Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 249 of 325
Found at i:81263788 original size:25 final size:25
Alignment explanation
Indices: 81263757--81263806 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
81263747 GTATCCAAGC
81263757 ATAAAAAATAAGAGAAAATTTTCAA
1 ATAAAAAATAAGAGAAAATTTTCAA
81263782 ATAAAAAATAAGAGAAAATTTTCAA
1 ATAAAAAATAAGAGAAAATTTTCAA
81263807 TTTCTATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.64, C:0.04, G:0.08, T:0.24
Consensus pattern (25 bp):
ATAAAAAATAAGAGAAAATTTTCAA
Found at i:81269572 original size:116 final size:118
Alignment explanation
Indices: 81269450--81269722 Score: 354
Period size: 123 Copynumber: 2.3 Consensus size: 118
81269440 CCTAGAATGG
*
81269450 TAGGGCACGATTCCTCGAATTTCCAAACATTGCCTTGCTTTAGAATTT-ATAAAACACGAGTGAA
1 TAGGGCACGATTCCTCGAATTTCCAAACATTGCCTCGCTTTAGAATTTGA-AAAACACGAGTGAA
* *
81269514 ATTCTAAAGGAATATTCAATTA-TTT-CAAACCGGAAATCGAAACCCAGCACGA
65 ATTCTAAAGGAATATTCAATTATTTTACAAACAGAAAATCGAAACCCAGCACGA
*
81269566 TAGGGCACGATTCCTCGAATTTCCAAACGTTGAACATTGCCTCGTTTTAGAATTTGAAAAACACG
1 TAGGGCACGATTCCTCGAATTTCC--A-----AACATTGCCTCGCTTTAGAATTTGAAAAACACG
* *
81269631 AGTGAAATTTTAAAGGAATATTCGATTATTTTGAACAAACAGAAAATCGAAACCCAGCACGA
59 AGTGAAATTCTAAAGGAATATTCAATTATTTT--ACAAACAGAAAATCGAAACCCAGCACGA
* * *
81269693 TAAGGCACGATTCCCCGAATTTTCAAACAT
1 TAGGGCACGATTCCTCGAATTTCCAAACAT
81269723 CAAACATTGC
Statistics
Matches: 136, Mismatches: 9, Indels: 20
0.82 0.05 0.12
Matches are distributed among these distances:
116 24 0.18
118 1 0.01
120 5 0.04
123 55 0.40
124 4 0.03
125 1 0.01
127 46 0.34
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (118 bp):
TAGGGCACGATTCCTCGAATTTCCAAACATTGCCTCGCTTTAGAATTTGAAAAACACGAGTGAAA
TTCTAAAGGAATATTCAATTATTTTACAAACAGAAAATCGAAACCCAGCACGA
Found at i:81269730 original size:127 final size:124
Alignment explanation
Indices: 81269473--81269751 Score: 373
Period size: 127 Copynumber: 2.2 Consensus size: 124
81269463 CTCGAATTTC
* *
81269473 CAAACATTGCCTTGCTTTAGAATTT-ATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTAT
1 CAAACATTGCCTCGTTTTAGAATTTGATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTAT
* * * * *
81269537 TTCAAACCGGAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACGT
66 TTCAAACAGAAAATCGAAACCCAGCACGATAAGGCACGATTCCCCGAATTTCCAAACAT
** * *
81269596 TGAACATTGCCTCGTTTTAGAATTTGA-AAAACACGAGTGAAATTTTAAAGGAATATTCGATTAT
1 CAAACATTGCCTCGTTTTAGAATTTGATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTA-
*
81269660 TTTGAACAAACAGAAAATCGAAACCCAGCACGATAAGGCACGATTCCCCGAATTTTCAAACAT
65 TTT---CAAACAGAAAATCGAAACCCAGCACGATAAGGCACGATTCCCCGAATTTCCAAACAT
81269723 CAAACATTGCCTTCGTTTTAAGGAATTTG
1 CAAACATTGCC-TCGTTTT-A-GAATTTG
81269752 CAGACGAATA
Statistics
Matches: 134, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
123 55 0.41
124 4 0.03
127 60 0.45
128 7 0.05
129 1 0.01
130 7 0.05
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (124 bp):
CAAACATTGCCTCGTTTTAGAATTTGATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTAT
TTCAAACAGAAAATCGAAACCCAGCACGATAAGGCACGATTCCCCGAATTTCCAAACAT
Found at i:81273594 original size:29 final size:30
Alignment explanation
Indices: 81273537--81273604 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
81273527 CACCCTTAAA
* * * *
81273537 ATATTTTCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTC
*
81273567 ATATTTACACT-TTAATCCCTCAAATTTTG
1 ATATTTACACTATTAATCCCTCAAATTTTC
81273596 AGTATTTAC
1 A-TATTTAC
81273605 TCTTGGGCCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.28, C:0.21, G:0.04, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCCTCAAATTTTC
Found at i:81275004 original size:46 final size:45
Alignment explanation
Indices: 81274933--81275148 Score: 179
Period size: 46 Copynumber: 4.8 Consensus size: 45
81274923 TCTACTACAA
* * *
81274933 CTGCTCCACTGCAACTTCAGGGAGATACGGTTCGTGTATTTTTATC
1 CTGCTCTACTGCAACTTCAGGGAGATAAGGTT-GTGTAATTTTATC
* ** **
81274979 CTGCTCTACTGCAACTTCAGAGAGATAAGGATTGTG-GCTTCGAT-
1 CTGCTCTACTGCAACTTCAGGGAGATAAGG-TTGTGTAATTTTATC
* * * * * * *
81275023 CTACTCCACTGCAACTTC-GGGAGATAAGATCTG-CTAACTTCAGC
1 CTGCTCTACTGCAACTTCAGGGAGATAAGGT-TGTGTAATTTTATC
* * *
81275067 CTGCTCTACTACAACTTCAGGGAGATAAGACTTGGGTAATTTTATC
1 CTGCTCTACTGCAACTTCAGGGAGATAAG-GTTGTGTAATTTTATC
* *
81275113 CTGCTCTACTGCAACTTCAGAGAAATAAGGATTGTG
1 CTGCTCTACTGCAACTTCAGGGAGATAAGG-TTGTG
81275149 GCTTCGATTT
Statistics
Matches: 131, Mismatches: 31, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
42 1 0.01
43 13 0.10
44 31 0.24
45 16 0.12
46 68 0.52
47 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (45 bp):
CTGCTCTACTGCAACTTCAGGGAGATAAGGTTGTGTAATTTTATC
Found at i:81275164 original size:134 final size:135
Alignment explanation
Indices: 81274933--81275235 Score: 448
Period size: 134 Copynumber: 2.3 Consensus size: 135
81274923 TCTACTACAA
* * * * *
81274933 CTGCTCCACTGCAACTTCAGGGAGATACG-GTTCGTGTATTTTTATCCTGCTCTACTGCAACTTC
1 CTGCTCCACTACAACTTCAGGGAGATAAGACTT-GGGTAATTTTATCCTGCTCTACTGCAACTTC
* * *
81274997 AGAGAGATAAGGATTGTGGCTTCGATCTACTCCACTGCAACTTC-GGGAGATAAGATCTGCTAAC
65 AGAGAAATAAGGATTGTGGCTTCGATCTACTCCACTACAACTTCAGGGAGACAAGATCTGCTAAC
81275061 TTCAGC
130 TTCAGC
*
81275067 CTGCTCTACTACAACTTCAGGGAGATAAGACTTGGGTAATTTTATCCTGCTCTACTGCAACTTCA
1 CTGCTCCACTACAACTTCAGGGAGATAAGACTTGGGTAATTTTATCCTGCTCTACTGCAACTTCA
* * *
81275132 GAGAAATAAGGATTGTGGCTTCGATTTGCTCCACTACAACTTCAGGGAGACAAGATCTGCTATCT
66 GAGAAATAAGGATTGTGGCTTCGATCTACTCCACTACAACTTCAGGGAGACAAGATCTGCTAACT
*
81275197 TCAGT
131 TCAGC
* *
81275202 CTGCTCCACTACAACTTCAGGAAGATGAGACTTG
1 CTGCTCCACTACAACTTCAGGGAGATAAGACTTG
81275236 CTACTTCAAC
Statistics
Matches: 151, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
134 95 0.63
135 56 0.37
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (135 bp):
CTGCTCCACTACAACTTCAGGGAGATAAGACTTGGGTAATTTTATCCTGCTCTACTGCAACTTCA
GAGAAATAAGGATTGTGGCTTCGATCTACTCCACTACAACTTCAGGGAGACAAGATCTGCTAACT
TCAGC
Found at i:81275270 original size:135 final size:135
Alignment explanation
Indices: 81274989--81275274 Score: 375
Period size: 135 Copynumber: 2.1 Consensus size: 135
81274979 CTGCTCTACT
* *
81274989 GCAACTTCAGAGAG-ATAAGGATTGTGGCTTCGATCTACTCCACTGCAACTTCGGGAGATAAGAT
1 GCAACTTCAGAGAGAATAAGGATTGTGGCTTCGATCTACTCCACTACAACTTCGGGAGACAAGAT
* * * * * * **
81275053 CTGCTAACTTCAGCCTGCTCTACTACAACTTCAGGGAGATAAGACTTGGGTAATTTTATCCTGCT
66 CTGCTAACTTCAGCCTGCTCCACTACAACTTCAGGAAGATAAGACTTGGCTAACTTCAACCCACT
* *
81275118 CTACT
131 CAACC
* *
81275123 GCAACTTCAGAGA-AATAAGGATTGTGGCTTCGATTTGCTCCACTACAACTTCAGGGAGACAAGA
1 GCAACTTCAGAGAGAATAAGGATTGTGGCTTCGATCTACTCCACTACAACTTC-GGGAGACAAGA
* * *
81275187 TCTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGAAGATGAGACTT-GCT-ACTTCAACCCAC
65 TCTGCTAACTTCAGCCTGCTCCACTACAACTTCAGGAAGATAAGACTTGGCTAACTTCAACCCAC
81275250 TCAACC
130 TCAACC
81275256 GCAACTTCAGAGAG-ATAAG
1 GCAACTTCAGAGAGAATAAG
81275275 TTTGCTATGA
Statistics
Matches: 132, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
133 29 0.22
134 50 0.38
135 53 0.40
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (135 bp):
GCAACTTCAGAGAGAATAAGGATTGTGGCTTCGATCTACTCCACTACAACTTCGGGAGACAAGAT
CTGCTAACTTCAGCCTGCTCCACTACAACTTCAGGAAGATAAGACTTGGCTAACTTCAACCCACT
CAACC
Found at i:81290365 original size:127 final size:124
Alignment explanation
Indices: 81290061--81290384 Score: 429
Period size: 123 Copynumber: 2.6 Consensus size: 124
81290051 AACAAAAAAC
* * * * *
81290061 CGAAACCCAGCATGGTAGGGCACAATTCCTCGAATTTCTAAACATTGAACATTGCCTTGCTTTAG
1 CGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGTTTTAG
81290126 AATTT-ATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTATTTCAAACCGGAAAT
66 AATTTGATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTATTTCAAACCGGAAAT
* *
81290184 CGAAACCCAGCACGATAGGGCATGATTCCTCGAATTTCCAAACGTTGAACATTGCCTTGTTTTAG
1 CGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGTTTTAG
* *
81290249 AATTTGA-AAAACACGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAA-CGAGATAT
66 AATTTGATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTA-TTT---CAAACCG-GAAAT
* * * **
81290311 CGAAACTCAGCACGATAGGGTACGATTCCCCGAATTTCCAAACATCAAACATTGCCTTCGTTTTA
1 CGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTT-GTTTT-
81290376 AGGAATTTG
64 A-GAATTTG
81290385 CAGACGAATA
Statistics
Matches: 176, Mismatches: 16, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
123 98 0.56
124 4 0.02
126 2 0.01
127 59 0.34
128 5 0.03
129 1 0.01
130 7 0.04
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.28
Consensus pattern (124 bp):
CGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGCCTTGTTTTAG
AATTTGATAAAACACGAGTGAAATTCTAAAGGAATATTCAATTATTTCAAACCGGAAAT
Found at i:81293776 original size:18 final size:19
Alignment explanation
Indices: 81293750--81293794 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
81293740 AAGCCTATTG
* *
81293750 TTTTCATAAATTT-TTATA
1 TTTTTATAAATTTCTAATA
81293768 TTTTTAT-AATTTCTAATA
1 TTTTTATAAATTTCTAATA
81293786 TTTTT-TAAA
1 TTTTTATAAA
81293795 ACTTTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 6 0.26
18 17 0.74
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTTATAAATTTCTAATA
Found at i:81294082 original size:9 final size:9
Alignment explanation
Indices: 81294068--81294303 Score: 89
Period size: 10 Copynumber: 23.9 Consensus size: 9
81294058 ATTTTATTAC
81294068 ATTTTTATA
1 ATTTTTATA
81294077 ATTTTTATA
1 ATTTTTATA
81294086 ACTTTTTAATA
1 A-TTTTT-ATA
* *
81294097 CTTTTAATA
1 ATTTTTATA
81294106 AGTTTTTATA
1 A-TTTTTATA
*
81294116 ACTTTTTAAA
1 A-TTTTTATA
81294126 ATTAATTTATA
1 ATT--TTTATA
81294137 TATATTTATATA
1 -AT-TTT-TATA
81294149 ATTTCTTAT-
1 ATTT-TTATA
* *
81294158 AGTTTTATT
1 ATTTTTATA
*
81294167 TTATTTTATA
1 AT-TTTTATA
* *
81294177 AGTTCTATA
1 ATTTTTATA
*
81294186 ATTTTATATT
1 ATTTT-TATA
*
81294196 ATTTATATA
1 ATTTTTATA
*
81294205 ATAGTTTGATA
1 AT--TTTTATA
*
81294216 TCTTTTTCATAA
1 -ATTTTT-AT-A
* *
81294228 CATATTAATA
1 -ATTTTTATA
81294238 ATATTTTATA
1 AT-TTTTATA
81294248 ATTTTTTATA
1 A-TTTTTATA
81294258 ATTTTT-TA
1 ATTTTTATA
*
81294266 ATATTTAATA
1 AT-TTTTATA
**
81294276 ACATTTATA
1 ATTTTTATA
*
81294285 GTTTTTCTATA
1 -ATTTT-TATA
81294296 ATTTTTAT
1 ATTTTTAT
81294304 TTTTTCCAAG
Statistics
Matches: 167, Mismatches: 37, Indels: 46
0.67 0.15 0.18
Matches are distributed among these distances:
8 8 0.05
9 50 0.30
10 70 0.42
11 27 0.16
12 11 0.07
13 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.59
Consensus pattern (9 bp):
ATTTTTATA
Found at i:81294082 original size:20 final size:20
Alignment explanation
Indices: 81294059--81294123 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
81294049 TTTTCTACAA
81294059 TTTTATTACATTTTTATAAT
1 TTTTATTACATTTTTATAAT
* *
81294079 TTTTATAAC-TTTTTA-ATAC
1 TTTTATTACATTTTTATA-AT
*
81294098 TTTTAATA-AGTTTTTATAACT
1 TTTTATTACA-TTTTTATAA-T
81294119 TTTTA
1 TTTTA
81294124 AAATTAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 9
0.71 0.10 0.18
Matches are distributed among these distances:
18 1 0.03
19 13 0.37
20 15 0.43
21 6 0.17
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.62
Consensus pattern (20 bp):
TTTTATTACATTTTTATAAT
Found at i:81294112 original size:30 final size:30
Alignment explanation
