAAAAACCAACTCAT
130 TACACG-GCTGAGGTATTTTCAATTCCTGTTCTTTCAAATTAAGTTTCAAAAAAAACCAACTCAT
* *
80844345 ATTCCGAGAGGTAAGTTGAGCCT
194 ATTGCGAGAGGTGAGTTGAGCCT
80844368 TGGCTCACGT
Statistics
Matches: 191, Mismatches: 19, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
257 37 0.19
258 4 0.02
259 6 0.03
260 112 0.59
261 12 0.06
262 20 0.10
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (259 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACACTGAGGTATTTTCAATTTC
CGCTTTTCAACTTATGCTTTTCAAGAAAATCAATCCATATTGCAAGAGGTGAGTTGAGCCTAGGT
ACACGGCTGAGGTATTTTCAATTCCTGTTCTTTCAAATTAAGTTTCAAAAAAAACCAACTCATAT
TGCGAGAGGTGAGTTGAGCCTCAGGTCGCACGCTGAGGTATTTTCAATTTATATTTTTCAATAT
Found at i:80844355 original size:91 final size:88
Alignment explanation
Indices: 80844144--80844406 Score: 282
Period size: 91 Copynumber: 2.9 Consensus size: 88
80844134 TAGTTTATAT
* * *
80844144 TTTTCAAAAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC--ACTGAGGTATT
1 TTTTCAAAAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGTCACGTGCTGAGGTATT
* * **
80844207 TTCAATTTTTGCTTTTTAATTTTTG
65 TTCAATTTCTG-TTTTTAAATTAAG
* * *
80844232 TTTTTCAAGAAAATCAA-TCCATATTGCAAGAGGTGAGTTGAGCCTTGGTTCACGTGCTGAGGTA
1 -TTTTCAAAAAAAACAACT-CATATTGCGAGAGGTGAGTTGAGCCTTGG-TCACGTGCTGAGGTA
80844296 TTTTCAATTTCTGTTCTTTCAAATTAAG
63 TTTTCAATTTCTGTT-TTT-AAATTAAG
* * *
80844324 -TTTCAAAAAAAACCAACTCATATTCCGAGAGGTAAGTTGAGCCTTGGCTCACGTGCTGAGCTAT
1 TTTTCAAAAAAAA-CAACTCATATTGCGAGAGGTGAGTTGAGCCTTGG-TCACGTGCTGAGGTAT
* *
80844388 TTTCAATTGCTGTTATTAA
64 TTTCAATTTCTGTTTTTAA
80844407 TGTCTGTTTT
Statistics
Matches: 147, Mismatches: 19, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
88 3 0.02
89 44 0.30
90 14 0.10
91 80 0.54
92 6 0.04
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (88 bp):
TTTTCAAAAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGTCACGTGCTGAGGTATTT
TCAATTTCTGTTTTTAAATTAAG
Found at i:80846234 original size:3 final size:3
Alignment explanation
Indices: 80846199--80846290 Score: 57
Period size: 3 Copynumber: 31.7 Consensus size: 3
80846189 ATTTATTTAT
* * * * * *
80846199 TTA TT- TTA TTT TTA TT- TT- TTA ATA TTG TTA TTA TTA GTC TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
80846244 TTA TTA ATA CTA TTA TT- TCTA TTA TTA TTA TTG TTA TTA TTA ATA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
80846289 TT
1 TT
80846291 CTGGTTATTA
Statistics
Matches: 66, Mismatches: 19, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
2 7 0.11
3 58 0.88
4 1 0.02
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:80846618 original size:22 final size:21
Alignment explanation
Indices: 80846579--80846643 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
80846569 TTTTCTTTTA
80846579 ATATTTTATATATTATTATGTAC
1 ATATTTT-TATA-TATTATGTAC
* *
80846602 ATATTTTGATATCATTA-GTTAT
1 ATATTTTTATAT-ATTATG-TAC
80846624 ATATTTTTATATATTATGTA
1 ATATTTTTATATATTATGTA
80846644 TATTTCTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
21 8 0.22
22 21 0.58
23 7 0.19
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (21 bp):
ATATTTTTATATATTATGTAC
Found at i:80846689 original size:26 final size:29
Alignment explanation
Indices: 80846642--80846694 Score: 76
Period size: 26 Copynumber: 1.9 Consensus size: 29
80846632 ATATATTATG
*
80846642 TATATTTCTTTTACTATTTCATGTATATA
1 TATATTTCTTTTACTATCTCATGTATATA
80846671 TATATTT-TTTT-C-ATCTCATGTATA
1 TATATTTCTTTTACTATCTCATGTATA
