Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 248 of 325
Found at i:80951545 original size:14 final size:14
Alignment explanation
Indices: 80951528--80951565 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
80951518 ATATGTGGCC
80951528 ATATATATATAAAT
1 ATATATATATAAAT
*
80951542 ATATATATACAAAT
1 ATATATATATAAAT
*
80951556 ATATACATAT
1 ATATATATAT
80951566 TTTTTAAGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (14 bp):
ATATATATATAAAT
Found at i:80959570 original size:26 final size:25
Alignment explanation
Indices: 80959500--80959577 Score: 68
Period size: 26 Copynumber: 3.1 Consensus size: 25
80959490 TATATAACAA
* *
80959500 GAAGCTCATAAGAGCC-ATAATCAG
1 GAAGCTCAAAAGAGCCTTTAATCAG
* * * *
80959524 GAAGTTTAGAAAAAGCTTTTAATCAG
1 GAAGCTCA-AAAGAGCCTTTAATCAG
*
80959550 GAAGCTCACAAAGAGCCTTTAATTAG
1 GAAGCTCA-AAAGAGCCTTTAATCAG
80959576 GA
1 GA
80959578 GCTTTAGATA
Statistics
Matches: 40, Mismatches: 12, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
24 6 0.15
25 5 0.12
26 29 0.73
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (25 bp):
GAAGCTCAAAAGAGCCTTTAATCAG
Found at i:80959867 original size:20 final size:21
Alignment explanation
Indices: 80959842--80959881 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
80959832 CTCTTAAAAC
*
80959842 AGGGC-ACATGCCAGTGTGGA
1 AGGGCAACACGCCAGTGTGGA
*
80959862 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCAGTGTGG
80959882 TCATTATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.25, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCAGTGTGGA
Found at i:80961201 original size:46 final size:48
Alignment explanation
Indices: 80960970--80961286 Score: 277
Period size: 46 Copynumber: 6.7 Consensus size: 48
80960960 GGTATAATGT
* * *
80960970 CGATGTCATGTCCCAGACATGGTCTTACACT-GACTATCGAAAT-T-GAAGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTAG-C--TCTACATCTCGAGGC
* * *
80961019 CGATGCCATGTCTCAGACATGGTCTTACACTAGCTCTCACATATCTG-TGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTAGCTCT-ACATCTC-GAGGC
*
80961069 CGATGCCATGTCCCAGACATGGTCTTACACT-G-AC-ACATCTCGTA-GC
1 CGATG-CATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCG-AGGC
* * * * *
80961115 TGATGCATGTCCTAGACAT-ATCATACACTGGCT-TACATCTCGAGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCGAGGC
* *
80961161 CGATGCATGTCCCAGACAT-GTCTTACACTAGCTCTA-ATCTCAATGC
1 CGATGCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCGAGGC
* * *
80961207 CGATGGCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGA
1 CGAT-GCATGTCCCAGACATGGTCTTACACTAGCTCTACAT-CTCGAGGC
80961255 CGATGCATGTCCCAGACAT-GTCTTACACTAGC
1 CGATGCATGTCCCAGACATGGTCTTACACTAGC
80961287 ACACAAATAA
Statistics
Matches: 227, Mismatches: 25, Indels: 35
0.79 0.09 0.12
Matches are distributed among these distances:
44 8 0.04
45 16 0.07
46 75 0.33
47 34 0.15
48 27 0.12
49 33 0.15
50 33 0.15
51 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCGAGGC
Found at i:80961282 original size:140 final size:141
Alignment explanation
Indices: 80960970--80961283 Score: 354
Period size: 140 Copynumber: 2.2 Consensus size: 141
80960960 GGTATAATGT
*
80960970 CGATGTCATGTCCCAGACATGGTCTTACACTGACTATCGAAATTGAAGCCGATGCCATGTCTCAG
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTATC-AAATTGAAGCCGATGCCATGTCCCAG
**
80961035 ACATGGTCTTACACTAGCTCTCACATATCTGTGCCGATGCCATGTCCCAGACATGGTCTTACACT
63 ACATGGTCTTACACTAGCTCTCACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACT
*
80961100 GACACATCTCGTAG
128 GACACATATCGTAG
* * * * * *
80961114 CTGATGCATGTCCTAGACATATCATACACTGGCT-T-ACATCTCGAGGCCGATG-CATGTCCCAG
1 C-GATGCATGTCCCAGACATGTCTTACACTGACTATCAAAT-T-GAAGCCGATGCCATGTCCCAG
* *
80961176 ACAT-GTCTTACACTAGCTCT-A-ATCTCAATGCCGATGGCATGTCCCAGACATGGTCTTACACT
63 ACATGGTCTTACACTAGCTCTCACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACT
* * *
80961238 AGCTCTCATAAT-GTGG
128 -G-ACACAT-ATCGTAG
80961254 ACGATGCATGTCCCAGACATGTCTTACACT
1 -CGATGCATGTCCCAGACATGTCTTACACT
80961284 AGCACACAAA
Statistics
Matches: 145, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
138 37 0.26
139 2 0.01
140 51 0.35
141 16 0.11
142 10 0.07
143 11 0.08
144 14 0.10
145 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (141 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACTATCAAATTGAAGCCGATGCCATGTCCCAGACA
TGGTCTTACACTAGCTCTCACATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGAC
ACATATCGTAG
Found at i:80961286 original size:94 final size:94
Alignment explanation
Indices: 80960970--80961283 Score: 283
Period size: 94 Copynumber: 3.3 Consensus size: 94
80960960 GGTATAATGT
* * * *
80960970 CGATGTCATGTCCCAGACATGGTCTTACACTGACTATCGAAAT-TGAA-GCCGATGCCATGTCTC
1 CGATGCCATGTCCCAGACATGGTCTTACACTG-C--TC--AATCTCAATGCCGATGGCATGTCCC
* *
80961033 AGACATGGTCTTACACTAGCTCTCACATATCTGTGC
61 AGACATGGTCTTACACTAGCTCTCATA-ATGTG-GC
* * * *
80961069 CGATGCCATGTCCCAGACATGGTCTTACACTG-ACACATCTC-GTAGCTGAT-GCATGTCCTAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGCTCA-ATCTCAAT-GCCGATGGCATGTCCCAGA
* * * * *
80961131 CAT-ATCATACACTGGCT-TACAT-CTCGAGGC
64 CATGGTCTTACACTAGCTCT-CATAAT-GTGGC
80961161 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTAATCTCAATGCCGATGGCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCTC-AATCTCAATGCCGATGGCATGTCCCAGA
*
80961224 CATGGTCTTACACTAGCTCTCATAATGTGGA
64 CATGGTCTTACACTAGCTCTCATAATGTGGC
80961255 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
80961284 AGCACACAAA
Statistics
Matches: 176, Mismatches: 25, Indels: 33
0.75 0.11 0.14
Matches are distributed among these distances:
90 10 0.06
91 15 0.09
92 19 0.11
93 19 0.11
94 61 0.35
95 16 0.09
96 5 0.03
99 31 0.18
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGCTCAATCTCAATGCCGATGGCATGTCCCAGACA
TGGTCTTACACTAGCTCTCATAATGTGGC
Found at i:80963265 original size:56 final size:56
Alignment explanation
Indices: 80963174--80963296 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
80963164 GAGATTGGCG
* * *
80963174 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
80963231 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
80963286 CTGAGTGTGCG
1 CTAAGTGTGCG
80963297 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:80963283 original size:27 final size:28
Alignment explanation
Indices: 80963174--80963296 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
80963164 GAGATTGGCG
* * * *
80963174 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
80963203 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
80963231 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
80963259 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
80963286 CTGAGTGTGCG
1 CTAAGTGTGCG
80963297 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:80963307 original size:27 final size:27
Alignment explanation
Indices: 80963199--80963309 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
80963189 TAAATTGTAC
* * *
80963199 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
80963227 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
80963255 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
80963282 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
80963309 A
1 A
80963310 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:80970072 original size:37 final size:37
Alignment explanation
Indices: 80970011--80970089 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
80970001 TTATTACGAA
* * * *
80970011 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
*
80970048 GTCTTACCCGAACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
80970085 GTCTT
1 GTCTT
80970090 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
Found at i:80972019 original size:13 final size:13
Alignment explanation
Indices: 80972001--80972025 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80971991 TACTAAATTT
80972001 TCATGGATTCAAG
1 TCATGGATTCAAG
80972014 TCATGGATTCAA
1 TCATGGATTCAA
80972026 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:80975758 original size:56 final size:56
Alignment explanation
Indices: 80975667--80975789 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
80975657 GAGATTGGCG
* * *
80975667 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
80975724 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
80975779 CTGAGTGTGCG
1 CTAAGTGTGCG
80975790 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:80975776 original size:27 final size:28
Alignment explanation
Indices: 80975667--80975789 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
80975657 GAGATTGGCG
* * * *
80975667 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
80975696 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
80975724 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
80975752 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
80975779 CTGAGTGTGCG
1 CTAAGTGTGCG
80975790 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:80975800 original size:27 final size:27
Alignment explanation
Indices: 80975692--80975802 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
80975682 TAAATTGTAC
* * *
80975692 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
80975720 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
80975748 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
80975775 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
80975802 A
1 A
80975803 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:80977493 original size:27 final size:24
Alignment explanation
Indices: 80977438--80977486 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
80977428 TAGATTCTGT
80977438 AATTCTTGATGTAAAATAATAGAA
1 AATTCTTGATGTAAAATAATAGAA
80977462 AATTCTTGATGTAAAATAATAGAA
1 AATTCTTGATGTAAAATAATAGAA