Indices: 81294059--81294124 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
81294049 TTTTCTACAA
* *
81294059 TTTTATTACATTTTTATAATTTTTATAACT
1 TTTTAATACATTTTAATAATTTTTATAACT
81294089 TTTTAATAC-TTTTAATAAGTTTTTATAACT
1 TTTTAATACATTTTAATAA-TTTTTATAACT
81294119 TTTTAA
1 TTTTAA
81294125 AATTAATTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 8 0.24
30 25 0.76
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.61
Consensus pattern (30 bp):
TTTTAATACATTTTAATAATTTTTATAACT
Found at i:81294152 original size:19 final size:18
Alignment explanation
Indices: 81294128--81294206 Score: 63
Period size: 19 Copynumber: 4.2 Consensus size: 18
81294118 TTTTTAAAAT
81294128 TAATTTATATATATTTATA
1 TAATTT-TATATATTTATA
*
81294147 TAATTTCT-TATAGTTTTATT
1 TAATTT-TATATA--TTTATA
* * *
81294167 TTATTTTATA-AGTTCTA
1 TAATTTTATATATTTATA
81294184 TAATTTTATATTATTTATA
1 TAATTTTATA-TATTTATA
81294203 TAAT
1 TAAT
81294207 AGTTTGATAT
Statistics
Matches: 46, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
17 12 0.26
18 4 0.09
19 18 0.39
20 12 0.26
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (18 bp):
TAATTTTATATATTTATA
Found at i:81294204 original size:28 final size:29
Alignment explanation
Indices: 81294131--81294205 Score: 100
Period size: 27 Copynumber: 2.6 Consensus size: 29
81294121 TTAAAATTAA
* *
81294131 TTTATATATATTTATATAATTTCTTATAGT
1 TTTATAT-TATTTATATAAGTTCTTATAAT
*
81294161 TTTATTTTATTT-TATAAGTTC-TATAAT
1 TTTATATTATTTATATAAGTTCTTATAAT
81294188 TTTATATTATTTATATAA
1 TTTATATTATTTATATAA
81294206 TAGTTTGATA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
27 16 0.40
28 13 0.32
29 5 0.12
30 6 0.15
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (29 bp):
TTTATATTATTTATATAAGTTCTTATAAT
Found at i:81294302 original size:20 final size:19
Alignment explanation
Indices: 81294069--81294303 Score: 107
Period size: 20 Copynumber: 11.8 Consensus size: 19
81294059 TTTTATTACA
81294069 TTTTTATAATTTTTATAACT
1 TTTTTATAATTTTTATAA-T
* * * *
81294089 TTTTAATACTTTTAATAAG
1 TTTTTATAATTTTTATAAT
*
81294108 TTTTTATAACTTTTTAAAAT
1 TTTTTATAA-TTTTTATAAT
*
81294128 TAATTTATATATATTTATATAAT
1 T--TTT-TATA-ATTTTTATAAT
* * *
81294151 TTCTTAT-AGTTTTAT-TT
1 TTTTTATAATTTTTATAAT
* *
81294168 TATTTTATAAGTTCTATAAT
1 T-TTTTATAATTTTTATAAT
* * *
81294188 TTTATATTATTTATATAAT
1 TTTTTATAATTTTTATAAT
* * * *
81294207 AGTTTGATATCTTTTTCATAACA
1 -TTTTTATA-ATTTTT-ATAA-T
* *
81294230 TATTAATAATATTTTATAAT
1 TTTTTATAAT-TTTTATAAT
81294250 TTTTTATAATTTTT-TAAT
1 TTTTTATAATTTTTATAAT
* * ** *
81294268 ATTTAATAACATTTATAGT
1 TTTTTATAATTTTTATAAT
81294287 TTTTCTATAATTTTTAT
1 TTTT-TATAATTTTTAT
81294304 TTTTTCCAAG
Statistics
Matches: 155, Mismatches: 45, Indels: 30
0.67 0.20 0.13
Matches are distributed among these distances:
17 2 0.01
18 25 0.16
19 38 0.25
20 49 0.32
21 11 0.07
22 16 0.10
23 13 0.08
24 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.59
Consensus pattern (19 bp):
TTTTTATAATTTTTATAAT
Found at i:81297465 original size:21 final size:22
Alignment explanation
Indices: 81297439--81297485 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
81297429 CTCTGCTCAA
*
81297439 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
81297460 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
81297482 ACTC
1 ACTC
81297486 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:81300775 original size:16 final size:16
Alignment explanation
Indices: 81300726--81300768 Score: 68
Period size: 16 Copynumber: 2.6 Consensus size: 16
81300716 TTATTTATAT
*
81300726 TTATTCATATAATAAA
1 TTATTAATATAATAAA
81300742 TTATTAATATAATAAA
1 TTATTAATATAATAAA
81300758 TTATTTAATAT
1 TTA-TTAATAT
81300769 TTAAATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 18 0.72
17 7 0.28
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (16 bp):
TTATTAATATAATAAA
Found at i:81300795 original size:14 final size:15
Alignment explanation
Indices: 81300778--81300817 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 15
81300768 TTTAAATTTT
81300778 ATTTTAAAAATAA-A
1 ATTTTAAAAATAATA
81300792 A-TTTAAAAA-AATA
1 ATTTTAAAAATAATA
81300805 ATTTTAAATAATA
1 ATTTTAAA-AATA
81300818 TTTATTACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
12 2 0.09
13 10 0.45
14 7 0.32
15 2 0.09
16 1 0.05
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATTTTAAAAATAATA
Found at i:81304078 original size:17 final size:17
Alignment explanation
Indices: 81304056--81304103 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
81304046 TTCTGATTTT
81304056 TATTTTTATTTTTTTGA
1 TATTTTTATTTTTTTGA
** *
81304073 TATTTTTAAATTTCTGA
1 TATTTTTATTTTTTTGA
81304090 -ATTTTGTATTTTTT
1 TATTTT-TATTTTTT
81304104 AAAATTTTCT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
16 5 0.21
17 19 0.79
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.71
Consensus pattern (17 bp):
TATTTTTATTTTTTTGA
Found at i:81304379 original size:20 final size:21
Alignment explanation
Indices: 81304329--81304380 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
81304319 CTTCCTTTTG
81304329 TTTTTAAAATTTTTTGAGATT
1 TTTTTAAAATTTTTTGAGATT
*
81304350 TTTTT-GAATTTTTTG-G-TT
1 TTTTTAAAATTTTTTGAGATT
81304368 ATTTTTAAAATTT
1 -TTTTTAAAATTT
81304381 ATTTCAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.07
19 6 0.22
20 14 0.52
21 5 0.19
ACGTcount: A:0.25, C:0.00, G:0.10, T:0.65
Consensus pattern (21 bp):
TTTTTAAAATTTTTTGAGATT
Found at i:81312828 original size:82 final size:81
Alignment explanation
Indices: 81312712--81312867 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
81312702 AAATTGTACA
* * * *
81312712 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
81312776 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81312793 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
81312858 TGCGAGTTGA
65 TGCGAATTGA
81312868 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81312835 original size:55 final size:52
Alignment explanation
Indices: 81312711--81312864 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
81312701 TAAATTGTAC
* *
81312711 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
81312764 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
81312819 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
81312865 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:81312869 original size:27 final size:27
Alignment explanation
Indices: 81312712--81312867 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
81312702 AAATTGTACA
*
81312712 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
81312739 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
81312766 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
81312793 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
81312821 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
81312848 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
81312868 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:81312878 original size:27 final size:27
Alignment explanation
Indices: 81312704--81312888 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
81312694 GCGGGATTAA
*
81312704 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
81312731 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
81312758 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
81312785 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
81312813 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
81312840 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
81312867 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
81312889 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:81312879 original size:82 final size:81
Alignment explanation
Indices: 81312704--81312888 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
81312694 GCGGGATTAA
* * * *
81312704 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
81312769 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
81312785 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
81312849 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
81312867 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
81312889 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:81320936 original size:82 final size:81
Alignment explanation
Indices: 81320820--81320975 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
81320810 AAATTGTACA
* * * *
81320820 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
81320884 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81320901 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
81320966 TGCGAGTTGA
65 TGCGAATTGA
81320976 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81320943 original size:55 final size:52
Alignment explanation
Indices: 81320819--81320972 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
81320809 TAAATTGTAC
* *
81320819 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
81320872 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
81320927 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
81320973 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:81320977 original size:27 final size:27
Alignment explanation
Indices: 81320820--81320975 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
81320810 AAATTGTACA
*
81320820 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
81320847 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
81320874 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
81320901 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
81320929 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
81320956 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
81320976 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:81320986 original size:27 final size:27
Alignment explanation
Indices: 81320812--81320996 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
81320802 GCGGGATTAA
*
81320812 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
81320839 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
81320866 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
81320893 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
81320921 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
81320948 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
81320975 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
81320997 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:81320987 original size:82 final size:81
Alignment explanation
Indices: 81320812--81320996 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
81320802 GCGGGATTAA
* * * *
81320812 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
81320877 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
81320893 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
81320957 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
81320975 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
81320997 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:81324476 original size:56 final size:56
Alignment explanation
Indices: 81324390--81324509 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
81324380 ACAAGGGATG
81324390 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