80846695 AATTTTTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 11 0.48
27 1 0.04
28 4 0.17
29 7 0.30
ACGTcount: A:0.26, C:0.11, G:0.04, T:0.58
Consensus pattern (29 bp):
TATATTTCTTTTACTATCTCATGTATATA
Found at i:80847006 original size:3 final size:3
Alignment explanation
Indices: 80846944--80846991 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
80846934 CGTATGCATC
80846944 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
80846992 GTATATGTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:80847019 original size:10 final size:10
Alignment explanation
Indices: 80847004--80847028 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
80846994 ATATGTTTAT
80847004 TATATATGTA
1 TATATATGTA
80847014 TATATATGTA
1 TATATATGTA
80847024 TATAT
1 TATAT
80847029 TTTTTAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (10 bp):
TATATATGTA
Found at i:80847019 original size:23 final size:23
Alignment explanation
Indices: 80846953--80847022 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 23
80846943 CTTATTATTA
*
80846953 TTATTATTATTATTATTATTAT-T
1 TTATTATTATTATTAGTA-TATGT
80846976 ATTATTATTATTATTAGTATATGT
1 -TTATTATTATTATTAGTATATGT
80847000 TTATTATATATGTA-TA-TATATGT
1 TTATTAT-TAT-TATTAGTATATGT
80847023 ATATATTTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
23 17 0.40
24 23 0.55
25 2 0.05
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (23 bp):
TTATTATTATTATTAGTATATGT
Found at i:80850760 original size:24 final size:22
Alignment explanation
Indices: 80850713--80850760 Score: 60
Period size: 24 Copynumber: 2.1 Consensus size: 22
80850703 ACCATGGTGG
80850713 AATTGCACTTAAGGCTTGGGTA
1 AATTGCACTTAAGGCTTGGGTA
* *
80850735 AATTGCATGTTAAGGACTTGGTTA
1 AATTGCA-CTTAAGG-CTTGGGTA
80850759 AA
1 AA
80850761 CACTAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 7 0.32
23 6 0.27
24 9 0.41
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.33
Consensus pattern (22 bp):
AATTGCACTTAAGGCTTGGGTA
Found at i:80858324 original size:26 final size:25
Alignment explanation
Indices: 80858247--80858330 Score: 109
Period size: 25 Copynumber: 3.4 Consensus size: 25
80858237 CTGGAGGCCT
80858247 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
**
80858271 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
*
80858296 AGCCCTTTTCAATAAACTTGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
80858322 AGCCCTTTT
1 AGCCCTTTT
80858331 GCACTTCCTC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
23 5 0.10
24 5 0.10
25 32 0.62
26 10 0.19
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:80858413 original size:11 final size:11
Alignment explanation
Indices: 80858397--80858435 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
80858387 GCATTTCAAA
80858397 CATATCATGTG
1 CATATCATGTG
*
80858408 CATATCA--TA
1 CATATCATGTG
80858417 CATATCATGTG
1 CATATCATGTG
80858428 CATATCAT
1 CATATCAT
80858436 ATCAATCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 8 0.33
11 16 0.67
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (11 bp):
CATATCATGTG
Found at i:80858435 original size:20 final size:20
Alignment explanation
Indices: 80858380--80858454 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
80858370 TTATGAATAC
* *
80858380 ATCATGTGCATTTCAAACAT
1 ATCATGTGCATATCATACAT
80858400 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
80858420 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
80858440 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