80977486 A
1 A
80977487 TTCATTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.04, G:0.12, T:0.33
Consensus pattern (24 bp):
AATTCTTGATGTAAAATAATAGAA
Found at i:80979461 original size:40 final size:40
Alignment explanation
Indices: 80979406--80979657 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
80979396 CGGATGATAA
* *
80979406 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
80979446 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
80979486 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
80979526 CC-GG----G-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
80979560 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
80979600 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
80979640 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80979658 TACTTGGTTT
Statistics
Matches: 198, Mismatches: 6, Indels: 17
0.90 0.03 0.08
Matches are distributed among these distances:
34 31 0.16
35 3 0.02
39 20 0.10
40 143 0.72
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:80979565 original size:74 final size:77
Alignment explanation
Indices: 80979406--80979657 Score: 345
Period size: 74 Copynumber: 3.2 Consensus size: 77
80979396 CGGATGATAA
* *
80979406 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGCCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGG---AGCCCCGAAGGCATTT
80979470 GTGCGAGTTACTATAT
62 GTGCGAGTTACTATAT
80979486 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-GG-G-CCCGAAGGCATTTGTGC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGAGCCCCGAAGGCATTTGTGC
80979548 GAGTTACTATAT
66 GAGTTACTATAT
*
80979560 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGG---AGCCCCGAAGGCATTTG
*
80979625 AGCGAG-TAGCTATAT
63 TGCGAGTTA-CTATAT
*
80979640 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80979658 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 4, Indels: 17
0.88 0.02 0.09
Matches are distributed among these distances:
74 71 0.44
75 3 0.02
79 20 0.12
80 65 0.41
81 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGAGCCCCGAAGGCATTTGTGC
GAGTTACTATAT
Found at i:80979617 original size:114 final size:114
Alignment explanation
Indices: 80979417--80979643 Score: 386
Period size: 114 Copynumber: 2.0 Consensus size: 114
80979407 CGGGCTAAGT
*
80979417 CCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT
1 CCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT
*
80979482 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGG
66 ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCCGGG
* *
80979531 CCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 CCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTAC
80979595 TATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGG
65 TATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGG
80979644 CTAAATCCCG
Statistics
Matches: 107, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
113 4 0.04
114 103 0.96
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (114 bp):
CCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT
ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGG
Found at i:80980678 original size:43 final size:43
Alignment explanation
Indices: 80980617--80980703 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
80980607 GTCATATCAT
80980617 ATATGTATAGATTACTTTTCAAGTCTAGTTTGTTTATAAACAA
1 ATATGTATAGATTACTTTTCAAGTCTAGTTTGTTTATAAACAA
*
80980660 ATATGTATAGATTACTTTTCGAGTCTAGTTTGTTTATAAACAA
1 ATATGTATAGATTACTTTTCAAGTCTAGTTTGTTTATAAACAA
80980703 A
1 A
80980704 CGGTATAAGT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.44
Consensus pattern (43 bp):
ATATGTATAGATTACTTTTCAAGTCTAGTTTGTTTATAAACAA
Found at i:80981835 original size:65 final size:65
Alignment explanation
Indices: 80981736--80981878 Score: 180
Period size: 65 Copynumber: 2.2 Consensus size: 65
80981726 CATCAGGATG
* ** **
80981736 CTCACAAAGAGTTGTATTTGTGTTTGCAACATATG-CAGTATCACAACTGATCATAAAACAGGAC
1 CTCACAAAGAGCTGTATTTGTGTCCGCAACATATGCCAG-ATCACAACCAATCATAAAACAGGAC
80981800 A
65 A
* * * * *
80981801 CTCACAAAGAGCTGTGTTTGTGTCCGCAATATATGCCAGATCACAACCAATCATATACCAGGGCA
1 CTCACAAAGAGCTGTATTTGTGTCCGCAACATATGCCAGATCACAACCAATCATAAAACAGGACA
80981866 CTCACAAAGAGCT
1 CTCACAAAGAGCT
80981879 ACGGTAGTCC
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
65 64 0.96
66 3 0.04
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.24
Consensus pattern (65 bp):
CTCACAAAGAGCTGTATTTGTGTCCGCAACATATGCCAGATCACAACCAATCATAAAACAGGACA
Found at i:80987888 original size:32 final size:32
Alignment explanation
Indices: 80987847--80987910 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
80987837 TAAGTTCATA
*
80987847 AACAAATGAATGTCTTTAAATTGAATTATATG
1 AACAAATGAATGCCTTTAAATTGAATTATATG
80987879 AACAAATGAATGCCTTTAAATTGAATTATATG
1 AACAAATGAATGCCTTTAAATTGAATTATATG
80987911 TGCTTACTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (32 bp):
AACAAATGAATGCCTTTAAATTGAATTATATG
Found at i:80991791 original size:46 final size:47
Alignment explanation
Indices: 80991638--80991906 Score: 207
Period size: 46 Copynumber: 5.8 Consensus size: 47
80991628 GTTATTGTTG
* * *
80991638 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATATTATAAG-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-T-TGAGACGAA
* * * *
80991684 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGACGA-A
*
80991732 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGACG-AA
* * * * *
80991778 GCTAGTGTAAGA-CATGTTTGGGACAT-ACATCAG-CTACGAGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-TGAGACGA-A
* * * * * *
80991824 GTTAGTGTAAGACCATATCTGGGACATGGCAT-TGACTTGAGATGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGACG-AA
* *
80991871 G-TCAGTGTCAGATCATGTCTGGGACATGGCATCGGC
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC
80991907 ACCTTACCCA
Statistics
Matches: 184, Mismatches: 26, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
45 3 0.02
46 79 0.43
47 77 0.42
48 25 0.14
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGACGAA
Found at i:80991866 original size:47 final size:46
Alignment explanation
Indices: 80991687--80991902 Score: 165
Period size: 47 Copynumber: 4.6 Consensus size: 46
80991677 TATAAGAGCC
* * *
80991687 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATACG-AGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATTGAC-TCGAGACGTA-AGCT
* *
80991735 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGACGTAAGCT
1 AGTGTAAGACATGTCTGGGACATGGCAT-TGACTCGAGACGTAAGCT
* * * * *
80991781 AGTGTAAGACATGTTTGGGACAT-ACA-TCAGCTACGAGATG-ATAGTT
1 AGTGTAAGACATGTCTGGGACATGGCATTGA-CT-CGAGACGTA-AGCT
* * * *
80991827 AGTGTAAGACCATATCTGGGACATGGCATTGACTTGAGATGTGAG-T
1 AGTGTAAGA-CATGTCTGGGACATGGCATTGACTCGAGACGTAAGCT
*
80991873 CAGTGTCAGATCATGTCTGGGACATGGCAT
1 -AGTGTAAGA-CATGTCTGGGACATGGCAT
80991903 CGGCACCTTA
Statistics
Matches: 138, Mismatches: 20, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
45 3 0.02
46 57 0.41
47 63 0.46
48 13 0.09
49 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATTGACTCGAGACGTAAGCT
Found at i:80996619 original size:3 final size:3
Alignment explanation
Indices: 80996611--80996635 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
80996601 TGTTTATGAA
80996611 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
80996636 GTAATTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:80998576 original size:25 final size:25
Alignment explanation
Indices: 80998546--80998593 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80998536 TTATAATATT
** *
80998546 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
80998571 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
80998594 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:80998732 original size:25 final size:25
Alignment explanation
Indices: 80998704--80998773 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
80998694 GAGGAAGTGC
* *
80998704 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCA
* *
80998729 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCTAGTTTACCA
80998754 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCTAGTT
80998774 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTACCA
Found at i:80998786 original size:24 final size:25
Alignment explanation
Indices: 80998703--80998786 Score: 77
Period size: 25 Copynumber: 3.4 Consensus size: 25
80998693 GGAGGAAGTG
* * *
80998703 CAAAAG-GGCTATGCCCTAGTTTAC
1 CAAAAGAGGCTTTGCCCCAGTTTAT
80998727 CGAAAAG-GGCTTTGCCCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAGTTTAT
*
80998752 CAAAA-AGGGCTTTGCCCTAG-TTAT
1 CAAAAGA-GGCTTTGCCCCAGTTTAT
*
80998776 TAAAAGAGGCT
1 CAAAAGAGGCT
80998787 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
24 17 0.33
25 34 0.67
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAGTTTAT
Found at i:80998797 original size:50 final size:50
Alignment explanation
Indices: 80998704--80998798 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
80998694 GAGGAAGTGC
**
80998704 AAAAGGGCTATGCCCTAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCTAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
80998754 AAAAGGGCTTTGCCCTAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCTAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
80998799 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.26
Consensus pattern (50 bp):
AAAAGGGCTATGCCCTAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:81000177 original size:90 final size:91
Alignment explanation
Indices: 81000075--81000248 Score: 262
Period size: 92 Copynumber: 1.9 Consensus size: 91
81000065 ACCTTATCAA
* *
81000075 TAAGAAGTTC-AAAAAAACAAG-TCTAGAGAAATGTCGAGAAAAATAGCAATTGAATAGCAACAA