81324446 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGT
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
81324502 ATGGGCAA
1 ATGGGCAA
81324510 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.45, C:0.08, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:81326037 original size:49 final size:47
Alignment explanation
Indices: 81325958--81326602 Score: 935
Period size: 47 Copynumber: 13.6 Consensus size: 47
81325948 TATTTGAATA
*
81325958 AATGTGAAAGTGTATATATGTGATAAGGCCTAAAT-GCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCC-GAATGGCCAATGTGATG
*
81326005 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
81326054 AATGTAAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
81326103 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
81326150 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
81326199 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
81326246 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
81326295 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
81326342 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
81326389 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
81326436 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGG-CAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
81326482 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
81326529 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
81326576 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
81326603 TCCCGAAGGG
Statistics
Matches: 559, Mismatches: 29, Indels: 20
0.92 0.05 0.03
Matches are distributed among these distances:
46 43 0.08
47 334 0.60
48 3 0.01
49 178 0.32
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:81326067 original size:96 final size:94
Alignment explanation
Indices: 81325958--81326602 Score: 935
Period size: 96 Copynumber: 6.8 Consensus size: 94
81325948 TATTTGAATA
*
81325958 AATGTGAAAGTGTATATATGTGATAAGGCCTAAAT-GCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCC-GAATGGCCAATGTGATGAATGTGAAAGTG--TAT
*
81326022 ATATGTGATAAGGCCTAATGGCCAATGTGATG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
81326054 AATGTAAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
81326119 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
81326150 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
81326215 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
81326246 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
81326310 ATGTGTGATAAGGCCGAATGGCCAATGTGATG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
81326342 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
81326405 TGTGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
81326436 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGG-CAATGTGATGAATGTGAACA-TGCATA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
81326498 TATGAGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
81326529 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
81326594 TGTGATAAG
66 TGTGATAAG
81326603 TCCCGAAGGG
Statistics
Matches: 515, Mismatches: 26, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.00
93 86 0.17
94 142 0.28
96 240 0.47
97 5 0.01
98 41 0.08
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:81330542 original size:19 final size:20
Alignment explanation
Indices: 81330515--81330553 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
81330505 GACCAGGTTT
81330515 AAGGATTTTTAGGGT-TTTA
1 AAGGATTTTTAGGGTATTTA
*
81330534 AAGGGTTTTTAGGGTATTTA
1 AAGGATTTTTAGGGTATTTA
81330554 TCTTTTAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (20 bp):
AAGGATTTTTAGGGTATTTA
Found at i:81332730 original size:128 final size:127
Alignment explanation
Indices: 81332553--81332784 Score: 322
Period size: 128 Copynumber: 1.8 Consensus size: 127
81332543 CATGCACTGA
* * *
81332553 AATTTTAAAAGGATATTCGGTTATTTGGTCAAACGACAAATCGACACCCAGCACATTAGGGTACG
1 AATTTTAAAAGGATATTCGGTCATTTGGTCAAACGACAAATCGAAACCCAGCACATTAGGGCACG
* *
81332618 ATTTCTCGAACTTCCAAACACGAAATATTGCCTTGTTTTCTAATTGAAGAAATCACAAACGG
66 ATTTCTCGAACTTACAAACACGAAATATTGCCTTATTTTCTAATTGAAGAAATCACAAACGG
* * * * *
81332680 AATTTTAAAAAGGGTATTTGGTCATTTGGTTAAACAGA-AAATTGAAACCCAGCACGTTAGGGCA
1 AATTTT-AAAAGGATATTCGGTCATTTGGTCAAAC-GACAAATCGAAACCCAGCACATTAGGGCA
* * *
81332744 TGATTTCTCGAATTTACAAACATGAAATATTGCCTTATTTT
64 CGATTTCTCGAACTTACAAACACGAAATATTGCCTTATTTT
81332785 GAGAACTTTT
Statistics
Matches: 90, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
127 6 0.07
128 82 0.91
129 2 0.02
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (127 bp):
AATTTTAAAAGGATATTCGGTCATTTGGTCAAACGACAAATCGAAACCCAGCACATTAGGGCACG
ATTTCTCGAACTTACAAACACGAAATATTGCCTTATTTTCTAATTGAAGAAATCACAAACGG
Found at i:81335814 original size:133 final size:133
Alignment explanation
Indices: 81335647--81335963 Score: 433
Period size: 133 Copynumber: 2.4 Consensus size: 133
81335637 TACCTCAGAA
* * * *
81335647 AGATAATA-CTACAATCTTCAACATGTTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAA
1 AGATAAGATCTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGATGGCTAAA
* * * * *
81335711 CTCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCCTCTTCGATCTACTTCATTACTGCTTA
66 ATCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCCTCTTCAATCTACTCCACTAATGCTTA
81335776 GGG
131 GGG
* *
81335779 AGATAAGATCTACAATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAAGCTGATGGCTAAA
1 AGATAAGATCTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGATGGCTAAA
* *
81335844 ATCTACTCCCCTACTACCTCGGGAAGATACGATTCGCCCTCTTCAATCTGCTCCACTAATGCTTA
66 ATCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCCTCTTCAATCTACTCCACTAATGCTTA
81335909 GGG
131 GGG
* * ** *
81335912 AGAGAAGATCTACAATCCTCAGTCTGCT-TCCTTACTACCTCAG-GAAGATAAG
1 AGATAAGATCTACAATCTTCAACCTGCTCT-CTTGCTACCTCAGAG-AGATAAG
81335964 ACTACAATCC
Statistics
Matches: 162, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
132 9 0.06
133 153 0.94
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (133 bp):
AGATAAGATCTACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGATGGCTAAA
ATCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCCTCTTCAATCTACTCCACTAATGCTTA
GGG
Found at i:81335815 original size:177 final size:177
Alignment explanation
Indices: 81335448--81335829 Score: 439
Period size: 177 Copynumber: 2.2 Consensus size: 177
81335438 GATTCGCTGT
* * * *
81335448 CTGCTCTCTTGCTACCTCAAGAAA-ATGAGACTACAATCTCCAGCCTGCTCCCTTGCTACCTTAG
1 CTGCTCTCTTGCTACCTC-AGAAAGATAAGACTACAATCTCCAACATGCTCCCTTGCTACCTCAG
* * * *
81335512 GGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCGCCATTTT
65 AGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCATCTT
* * ** * **
81335577 TGATCTGTCCCATTGTTATCTCAAGGAGACAAGATCTACATCATCAGT
130 CGATCTCTCCCATTACTAGCTCAAGGAGACAAGATCTACATCATCAAC
* * * *
81335625 CTGCT-TCCTTGCTACCTCAGAAAGATAATACTACAATCTTCAACATGTTCTCTTGCTACCTCAG
1 CTGCTCT-CTTGCTACCTCAGAAAGATAAGACTACAATCTCCAACATGCTCCCTTGCTACCTCAG
* * *
81335689 AGAGATAAGGCTGGTGGCTAAACTCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCCTCTT
65 AGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCATCTT
* * * * *
81335754 CGATCTACT-TCATTACT-GCTTAGGGAGATAAGATCTACAATCTTCAAC
130 CGATCT-CTCCCATTACTAGCTCAAGGAGACAAGATCTAC-ATCATCAAC
* *
81335802 CTGCTCTCTTGCTACCTTAGAGAGATAA
1 CTGCTCTCTTGCTACCTCAGAAAGATAA
81335830 AGCTGATGGC
Statistics
Matches: 171, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
176 23 0.13
177 146 0.85
178 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (177 bp):
CTGCTCTCTTGCTACCTCAGAAAGATAAGACTACAATCTCCAACATGCTCCCTTGCTACCTCAGA
GAGATAAGGCTAGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGATAAGATTCGCCATCTTC
GATCTCTCCCATTACTAGCTCAAGGAGACAAGATCTACATCATCAAC
Found at i:81335969 original size:44 final size:45
Alignment explanation
Indices: 81335911--81336007 Score: 119
Period size: 44 Copynumber: 2.2 Consensus size: 45
81335901 AATGCTTAGG
* **
81335911 GAGAGAAGATCTACAATCCTCAGTCTGCT-TCCTTACTACCTCAG-
1 GAGATAAGATCTACAATCCTCAACCTGCTCT-CTTACTACCTCAGA
*
81335955 GAAGATAAGA-CTACAATCCTCAACCTGCTCTCTTGCTACCTCAGA
1 G-AGATAAGATCTACAATCCTCAACCTGCTCTCTTACTACCTCAGA
81336000 GAGATAAG
1 GAGATAAG
81336008 GCTGGTGGCT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
44 37 0.80
45 9 0.20
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (45 bp):
GAGATAAGATCTACAATCCTCAACCTGCTCTCTTACTACCTCAGA
Found at i:81336040 original size:310 final size:309
Alignment explanation
Indices: 81335478--81336140 Score: 859
Period size: 310 Copynumber: 2.1 Consensus size: 309
81335468 GAAAATGAGA
* * * *
81335478 CTACAATCTCCAGCCTGCTCCCTTGCTACCTTAGGGAGATAAGGCTAGTGGCTAAAATCTGCTCC
1 CTACAATCTTCAGCCTGCTCTCTTGCTACCTTA-GGAGATAAAGCTAGTGGCTAAAATCTACTCC
* * ** * *
81335543 CCTGCTACCTCGGGAAGATAAGATTCGCCATTTTTGATCTGTCCCATTGTTATCTCAAGGAGACA
65 CCTACTACCTCGGGAAGATAAGATTCGCCATCTTCAATCTGTCCCA-TCTAATCTCAAGGAGACA
* * * *
81335608 AGATCTACATCATCAGTCTGCTTCCTTGCTACCTCAGAAAGATAATACTACAATCTTCAACATGT
129 AGATCTACATCATCAGTCTGCTTCCTTACTACCTCAGAAAGATAAGACTACAATCCTCAACATGC
*
81335673 TCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAACTCTACTCCCCTACTACCTCGGGAAGA
194 TCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGA
* * * * *
81335738 TAAGATTCGCCCTCTTCGATCTACTTCATTACT-GCTTAGGGAGATAAGAT
259 TAAGATTCACCCTCCTCGATCTACTCCACTACTAGCTCAGGGAGATAAGAT
*
81335788 CTACAATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAAGCT-GATGGCTAAAATCTACTC
1 CTACAATCTTCAGCCTGCTCTCTTGCTACCTTAG-GAGATAAAGCTAG-TGGCTAAAATCTACTC
* * * *
81335852 CCCTACTACCTCGGGAAGATACGATTCGCCCTCTTCAATCTG-CTCCA-CTAATGCTTAGGGAGA
64 CCCTACTACCTCGGGAAGATAAGATTCGCCATCTTCAATCTGTC-CCATCTAAT-CTCAAGGAGA
* * * *
81335915 GAAGATCTACAATCCTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAGACTACAATCCTCAACC
127 CAAGATCTAC-ATCATCAGTCTGCTTCCTTACTACCTCAGAAAGATAAGACTACAATCCTCAACA
* *
81335980 TGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGA
191 TGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCCCCTACTACCTCGGGA
* * * *
81336045 AGATAAGATTCACCGTCCTCGATCTGCTCCACTACTATCTCAGGGAGATGAGAT
256 AGATAAGATTCACCCTCCTCGATCTACTCCACTACTAGCTCAGGGAGATAAGAT
** * *
81336099 CTTTAATCTTCAGTCTACT-TCTTTGCTACCTTAGGAAGATAA
1 CTACAATCTTCAGCCTGCTCTC-TTGCTACCTTAGG-AGATAA
81336141 GACTACAATC
Statistics
Matches: 305, Mismatches: 40, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
308 3 0.01
309 20 0.07
310 236 0.77
311 46 0.15
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (309 bp):
CTACAATCTTCAGCCTGCTCTCTTGCTACCTTAGGAGATAAAGCTAGTGGCTAAAATCTACTCCC
CTACTACCTCGGGAAGATAAGATTCGCCATCTTCAATCTGTCCCATCTAATCTCAAGGAGACAAG
ATCTACATCATCAGTCTGCTTCCTTACTACCTCAGAAAGATAAGACTACAATCCTCAACATGCTC
TCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCCCCTACTACCTCGGGAAGATA
AGATTCACCCTCCTCGATCTACTCCACTACTAGCTCAGGGAGATAAGAT
Found at i:81336176 original size:178 final size:178
Alignment explanation
Indices: 81335757--81336278 Score: 701
Period size: 178 Copynumber: 2.9 Consensus size: 178
81335747 CCCTCTTCGA
* * * *
81335757 TCTACTTCATTACT-GCTTAGGGAGATAAGATCTACAATCTTCAACCTGCTCTCTTGCTACCTTA
1 TCTACTTCCTTACTACCTTAGGAAGATAAGA-CTACAATCTTCAACCTGCTCTCTTGCTACCTCA
* * * * * * *
81335821 GAGAGATAAAGCTGATGGCTAAAATCTACTCCCCTACTACCTCGGGAAGATACGATTCGCCCTCT