80858455 TCCAACGTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
18 8 0.15
20 42 0.81
21 2 0.04
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:80858452 original size:9 final size:10
Alignment explanation
Indices: 80858397--80858453 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
80858387 GCATTTCAAA
80858397 CATATCATGT
1 CATATCATGT
*
80858407 GCATATCAT-A
1 -CATATCATGT
80858417 CATATCATGT
1 CATATCATGT
*
80858427 GCATATCATAT
1 -CATATCATGT
80858438 CA-ATCATGT
1 CATATCATGT
80858447 -ATATCAT
1 CATATCAT
80858454 ATCCAACGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (10 bp):
CATATCATGT
Found at i:80866389 original size:26 final size:26
Alignment explanation
Indices: 80866318--80866440 Score: 205
Period size: 26 Copynumber: 4.8 Consensus size: 26
80866308 CTCTTTTAAT
80866318 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
80866343 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
80866368 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
80866394 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
80866420 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
80866441 GCACTTCCTC
Statistics
Matches: 94, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
25 35 0.37
26 59 0.63
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:80866516 original size:20 final size:20
Alignment explanation
Indices: 80866491--80866546 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
80866481 TATGAATACC
*
80866491 TCATGTGCATTTCATA-CATA
1 TCATGTGCATATCATATCA-A
80866511 TCATGTGCATATCATATCAA
1 TCATGTGCATATCATATCAA
80866531 TCATGT--ATATCATATC
1 TCATGTGCATATCATATC
80866547 CCACGTATCA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 22 0.65
21 2 0.06
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (20 bp):
TCATGTGCATATCATATCAA
Found at i:80869965 original size:34 final size:34
Alignment explanation
Indices: 80869917--80869985 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
80869907 ATTAAGAGAG
80869917 ATAGCAGTGTTTGACGGAATAGTGGATGTAGTCA
1 ATAGCAGTGTTTGACGGAATAGTGGATGTAGTCA
*
80869951 ATAGTAGTGTTTGACGGAATAGTGGATGTAGTCA
1 ATAGCAGTGTTTGACGGAATAGTGGATGTAGTCA
80869985 A
1 A
80869986 AGATCTCAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.30, C:0.07, G:0.32, T:0.30
Consensus pattern (34 bp):
ATAGCAGTGTTTGACGGAATAGTGGATGTAGTCA
Found at i:80871537 original size:26 final size:27
Alignment explanation
Indices: 80871508--80871563 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
80871498 TACCAGAGGT
* *
80871508 AAAATTGTTAAAATTTTA-TCGGGGTA
1 AAAATCGTTAAAATTTTAGTAGGGGTA
80871534 AAAATCGTTAAAATTTTAGTAGGGGTA
1 AAAATCGTTAAAATTTTAGTAGGGGTA
80871561 AAA
1 AAA
80871564 TAGAGAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.43, C:0.04, G:0.20, T:0.34
Consensus pattern (27 bp):
AAAATCGTTAAAATTTTAGTAGGGGTA
Found at i:80871939 original size:30 final size:30
Alignment explanation
Indices: 80871904--80871965 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
80871894 GGAGAGATTG
80871904 TCACTCTACAGAAAACTAGAGAGAATTTAT
1 TCACTCTACAGAAAACTAGAGAGAATTTAT
*
80871934 TCACTCTACCGAAAACTAGAGAGAATTTAT
1 TCACTCTACAGAAAACTAGAGAGAATTTAT
80871964 TC
1 TC
80871966 TCAACTATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.27
Consensus pattern (30 bp):
TCACTCTACAGAAAACTAGAGAGAATTTAT
Found at i:80888148 original size:16 final size:16
Alignment explanation