1 TAAGAAGTTCAAAAAAAACAAGTTC-AGAGAAATGTCGAGAAAAACAACAATTGAATAGCAACAA
**
81000138 TCAACAATTGCTGAGAAATCTTGCCGG
65 TCAACAATTGAAGAGAAATCTTGCCGG
*
81000165 TAAGAAGTTCAAAAAAAAATAAGTTCAGAGAAATGTCGAGAAAAACAACAATTGAATAGCAACAA
1 TAAGAAGTTC-AAAAAAAACAAGTTCAGAGAAATGTCGAGAAAAACAACAATTGAATAGCAACAA
*
81000230 TCAGCAATTGAAGAGAAAT
65 TCAACAATTGAAGAGAAAT
81000249 TTTTAATTAG
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
90 10 0.13
92 63 0.84
93 2 0.03
ACGTcount: A:0.51, C:0.13, G:0.18, T:0.19
Consensus pattern (91 bp):
TAAGAAGTTCAAAAAAAACAAGTTCAGAGAAATGTCGAGAAAAACAACAATTGAATAGCAACAAT
CAACAATTGAAGAGAAATCTTGCCGG
Found at i:81011002 original size:49 final size:49
Alignment explanation
Indices: 81010872--81011015 Score: 198
Period size: 51 Copynumber: 2.9 Consensus size: 49
81010862 TCTATTGTGA
*
81010872 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAATT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAATT
* * * * ***
81010921 GTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
1 G-G-TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAATT
81010972 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
81011016 TAGCTTCGGC
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
49 39 0.48
50 2 0.02
51 40 0.49
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (49 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAATT
Found at i:81016033 original size:30 final size:30
Alignment explanation
Indices: 81015985--81016042 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
81015975 GTTTTTGACC
* *
81015985 CACATGGCCTAGCCACACGGGTGTGTGGAG
1 CACACGGCCTAGCCACACGGGCGTGTGGAG
* *
81016015 CACACGGCCTGGCTACACGGGCGTGTGG
1 CACACGGCCTAGCCACACGGGCGTGTGG
81016043 GATCTCACAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.17, C:0.29, G:0.38, T:0.16
Consensus pattern (30 bp):
CACACGGCCTAGCCACACGGGCGTGTGGAG
Found at i:81016380 original size:22 final size:21
Alignment explanation
Indices: 81016340--81016391 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
81016330 ATCACCCCAA
81016340 TTTT-ATTTTATTTTATTTAT
1 TTTTAATTTTATTTTATTTAT
81016360 TTTTAATTGTTATATTT-TTTAT
1 TTTTAATT-TTAT-TTTATTTAT
81016382 TTTT-ATTTTA
1 TTTTAATTTTA
81016392 ATAATTAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
20 7 0.24
21 6 0.21
22 13 0.45
23 3 0.10
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (21 bp):
TTTTAATTTTATTTTATTTAT
Found at i:81016446 original size:17 final size:16
Alignment explanation
Indices: 81016424--81016511 Score: 85
Period size: 17 Copynumber: 5.6 Consensus size: 16
81016414 ATTTTTATAC
81016424 TTATATTTTTAATTTTT
1 TTATATTTTT-ATTTTT
81016441 TTATATTTTTAATTTTT
1 TTATATTTTT-ATTTTT
* * *
81016458 ATATACTTTTATTATT
1 TTATATTTTTATTTTT
81016474 TT-TATTTTTA-TTTT
1 TTATATTTTTATTTTT
* *
81016488 GTA-ATTTCTATTTTT
1 TTATATTTTTATTTTT
81016503 TTAT-TTTTT
1 TTATATTTTT
81016512 CTTTCGTATT
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
14 10 0.17
15 17 0.29
16 6 0.10
17 25 0.43
ACGTcount: A:0.22, C:0.02, G:0.01, T:0.75
Consensus pattern (16 bp):
TTATATTTTTATTTTT
Found at i:81016449 original size:8 final size:8
Alignment explanation
Indices: 81016345--81016510 Score: 67
Period size: 7 Copynumber: 21.5 Consensus size: 8
81016335 CCCAATTTTA
81016345 TTTTAT-T
1 TTTTATAT
81016352 TTATT-TAT
1 TT-TTATAT
81016360 TTTTA-AT
1 TTTTATAT
*
81016367 TGTTATAT
1 TTTTATAT
81016375 TTTT-TA-
1 TTTTATAT
81016381 TTTT-TAT
1 TTTTATAT
*
81016388 TTTAATAAT
1 TTTTAT-AT
*
81016397 TAATTA-AT
1 T-TTTATAT
81016405 TAATTTAGTAT
1 T--TTTA-TAT
81016416 TTTTATA-
1 TTTTATAT
*
81016423 -CTTATAT
1 TTTTATAT
*
81016430 TTTTAATTT
1 TTTT-ATAT
81016439 TTTTATAT
1 TTTTATAT
81016447 TTTTA-AT
1 TTTTATAT
81016454 TTTTATAT
1 TTTTATAT
81016462 ACTTTTAT-T
1 --TTTTATAT
81016471 ATTTT-TAT
1 -TTTTATAT
81016479 TTTTAT-T
1 TTTTATAT
*
81016486 TTGTA-AT
1 TTTTATAT
*
81016493 TTCTAT-T
1 TTTTATAT
81016500 TTTT-TAT
1 TTTTATAT
81016507 TTTT
1 TTTT
81016511 TCTTTCGTAT
Statistics
Matches: 123, Mismatches: 14, Indels: 44
0.68 0.08 0.24
Matches are distributed among these distances:
6 12 0.10
7 47 0.38
8 34 0.28
9 19 0.15
10 8 0.07
11 3 0.02
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (8 bp):
TTTTATAT
Found at i:81016458 original size:15 final size:14
Alignment explanation
Indices: 81016340--81016510 Score: 89
Period size: 15 Copynumber: 11.3 Consensus size: 14
81016330 ATCACCCCAA
*
81016340 TTTTA-TTTTATTT
1 TTTTATTTTTATAT
81016353 TATTTATTTTTA-AT
1 T-TTTATTTTTATAT
81016367 TGTTATATTTTT-TAT
1 T-TT-TATTTTTATAT
*
81016382 TTTTATTTTAATAAT
1 TTTTATTTTTAT-AT
*
81016397 TAATTAATTAATTTAGTAT
1 T--TTTATT--TTTA-TAT
**
81016416 TTTTATACTTATAT
1 TTTTATTTTTATAT
81016430 TTTTAATTTTTTTATAT
1 TTTT-A--TTTTTATAT
81016447 TTTTAATTTTTATAT
1 TTTT-ATTTTTATAT
*
81016462 ACTTTTATTATTTTTAT
1 --TTTTATT-TTTATAT
81016479 TTTTATTTTGTA-AT
1 TTTTATTTT-TATAT
* *
81016493 TTCTATTTTTTTAT
1 TTTTATTTTTATAT
81016507 TTTT
1 TTTT
81016511 TCTTTCGTAT
Statistics
Matches: 124, Mismatches: 15, Indels: 37
0.70 0.09 0.21
Matches are distributed among these distances:
13 8 0.06
14 35 0.28
15 39 0.31
16 3 0.02
17 32 0.26
19 6 0.05
20 1 0.01
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (14 bp):
TTTTATTTTTATAT
Found at i:81016478 original size:9 final size:9
Alignment explanation
Indices: 81016427--81016479 Score: 51
Period size: 9 Copynumber: 6.1 Consensus size: 9
81016417 TTTATACTTA
81016427 TATTTTTAAT
1 TATTTTT-AT
81016437 T-TTTTTA-
1 TATTTTTAT
81016444 TATTTTTA-
1 TATTTTTAT
81016452 -ATTTTTAT
1 TATTTTTAT
*
81016460 ATACTTTTAT
1 -TATTTTTAT
81016470 TATTTTTAT
1 TATTTTTAT
81016479 T
1 T
81016480 TTTATTTTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
7 8 0.22
8 7 0.19
9 14 0.38
10 8 0.22
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.74
Consensus pattern (9 bp):
TATTTTTAT
Found at i:81016506 original size:22 final size:22
Alignment explanation
Indices: 81016478--81016527 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
81016468 ATTATTTTTA
81016478 TTTTTATTTTGTAATTTC-TATT
1 TTTTTATTTT-TAATTTCGTATT
**
81016500 TTTTTATTTTTTCTTTCGTATT
1 TTTTTATTTTTAATTTCGTATT
81016522 TTTTTA
1 TTTTTA
81016528 CTATTATCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.14, C:0.06, G:0.04, T:0.76
Consensus pattern (22 bp):
TTTTTATTTTTAATTTCGTATT
Found at i:81016510 original size:6 final size:6
Alignment explanation
Indices: 81016340--81016502 Score: 51
Period size: 6 Copynumber: 24.7 Consensus size: 6
81016330 ATCACCCCAA
*
81016340 TTTTAT TTTATTT TATTTAT TTTTAAT TGTTATATT TTTTAT TTTTAT
1 TTTTAT TTT-TAT T-TTTAT TTTT-AT T-TT-TA-T TTTTAT TTTTAT
* * * * * * *
81016388 TTTAAT AATTAAT TAATTAAT TTAGTAT TTTTAT ACTTATAT TTTTAA
1 TTTTAT -TTTTAT T--TTTAT TT-TTAT TTTTAT --TTTTAT TTTTAT
* * *
81016436 TTTT-T TTATAT TTTTAAT TTTTAT ATACTT-T TATTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTT-AT TTTTAT -T-TTTAT TTTTAT TTTTAT TTTTAT
*
81016485 TTTGTAAT TTCTAT TTTT
1 TTT-T-AT TTTTAT TTTT
81016503 TTATTTTTTC
Statistics
Matches: 119, Mismatches: 19, Indels: 38
0.68 0.11 0.22
Matches are distributed among these distances:
5 5 0.04
6 57 0.48
7 30 0.25
8 24 0.20
9 3 0.03
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.71
Consensus pattern (6 bp):
TTTTAT
Found at i:81016511 original size:8 final size:8
Alignment explanation
Indices: 81016424--81016511 Score: 52
Period size: 8 Copynumber: 10.1 Consensus size: 8
81016414 ATTTTTATAC
81016424 TTATATTTT
1 TTAT-TTTT
*
81016433 TAATTTTT
1 TTATTTTT
81016441 TTATATTTT
1 TTAT-TTTT
*
81016450 TAATTTTT
1 TTATTTTT
* **
81016458 ATATACTT
1 TTATTTTT
81016466 TTATTATTT
1 TTATT-TTT
81016475 TTATTTTT
1 TTATTTTT
81016483 ATT-TTGTAATT
1 -TTATT-T--TT
81016494 TCTATTTTT
1 T-TATTTTT
81016503 TTATTTTT
1 TTATTTTT
81016511 T
1 T
81016512 CTTTCGTATT
Statistics
Matches: 61, Mismatches: 10, Indels: 17
0.69 0.11 0.19
Matches are distributed among these distances:
8 31 0.51
9 23 0.38
10 1 0.02
11 4 0.07
12 2 0.03
ACGTcount: A:0.22, C:0.02, G:0.01, T:0.75
Consensus pattern (8 bp):
TTATTTTT
Found at i:81016595 original size:17 final size:17
Alignment explanation
Indices: 81016573--81016610 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
81016563 TATTATTGAG
* *
81016573 TTTATTGTTATTTTATT
1 TTTATTATTATTATATT
81016590 TTTATTATTATTATATT
1 TTTATTATTATTATATT
81016607 TTTA
1 TTTA
81016611 ATCTTTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTATTATTATTATATT
Found at i:81029307 original size:19 final size:19
Alignment explanation
Indices: 81029280--81029323 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
81029270 TAAAATTATG
* *
81029280 TAATAAATATAATTATAAAA
1 TAAT-AATATAAATAAAAAA
81029300 TAATAATATAAATAAAAAA
1 TAATAATATAAATAAAAAA
81029319 TAATA
1 TAATA
81029324 TTTTGATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
TAATAATATAAATAAAAAA
Found at i:81029322 original size:30 final size:30
Alignment explanation
Indices: 81029263--81029322 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
81029253 GTGATTTAGA
* *
81029263 TATAAAATAAAATTATGTAATAAATATAAT
1 TATAAAATAAAATTATGAAATAAAAATAAT
81029293 TATAAAATAATAA-TAT-AAATAAAAAATAAT
1 TATAAAATAA-AATTATGAAAT-AAAAATAAT
81029323 ATTTTGATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
29 3 0.12
30 21 0.81
31 2 0.08
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (30 bp):
TATAAAATAAAATTATGAAATAAAAATAAT
Found at i:81032231 original size:27 final size:27
Alignment explanation
Indices: 81032200--81032264 Score: 123
Period size: 27 Copynumber: 2.4 Consensus size: 27
81032190 TAGTTTAATT
81032200 GCAATATTATGTTATAGCGGTATTACC
1 GCAATATTATGTTATAGCGGTATTACC
81032227 GCAATATTATGTTATAGCGGTATTACC
1 GCAATATTATGTTATAGCGGTATTACC
81032254 GCAATA-TATGT
1 GCAATATTATGT