65 GAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCACCATCT
* *
81335886 TCAATCTGCTCCACTA--ATGCTTAGGGAGA-GAAGATCTACAATCCTCAG
130 TCGATCTGCTCCACTACTAT-CTCAGGGAGATG-AGATCTACAATCCTCAG
* * *
81335934 TCTGCTTCCTTACTACCTCAGGAAGATAAGACTACAATCCTCAACCTGCTCTCTTGCTACCTCAG
1 TCTACTTCCTTACTACCTTAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAG
* *
81335999 AGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCACCGTCCT
66 AGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCACCATCTT
** *
81336064 CGATCTGCTCCACTACTATCTCAGGGAGATGAGATCTTTAATCTTCAG
131 CGATCTGCTCCACTACTATCTCAGGGAGATGAGATCTACAATCCTCAG
* * *
81336112 TCTACTTCTTTGCTACCTTAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTACTACCTCAG
1 TCTACTTCCTTACTACCTTAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAG
* **
81336177 ATAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGAAAAGATAAGATTCACCATCTT
66 AGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCACCATCTT
* * * * *
81336242 CGATTTGCTCCACTGCTACCTCATGGAGATAAGATCT
131 CGATCTGCTCCACTACTATCTCAGGGAGATGAGATCT
81336279 GTGAATCCAC
Statistics
Matches: 305, Mismatches: 36, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
177 115 0.38
178 187 0.61
179 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (178 bp):
TCTACTTCCTTACTACCTTAGGAAGATAAGACTACAATCTTCAACCTGCTCTCTTGCTACCTCAG
AGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCACCATCTT
CGATCTGCTCCACTACTATCTCAGGGAGATGAGATCTACAATCCTCAG
Found at i:81336251 original size:89 final size:89
Alignment explanation
Indices: 81335979--81336251 Score: 239
Period size: 89 Copynumber: 3.1 Consensus size: 89
81335969 AATCCTCAAC
* *
81335979 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGGG
1 CTGCTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGAG
* *
81336044 AAGATAAGATTCACCGTCCTCGAT
66 AAGATAAGATTCACCATCTTCGAT
* * * * * * ** ** * * * **
81336068 CTGCTC-CACTACTATCTCAGGGAGATGAGATCT-TTAATCTTCAGTCTACTTCTTTGCTACCT-
1 CTGCTCTC-TTACTACCTCAGAGAGATAAG-GCTGGT-GGCTAAAATCTGCTCCCCTGCTACCTC
* * * * *
81336130 TAGGAAGATAAGACT-ACAATCTTCAAC
63 GA-GAAGATAAGATTCACCATCTTCGAT
* *
81336157 CTGCTCTCTTACTACCTCAGATAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGAA
1 CTGCTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGAG
81336222 AAGATAAGATTCACCATCTTCGAT
66 AAGATAAGATTCACCATCTTCGAT
*
81336246 TTGCTC
1 CTGCTC
81336252 CACTGCTACC
Statistics
Matches: 129, Mismatches: 47, Indels: 16
0.67 0.24 0.08
Matches are distributed among these distances:
88 30 0.23
89 68 0.53
90 31 0.24
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (89 bp):
CTGCTCTCTTACTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTCGAG
AAGATAAGATTCACCATCTTCGAT
Found at i:81341063 original size:22 final size:24
Alignment explanation
Indices: 81341018--81341066 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
81341008 GTAAGGCCCC
*
81341018 TTCTCTTGCTGCTGTTCAATTTTCG
1 TTCTCTTGCTGCTGGT-AATTTTCG
81341043 TTCTCTTGCTGCTGGT-A-TTTCG
1 TTCTCTTGCTGCTGGTAATTTTCG
81341065 TT
1 TT
81341067 TCCTTTCTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 7 0.30
23 1 0.04
25 15 0.65
ACGTcount: A:0.06, C:0.22, G:0.18, T:0.53
Consensus pattern (24 bp):
TTCTCTTGCTGCTGGTAATTTTCG
Found at i:81343449 original size:75 final size:75
Alignment explanation
Indices: 81343326--81343475 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
81343316 TATTGGATTG
81343326 TAAGAACACTAGCAAAACAAGAGATCCAGCAATATCAATAACAGAAATACCGAGAAGCAAAGTCT
1 TAAGAACACTAGCAAAACAAGAGATCCAGCAATATCAATAACAGAAATACCGAGAAGCAAAGTCT
81343391 AATAACCTAA
66 AATAACCTAA
81343401 TAAGAACACTAGCAAAACAAGAGATCCAGCAATATCAATAACAGAAATACCGAGAAGCAAAGTCT
1 TAAGAACACTAGCAAAACAAGAGATCCAGCAATATCAATAACAGAAATACCGAGAAGCAAAGTCT
81343466 AATAACCTAA
66 AATAACCTAA
81343476 GGTGACTCGT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.52, C:0.20, G:0.13, T:0.15
Consensus pattern (75 bp):
TAAGAACACTAGCAAAACAAGAGATCCAGCAATATCAATAACAGAAATACCGAGAAGCAAAGTCT
AATAACCTAA
Found at i:81347798 original size:20 final size:20
Alignment explanation
Indices: 81347773--81347811 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
81347763 CATTTCATAT
*
81347773 ATATATCCCGTATATTTTTA
1 ATATATCACGTATATTTTTA
*
81347793 ATATATCATGTATATTTTT
1 ATATATCACGTATATTTTT
81347812 TTTTGTTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.54
Consensus pattern (20 bp):
ATATATCACGTATATTTTTA
Found at i:81347891 original size:25 final size:26
Alignment explanation
Indices: 81347824--81347891 Score: 68
Period size: 25 Copynumber: 2.6 Consensus size: 26
81347814 TTGTTTCTAT
81347824 TATTATATATATATTTTAATACCATATG
1 TATTAT-TAT-TATTTTAATACCATATG
** *
81347852 TATTATTATCGTTTT-ATACTAT-TG
1 TATTATTATTATTTTAATACCATATG
81347876 CTATTATTATTATTTT
1 -TATTATTATTATTTT
81347892 CGTTATCATT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
24 2 0.06
25 19 0.56
26 4 0.12
27 3 0.09
28 6 0.18
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.57
Consensus pattern (26 bp):
TATTATTATTATTTTAATACCATATG
Found at i:81360131 original size:76 final size:75
Alignment explanation
Indices: 81360005--81360327 Score: 420
Period size: 76 Copynumber: 4.3 Consensus size: 75
81359995 TTTTGTTTTC
* **
81360005 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
81360070 GTTGTTAAAAA
66 GTT-TTAAAAA
*
81360081 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
81360146 GTTTT---CA
66 GTTTTAAAAA
* * * *
81360153 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTCTCAATTTC
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAATTTC
81360217 TGTTTTCAAAAA
65 TGTTTT-AAAAA
* ** *** * *
81360229 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCTTTCACATGCTGAGGTATTTTCAATTTC
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGGACACGCTGAGGTAATTTCAATTTC
81360294 TGTTTTTAAAAA
65 TG-TTTTAAAAA
81360306 AAAATCAACTCATATTGCGAGA
1 AAAATCAACTCATATTGCGAGA
81360328 GGTGAGTTTT
Statistics
Matches: 218, Mismatches: 21, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
71 3 0.01
72 62 0.28
75 2 0.01
76 99 0.45
77 46 0.21
78 6 0.03
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (75 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAAA
Found at i:81360259 original size:148 final size:148
Alignment explanation
Indices: 81359992--81360327 Score: 444
Period size: 148 Copynumber: 2.2 Consensus size: 148
81359982 TAAGCCTTTT
* * ** *
81359992 AATTTTTGTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
1 AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
*
81360057 AATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGG
66 AATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCTAGC
81360121 ACATGCTGAGGTAATTTC
131 ACATGCTGAGGTAATTTC
* *
81360139 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
* **
81360204 T-ATTCTCAATTTCTGTT-TTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCT
65 TAATT-TCAATTTCTGTTGTT-AAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCT
** *
81360267 TTCACATGCTGAGGTATTTTC
128 AGCACATGCTGAGGTAATTTC
*
81360288 AATTTCTGTTTTTAAAAAAAAATCAACTCATATTGCGAGA
1 AATTTCTG-TTTT----CAAAATCAACTCATATTGCGAGA
81360328 GGTGAGTTTT
Statistics
Matches: 164, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
147 21 0.13
148 93 0.57
149 25 0.15
150 4 0.02
153 17 0.10
154 4 0.02
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.34
Consensus pattern (148 bp):
AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
AATTTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCTAGC
ACATGCTGAGGTAATTTC
Found at i:81361226 original size:76 final size:76
Alignment explanation
Indices: 81361091--81361288 Score: 275
Period size: 73 Copynumber: 2.7 Consensus size: 76
81361081 TCGTTCAATC
* *
81361091 TTTCTGTTCGTAAAAAAAAAATCAACTCATA-TGCTAGAGGTGAGTT--GCCTCAGGACACGCTG
1 TTTCTGTT-GTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
*
81361153 AGGTAATTTCAA
65 AGGTAATTTAAA
81361165 TTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 TTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
*
81361230 GGTATTTTAAA
66 GGTAATTTAAA
** *
81361241 TTTCTGTT-TT--TCAAAAATCAACTCATATTGCGAGATGTGA-TTGAGCCT
1 TTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
81361289 TGTTCACATG
Statistics
Matches: 114, Mismatches: 7, Indels: 8
0.88 0.05 0.06
Matches are distributed among these distances:
72 8 0.07
73 48 0.42
74 22 0.19
75 2 0.02
76 34 0.30
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (76 bp):
TTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
GGTAATTTAAA
Found at i:81362039 original size:30 final size:29
Alignment explanation
Indices: 81362005--81362180 Score: 192
Period size: 30 Copynumber: 5.8 Consensus size: 29
81361995 ACTTTTCTCA
*
81362005 ACTAGGCCACTCCTTTCCACCACCAACTCC
1 ACTA-GCCACACCTTTCCACCACCAACTCC
81362035 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACC-TTTCCACCACCAACTCC
* *
81362065 ACTAGCCACTCTTTTTTCCA-CACCAACTCC
1 ACTAGCCACAC--CTTTCCACCACCAACTCC
*
81362095 ACTAGCCACACTTTTCCACCACCAAACTCC
1 ACTAGCCACACCTTTCCACCACC-AACTCC
** * *
81362125 ACTAAGCCATTCTTTTTCCACCACTAACTCC
1 ACT-AGCCACAC-CTTTCCACCACCAACTCC
*
81362156 ACTAGCCACACCTTGCTCACCACCA
1 ACTAGCCACACCTTTC-CACCACCA
81362181 CTTGTACCTA
Statistics
Matches: 126, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
28 7 0.06
29 14 0.11
30 73 0.58
31 21 0.17
32 11 0.09
ACGTcount: A:0.26, C:0.46, G:0.05, T:0.23
Consensus pattern (29 bp):
ACTAGCCACACCTTTCCACCACCAACTCC
Found at i:81362089 original size:60 final size:62
Alignment explanation
Indices: 81362005--81362169 Score: 250
Period size: 60 Copynumber: 2.7 Consensus size: 62
81361995 ACTTTTCTCA
* *
81362005 ACTAGGCCACTC-CTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACC-AACTCC
1 ACTAAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAAACTCC
81362065 ACT-AGCCACTCTTTTTTCCA-CACCAACTCCACTAGCCACA-CTTTTCCACCACCAAACTCC
1 ACTAAGCCACTC-TTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAAACTCC
* *
81362125 ACTAAGCCATTCTTTTTCCACCACTAACTCCACTAGCCACACCTT
1 ACTAAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTT
81362170 GCTCACCACC
Statistics
Matches: 95, Mismatches: 4, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
59 20 0.21
60 40 0.42
61 32 0.34
62 3 0.03
ACGTcount: A:0.26, C:0.45, G:0.04, T:0.24
Consensus pattern (62 bp):
ACTAAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAAACTCC
Found at i:81362691 original size:22 final size:22
Alignment explanation
Indices: 81362658--81362736 Score: 65
Period size: 22 Copynumber: 3.5 Consensus size: 22
81362648 TCTTTTTTGT
81362658 TATTAT-TATATTCTAATATTA
1 TATTATATATATTCTAATATTA
** *
81362679 TATTATATATATTCTTTTAATA
1 TATTATATATATTCTAATATTA
*
81362701 TATTA-AGTATATTTTAA-ATTTA
1 TATTATA-TATATTCTAATA-TTA
81362723 TATTACGTATATAT
1 TATTA--TATATAT
81362737 ATATTTTTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
21 8 0.18
22 31 0.69
24 5 0.11
25 1 0.02
ACGTcount: A:0.38, C:0.04, G:0.03, T:0.56
Consensus pattern (22 bp):
TATTATATATATTCTAATATTA
Found at i:81362759 original size:14 final size:13
Alignment explanation
Indices: 81362732--81362796 Score: 53
Period size: 13 Copynumber: 4.8 Consensus size: 13
81362722 ATATTACGTA
*
81362732 TATATATATT-TT
1 TATATATTTTATT
81362744 TATACTATTTTATT