Indices: 80888129--80888163 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
80888119 TTCATTTCCC
80888129 TTAAGTATTTAGGGGT
1 TTAAGTATTTAGGGGT
80888145 TTAAGTATTTAGGGGT
1 TTAAGTATTTAGGGGT
80888161 TTA
1 TTA
80888164 GTTCATACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.46
Consensus pattern (16 bp):
TTAAGTATTTAGGGGT
Found at i:80894725 original size:15 final size:15
Alignment explanation
Indices: 80894705--80894734 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80894695 AATAATAATT
80894705 ATAATAGTAAAAATA
1 ATAATAGTAAAAATA
*
80894720 ATAATAGTAATAATA
1 ATAATAGTAAAAATA
80894735 GCTAAGTAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
ATAATAGTAAAAATA
Found at i:80894829 original size:15 final size:15
Alignment explanation
Indices: 80894809--80894839 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
80894799 AAAAGTATTA
80894809 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
80894824 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
80894839 A
1 A
80894840 GAAAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (15 bp):
ATAATAGTAATAAAT
Found at i:80894926 original size:16 final size:17
Alignment explanation
Indices: 80894907--80894944 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
80894897 AAAAGGAAAT
80894907 AATAATATGGTAA-AAA
1 AATAATATGGTAATAAA
*
80894923 AATAATATGTTAATAAA
1 AATAATATGGTAATAAA
80894940 AATAA
1 AATAA
80894945 CAGTAGTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (17 bp):
AATAATATGGTAATAAA
Found at i:80894929 original size:22 final size:21
Alignment explanation
Indices: 80894882--80894923 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
80894872 TGTTAATATC
80894882 AATAATAATATATAAAAAAGGA
1 AATAATAATATATAAAAAA-GA
*
80894904 AATAATAATATGGTAAAAAA
1 AATAATAATAT-ATAAAAAA
80894924 ATAATATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.24
Consensus pattern (21 bp):
AATAATAATATATAAAAAAGA
Found at i:80894960 original size:3 final size:3
Alignment explanation
Indices: 80894954--80895013 Score: 52
Period size: 3 Copynumber: 20.3 Consensus size: 3
80894944 ACAGTAGTAG
* * * *
80894954 TAA TAA TAA -AA -AA GTAA TAG TAA TAA AAA TAA AAA TAA AAA TAA
1 TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
80894998 TAA TAG TAA TAA TAA T
1 TAA TAA TAA TAA TAA T
80895014 GTTAATGGCA
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
2 4 0.09
3 39 0.87
4 2 0.04
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:80894999 original size:41 final size:43
Alignment explanation
Indices: 80894917--80895002 Score: 104
Period size: 41 Copynumber: 2.0 Consensus size: 43
80894907 AATAATATGG
* * ** *
80894917 TAAAAAAATAATATGTTAATAAAAATAACAGTAGTAGTAATAA
1 TAAAAAAATAATATGTTAATAAAAATAAAAATAAAAATAATAA
*
80894960 TAAAAAAGTAATA-G-TAATAAAAATAAAAATAAAAATAATAA
1 TAAAAAAATAATATGTTAATAAAAATAAAAATAAAAATAATAA
80895001 TA
1 TA
80895003 GTAATAATAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
41 24 0.65
42 1 0.03
43 12 0.32
ACGTcount: A:0.66, C:0.01, G:0.07, T:0.26
Consensus pattern (43 bp):
TAAAAAAATAATATGTTAATAAAAATAAAAATAAAAATAATAA
Found at i:80896081 original size:19 final size:19
Alignment explanation
Indices: 80896057--80896094 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
80896047 TTTTGGGCTG
80896057 TTGGGTATTTTAGTTTGGT
1 TTGGGTATTTTAGTTTGGT
80896076 TTGGGTATTTTAGTTTGGT
1 TTGGGTATTTTAGTTTGGT
80896095 GGGCCGGGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.32, T:0.58