81032265 GAGTCATGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 5 0.13
27 33 0.87
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (27 bp):
GCAATATTATGTTATAGCGGTATTACC
Found at i:81034101 original size:18 final size:18
Alignment explanation
Indices: 81034065--81034110 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
81034055 AATATTTATA
*
81034065 AATAATAATAGTAAATAT
1 AATAATAATATTAAATAT
*
81034083 AATAATAATATTAAGTAT
1 AATAATAATATTAAATAT
*
81034101 AGT-ATAATAT
1 AATAATAATAT
81034111 GTTCACAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 7 0.28
18 18 0.72
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (18 bp):
AATAATAATATTAAATAT
Found at i:81034140 original size:19 final size:18
Alignment explanation
Indices: 81034116--81034151 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
81034106 AATATGTTCA
81034116 CAACAATAATAATAATAAG
1 CAACAATAAT-ATAATAAG
81034135 CAACAATAATATAATAA
1 CAACAATAATATAATAA
81034152 TAATATAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.64, C:0.11, G:0.03, T:0.22
Consensus pattern (18 bp):
CAACAATAATATAATAAG
Found at i:81034152 original size:24 final size:25
Alignment explanation
Indices: 81034121--81034171 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 25
81034111 GTTCACAACA
81034121 ATAATAATAATA-AGCAACAA-TAAT
1 ATAATAATAATATAGCAA-AACTAAT
81034145 ATAATAATAATATAGCAAAACTAAT
1 ATAATAATAATATAGCAAAACTAAT
81034170 AT
1 AT
81034172 TACAAATACT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.61, C:0.08, G:0.04, T:0.27
Consensus pattern (25 bp):
ATAATAATAATATAGCAAAACTAAT
Found at i:81034704 original size:19 final size:21
Alignment explanation
Indices: 81034663--81034704 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
81034653 AAGGTAAATT
* *
81034663 TTTTTTTTGTTATTATTATTA
1 TTTTTTATGTTATTATTAATA
81034684 TTTTTTATGTT-TTA-TAATA
1 TTTTTTATGTTATTATTAATA
81034703 TT
1 TT
81034705 ATTATTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 6 0.32
20 3 0.16
21 10 0.53
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (21 bp):
TTTTTTATGTTATTATTAATA
Found at i:81034729 original size:25 final size:28
Alignment explanation
Indices: 81034673--81034724 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
81034663 TTTTTTTTGT
* *
81034673 TATTATTATTATTTTTTATGTTTTATAA
1 TATTATTATTATTATTTATGATTTATAA
81034701 TATTATTATT-TTATTTAT-ATTTAT
1 TATTATTATTATTATTTATGATTTAT
81034725 GTATTTATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
27 7 0.32
28 10 0.45
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (28 bp):
TATTATTATTATTATTTATGATTTATAA
Found at i:81034732 original size:34 final size:32
Alignment explanation
Indices: 81034672--81034738 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 32
81034662 TTTTTTTTTG
81034672 TTATTATTATTATTTTTTATGTTTTATA-ATA
1 TTATTATTATTATTTTTTATGTTTTATAGATA
81034703 TTATTATT-TTATTTATATTTATGTATTTATAGATA
1 TTATTATTATTA-TT-T-TTTATGT-TTTATAGATA
81034738 T
1 T
81034739 AGAAAAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
30 3 0.10
31 10 0.32
32 1 0.03
33 7 0.23
34 6 0.19
35 4 0.13
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (32 bp):
TTATTATTATTATTTTTTATGTTTTATAGATA
Found at i:81035984 original size:5 final size:5
Alignment explanation
Indices: 81035974--81036005 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
81035964 ATGTCTGTGA
81035974 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
81036006 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:81035999 original size:9 final size:9
Alignment explanation
Indices: 81035975--81036005 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
81035965 TGTCTGTGAA
81035975 AAATAAAAT
1 AAATAAAAT
81035984 AAAATAAAAT
1 -AAATAAAAT
81035994 AAATAAAAT
1 AAATAAAAT
81036003 AAA
1 AAA
81036006 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:81040432 original size:5 final size:5
Alignment explanation
Indices: 81040422--81040453 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
81040412 CAATTTGTGA
81040422 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
81040454 GAACATACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:81048771 original size:31 final size:31
Alignment explanation
Indices: 81048733--81048793 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
81048723 TTTTTAGGAG
81048733 AATGAAAGGTCAAGAGTCATTGGTTTATGGC
1 AATGAAAGGTCAAGAGTCATTGGTTTATGGC
81048764 AATGAAAGGTCAAGAGTCATTGGTTTATGG
1 AATGAAAGGTCAAGAGTCATTGGTTTATGG
81048794 TTTTTTATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (31 bp):
AATGAAAGGTCAAGAGTCATTGGTTTATGGC
Found at i:81055758 original size:18 final size:17
Alignment explanation
Indices: 81055723--81055755 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
81055713 ATCTGACAAA
81055723 GCCCGAAAAATGATAAT
1 GCCCGAAAAATGATAAT
81055740 GCCCGAAAAATGATAA
1 GCCCGAAAAATGATAA
81055756 ATGATAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.18, G:0.18, T:0.15
Consensus pattern (17 bp):
GCCCGAAAAATGATAAT
Found at i:81056637 original size:37 final size:37
Alignment explanation
Indices: 81056587--81056665 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
81056577 TTATTACAAA
* * *
81056587 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
81056624 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
81056661 GTCTT
1 GTCTT
81056666 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:81056905 original size:47 final size:47
Alignment explanation
Indices: 81056784--81057148 Score: 588
Period size: 47 Copynumber: 7.7 Consensus size: 47
81056774 CCCTTCGGGA
* * * * * *
81056784 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-C
*
81056832 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81056879 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81056926 CTAATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81056973 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81057020 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81057067 CTTATCACATATATACACTTTCACATTCATCACATTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
81057114 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
81057149 AGAATCCTAA
Statistics
Matches: 301, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 261 0.87
48 39 0.13
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81060320 original size:45 final size:45
Alignment explanation
Indices: 81060256--81060349 Score: 170
Period size: 45 Copynumber: 2.1 Consensus size: 45
81060246 TTAAAACACA
* *
81060256 ACCCATACCATTTAACGATGCATCACTATAGATTACGAATTTTTT
1 ACCCAGACCATTTAACGATGCATCACTATAGATTACAAATTTTTT
81060301 ACCCAGACCATTTAACGATGCATCACTATAGATTACAAATTTTTT
1 ACCCAGACCATTTAACGATGCATCACTATAGATTACAAATTTTTT
81060346 ACCC
1 ACCC
81060350 GATTCTCGCT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.34, C:0.24, G:0.09, T:0.33
Consensus pattern (45 bp):
ACCCAGACCATTTAACGATGCATCACTATAGATTACAAATTTTTT
Found at i:81072517 original size:29 final size:30
Alignment explanation
Indices: 81072451--81072519 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
81072441 TAAGTCTTCA
*
81072451 AAAATAAAGAAGAGAAAATAAAATTTAAAT
1 AAAATAAAGAAGAGAAAATAAAATTCAAAT
* *
81072481 AAACATAAA-AATAG-AAATAAAATTCATAGT
1 AAA-ATAAAGAAGAGAAAATAAAATTCA-AAT
81072511 AAAATAAAG
1 AAAATAAAG
81072520 GAACTCAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
29 16 0.48
30 12 0.36
31 5 0.15
ACGTcount: A:0.68, C:0.03, G:0.09, T:0.20
Consensus pattern (30 bp):
AAAATAAAGAAGAGAAAATAAAATTCAAAT
Found at i:81075860 original size:19 final size:19
Alignment explanation
Indices: 81075832--81075868 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
81075822 ACCTATCAGA
81075832 AGTAAATAAAATAAAATTT
1 AGTAAATAAAATAAAATTT
*
81075851 AGTAATTAAAATAAAATT
1 AGTAAATAAAATAAAATT
81075869 AAATTGCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.32
Consensus pattern (19 bp):
AGTAAATAAAATAAAATTT
Found at i:81083706 original size:27 final size:27
Alignment explanation
Indices: 81083658--81083817 Score: 150
Period size: 27 Copynumber: 5.9 Consensus size: 27
81083648 GCGAGGCTGC
* *
81083658 CAGATATTGTGACTA-AGTCACCAGATA
1 CAGATATTGTGGC-AGAGCCACCAGATA
81083685 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* * *
81083711 TAGATGTATATGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
81083738 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
81083765 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
81083792 TAGATAAATTGTGGCATAGCCACCAG
1 CAGAT--ATTGTGGCAGAGCCACCAG
81083818 GACGCTTCCT
Statistics
Matches: 110, Mismatches: 14, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
26 9 0.08
27 82 0.75
28 17 0.15
29 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:81083758 original size:54 final size:54
Alignment explanation
Indices: 81083676--81083817 Score: 205
Period size: 54 Copynumber: 2.6 Consensus size: 54
81083666 GTGACTAAGT
* * *
81083676 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAATAGATGTATATGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATATGGCAGAGC
* *
81083730 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATATGGCAGAGC
*
81083784 CACCAGATTAGATAAATTGTGGCATAGCCACCAG
1 CACCAGATCAGAT-AATTGTGGCATAGCCACCAG
81083818 GACGCTTCCT
Statistics
Matches: 80, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 5 0.06
54 55 0.69
55 20 0.25
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATATGGCAGAGC
Found at i:81091703 original size:27 final size:26
Alignment explanation
Indices: 81091673--81091814 Score: 169
Period size: 27 Copynumber: 5.2 Consensus size: 26
81091663 GTGACGAAGT
81091673 CACCAGATACAGATAATGTGGCATAGC
1 CACCAGAT-CAGATAATGTGGCATAGC
* *
81091700 CACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATA-ATGTGGCATAGC