1 TATA-TATTTTATT
81362758 TATATATCTTTAATAT
1 TATATAT-TTT-AT-T
*
81362774 TATAT-TATTTATA
1 TATATAT-TTTATT
81362787 TATATATTTT
1 TATATATTTT
81362797 TCTACATGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
12 4 0.09
13 16 0.36
14 12 0.27
15 6 0.14
16 6 0.14
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (13 bp):
TATATATTTTATT
Found at i:81362858 original size:25 final size:25
Alignment explanation
Indices: 81362810--81362895 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 25
81362800 ACATGTTATC
*
81362810 TTATGTATATA-TCTT-A-ACTATA
1 TTATGTATATATTTTTAACACTATA
*
81362832 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATATTTTTAACACTATA
* *
81362857 TTATGTACATATTTTTAATA-T-TA
1 TTATGTATATATTTTTAACACTATA
* *
81362880 TCATGTATTTATTTTT
1 TTATGTATATATTTTT
81362896 TATATATGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
22 10 0.19
23 18 0.34
24 2 0.04
25 23 0.43
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.56
Consensus pattern (25 bp):
TTATGTATATATTTTTAACACTATA
Found at i:81362892 original size:23 final size:24
Alignment explanation
Indices: 81362812--81362902 Score: 73
Period size: 23 Copynumber: 3.9 Consensus size: 24
81362802 ATGTTATCTT
*
81362812 ATGTATATA-TCTTAACTATAT-T-
1 ATGTATATATTTTTAA-TATATATC
* * *
81362834 ATGTATGTATTTTTAACACTATATT
1 ATGTATATATTTTTAATA-TATATC
*
81362859 ATGTACATATTTTTAATAT-TATC
1 ATGTATATATTTTTAATATATATC
* *
81362882 ATGTATTTATTTTTTATATAT
1 ATGTATATATTTTTAATATAT
81362903 GTACATATTG
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
22 9 0.17
23 27 0.50
24 3 0.06
25 15 0.28
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (24 bp):
ATGTATATATTTTTAATATATATC
Found at i:81362997 original size:11 final size:11
Alignment explanation
Indices: 81362981--81363005 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
81362971 ATGTACATCT
81362981 TTTTATTTTTA
1 TTTTATTTTTA
81362992 TTTTATTTTTA
1 TTTTATTTTTA
81363003 TTT
1 TTT
81363006 GTCAATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:81363053 original size:24 final size:24
Alignment explanation
Indices: 81363017--81363080 Score: 87
Period size: 24 Copynumber: 2.7 Consensus size: 24
81363007 TCAATATTAA
*
81363017 TTAT-TATTCTAATATTTTGATATT
1 TTATATATTTTAATATTTT-ATATT
81363041 TTA-ATATTTTAATATTTTATATT
1 TTATATATTTTAATATTTTATATT
*
81363064 TTATATATTTTATTATT
1 TTATATATTTTAATATT
81363081 CCCATCATTG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
23 8 0.22
24 28 0.78
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (24 bp):
TTATATATTTTAATATTTTATATT
Found at i:81363064 original size:7 final size:8
Alignment explanation
Indices: 81363021--81363080 Score: 77
Period size: 8 Copynumber: 7.5 Consensus size: 8
81363011 TATTAATTAT
*
81363021 TATTCTAA
1 TATTTTAA
*
81363029 TATTTTGA
1 TATTTTAA
81363037 TATTTTAA
1 TATTTTAA
81363045 TATTTTAA
1 TATTTTAA
81363053 TATTTT-A
1 TATTTTAA
81363060 TATTTTATA
1 TATTTTA-A
*
81363069 TATTTTAT
1 TATTTTAA
81363077 TATT
1 TATT
81363081 CCCATCATTG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
7 7 0.15
8 31 0.67
9 8 0.17
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:81365824 original size:20 final size:20
Alignment explanation
Indices: 81365799--81365838 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
81365789 AGCAACAATA
81365799 TTTAATGTGGGAGTGGTTTG
1 TTTAATGTGGGAGTGGTTTG
81365819 TTTAATGTGGGAGTGGTTTG
1 TTTAATGTGGGAGTGGTTTG
81365839 GTTGATGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.40, T:0.45
Consensus pattern (20 bp):
TTTAATGTGGGAGTGGTTTG
Found at i:81365846 original size:20 final size:20
Alignment explanation
Indices: 81365800--81365846 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
81365790 GCAACAATAT
*
81365800 TTAATGTGGGAGTGGTTTGT
1 TTAATGTGGGAGTGGTTTGG
81365820 TTAATGTGGGAGTGGTTTGG
1 TTAATGTGGGAGTGGTTTGG
*
81365840 TTGATGT
1 TTAATGT
81365847 TTAGGCTAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.15, C:0.00, G:0.40, T:0.45
Consensus pattern (20 bp):
TTAATGTGGGAGTGGTTTGG
Found at i:81366280 original size:23 final size:22
Alignment explanation
Indices: 81366237--81366280 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
81366227 ATAAAAAATT
**
81366237 AATATTTTAATAAATGGATAAA
1 AATATTTTAATAAATAAATAAA
*
81366259 AATATTTTATGTAAATAAATAA
1 AATATTTTA-ATAAATAAATAA
81366281 GTTTGATCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.39
Consensus pattern (22 bp):
AATATTTTAATAAATAAATAAA
Found at i:81367029 original size:2 final size:2
Alignment explanation
Indices: 81367022--81367046 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
81367012 ATTTGAATTT
81367022 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
81367047 GAACGCTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81370527 original size:13 final size:13
Alignment explanation
Indices: 81370509--81370533 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81370499 AAAATATTAA
81370509 AAATAAAATAAAT
1 AAATAAAATAAAT
81370522 AAATAAAATAAA
1 AAATAAAATAAA
81370534 ACAAAATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAATAAAATAAAT
Found at i:81378594 original size:20 final size:19
Alignment explanation
Indices: 81378560--81378598 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
81378550 TAACATTATT
81378560 ATTAAATACAATTTAATAA
1 ATTAAATACAATTTAATAA
*
81378579 ATTAATATATAATTTAATAA
1 ATTAA-ATACAATTTAATAA
81378599 TATTCTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTAAATACAATTTAATAA
Found at i:81380031 original size:40 final size:40
Alignment explanation
Indices: 81379971--81380154 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
81379961 TATTCGAATG
* *
81379971 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * *
81380011 ATATCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* * *
81380051 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
81380091 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
81380131 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
81380155 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 120 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:81380104 original size:80 final size:80
Alignment explanation
Indices: 81379971--81380190 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
81379961 TATTCGAATG
* * * * *
81379971 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCTGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
* *
81380035 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
*
81380051 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
*
81380115 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
* * *
81380131 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAG
81380191 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
78 14 0.11
79 20 0.16
80 89 0.72
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:81385863 original size:17 final size:19
Alignment explanation
Indices: 81385832--81385868 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
81385822 GTAGTTCACT
81385832 CGTGTGGGCCCACAT-GCC
1 CGTGTGGGCCCACATAGCC
*
81385850 CGTGT-GGCCTACATAGCC
1 CGTGTGGGCCCACATAGCC
81385868 C
1 C
81385869 ATTTACCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.14, C:0.38, G:0.30, T:0.19
Consensus pattern (19 bp):
CGTGTGGGCCCACATAGCC
Found at i:81390233 original size:24 final size:24
Alignment explanation
Indices: 81390206--81390262 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
81390196 CTATCTAGAG
*
81390206 CTTCTCGATATGCTTCTTTGTGAA
1 CTTCTCGATAAGCTTCTTTGTGAA
* *
81390230 CTTC-CTAATAAGGTTCTTTGTGAA
1 CTTCTC-GATAAGCTTCTTTGTGAA
81390254 CTTCTCGAT
1 CTTCTCGAT
81390263 TAAGGCTCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
23 1 0.04
24 25 0.93
25 1 0.04
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.44
Consensus pattern (24 bp):
CTTCTCGATAAGCTTCTTTGTGAA
Found at i:81390272 original size:25 final size:24
Alignment explanation
Indices: 81390220--81390272 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
81390210 TCGATATGCT
* *
81390220 TCTTTGTGAACTTCCTAATAAGGT
1 TCTTTGTGAACTTCCGAATAAGGC
*
81390244 TCTTTGTGAACTTCTCGATTAAGGC
1 TCTTTGTGAACTTC-CGAATAAGGC
81390269 TCTT
1 TCTT
81390273 ATGAGCTTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.21, C:0.19, G:0.17, T:0.43
Consensus pattern (24 bp):
TCTTTGTGAACTTCCGAATAAGGC
Found at i:81392201 original size:18 final size:17
Alignment explanation
Indices: 81392167--81392204 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
81392157 ATTAACCAAA
*
81392167 AAATAATACAAATAAAT
1 AAATAAAACAAATAAAT
81392184 AAATAAAACAACATAAAT
1 AAATAAAACAA-ATAAAT
81392202 AAA
1 AAA
81392205 ACATTTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (17 bp):
AAATAAAACAAATAAAT
Found at i:81394646 original size:29 final size:29
Alignment explanation
Indices: 81394612--81394669 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
81394602 CTATTACAAC
81394612 AATAAAAATTTTCAAACCACAATTAAATT
1 AATAAAAATTTTCAAACCACAATTAAATT
81394641 AATAAAAATTTTCAAACCACAATTAAATT
1 AATAAAAATTTTCAAACCACAATTAAATT
81394670 CAGAACCGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (29 bp):
AATAAAAATTTTCAAACCACAATTAAATT
Found at i:81397066 original size:13 final size:13
Alignment explanation
Indices: 81397048--81397074 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81397038 AATATATTGT
81397048 TTTTTTTAATTAA
1 TTTTTTTAATTAA
81397061 TTTTTTTAATTAA
1 TTTTTTTAATTAA
81397074 T
1 T
81397075 AACTCTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTTTTAATTAA
Found at i:81402024 original size:104 final size:103
Alignment explanation
Indices: 81401834--81402028 Score: 275
Period size: 103 Copynumber: 1.9 Consensus size: 103
81401824 CAAAGATAGT
* * * *
81401834 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTGAAGATTGAAGTCTTATCTCCCTGAGGTA
1 GAATCTTATCTCCATGTATCGGCAATAGAGCAGATTGAAGACTCAAGCCTTATCTCCCTGAGGTA
81401899 GCAAGGAAGCAGACTGAAGATTGAAGATTGGAAGAGGC
66 GCAAGGAAGCAGACTGAAGATTGAAGATTGGAAGAGGC
* * * *
81401937 GAATCTTATCTCCATGTATTGGCAATAGAGCAGATTTAAGCCTCAAGGCCTTATCTCTCTGAGGT
1 GAATCTTATCTCCATGTATCGGCAATAGAGCAGATTGAAGACTCAA-GCCTTATCTCCCTGAGGT
**
81402002 AGCAA-GAGAGCAGGTTGAAGATTGAAG
65 AGCAAGGA-AGCAGACTGAAGATTGAAG
81402029 TCTTATCTTC
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
103 42 0.52
104 38 0.47
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (103 bp):
GAATCTTATCTCCATGTATCGGCAATAGAGCAGATTGAAGACTCAAGCCTTATCTCCCTGAGGTA
GCAAGGAAGCAGACTGAAGATTGAAGATTGGAAGAGGC
Found at i:81402043 original size:44 final size:44
Alignment explanation
Indices: 81401986--81402072 Score: 115
Period size: 44 Copynumber: 2.0 Consensus size: 44
81401976 GCCTCAAGGC
**
81401986 CTTATCTCTCTGAGGTAGCAA-GAGAGCAGGTTGAAGATTGAAGT
1 CTTATCTCTCTGAGGTAGCAAGGA-AGCAGACTGAAGATTGAAGT
*
81402030 CTTATCT-TCCTGAGGTAGTAAGGAAGCAGACTGAAGATTGAAG
1 CTTATCTCT-CTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAG
81402073 ATTGGAAGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 1 0.03
44 35 0.92
45 2 0.05
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (44 bp):
CTTATCTCTCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGT
Found at i:81402324 original size:148 final size:148
Alignment explanation