Consensus pattern (19 bp):
TTGGGTATTTTAGTTTGGT
Found at i:80896430 original size:26 final size:26
Alignment explanation
Indices: 80896401--80896508 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
80896391 TGATACAAAT
*
80896401 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80896427 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80896453 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80896479 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80896505 TGAT
1 TGAT
80896509 TGGAATTTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80902239 original size:20 final size:22
Alignment explanation
Indices: 80902216--80902262 Score: 53
Period size: 24 Copynumber: 2.1 Consensus size: 22
80902206 TGAATAATGC
80902216 ATAA-GAAC-TTAAAATAAATA
1 ATAAGGAACTTTAAAATAAATA
*
80902236 ATAAAAGGAGCTTTAAAATAAATA
1 AT--AAGGAACTTTAAAATAAATA
80902260 ATA
1 ATA
80902263 TATAAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
20 2 0.09
22 3 0.14
23 3 0.14
24 14 0.64
ACGTcount: A:0.62, C:0.04, G:0.09, T:0.26
Consensus pattern (22 bp):
ATAAGGAACTTTAAAATAAATA
Found at i:80904258 original size:44 final size:44
Alignment explanation
Indices: 80904161--80904273 Score: 140
Period size: 44 Copynumber: 2.5 Consensus size: 44
80904151 TTTAATCTAT
* **
80904161 TCCACTGCAACTTCAGGGAAATAAGATCCTATGTCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGA-CCTATGTCTTCAACCTGC
*
80904206 TCCACTGCAACTTTAGGGAGATAAGA-CT-TGTAACTTCAACCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACCTATGT--CTTCAACCTGC
*
80904250 TCCACTGCAACTTCAAGGAGATAA
1 TCCACTGCAACTTCAGGGAGATAA
80904274 TGTATCACCC
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
42 3 0.05
43 2 0.03
44 31 0.52
45 24 0.40
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGACCTATGTCTTCAACCTGC
Found at i:80905640 original size:46 final size:47
Alignment explanation
Indices: 80905534--80905655 Score: 140
Period size: 46 Copynumber: 2.6 Consensus size: 47
80905524 TGTCTTCGAC
** * *
80905534 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
*
80905584 ATAGG-CTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 AT-GGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
80905630 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
80905656 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
45 2 0.03
46 32 0.50
50 28 0.44
51 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:80906045 original size:16 final size:16
Alignment explanation
Indices: 80906024--80906058 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
80906014 GCCCCTAAAT
80906024 TTTCACATATTTGCAC
1 TTTCACATATTTGCAC
80906040 TTTCACATATTTGCAC
1 TTTCACATATTTGCAC
80906056 TTT
1 TTT
80906059 TGCCTCAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.23, C:0.23, G:0.06, T:0.49
Consensus pattern (16 bp):
TTTCACATATTTGCAC
Found at i:80906995 original size:44 final size:45
Alignment explanation
Indices: 80906896--80907013 Score: 132
Period size: 44 Copynumber: 2.6 Consensus size: 45
80906886 TGGCTTCGAT
* * **
80906896 CTGCTTCACTGCAACTTCAGGGAGATAAGATCCGTTATCTTCAGT
1 CTGCTCCACTACAACTTCAGGGAGATAAGATCCGTTATCTTCAAC
* * *
80906941 TTGCTCCACTACAATTTCAGGGAGATAAGA-CTTGTTA-CTTCAAC
1 CTGCTCCACTACAACTTCAGGGAGATAAGATC-CGTTATCTTCAAC
* *
80906985 CTGCTCCACTATAACTTCAGAGAGATAAG
1 CTGCTCCACTACAACTTCAGGGAGATAAG
80907014 GTTTGTTTTG
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
44 31 0.51
45 30 0.49