81091727 CACCAGATCAGATAATTGTGGCATAGC
1 CACCAGATCAGATAA-TGTGGCATAGC
*
81091754 CACCAGGAT-AGATATATGTGGCAGAGC
1 CACCA-GATCAGATA-ATGTGGCATAGC
* *
81091781 CACCAGATTAGATAAATTGTGGCATAGT
1 CACCAGATCAGAT-AA-TGTGGCATAGC
81091809 CACCAG
1 CACCAG
81091815 GATGCTTCCT
Statistics
Matches: 101, Mismatches: 7, Indels: 13
0.83 0.06 0.11
Matches are distributed among these distances:
26 10 0.10
27 71 0.70
28 20 0.20
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
CACCAGATCAGATAATGTGGCATAGC
Found at i:81091749 original size:54 final size:54
Alignment explanation
Indices: 81091673--81091814 Score: 223
Period size: 54 Copynumber: 2.6 Consensus size: 54
81091663 GTGACGAAGT
81091673 CACCAGATACAGATAA-TGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
81091727 CACCAGATCAGATAATTGTGGCATAGCCACCAGGATAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
81091781 CACCAGATTAGATAAATTGTGGCATAGTCACCAG
1 CACCAGATCAGAT-AATTGTGGCATAGCCACCAG
81091815 GATGCTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
53 7 0.09
54 56 0.68
55 19 0.23
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:81094428 original size:66 final size:66
Alignment explanation
Indices: 81094354--81094495 Score: 221
Period size: 66 Copynumber: 2.2 Consensus size: 66
81094344 TCGTGTGACC
* * *
81094354 CAAGTCAGTAACCTCCCTAGTTTTCCCATGGCCATGGCACACGGGTGTGTCTCCGGTCGTGTGGT
1 CAAGTCAGTAACCTCCCTAGTTTTCCCACGGCCATGGCACACGGGCGTGTCTCCGGCCGTGTGGT
81094419 A
66 A
** * *
81094420 CAAGTCAGTAACCTCTTTAGTTTTTCCACGGCTATGGCACACGGGCGTGTCTCCGGCCGTGTGGT
1 CAAGTCAGTAACCTCCCTAGTTTTCCCACGGCCATGGCACACGGGCGTGTCTCCGGCCGTGTGGT
81094485 A
66 A
81094486 CAAGTCAGTA
1 CAAGTCAGTA
81094496 TCTATGCCTT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.27
Consensus pattern (66 bp):
CAAGTCAGTAACCTCCCTAGTTTTCCCACGGCCATGGCACACGGGCGTGTCTCCGGCCGTGTGGT
A
Found at i:81094510 original size:66 final size:66
Alignment explanation
Indices: 81094354--81094519 Score: 192
Period size: 66 Copynumber: 2.5 Consensus size: 66
81094344 TCGTGTGACC
* * * * * * * *
81094354 CAAGTCAGTAACCTCCCTAGTTTTCCCATGGCCATGGCACACGGGTGTGTCTCCGGTCGTGTGGT
1 CAAGTCAGTAACATCCTTATTTTTCACACGGCTATGGCACACGGGCGTGTCTCCGGCCGTGTGGT
81094419 A
66 A
* *
81094420 CAAGTCAGTAACCTCTTTAGTTTTTC-CACGGCTATGGCACACGGGCGTGTCTCCGGCCGTGTGG
1 CAAGTCAGTAACATCCTTA-TTTTTCACACGGCTATGGCACACGGGCGTGTCTCCGGCCGTGTGG
81094484 TA
65 TA
*
81094486 CAAGTCAGTATCTATGCCTT-TTTTTCACACGGCT
1 CAAGTCAGTAAC-AT-CCTTATTTTTCACACGGCT
81094520 TTTGATACAG
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
66 70 0.81
67 13 0.15
68 3 0.03
ACGTcount: A:0.17, C:0.28, G:0.25, T:0.30
Consensus pattern (66 bp):
CAAGTCAGTAACATCCTTATTTTTCACACGGCTATGGCACACGGGCGTGTCTCCGGCCGTGTGGT
A
Found at i:81102669 original size:40 final size:40
Alignment explanation
Indices: 81102592--81102768 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
81102582 AAACCAAGTA
* * * *
81102592 CCTTCGGAATTTAG-CCGGATATAGCTAA-TTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
81102631 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81102671 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
81102711 CCTTCGGG-CTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
81102750 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
81102769 TTATCATCCG
Statistics
Matches: 124, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
38 3 0.02
39 47 0.38
40 73 0.59
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81102745 original size:79 final size:80
Alignment explanation
Indices: 81102592--81102768 Score: 236
Period size: 79 Copynumber: 2.2 Consensus size: 80
81102582 AAACCAAGTA
* * * * **
81102592 CCTTCGGAATTTAG-CCGGATATAGCTAATTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGCTAATCGCACAAATGCCTTCGGGACTTAGCCCGAATATAG
*
81102656 TAACTCGCACAAATG
66 TAACTAGCACAAATG
81102671 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGAA-ATT
1 CCTTCGGGACTTAGCCCGGATATAGCTAA-TCGCACAAATGCCTTCGGGACTTAGCCCGAATA-T
*
81102733 AGTCACTAGCACAAATG
64 AGTAACTAGCACAAATG
81102750 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
81102769 TTATCATCCG
Statistics
Matches: 87, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
78 1 0.01
79 59 0.68
80 27 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCTAATCGCACAAATGCCTTCGGGACTTAGCCCGAATATAG
TAACTAGCACAAATG
Found at i:81110056 original size:38 final size:40
Alignment explanation
Indices: 81109904--81110079 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
81109894 AAACCAAGTA
* * * * *
81109904 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATT
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
81109943 CCGTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81109983 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
81110023 CCTTC-GG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
81110061 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
81110080 TTATCATCCG
Statistics
Matches: 121, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
37 1 0.01
38 32 0.26
39 16 0.13
40 72 0.60
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81110056 original size:78 final size:80
Alignment explanation
Indices: 81109904--81110079 Score: 218
Period size: 78 Copynumber: 2.2 Consensus size: 80
81109894 AAACCAAGTA
* * * * * *
81109904 CCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCAAATTCCGTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCGTCGGGACTTAGCCCGGATATAG
*
81109968 TAACTCGCACAAATG
66 TAACTAGCACAAATG
*
81109983 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTC-GG-CTTAGCCCGGA-ATT
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCGTCGGGACTTAGCCCGGATA-T
*
81110044 AGTCACTAGCACAAATG
64 AGTAACTAGCACAAATG
81110061 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
81110080 TTATCATCCG
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
77 1 0.01
78 45 0.53
79 15 0.18
80 24 0.28
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCGTCGGGACTTAGCCCGGATATAG
TAACTAGCACAAATG
Found at i:81116330 original size:4 final size:4
Alignment explanation
Indices: 81116321--81116355 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
81116311 TATTGTTTAG
81116321 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATT
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATT
81116356 CATACATTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (4 bp):
ATTA
Found at i:81118687 original size:14 final size:15
Alignment explanation
Indices: 81118668--81118723 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
81118658 AATCTTCAAT
81118668 GATATG-CAATCTTA
1 GATATGACAATCTTA
81118682 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
81118699 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
81118717 GATATGA
1 GATATGA
81118724 TATACAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:81118694 original size:17 final size:17
Alignment explanation
Indices: 81118674--81118737 Score: 92
Period size: 17 Copynumber: 3.6 Consensus size: 17
81118664 CAATGATATG
81118674 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
81118691 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
81118709 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
81118728 CAATCTTAGA
1 CAATCTTAGA
81118738 AGATATGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.36
18 15 0.36
19 11 0.26
20 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:81118712 original size:35 final size:37
Alignment explanation
Indices: 81118666--81118744 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
81118656 ATAATCTTCA
81118666 ATGATATGCAATCTTAGATATG-ATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGAATACAATCTTAGAT
81118702 ATGAT-TGCAATCTTAGATATGATATACAATCTTAGA-
1 ATGATATGCAATCTTAGATATGA-ATACAATCTTAGAT
81118738 A-GATATG
1 ATGATATG
81118745 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 19 0.47
36 8 0.20
37 13 0.32
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGAATACAATCTTAGAT
Found at i:81119128 original size:21 final size:21
Alignment explanation
Indices: 81119086--81119146 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
81119076 TGTAAATTAT
*
81119086 TATATATTATAT-TTTAACTTA
1 TATATATTATATCTTT-ATTTA
*
81119107 TATATCTTATATCTTTATTTA
1 TATATATTATATCTTTATTTA
* *
81119128 TTTATATTATA-CATTATTT
1 TATATATTATATCTTTATTT
81119147 TAAAAACTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 7 0.21
21 24 0.71
22 3 0.09
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.61
Consensus pattern (21 bp):
TATATATTATATCTTTATTTA
Found at i:81119271 original size:25 final size:24
Alignment explanation
Indices: 81119239--81119317 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 24
81119229 TAAAATTCAC
81119239 TATTAAATATTATATTTTTATGTAT
1 TATTAAATATTATATTTTT-TGTAT
* *
81119264 TATTAAATGTTTATATTATTTG-AT
1 TATTAAAT-ATTATATTTTTTGTAT
* *
81119288 ATAATACAATATCATATTTTTT-TAT
1 -TATTA-AATATTATATTTTTTGTAT
81119313 TATTA
1 TATTA
81119318 TCTTAAAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
24 6 0.14
25 25 0.58
26 12 0.28
ACGTcount: A:0.37, C:0.03, G:0.04, T:0.57
Consensus pattern (24 bp):
TATTAAATATTATATTTTTTGTAT
Found at i:81125000 original size:6 final size:6
Alignment explanation
Indices: 81124986--81125042 Score: 57
Period size: 6 Copynumber: 9.7 Consensus size: 6
81124976 CTTCTATTTC
* *
81124986 AAAAA- AAAAAG AAAAAG -AAAAG AAAAAG AGAAAA- AAAAAT AAAGAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A-AAAAG AAAAAG AAAAAG
81125032 AAAAAAG AAAA
1 -AAAAAG AAAA
81125043 GATGGAGAGG
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
5 14 0.32
6 21 0.48
7 9 0.20
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:81125023 original size:23 final size:24