Indices: 81401861--81402303 Score: 778
Period size: 148 Copynumber: 3.0 Consensus size: 148
81401851 ATCGGCAATG
* *
81401861 GAGCAGATTGAAGATTGAAGTCTTATCTCCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
1 GAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
* *
81401926 TTGGAAGAGGCGAATCTTATCTCCATGTATTGGCAATAGAGCAGATTTAAGCCTCAAGGCCTTAT
66 TTGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGCAGATTTAAGCCTCAAGGCCTTAT
81401991 CTCTCTGAGGTAGCAAGA
131 CTCTCTGAGGTAGCAAGA
*
81402009 GAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAAGATTGAAGA
1 GAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
*
81402074 TTGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGTAGATTTAAGCCTCAAGGCCTTAT
66 TTGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGCAGATTTAAGCCTCAAGGCCTTAT
81402139 CTCTCTGAGGTAGCAAGA
131 CTCTCTGAGGTAGCAAGA
* *
81402157 GAGTAGGTTGAAGATTGAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
1 GAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
* * *
81402222 ATGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGCAGATTTAAGCCTCAAAGCCTCAT
66 TTGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGCAGATTTAAGCCTCAAGGCCTTAT
*
81402287 CTTTCTGAGGTAGCAAG
131 CTCTCTGAGGTAGCAAG
81402304 GAAACAGACT
Statistics
Matches: 281, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
148 281 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (148 bp):
GAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
TTGGAAGAGGCGAATCTTATCTCCATGTACTGGCAATGGAGCAGATTTAAGCCTCAAGGCCTTAT
CTCTCTGAGGTAGCAAGA
Found at i:81402645 original size:11 final size:11
Alignment explanation
Indices: 81402629--81402655 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
81402619 GGGCTTATAC
81402629 AAAAAAAAACA
1 AAAAAAAAACA
81402640 AAAAAAAAACA
1 AAAAAAAAACA
81402651 AAAAA
1 AAAAA
81402656 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAAACA
Found at i:81408384 original size:47 final size:47
Alignment explanation
Indices: 81408306--81408602 Score: 452
Period size: 47 Copynumber: 6.3 Consensus size: 47
81408296 CCCTTCGGGA
* * * * *
81408306 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
81408353 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
81408400 CTTATCACATATATACACTTTCACATTCATCACA-TGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
81408446 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
81408493 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
81408542 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
81408591 CTTATCACATAT
1 CTTATCACATAT
81408603 GCCTTATCAC
Statistics
Matches: 233, Mismatches: 14, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 45 0.19
47 94 0.40
49 94 0.40
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:81408526 original size:49 final size:49
Alignment explanation
Indices: 81408306--81408731 Score: 480
Period size: 49 Copynumber: 8.6 Consensus size: 49
81408296 CCCTTCGGGA
* * * *
81408306 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
81408353 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
81408400 CTTATCAC--ATATATACACTTTCACATTCATCACA-TGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
81408446 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
81408493 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
81408542 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * **
81408591 CTTATCACATATGCCT-TATCACATATATATACACTT--TCACATTCATCACATCGGCCATTAGG
1 CTTATCACATAT--ATATA-CAC-T-T-T-CACA-TTCATCACATT-GGC-CAT-------TAGG
81408653 C
49 C
*
81408654 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
81408703 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
81408732 TATTCAAATA
Statistics
Matches: 331, Mismatches: 23, Indels: 48
0.82 0.06 0.12
Matches are distributed among these distances:
46 46 0.14
47 88 0.27
49 131 0.40
50 2 0.01
51 4 0.01
52 1 0.00
53 1 0.00
54 7 0.02
55 4 0.01
56 10 0.03
57 4 0.01
58 8 0.02
59 1 0.00
60 1 0.00
61 4 0.01
62 2 0.01
63 17 0.05
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:81408608 original size:14 final size:14
Alignment explanation
Indices: 81408589--81408616 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81408579 CGGCCATTAG
81408589 GCCTTATCACATAT
1 GCCTTATCACATAT
81408603 GCCTTATCACATAT
1 GCCTTATCACATAT
81408617 ATATACACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.36
Consensus pattern (14 bp):
GCCTTATCACATAT
Found at i:81408617 original size:63 final size:63
Alignment explanation
Indices: 81408540--81408665 Score: 252
Period size: 63 Copynumber: 2.0 Consensus size: 63
81408530 CGGCCATTAG
81408540 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
81408603 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
81408666 ATATACACTT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (63 bp):
GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:81408618 original size:112 final size:112
Alignment explanation
Indices: 81408491--81408714 Score: 430
Period size: 112 Copynumber: 2.0 Consensus size: 112
81408481 TGGCCATTCG
81408491 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
81408556 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
66 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
81408603 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
* *
81408668 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAT
66 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
81408715 ATATACACTT
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
112 110 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (112 bp):
GCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:81412200 original size:40 final size:39
Alignment explanation
Indices: 81412155--81412474 Score: 419
Period size: 40 Copynumber: 8.1 Consensus size: 39
81412145 CGAATACACG
* * * *
81412155 TCACCAGCATGATTGCTCTTCAGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
* * * ** * *
81412195 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
*
81412235 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGG-ACTTAGCCCGGATACA
81412275 TCACTAGCATGAATGCTCTTCGGGACTTAGCCC-GATACA
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
*
81412314 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGG-ACTTAGCCCGGATACA
* *
81412354 TCACTAGCATGAATGCTCTTCGAAACTTAGCCTGGATACA
1 TCACTAGCATGAATGCTCTTCG-GACTTAGCCCGGATACA
81412394 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGG-ACTTAGCCCGGATACA
81412434 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
81412473 TC
1 TC
81412475 GTCGAGACCT
Statistics
Matches: 252, Mismatches: 21, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 41 0.16
40 205 0.81
41 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACA
Found at i:81412416 original size:159 final size:159
Alignment explanation
Indices: 81412168--81412467 Score: 469
Period size: 159 Copynumber: 1.9 Consensus size: 159
81412158 CCAGCATGAT
* ****
81412168 TGCTCTTCAGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCAGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAAACTTAGCACGGATA
*
81412233 TATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGG
66 CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGG
81412298 GACTTAGCCCGATACATCACTAGCACGAA
131 GACTTAGCCCGATACATCACTAGCACGAA
* * * *
81412327 TGCTCTTC-GGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGAAACTTAGC-CTGGA
1 TGCTCTTCAGG-ACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAAACTTAGCAC-GGA
*
81412390 TACATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTC
64 TACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTC
81412455 GGGACTTAGCCCG
129 GGGACTTAGCCCG
81412468 GATCATCGTC
Statistics
Matches: 128, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
158 3 0.02
159 125 0.98
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (159 bp):
TGCTCTTCAGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAAACTTAGCACGGATA
CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGG
GACTTAGCCCGATACATCACTAGCACGAA
Found at i:81412597 original size:38 final size:38
Alignment explanation
Indices: 81412528--81412602 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
81412518 GAATTTTAAT
*
81412528 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
81412566 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
81412603 AAATCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:81414960 original size:27 final size:27
Alignment explanation
Indices: 81414930--81415012 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
81414920 CCATATATAT
81414930 ATCACATATATATACACTTTCACATTC
1 ATCACATATATATACACTTTCACATTC
** * * *
81414957 ATCAC--AT-T-GGC-CATTCGGCCTT-
1 ATCACATATATATACACTTTC-ACATTC
81414979 ATCACATATATATACACTTTCACATTC
1 ATCACATATATATACACTTTCACATTC
81415006 ATCACAT
1 ATCACAT
81415013 TGGCCATTGG
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
22 9 0.23
23 4 0.10
24 3 0.08
25 3 0.08
26 4 0.10
27 16 0.41
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.35
Consensus pattern (27 bp):
ATCACATATATATACACTTTCACATTC
Found at i:81415001 original size:49 final size:49
Alignment explanation
Indices: 81414737--81415148 Score: 575
Period size: 49 Copynumber: 8.6 Consensus size: 49
81414727 CCCTTCGGGA
* * *
81414737 CTTATCACAT-T-TATACACTTTCACATCCAT--CATTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* * *
81414782 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
81414829 CTTATCAC--ATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
81414875 CTTATCAC--ATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
81414921 CATATATATATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 C-----T-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
81414976 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATT-GGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
81415024 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
81415071 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
81415120 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
81415149 TATTCAAATA
Statistics
Matches: 339, Mismatches: 11, Indels: 30
0.89 0.03 0.08
Matches are distributed among these distances:
44 1 0.00
45 26 0.08
46 85 0.25
47 59 0.17
48 11 0.03
49 110 0.32
50 1 0.00
51 1 0.00
52 6 0.02
54 27 0.08
55 12 0.04
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:81415058 original size:95 final size:94
Alignment explanation
Indices: 81414737--81415148 Score: 564
Period size: 95 Copynumber: 4.3 Consensus size: 94
81414727 CCCTTCGGGA
* * * * * * *
81414737 CTTATCACATTTATACACTTTCACATCCAT--CATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
81414800 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTCGGC
81414829 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
81414893 TTTCACATTCATCACAT-GGCCATTCGGC
66 TTTCACATTCATCACATCGGCCATTCGGC
* *
81414921 CATATATATATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
1 C-----T-TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--
*
81414986 ATATATACACTTTCACATTCATCACATTGGCCATT-GGC
56 ATATATACACTTTCACATTCATCACATCGGCCATTCGGC
81415024 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
81415089 ACTTTCACATTCATCACATCGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTCGGC
81415120 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
81415149 TATTCAAATA
Statistics
Matches: 290, Mismatches: 13, Indels: 28
0.88 0.04 0.08
Matches are distributed among these distances:
92 39 0.13
93 39 0.13
94 5 0.02
95 81 0.28
96 11 0.04
97 7 0.02
98 26 0.09
100 29 0.10
101 15 0.05
103 31 0.11
104 7 0.02
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTCGGC
Found at i:81415138 original size:144 final size:143
Alignment explanation
Indices: 81414737--81415148 Score: 620
Period size: 144 Copynumber: 2.9 Consensus size: 143
81414727 CCCTTCGGGA
* * * * * *
81414737 CTTATCACATTTATACACTTTCACATCCATCA-TTGGCCACTCGGCCCTGTCAC--ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATGGCCATTCGGCCTTATCACATATATATACA
*
81414799 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCAC
66 CTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCAC
81414862 ATCGGCATTAGGC
131 ATCGGCATTAGGC
81414875 CTTATCACATATATACACTTTCACATTCATCACATGGCCATTCGGCCATATATATATCACATATA
1 CTTATCACATATATACACTTTCACATTCATCACATGGCCATTCGGCC-----T-TATCACATATA
*
81414940 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATT
60 TATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCACATT
*
81415005 CATCACATTGGCCATT-GGC
125 CATCACATCGG-CATTAGGC
*
81415024 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACAT-GGCCATTCGGCCTTATCACATATATATAC
81415089 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCACATT
65 ACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCACATT
81415149 TATTCAAATA
Statistics
Matches: 250, Mismatches: 11, Indels: 20
0.89 0.04 0.07
Matches are distributed among these distances:
138 30 0.12
139 12 0.05
144 75 0.30
145 6 0.02
147 45 0.18
149 67 0.27
150 15 0.06
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATGGCCATTCGGCCTTATCACATATATATACA
CTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCAC
ATCGGCATTAGGC
Found at i:81427940 original size:92 final size:93
Alignment explanation
Indices: 81427805--81427981 Score: 302
Period size: 92 Copynumber: 1.9 Consensus size: 93
81427795 CATTTCTTAG
* * *
81427805 CCTTTATTTACTTTTGTTAAGATTGAGCTCTGATTAGATATTTTGTTTTGGGTTTAATTGTTGAT
1 CCTTTATTTACTTTTATTAAGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAATTGTTGAT
81427870 TCATCTTTTTTCTATTATTTATTCTTCA
66 TCATCTTTTTTCTATTATTTATTCTTCA
* *
81427898 CCTTTATTTAC-TTTATTAAGATTGAACTCTTATTAGAGATTTTGTTTTGGGTTTAATTGTTTAT
1 CCTTTATTTACTTTTATTAAGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAATTGTTGAT
81427962 TCATCTTTTTTCTATTATTT
66 TCATCTTTTTTCTATTATTT
81427982 CCTGGTAGCT
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
92 68 0.86
93 11 0.14
ACGTcount: A:0.20, C:0.10, G:0.12, T:0.58
Consensus pattern (93 bp):
CCTTTATTTACTTTTATTAAGATTGAACTCTGATTAGAGATTTTGTTTTGGGTTTAATTGTTGAT
TCATCTTTTTTCTATTATTTATTCTTCA
Found at i:81429505 original size:20 final size:19
Alignment explanation
Indices: 81429460--81429497 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
81429450 TATTCAAACA
81429460 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
81429479 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
81429498 TTCAGAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:81430745 original size:26 final size:28
Alignment explanation
Indices: 81430715--81430767 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
81430705 AAACTTTTCT
*
81430715 AAAAG-AAAAC-TCAAGAGAAATTATTG
1 AAAAGAAAAACTTAAAGAGAAATTATTG
*
81430741 AAAAGAAAAACTTAAAGAGAATTTATT
1 AAAAGAAAAACTTAAAGAGAAATTATT
81430768 AACTCAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 5 0.22
27 5 0.22
28 13 0.57
ACGTcount: A:0.58, C:0.06, G:0.13, T:0.23
Consensus pattern (28 bp):
AAAAGAAAAACTTAAAGAGAAATTATTG
Found at i:81433719 original size:41 final size:40
Alignment explanation
Indices: 81433592--81433736 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
81433582 CTCGCACAAG
* * * * ** *
81433592 GCCTTCGGGTCTTAACCCGAATATGGTTACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
81433632 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
81433672 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
81433713 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
81433737 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.63
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:81436741 original size:43 final size:43
Alignment explanation
Indices: 81436657--81436806 Score: 112
Period size: 43 Copynumber: 3.5 Consensus size: 43
81436647 TCTGAGACAT
* * * *
81436657 CGTGTAAGACCGTGTCTGGGAC-GCAGGCCTCGAT-TGAGATTTA
1 CGTGTAAGACCATGTCTGGGACAG-AGACATCGATAT-TGATTTA
* **
81436700 CGTATAAGACCATGTCTGGGACATTGACATC-ATATTTGATTT-
1 CGTGTAAGACCATGTCTGGGACAGAGACATCGATA-TTGATTTA
* * * *
81436742 TGTGTAAGATCC-TGTCTAGGACAGAGGCATCGATATTGAATTA
1 CGTGTAAGA-CCATGTCTGGGACAGAGACATCGATATTGATTTA
* *
81436785 CATGTAAGACCACGTCTGGGAC
1 CGTGTAAGACCATGTCTGGGAC
81436807 GTCGACATTA
Statistics
Matches: 82, Mismatches: 18, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
42 32 0.39
43 49 0.60
44 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACAGAGACATCGATATTGATTTA
Found at i:81443663 original size:8 final size:8
Alignment explanation
Indices: 81443650--81443692 Score: 63
Period size: 8 Copynumber: 5.6 Consensus size: 8
81443640 TTGAATGAAA
81443650 TGAATGGT
1 TGAATGGT
81443658 TGAATGGT
1 TGAATGGT
81443666 TGAAT--T
1 TGAATGGT
*
81443672 TGTATGGT
1 TGAATGGT
81443680 TGAATGGT
1 TGAATGGT
81443688 TGAAT
1 TGAAT
81443693 TTGTATTGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 5 0.16
8 26 0.84
ACGTcount: A:0.26, C:0.00, G:0.33, T:0.42
Consensus pattern (8 bp):
TGAATGGT
Found at i:81443680 original size:22 final size:22
Alignment explanation
Indices: 81443653--81443698 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
81443643 AATGAAATGA
81443653 ATGGTTGAATGGTTGAATTTGT
1 ATGGTTGAATGGTTGAATTTGT
81443675 ATGGTTGAATGGTTGAATTTGT
1 ATGGTTGAATGGTTGAATTTGT
81443697 AT
1 AT
81443699 TGTATTAGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (22 bp):
ATGGTTGAATGGTTGAATTTGT
Found at i:81443877 original size:14 final size:14
Alignment explanation
Indices: 81443858--81443887 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
81443848 TAATCTGCAT
81443858 TGGATGGCCTTGAG
1 TGGATGGCCTTGAG
81443872 TGGATGGCCTTGAG
1 TGGATGGCCTTGAG
81443886 TG
1 TG
81443888 CCGGATGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.43, T:0.30
Consensus pattern (14 bp):
TGGATGGCCTTGAG
Found at i:81448294 original size:15 final size:16
Alignment explanation
Indices: 81448257--81448286 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
81448247 ATAAGTGTTG
81448257 AAAATATAAAATGAAA
1 AAAATATAAAATGAAA
81448273 AAAATAT-AAATGAA
1 AAAATATAAAATGAA
81448287 TTAAATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (16 bp):
AAAATATAAAATGAAA
Found at i:81455928 original size:46 final size:46
Alignment explanation
Indices: 81455779--81455942 Score: 188
Period size: 46 Copynumber: 3.5 Consensus size: 46
81455769 TTTGTGTGCT
* *
81455779 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * * * *
81455825 AGTGTAAGACGATGTCTGAGACATGGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
*
81455873 AGAGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
*
81455919 AGTGTAAGACATGTTTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
81455943 TATCAGATAG
Statistics
Matches: 97, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
46 48 0.49
47 25 0.26
48 23 0.24
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:81455970 original size:46 final size:46
Alignment explanation
Indices: 81455920--81456014 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
81455910 ATGTAAGCCA
81455920 GTGTAAGACATGTTTGGGACATGTATCAGATAGTGATGAGTAAGTT
1 GTGTAAGACATGTTTGGGACATGTATCAGATAGTGATGAGTAAGTT
*
81455966 GTGTAAGACATGTTTGGGACATGTATCGGATAGTGATGAGTAAGTT
1 GTGTAAGACATGTTTGGGACATGTATCAGATAGTGATGAGTAAGTT
81456012 GTG
1 GTG
81456015 AGTGGTGTAG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.28, C:0.06, G:0.33, T:0.33
Consensus pattern (46 bp):
GTGTAAGACATGTTTGGGACATGTATCAGATAGTGATGAGTAAGTT
Found at i:81460286 original size:117 final size:117
Alignment explanation
Indices: 81460078--81460288 Score: 314
Period size: 117 Copynumber: 1.8 Consensus size: 117
81460068 TTTGATTTGT
* * * *
81460078 TGGTTATTTGTGATTTAGCATTGCAATTTGAGTGCGACAATGTAGGGTTTGTTTTGTCAATTTTT
1 TGGTTAATTGTGATTTAGCATTGCAATTTCAGTGCCACAATGTAGGGTTTGTTTTGTCAATTTGT
*
81460143 GATGCGATACTGGTCCCGATGTTGTTGATAAAACTGTTGTAAAAATTGTATA
66 GATGCGATACTGGTCCCGATGATGTTGATAAAACTGTTGTAAAAATTGTATA
** ** * *
81460195 TGGTTAATTGTGATTTATTATTGCAATTTCAGTGCCAGGATGTAGGGTTTGTTTTTTCGATTTGT
1 TGGTTAATTGTGATTTAGCATTGCAATTTCAGTGCCACAATGTAGGGTTTGTTTTGTCAATTTGT
*
81460260 GATGCGATAGTGGTCCCGATGATGTTGAT
66 GATGCGATACTGGTCCCGATGATGTTGAT
81460289 TTCTATTACC
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
117 82 1.00
ACGTcount: A:0.22, C:0.09, G:0.26, T:0.43
Consensus pattern (117 bp):
TGGTTAATTGTGATTTAGCATTGCAATTTCAGTGCCACAATGTAGGGTTTGTTTTGTCAATTTGT
GATGCGATACTGGTCCCGATGATGTTGATAAAACTGTTGTAAAAATTGTATA
Found at i:81461177 original size:51 final size:51
Alignment explanation
Indices: 81461118--81461269 Score: 232
Period size: 51 Copynumber: 3.0 Consensus size: 51
81461108 GTTGCTGGTA
* * * *
81461118 ATGAATATGCTAGTAATTCTGCAACCTCAGATGGAGTGGATAATGTTGCTG
1 ATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGTTGCTG
* * *
81461169 ATGAATATGTTGGTGATTTTACAACATCAGATGGAGTGGATAATATTGCTG
1 ATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGTTGCTG
*
81461220 ATGAATATGCTGGTGATTTTGCAACATCAGATGGACTGGATAATGTTGCT
1 ATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGTTGCT
81461270 ACTGCACGTA
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 90 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.34
Consensus pattern (51 bp):
ATGAATATGCTGGTGATTTTGCAACATCAGATGGAGTGGATAATGTTGCTG
Found at i:81465038 original size:33 final size:33
Alignment explanation
Indices: 81465001--81465080 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 33
81464991 TCACGATTTG
* ** *
81465001 GTTTTAAGGGATTTCATGATTTTGTTCCTAATA
1 GTTTTAAGGGATTTCACGATTTCATTCCTAAAA
*
81465034 GTTTT-AGGGA-TTCAACGATTTCATTCGTAAAA
1 GTTTTAAGGGATTTC-ACGATTTCATTCCTAAAA
81465066 GTTTTAA-GGATTTCA
1 GTTTTAAGGGATTTCA
81465081 AGAAGATTTC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
31 3 0.08
32 27 0.69
33 9 0.23
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.44
Consensus pattern (33 bp):
GTTTTAAGGGATTTCACGATTTCATTCCTAAAA
Found at i:81468792 original size:47 final size:47
Alignment explanation
Indices: 81468741--81468915 Score: 235
Period size: 47 Copynumber: 3.7 Consensus size: 47
81468731 TTAGGATTCT
* * *
81468741 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
81468788 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
81468835 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
81468882 ACGTGATGGATGTGAAAGTGTATAAATGTGATAA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAA
81468916 CTCCCGAAGG
Statistics
Matches: 114, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 1 0.01
47 113 0.99