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (45 bp):
CTGCTCCACTACAACTTCAGGGAGATAAGATCCGTTATCTTCAAC
Found at i:80907123 original size:122 final size:122
Alignment explanation
Indices: 80906904--80907141 Score: 300
Period size: 122 Copynumber: 2.0 Consensus size: 122
80906894 ATCTGCTTCA
** * * *
80906904 CTGCAACTTCAGGGAGATAAGATCCGTTATCTTCAGTTTGCTCCACTACAATTTCAGGGAGATAA
1 CTGCAACTTCAAAGAGATAAGATCAGCTATCTTCAGTCTGCTCCACTACAATTTCAGGGAGATAA
* * * *
80906969 GACTTGTTACTTCAACCTGCTCCACTATAACTTCA-GAGAGATAAGGTTTGTTTTGAT
66 GACATGTGACTTCAACCTACTCCACTACAACTTCAGGA-AGATAAGGTTTGTTTTGAT
* * * *
80907026 CTGCAACTTCAAAGAGATAAGATCAGCTGTCTTCAGTCTGCTCCTCTGCAACTTT-AGGTAGATA
1 CTGCAACTTCAAAGAGATAAGATCAGCTATCTTCAGTCTGCTCCACTACAA-TTTCAGGGAGATA
* * *
80907090 AGACATGTGGCTTTAACCTACTCCACTGCAACTTCAGGAAGATAAGGTTTGT
65 AGACATGTGACTTCAACCTACTCCACTACAACTTCAGGAAGATAAGGTTTGT
80907142 GATTTGTAGC
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
122 93 0.95
123 5 0.05
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (122 bp):
CTGCAACTTCAAAGAGATAAGATCAGCTATCTTCAGTCTGCTCCACTACAATTTCAGGGAGATAA
GACATGTGACTTCAACCTACTCCACTACAACTTCAGGAAGATAAGGTTTGTTTTGAT
Found at i:80915230 original size:19 final size:20
Alignment explanation
Indices: 80915205--80915252 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
80915195 AGGTCTTTTC
* * *
80915205 AATGAAATTTAATGCATATG
1 AATGAAATGTAACGCAAATG
80915225 -ATGAAATGTAACGCAAATG
1 AATGAAATGTAACGCAAATG
80915244 AATGAAATG
1 AATGAAATG
80915253 AATGCTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.48, C:0.06, G:0.19, T:0.27
Consensus pattern (20 bp):
AATGAAATGTAACGCAAATG
Found at i:80929106 original size:93 final size:93
Alignment explanation
Indices: 80928994--80929165 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
80928984 CGCCCATAAG
* *
80928994 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
80929059 ACGAGCTCGGATGCCTAGTTTCATCTCA
66 ACGAGCTCGGATGCCTAGTTTCATCTCA
* *
80929087 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
*
80929152 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
80929166 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTTCATCTCA
Found at i:80929162 original size:46 final size:46
Alignment explanation
Indices: 80928987--80929162 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
80928977 TGTAACCCGC
* *
80928987 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
* *
80929033 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-TCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCACAT
* * *
80929083 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
* *
80929126 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
80929163 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.58
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
Found at i:80933919 original size:20 final size:22
Alignment explanation
Indices: 80933896--80933942 Score: 53
Period size: 24 Copynumber: 2.1 Consensus size: 22
80933886 TGAATAATGC
80933896 ATAA-GAAC-TTAAAATAAATA
1 ATAAGGAACTTTAAAATAAATA
*
80933916 ATAAAAGGAGCTTTAAAATAAATA
1 AT--AAGGAACTTTAAAATAAATA
80933940 ATA
1 ATA
80933943 TATAAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
20 2 0.09
22 3 0.14
23 3 0.14
24 14 0.64
ACGTcount: A:0.62, C:0.04, G:0.09, T:0.26
Consensus pattern (22 bp):
ATAAGGAACTTTAAAATAAATA
Found at i:80943472 original size:19 final size:17
Alignment explanation