Alignment explanation
Indices: 81124986--81125044 Score: 79
Period size: 23 Copynumber: 2.5 Consensus size: 24
81124976 CTTCTATTTC
81124986 AAAAAA-AAAAGAAAAAGAAA-AG
1 AAAAAAGAAAAGAAAAAGAAAGAG
*
81125008 AAAAAGAGAAAA-AAAAATAAAGAG
1 AAAAA-AGAAAAGAAAAAGAAAGAG
81125032 AAAAAAGAAAAGA
1 AAAAAAGAAAAGA
81125045 TGGAGAGGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
22 5 0.16
23 15 0.47
24 12 0.38
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (24 bp):
AAAAAAGAAAAGAAAAAGAAAGAG
Found at i:81125033 original size:29 final size:30
Alignment explanation
Indices: 81124987--81125044 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
81124977 TTCTATTTCA
*
81124987 AAAAAAAAAGAAAAAGAAAAGA-AAAAGAG
1 AAAAAAAAAGAAAAAGAAAAAAGAAAAGAG
* *
81125016 AAAAAAAAATAAAGAGAAAAAAGAAAAGA
1 AAAAAAAAAGAAAAAGAAAAAAGAAAAGA
81125045 TGGAGAGGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 19 0.76
30 6 0.24
ACGTcount: A:0.83, C:0.00, G:0.16, T:0.02
Consensus pattern (30 bp):
AAAAAAAAAGAAAAAGAAAAAAGAAAAGAG
Found at i:81126063 original size:44 final size:44
Alignment explanation
Indices: 81125922--81126096 Score: 178
Period size: 44 Copynumber: 4.0 Consensus size: 44
81125912 CAAAGAAACA
* * *
81125922 AGATTTGGCATCCCTATGTTTATCGGGAACAGATCGAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAGT
* * * * * *
81125966 AGATCTGACATTCCTGTGCTTATAGCGAAGCAGATTGAAGAT-TT
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATTGAAGATAGT
*
81126010 CAGCA--TGGCATCCCCGTGTTTATAGGGAACA-AGTTGAAGATAGT
1 -AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TTGAAGATAGT
* *
81126054 AGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAG
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAG
81126097 CATATCTAAC
Statistics
Matches: 105, Mismatches: 18, Indels: 16
0.76 0.13 0.12
Matches are distributed among these distances:
42 2 0.02
43 12 0.11
44 76 0.72
45 14 0.13
46 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATTGAAGATAGT
Found at i:81126077 original size:88 final size:87
Alignment explanation
Indices: 81125927--81126094 Score: 214
Period size: 88 Copynumber: 1.9 Consensus size: 87
81125917 AAACAAGATT
* *
81125927 TGGCATCCCTATGTTTATCGGGAACAGATCGAAGATAGTAGATCTGACATTCCTGTGCTTATAGC
1 TGGCATCCCCATGTTTATAGGGAACAGATCGAAGATAGTAGATCTGACATTCCTGTGCTTATAGC
*
81125992 GAAGCAGATTGAAGATTTCAGCA
66 GAA-CAGATCGAAGATTTCAGCA
* * * * *
81126015 TGGCATCCCCGTGTTTATAGGGAACA-AGTTGAAGATAGTAGATTTGGCA-TCCTTGTGTTTATA
1 TGGCATCCCCATGTTTATAGGGAACAGA-TCGAAGATAGTAGATCTGACATTCC-TGTGCTTATA
*
81126078 GGGAACAGATCGAAGAT
64 GCGAACAGATCGAAGAT
81126095 AGCATATCTA
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
87 15 0.22
88 54 0.78
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (87 bp):
TGGCATCCCCATGTTTATAGGGAACAGATCGAAGATAGTAGATCTGACATTCCTGTGCTTATAGC
GAACAGATCGAAGATTTCAGCA
Found at i:81126377 original size:119 final size:119
Alignment explanation
Indices: 81126093--81126684 Score: 1001
Period size: 119 Copynumber: 5.0 Consensus size: 119
81126083 CAGATCGAAG
*
81126093 ATAGCATATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
81126158 TTACAAGGAACAGATCGAGGACATAGCAGATTTGACT-T-AGACGTTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
*
81126210 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGGTCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
81126275 TTACAAAGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
*
81126329 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
81126394 TTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
81126448 ATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
81126513 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * * *
81126567 ATAGCAGATCTAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * *
81126632 TTACAAGGAACAAATCGAGGACAT-GACAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAG-CAGATTTGACTCTCAGACGTTCTCAAA
81126685 CAGACTCAAG
Statistics
Matches: 450, Mismatches: 22, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
117 98 0.22
118 2 0.00
119 350 0.78
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:81126714 original size:83 final size:83
Alignment explanation
Indices: 81126608--81126960 Score: 559
Period size: 83 Copynumber: 4.2 Consensus size: 83
81126598 GAAGCAGATC
81126608 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGA-CATGACAGATATGACTCTC
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCATG-CAGATATGACTCTC
81126672 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
*
81126691 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAACGAGGA-CATTGCAGATATGACTCTC
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCA-TGCAGATATGACTCTC
81126755 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* * *
81126774 CAAGATGGTTTGGCATCCTTGTGCTTATAAGCAACAAATCGAGGACCTTGCAG-TCATGACTCTC
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCATGCAGAT-ATGACTCTC
81126838 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* * *
81126857 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCATGCAGATATGACTCTC
81126922 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* * *
81126941 CAGGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
81126961 ACAAATCGAA
Statistics
Matches: 253, Mismatches: 12, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
82 1 0.00
83 173 0.68
84 78 0.31
85 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCATGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:81127367 original size:18 final size:18
Alignment explanation
Indices: 81127344--81127424 Score: 119
Period size: 18 Copynumber: 4.5 Consensus size: 18
81127334 ATGGAAATAT
* *
81127344 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTAC
81127362 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
81127379 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
81127397 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
81127416 AATCTTAGA
1 AATCTTAGA
81127425 AGATATGATT
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
17 16 0.28
18 30 0.53
19 11 0.19
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:81127383 original size:35 final size:36
Alignment explanation
Indices: 81127339--81127422 Score: 134
Period size: 35 Copynumber: 2.3 Consensus size: 36
81127329 CTCATATGGA
*
81127339 AATATAATCTTAAATATGATTGCAATCTTAGATATG
1 AATACAATCTTAAATATGATTGCAATCTTAGATATG
*
81127375 -ATACAATCTTAGATATGATTGCAATCTTAGATATG
1 AATACAATCTTAAATATGATTGCAATCTTAGATATG
81127410 ATATACAATCTTA
1 A-ATACAATCTTA
81127423 GAAGATATGA
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
35 33 0.75
37 11 0.25
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (36 bp):
AATACAATCTTAAATATGATTGCAATCTTAGATATG
Found at i:81127818 original size:21 final size:21
Alignment explanation
Indices: 81127776--81127836 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
81127766 AAATTATTAT
*
81127776 TATATATTATAT-TTTAACTTA
1 TATATATTATATATTT-ATTTA
*
81127797 TATATCTTATATATTTATTTA
1 TATATATTATATATTTATTTA
* *
81127818 TTTATATTATACA-TTATTT
1 TATATATTATATATTTATTT
81127837 TAAAAACTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 6 0.18
21 25 0.74
22 3 0.09
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (21 bp):
TATATATTATATATTTATTTA
Found at i:81142871 original size:13 final size:13
Alignment explanation
Indices: 81142853--81142877 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81142843 AGACCGTGTG
81142853 AAGGACACGGGCC
1 AAGGACACGGGCC
81142866 AAGGACACGGGC
1 AAGGACACGGGC
81142878 ATGTGCTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.28, G:0.40, T:0.00
Consensus pattern (13 bp):
AAGGACACGGGCC
Found at i:81155248 original size:28 final size:28
Alignment explanation
Indices: 81155208--81155263 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
81155198 GACTTACTCA
81155208 CATAGCCACAAGACACGCCCATGTACGT
1 CATAGCCACAAGACACGCCCATGTACGT
81155236 CATAGCCACAAGACACGCCCATGTACGT
1 CATAGCCACAAGACACGCCCATGTACGT
81155264 TGCATGTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.36, G:0.18, T:0.14
Consensus pattern (28 bp):
CATAGCCACAAGACACGCCCATGTACGT
Found at i:81156536 original size:145 final size:145
Alignment explanation
Indices: 81156273--81156566 Score: 534
Period size: 145 Copynumber: 2.0 Consensus size: 145
81156263 GCCCTAGTCA
* * *
81156273 GAAAGTGGTTTCGGGATCACAAAACCGAGTCCCAAAAATAATCAAATGTTATATTATGTGTTTAT
1 GAAAGTAGTTTCGAGATCACAAAACCAAGTCCCAAAAATAATCAAATGTTATATTATGTGTTTAT
81156338 TTCATGTGAAAGTGCATGTGTGAAAATACCATACTTTGATTCTGCCATTTGTGAGTGAAATTATG
66 TTCATGTGAAAGTGCATGTGTGAAAATACCATACTTTGATTCTGCCATTTGTGAGTGAAATTATG
81156403 AAATAGGACCTATGT
131 AAATAGGACCTATGT
*
81156418 GAAAGTAGTTTCGAGATCACAAAACCAAGTCCCAAAAATAATCAAATGTTATATTATTTGTTTAT
1 GAAAGTAGTTTCGAGATCACAAAACCAAGTCCCAAAAATAATCAAATGTTATATTATGTGTTTAT
*
81156483 TTCATGTGAAAGTGCATGTGTGAAAATACCATGCTTTGATTCTGCCATTTGTGAGTGAAATTATG
66 TTCATGTGAAAGTGCATGTGTGAAAATACCATACTTTGATTCTGCCATTTGTGAGTGAAATTATG
*
81156548 AAATATGACCTATGT
131 AAATAGGACCTATGT
81156563 GAAA
1 GAAA
81156567 ATTTTTGAAA
Statistics
Matches: 143, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
145 143 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (145 bp):
GAAAGTAGTTTCGAGATCACAAAACCAAGTCCCAAAAATAATCAAATGTTATATTATGTGTTTAT
TTCATGTGAAAGTGCATGTGTGAAAATACCATACTTTGATTCTGCCATTTGTGAGTGAAATTATG
AAATAGGACCTATGT
Found at i:81159123 original size:43 final size:43
Alignment explanation
Indices: 81159048--81159231 Score: 282
Period size: 43 Copynumber: 4.3 Consensus size: 43
81159038 GATAAATCCC
* * *
81159048 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
81159089 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