Indices: 80943430--80943472 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 17
80943420 AAATGTTTCG
80943430 GAAT-GAAATAAAATGT
1 GAATGGAAATAAAATGT
80943446 GAATTGGAAATTAAAATAGT
1 GAA-TGGAAA-TAAAAT-GT
80943466 GAATGGA
1 GAATGGA
80943473 TAAGTGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 3 0.13
17 1 0.04
18 4 0.17
19 10 0.43
20 5 0.22
ACGTcount: A:0.51, C:0.00, G:0.23, T:0.26
Consensus pattern (17 bp):
GAATGGAAATAAAATGT
Found at i:80945687 original size:45 final size:45
Alignment explanation
Indices: 80945573--80945749 Score: 204
Period size: 45 Copynumber: 4.0 Consensus size: 45
80945563 ATGCTATCTC
* * *
80945573 ATATCGATGCC-ACTGTCCCAGATAGGGTCTTACA-GAAATCA-A-
1 ATATCGATGCCAAC-GTCCCAGACATGGTCTTACACGAAAACACAT
* * * * *
80945615 ATA-CGATGCCGATGTCCCGGACATGGTCTTACTC-ATAACCACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGA-AAACACAT
* *
80945659 ATATCGATGCCAACGTCCTAGACGTGGTCTTACACGAAAACACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAAACACAT
80945704 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAAACACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAAACACAT
80945749 A
1 A
80945750 GCATAGTCCT
Statistics
Matches: 113, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
41 24 0.21
42 8 0.07
43 1 0.01
44 3 0.03
45 76 0.67
46 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.23
Consensus pattern (45 bp):
ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAAACACAT
Found at i:80945688 original size:86 final size:90
Alignment explanation
Indices: 80945573--80945736 Score: 214
Period size: 86 Copynumber: 1.9 Consensus size: 90
80945563 ATGCTATCTC
* * * *
80945573 ATATCGATGCCACTGTCCCAGATAGGGTCTTACA-GAAATCA-A-ATA-CGATGCCGATGTCCCG
1 ATATCGATGCCACTGTCCCAGATAGGGTCTTACACGAAAACACATATATCGATGCCAACGTCCCA
80945634 GACATGGTCTTACTCATAACCACAT
66 GACATGGTCTTACTCATAACCACAT
* *
80945659 ATATCGATGCCAAC-GTCCTAGA-CGTGGTCTTACACGAAAACACATATATCGATGCCAACGTCC
1 ATATCGATGCC-ACTGTCCCAGATAG-GGTCTTACACGAAAACACATATATCGATGCCAACGTCC
80945722 CAGACATGGTCTTAC
64 CAGACATGGTCTTAC
80945737 ACGAAAACAC
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
85 1 0.02
86 27 0.41
87 8 0.12
88 1 0.02
89 3 0.05
90 26 0.39
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (90 bp):
ATATCGATGCCACTGTCCCAGATAGGGTCTTACACGAAAACACATATATCGATGCCAACGTCCCA
GACATGGTCTTACTCATAACCACAT
Found at i:80946315 original size:15 final size:15
Alignment explanation
Indices: 80946292--80946322 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
80946282 TCAAAAATTC
80946292 CAATACAAAACATAT
1 CAATACAAAACATAT
*
80946307 CAATCCAAAACATAT
1 CAATACAAAACATAT
80946322 C
1 C
80946323 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:80946854 original size:14 final size:15
Alignment explanation
Indices: 80946837--80946865 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
80946827 TTACAAAAAT
80946837 TTCACACAT-ATAAA
1 TTCACACATAATAAA
80946851 TTCACACATAATAAA
1 TTCACACATAATAAA
80946866 CACAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:80951543 original size:12 final size:13
Alignment explanation
Indices: 80951528--80951560 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
80951518 ATATGTGGCC
80951528 ATATATATATA-A
1 ATATATATATACA
80951540 ATATATATATACA
1 ATATATATATACA
80951553 A-ATATATA
1 ATATATATA
80951561 CATATTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 18 0.90
13 2 0.10
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (13 bp):
ATATATATATACA
Done.