81159132 GCAGGCTTAGTGCCGGTGATGTGTATTCGAGCCTTCGTACCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
81159175 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
81159218 GCAGGTTTCGTGCC
1 GCAGGCTTAGTGCC
81159232 TAGCAGGTTT
Statistics
Matches: 132, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
41 15 0.11
42 2 0.02
43 115 0.87
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:81159229 original size:16 final size:16
Alignment explanation
Indices: 81159208--81159247 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
81159198 TATTCGGGCC
81159208 TTCGTGCCTAGCAGGT
1 TTCGTGCCTAGCAGGT
81159224 TTCGTGCCTAGCAGGT
1 TTCGTGCCTAGCAGGT
81159240 TTCGTGCC
1 TTCGTGCC
81159248 GGTGATGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.10, C:0.28, G:0.30, T:0.33
Consensus pattern (16 bp):
TTCGTGCCTAGCAGGT
Found at i:81159234 original size:59 final size:59
Alignment explanation
Indices: 81159165--81159281 Score: 207
Period size: 59 Copynumber: 2.0 Consensus size: 59
81159155 TATTCGAGCC
*
81159165 TTCGTACCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGT
1 TTCGTACCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCGTCGTGCCTAGCAGGT
* *
81159224 TTCGTGCCTAGCAGGTTTCGTGCCGGTGATGTGTATTCGGGCCGTCGTGCCTAGCAGG
1 TTCGTACCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCGTCGTGCCTAGCAGG
81159282 CGTAATGCCG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.11, C:0.25, G:0.34, T:0.30
Consensus pattern (59 bp):
TTCGTACCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCGTCGTGCCTAGCAGGT
Found at i:81184021 original size:35 final size:35
Alignment explanation
Indices: 81183921--81184089 Score: 169
Period size: 35 Copynumber: 4.8 Consensus size: 35
81183911 AGGTAAGTAT
* *
81183921 ATGTGAGGTTATATTGAACTTGTGTATTCGATTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
*
81183956 ATGTGAGCTTATATTGAACTTGTATATTCGGTTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* ** *
81183991 ATGTGAGGTTATATTGAATTTGTATATTCGGCCAT
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * * ** *
81184026 ATGAGATGTT-TATTTGAACTTGAACCTTAGGTTAC
1 ATGTGAGGTTATA-TTGAACTTGTATATTCGGTTAC
* * * *
81184061 ATGTAATGATATATTGAACTTATATATTC
1 ATGTGAGGTTATATTGAACTTGTATATTC
81184090 AGCCATATGA
Statistics
Matches: 106, Mismatches: 26, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
34 2 0.02
35 102 0.96
36 2 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (35 bp):
ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
Found at i:81184043 original size:70 final size:70
Alignment explanation
Indices: 81183921--81184099 Score: 189
Period size: 70 Copynumber: 2.6 Consensus size: 70
81183911 AGGTAAGTAT
* *** * * * * *
81183921 ATGTGAGGTTATATTGAACTTGTGTATTCGATTACATGTGAGCTTATATTGAACTTGTATATTCG
1 ATGTGAGGTTATATTGAACTTGTATATTCGGCCATATGAGAGCTTATATTGAACTTGAACATTAG
81183986 GTTAC
66 GTTAC
* * *
81183991 ATGTGAGGTTATATTGAATTTGTATATTCGGCCATATGAGATGTTTAT-TTGAACTTGAACCTTA
1 ATGTGAGGTTATATTGAACTTGTATATTCGGCCATATGAGA-GCTTATATTGAACTTGAACATTA
81184055 GGTTAC
65 GGTTAC
* * * * *
81184061 ATGTAATGATATATTGAACTTATATATTCAGCCATATGA
1 ATGTGAGGTTATATTGAACTTGTATATTCGGCCATATGA
81184100 AATAATATAA
Statistics
Matches: 90, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
70 85 0.94
71 5 0.06
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (70 bp):
ATGTGAGGTTATATTGAACTTGTATATTCGGCCATATGAGAGCTTATATTGAACTTGAACATTAG
GTTAC
Found at i:81198432 original size:13 final size:13
Alignment explanation
Indices: 81198414--81198442 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
81198404 GGTTGTTTAT
81198414 TAAACTAATTAAC
1 TAAACTAATTAAC
81198427 TAAACTAATTAAC
1 TAAACTAATTAAC
81198440 TAA
1 TAA
81198443 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:81201253 original size:30 final size:30
Alignment explanation
Indices: 81201212--81201271 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
81201202 TTCTCGAGCC
81201212 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* * *
81201242 TAGGGGCAAAAGTGTAATTTTTCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
81201272 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:81203805 original size:33 final size:33
Alignment explanation
Indices: 81203763--81203826 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
81203753 TGTACAAAGA
*
81203763 TAGAATATTCAAAATAAATAAAATCATAAGACG
1 TAGAATATTCAAAATAAAGAAAATCATAAGACG
81203796 TAGAATATTCAAAATAAAGAAAATCATAAGA
1 TAGAATATTCAAAATAAAGAAAATCATAAGA
81203827 GGGAAAGAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.59, C:0.08, G:0.09, T:0.23
Consensus pattern (33 bp):
TAGAATATTCAAAATAAAGAAAATCATAAGACG
Found at i:81209105 original size:93 final size:93
Alignment explanation
Indices: 81208990--81209160 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
81208980 GCCCCTAAGT
* *
81208990 GAACTCGGACTCAACTTAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
81209055 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
81209083 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81209148 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81209161 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:81209148 original size:46 final size:46
Alignment explanation
Indices: 81208985--81209157 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
81208975 AACCCGCCCC
* * *
81208985 TAAGTGAACTCGGACTCAACTTAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
81209031 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
81209079 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
81209124 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81209158 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 59 0.56
47 28 0.27
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:81209615 original size:30 final size:30
Alignment explanation
Indices: 81209581--81209640 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
81209571 ATTTAATACG
81209581 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
* * *
81209611 AACTTTTACATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
81209641 GGCTCAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:81212453 original size:13 final size:13
Alignment explanation
Indices: 81212435--81212463 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
81212425 TGTTGTTTAT
81212435 TAAACTAATTAAC
1 TAAACTAATTAAC
81212448 TAAACTAATTAAC
1 TAAACTAATTAAC
81212461 TAA
1 TAA
81212464 TTAAGCTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:81221996 original size:39 final size:40
Alignment explanation
Indices: 81221951--81222061 Score: 98
Period size: 40 Copynumber: 2.8 Consensus size: 40
81221941 CGGGGTTTAG
* * *
81221951 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
81221990 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * *
81222030 CCGGATATAGTCGCTAGCACAAATGCCTTCGG
1 CCGGATATAACCACTAGCATAAAGGCCTTCGG
81222062 ATCTTAGTCC
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 15 0.25
40 45 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:81222021 original size:40 final size:40
Alignment explanation
Indices: 81221974--81222118 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
81221964 CTCGCACAAG
* * * * *
81221974 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
81222014 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
81222054 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
81222095 GCCTTCGGGACTTAGCCCAGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
81222119 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.65
41 26 0.29
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:81226600 original size:26 final size:26
Alignment explanation
Indices: 81226526--81226590 Score: 103
Period size: 26 Copynumber: 2.5 Consensus size: 26
81226516 GTAGCTCCGG
81226526 AGAGCCATTAATCAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* *
81226552 AGAGCCTTTAATCAGGAAGCTCACGA
1 AGAGCCATTAATCAGGAAGCTCACAA
81226578 AGAGCCATATAAT
1 AGAGCCAT-TAAT
81226591 GGGATGCTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
26 31 0.89
27 4 0.11
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:81231010 original size:23 final size:23
Alignment explanation
Indices: 81230983--81231027 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
81230973 TATTTTCAAG
81230983 TCTTACAA-ACTCAAAAACAATGT
1 TCTTA-AAGACTCAAAAACAATGT
*
81231006 TCTTAAATGACTTAAAAACAAT
1 TCTTAAA-GACTCAAAAACAAT
81231028 TCACAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 2 0.11
23 5 0.26
24 12 0.63
ACGTcount: A:0.49, C:0.18, G:0.04, T:0.29
Consensus pattern (23 bp):
TCTTAAAGACTCAAAAACAATGT
Found at i:81233003 original size:43 final size:43
Alignment explanation
Indices: 81232941--81233085 Score: 211
Period size: 43 Copynumber: 3.4 Consensus size: 43
81232931 CTATTCGGGC
81232941 CTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGG
1 CTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGG
* **
81232984 CTTCGAGCCTAGCAAGCTATAATGCCAATGAGTTAATATC-GAG
1 CTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCAG-G
* * * *
81233027 CTTCGAACCTAGCAGGCTATAATGACGGTGATTTAATATTAGG
1 CTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGG
81233070 CTTCGAGCCTAGCAGG
1 CTTCGAGCCTAGCAGG
81233086 AGTAATACTG
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
42 1 0.01
43 87 0.98
44 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (43 bp):
CTTCGAGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGG
Found at i:81233695 original size:16 final size:18
Alignment explanation
Indices: 81233664--81233696 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
81233654 AACTCGTCAC
81233664 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
81233682 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
81233697 AATTCGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:81240842 original size:28 final size:28
Alignment explanation
Indices: 81240802--81240858 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
81240792 TGTGGCTTGG
81240802 GTCATAACATTCGGCCATGGTAGTTTGA
1 GTCATAACATTCGGCCATGGTAGTTTGA
81240830 GTCATAACATTCGGCCATGGTAGTTTGA
1 GTCATAACATTCGGCCATGGTAGTTTGA
81240858 G
1 G
81240859 GATTAAGGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (28 bp):
GTCATAACATTCGGCCATGGTAGTTTGA
Found at i:81241921 original size:39 final size:40
Alignment explanation
Indices: 81241763--81241992 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
81241753 ATTTGAATGA
* *
81241763 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* * *
81241803 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * *
81241843 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
81241883 TATCCGGGTTAAGACCCGAAGGCA-TTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
81241922 TATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
81241961 TATCCGGGCTAAGACCCGAAGGCATTTGTGCT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCT
81241993 TGTGGTTATA
Statistics
Matches: 169, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 9 0.05
39 53 0.31
40 105 0.62
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
Found at i:81247992 original size:43 final size:43
Alignment explanation
Indices: 81247926--81248158 Score: 219
Period size: 43 Copynumber: 5.6 Consensus size: 43
81247916 GGCCTTCGAT
* * *
81247926 CCTAGCCGGCTATAATGCTGGTGAGTTAATATTGGGCTTCAAG
1 CCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGGCTTCAAG
*
81247969 CCTAGCAGGCTATAATGCCGGTGAGTTAATATCGAGCTTCGAA-
1 CCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGGCTTC-AAG
* *
81248012 CCTAGCAGGCTATAATGCCGGTGAGTTAATATCAGGCTTCGAG
1 CCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGGCTTCAAG
* * * * ** * *
81248055 CCTAGCAGG-TGTAATGCCGGTGAATGAGT-TTAGACTTAAAG
1 CCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGGCTTCAAG
* * * * * *
81248096 TCTAGCAGGCT-TCATGCCGGTGA-TGAAT-TCGGGTTTTAAA
1 CCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGGCTTCAAG
*
81248136 CCTAGCAGGCTA-ATTGCCGGTGA
1 CCTAGCAGGCTATAATGCCGGTGA
81248159 TTTGATATAA
Statistics
Matches: 159, Mismatches: 27, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
40 29 0.18
41 27 0.17
42 18 0.11
43 83 0.52
44 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (43 bp):
CCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGGCTTCAAG
Found at i:81248673 original size:16 final size:18
Alignment explanation
Indices: 81248642--81248674 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
81248632 AACTCGTCAC
81248642 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
81248660 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
81248675 AATTCGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:81250261 original size:24 final size:24
Alignment explanation
Indices: 81250229--81250299 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
81250219 AAGAATTTAG
* *
81250229 TCAAGATCATTCATATATTTTCAA
1 TCAAGATCATTCATGTATATTCAA
81250253 TCAAGATCATTCATGTATATTCAA
1 TCAAGATCATTCATGTATATTCAA
*
81250277 TCAAAATCATTCATGTATATTCA
1 TCAAGATCATTCATGTATATTCA
81250300 CATAATTCAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.39
Consensus pattern (24 bp):
TCAAGATCATTCATGTATATTCAA
Found at i:81250448 original size:20 final size:21
Alignment explanation
Indices: 81250423--81250478 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
81250413 TGCTATACGA
81250423 AGGCACCG-TAGTGCAAGTAG
1 AGGCACCGATAGTGCAAGTAG
* *
81250443 AGGCA-CGATTGTGCAATTAG
1 AGGCACCGATAGTGCAAGTAG
*
81250463 AGGCACC-AAAGTGCAA
1 AGGCACCGATAGTGCAA
81250479 ACGATTGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
19 2 0.07
20 27 0.90
21 1 0.03
ACGTcount: A:0.34, C:0.20, G:0.30, T:0.16
Consensus pattern (21 bp):
AGGCACCGATAGTGCAAGTAG
Found at i:81252212 original size:22 final size:21
Alignment explanation
Indices: 81252170--81252213 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
81252160 ATGCATATTG
*
81252170 AGTTATAATATGTAATGCATT
1 AGTTATAAAATGTAATGCATT
81252191 AGTTAGTAAAATGT-ATGTCATT
1 AGTTA-TAAAATGTAATG-CATT
81252213 A
1 A
81252214 TATGTGGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.41
Consensus pattern (21 bp):
AGTTATAAAATGTAATGCATT
Found at i:81252880 original size:39 final size:41
Alignment explanation
Indices: 81252779--81252962 Score: 215
Period size: 40 Copynumber: 4.6 Consensus size: 41
81252769 TTGAATGATG
*
81252779 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA
*
81252819 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATA
*
81252859 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
81252898 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
81252938 ACCGGGCTATGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81252963 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 8, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
39 49 0.38
40 65 0.51
41 13 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
Found at i:81252915 original size:79 final size:80
Alignment explanation
Indices: 81252779--81252962 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 80
81252769 TTGAATGATG
81252779 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
81252843 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * **
81252858 TTCCGGGCTAAGCCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
*
81252920 TTTGTGCGAGTTACTATA
63 TTTGTGCGAGATACTATA
* * *
81252938 ACCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTG
81252963 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
78 1 0.01
79 70 0.76
80 21 0.23
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATA
Found at i:81252980 original size:79 final size:78
Alignment explanation
Indices: 81252780--81252995 Score: 199
Period size: 79 Copynumber: 2.7 Consensus size: 78
81252770 TGAATGATGT
** * *
81252780 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCAT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGCAT
*
81252842 TTGTGCGAGATACTAATT
61 TTGTGCGAGATACTAATA
** * *
81252860 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTTGT
*
81252925 GCGAGTTACT-ATAA
65 GCGAGATACTAAT-A
* * * *
81252939 CCGGGCTATGTCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
81252996 TACGTGATTT
Statistics
Matches: 116, Mismatches: 14, Indels: 14
0.81 0.10 0.10
Matches are distributed among these distances:
78 18 0.16
79 77 0.66
80 21 0.18
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTGTG
CGAGATACTAATA
Found at i:81260496 original size:22 final size:21
Alignment explanation
Indices: 81260454--81260497 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
81260444 ATGCATATTG
*
81260454 AGTTATAATATGTAATGCATT
1 AGTTATAAAATGTAATGCATT
81260475 AGTTAGTAAAATGT-ATGTCATT
1 AGTTA-TAAAATGTAATG-CATT
81260497 A
1 A
81260498 TATGTGGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.41
Consensus pattern (21 bp):
AGTTATAAAATGTAATGCATT
Found at i:81261162 original size:39 final size:40
Alignment explanation
Indices: 81261062--81261246 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
81261052 TTGAATGATG
* *
81261062 TCCGGGCTAAGTCCCGAAGGC--TTGTTGCTAAGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGC-GAGTTACTAAT
* * * *
81261101 ATCCGGACTAAGACCCGAAGGCAATTGTGCGAGATACTAAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
81261142 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
81261181 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
81261220 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
81261247 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 36 0.29
40 81 0.64
41 6 0.05
42 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:81261197 original size:79 final size:82
Alignment explanation
Indices: 81261062--81261246 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 82
81261052 TTGAATGATG
81261062 TCCGGGCTAAGTCCCGAAGGC--TTGTTGCTAAGTGACAATATCCGGACTAAGACCCGAAGGCAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTTGCTAAGTGACAATATCCGGACTAAGACCCGAAGGCAA
81261125 TTGTGCGAGATACTA-A
66 TTGTGCGAGATACTATA
* * ** *
81261141 TTCCGGGCTAAG-CCCGAAGGCATTTG-TGC-GAGTTACTAA-ATCCGGGTTAAGTCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTTGCTAAGTGAC-AATATCCGGACTAAGACCCGAAGGC
* *
81261202 ATTTGTGCGAGTTACTATA
64 AATTGTGCGAGATACTATA
* *
81261221 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81261247 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 57 0.63
80 31 0.34
81 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTTGCTAAGTGACAATATCCGGACTAAGACCCGAAGGCAA
TTGTGCGAGATACTATA
Found at i:81261268 original size:79 final size:78
Alignment explanation
Indices: 81261092--81261278 Score: 198
Period size: 79 Copynumber: 2.4 Consensus size: 78
81261082 CTTGTTGCTA
* * * *
81261092 AGTGACAATATCCGGACTAAGACCCGAAGGCAATTGTGCGAGATACTAATTCCGGGCTAAGCCCG
1 AGTGACTATATCCGG-TTAAGTCCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCG
**
81261157 AAGGCATTTGTGCG
65 AAGGCATTTGAACG
* * * * *
81261171 AGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCC
1 AGTGACTATATCC-GGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CC
81261235 CGAAGGCATTTGAACG
63 CGAAGGCATTTGAACG
* *
81261251 AG-GAGCTATATCCGGTTAAATTCCGAAG
1 AGTGA-CTATATCCGGTTAAGTCCCGAAG
81261279 ATACGTGATT
Statistics
Matches: 89, Mismatches: 15, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
78 2 0.02
79 60 0.67
80 27 0.30
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (78 bp):
AGTGACTATATCCGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGA
AGGCATTTGAACG
Done.