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:81469091 original size:37 final size:37
Alignment explanation
Indices: 81469035--81469113 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
81469025 CCGAGCTCTA
* * *
81469035 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
81469072 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
81469109 AAGAC
1 AAGAC
81469114 TTCGAATAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:81482691 original size:48 final size:48
Alignment explanation
Indices: 81482467--81482690 Score: 301
Period size: 48 Copynumber: 4.7 Consensus size: 48
81482457 AGTACCAATT
* * *
81482467 CCATGTCCCCGACATGGTCTTACAT--GAATTCACATATCATCGTCGATG
1 CCATGTCCCAGACATGGTCTTACATAGGCA--CACATATCATCGCCGATG
*
81482515 GCATGTCCCAGACATGGTCTTACACTA-GCACACATATCATCGCCGATG
1 CCATGTCCCAGACATGGTCTTACA-TAGGCACACATATCATCGCCGATG
* * *
81482563 CCATGTCCCAAACATGGTCTTACACAGACACACATATCATCGCCGATG
1 CCATGTCCCAGACATGGTCTTACATAGGCACACATATCATCGCCGATG
* * * *
81482611 CCATGTCCCAGACATGATCTTACACAGGCACATATATCATCGCTGATG
1 CCATGTCCCAGACATGGTCTTACATAGGCACACATATCATCGCCGATG
81482659 CCATGTCCCAGACATGGTCTTACATAGGCACA
1 CCATGTCCCAGACATGGTCTTACATAGGCACA
81482691 TTCAGCACAG
Statistics
Matches: 158, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
47 1 0.01
48 154 0.97
49 1 0.01
50 2 0.01
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACATAGGCACACATATCATCGCCGATG
Found at i:81485060 original size:13 final size:13
Alignment explanation
Indices: 81485022--81485073 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
81485012 AGTTTGGCAA
81485022 TGCTTTTG-AAAG
1 TGCTTTTGAAAAG
*
81485034 TGC-TGTGAAAAAG
1 TGCTTTTG-AAAAG
*
81485047 TGCTTTTGATAAG
1 TGCTTTTGAAAAG
81485060 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
81485073 T
1 T
81485074 TTGGTTTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
11 3 0.09
12 3 0.09
13 24 0.73
14 3 0.09
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:81486146 original size:15 final size:15
Alignment explanation
Indices: 81486121--81486189 Score: 86
Period size: 15 Copynumber: 4.6 Consensus size: 15
81486111 GAGATGACAT
*
81486121 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
* *
81486136 GAAGTCCAAGAAAAA
1 GAAATCCAAGATAAA
*
81486151 GAAATCCATGATAAA
1 GAAATCCAAGATAAA
81486166 GAAATCCAAGATACAA
1 GAAATCCAAGATA-AA
81486182 -AAATCCAA
1 GAAATCCAA
81486190 AATACTATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
15 44 0.96
16 2 0.04
ACGTcount: A:0.59, C:0.16, G:0.13, T:0.12
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:81492850 original size:95 final size:96
Alignment explanation
Indices: 81492678--81492863 Score: 356
Period size: 95 Copynumber: 1.9 Consensus size: 96
81492668 TCTGGATATG
*
81492678 GACTGGTTAACTCAACATGAAGCAGTGGTAAACTGCAAACAAAATCATATTGTATTGAAATTTTA
1 GACTGGTTAACTCAACATGAAACAGTGGTAAACTGCAAACAAAATCATATTGTATTGAAATTTTA
81492743 GAATGGTGAAATGCTCTGTATTGAATGTATA
66 GAATGGTGAAATGCTCTGTATTGAATGTATA
81492774 GACTGGTTAACTCAACATGAAACAGTGGTAAACTGCAAA-AAAATCATATTGTATTGAAATTTTA
1 GACTGGTTAACTCAACATGAAACAGTGGTAAACTGCAAACAAAATCATATTGTATTGAAATTTTA
81492838 GAATGGTGAAATGCTCTGTATTGAAT
66 GAATGGTGAAATGCTCTGTATTGAAT
81492864 CTAATAAAGT
Statistics
Matches: 89, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
95 51 0.57
96 38 0.43
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.31
Consensus pattern (96 bp):
GACTGGTTAACTCAACATGAAACAGTGGTAAACTGCAAACAAAATCATATTGTATTGAAATTTTA
GAATGGTGAAATGCTCTGTATTGAATGTATA
Found at i:81509946 original size:27 final size:26
Alignment explanation
Indices: 81509902--81509953 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
81509892 CTTGCTGCAA
*
81509902 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
81509929 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
81509954 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:81515249 original size:43 final size:44
Alignment explanation
Indices: 81515128--81515274 Score: 160
Period size: 43 Copynumber: 3.4 Consensus size: 44
81515118 GCCAAGATGA
* * *
81515128 GATTACATGTAAGACCATGTTTGGGACATTGGCAT-TGTATTGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTAATGT
*
81515171 GATTATGTGTAAGACCATGTCTGGGACATTGGCATCAT-TAAT-T
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATC-TGTAATGT
* * *
81515214 GATTACGTGTAAGACCCTGTCTGGGACAGTGGCATC-G-ATATGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTA-ATGT
* *
81515257 GATAACATGTAAGACCAT
1 GATTACGTGTAAGACCAT
81515275 ATCTAGGATA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 81 0.92
44 3 0.03
45 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (44 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTAATGT
Found at i:81518503 original size:15 final size:15
Alignment explanation
Indices: 81518468--81518507 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
81518458 CTTTTTCTAC
81518468 CAAATTATAAACAATT
1 CAAA-TATAAACAATT
81518484 CAAATATACAACAATT
1 CAAATATA-AACAATT
81518500 -AAATATAA
1 CAAATATAA
81518508 TCATACCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 1 0.04
15 11 0.48
16 11 0.48
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (15 bp):
CAAATATAAACAATT
Found at i:81521151 original size:84 final size:85
Alignment explanation
Indices: 81520942--81521287 Score: 304
Period size: 84 Copynumber: 4.1 Consensus size: 85
81520932 ACCACCACTG
* * ** * * ** *
81520942 ATTTGCAATTACTGTCACTTGTCATG-GGGCACAACATATTTACATATTAAACAAACTACCACTT
1 ATTTGCAGTTACTGCCACTTGTTGTGAGTGCACAACATATTTACAGAGCAAACAAACTGCCACTT
* *
81521006 GGTTCGTTATTGAACCACACT
66 GGTTTGTGATTGAACCACA-T
* ** * ** *
81521027 GTTTTTAGTTACTGCCACTTGTTGTGAGTGCACGACATATTTGTAG-GCAAACAAACTGTCACTT
1 ATTTGCAGTTACTGCCACTTGTTGTGAGTGCACAACATATTTACAGAGCAAACAAACTGCCACTT
*
81521091 GGTTTGTGATTGAACCATAT
66 GGTTTGTGATTGAACCACAT
* * * ** * *
81521111 ATTTGCAGTTACTGCCACTTTTTGTGGGTGCACAATATATTTACAGATTAAACAAAGTGCCACTC
1 ATTTGCAGTTACTGCCACTTGTTGTGAGTGCACAACATATTTACAGAGCAAACAAACTGCCACTT
81521176 GGTTTGTGATTGAACCACAT
66 GGTTTGTGATTGAACCACAT
* * * * ** *
81521196 A-TTGCAGTTACT-CAAACTTGTTGTGAGTACACAACATATTTGCATATTAAACAAATTGCCACT
1 ATTTGCAGTTACTGC-CACTTGTTGTGAGTGCACAACATATTTACAGAGCAAACAAACTGCCACT
** *
81521259 CAGTTCGTGATTGAACCACACT
65 TGGTTTGTGATTGAACCACA-T
*
81521281 GTTTGCA
1 ATTTGCA
81521288 AATTGAACTA
Statistics
Matches: 211, Mismatches: 45, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
83 1 0.00
84 108 0.51
85 83 0.39
86 19 0.09
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (85 bp):
ATTTGCAGTTACTGCCACTTGTTGTGAGTGCACAACATATTTACAGAGCAAACAAACTGCCACTT
GGTTTGTGATTGAACCACAT
Found at i:81534305 original size:17 final size:18
Alignment explanation
Indices: 81534272--81534310 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
81534262 TTCATGAACT
81534272 ACACTAGGGTTTCTAGGGC
1 ACACTAGGG-TTCTAGGGC
81534291 ACACTAGGG-TCTAGGGC
1 ACACTAGGGTTCTAGGGC
81534308 ACA
1 ACA
81534311 TTCTTTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 11 0.55
19 9 0.45
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.21
Consensus pattern (18 bp):
ACACTAGGGTTCTAGGGC
Found at i:81538099 original size:93 final size:93
Alignment explanation
Indices: 81537987--81538158 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
81537977 CGCCCATAAG
* *
81537987 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81538052 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
*
81538080 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
81538145 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
81538159 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:81538155 original size:46 final size:46
Alignment explanation
Indices: 81537980--81538155 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
81537970 TGTAACCCGC
* *
81537980 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
81538026 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
81538076 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
81538119 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
81538156 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 64 0.59
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:81545668 original size:93 final size:93
Alignment explanation
Indices: 81545556--81545727 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
81545546 CGCCCATAAG
* *
81545556 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81545621 ACGAGCTCGGATGCCTAGTTACTTTTCA
66 ACGAGCTCGGATGCCTAGTTACTTTTCA
*
81545649 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
81545714 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
81545728 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACTTTTCA
Found at i:81545724 original size:46 final size:46
Alignment explanation
Indices: 81545549--81545724 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
81545539 TGTAACCCGC
* *
81545549 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
81545595 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
** * *
81545641 ACTTTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 -C-CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
81545688 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
81545725 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 66 0.61
47 29 0.27
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:81545743 original size:46 final size:46
Alignment explanation
Indices: 81545557--81545743 Score: 127
Period size: 46 Copynumber: 4.0 Consensus size: 46
81545547 GCCCATAAGC
** * *
81545557 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCC-T-AGT
** * *
81545603 GAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTACTTTTC-A-C
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACCATCCTAGT
* * * * *
81545650 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGCTCAACCATCCTAGT
*
81545696 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCTAGT
81545742 GA
1 GA
81545744 CATGTCACTT
Statistics
Matches: 110, Mismatches: 18, Indels: 26
0.71 0.12 0.17
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 64 0.58
47 27 0.25
48 1 0.01
49 4 0.04
50 1 0.01
51 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCTAGT
Found at i:81549015 original size:24 final size:24
Alignment explanation
Indices: 81548983--81549033 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
81548973 AAGTCTGTCA
**
81548983 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
81549007 GGATAGGATTTAGGAGCAGATAAG
1 GGATAGGATTTAGGAGCAGATAAG
81549031 GGA
1 GGA
81549034 GGAAATCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.02, G:0.39, T:0.24
Consensus pattern (24 bp):
GGATAGGATTTAGGAGCAGATAAG
Found at i:81555288 original size:24 final size:24
Alignment explanation
Indices: 81555244--81555289 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
81555234 AGTCTGTCAA
**
81555244 GATAGGATTTAGGAGTTGATAAAG
1 GATAGGATTTAGGAGCAGATAAAG
81555268 GATAGGATTTAGGAGCAGATAA
1 GATAGGATTTAGGAGCAGATAA
81555290 GGGAGGAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.33, T:0.26
Consensus pattern (24 bp):
GATAGGATTTAGGAGCAGATAAAG
Found at i:81559201 original size:40 final size:41
Alignment explanation
Indices: 81559142--81559261 Score: 127
Period size: 40 Copynumber: 2.9 Consensus size: 41
81559132 GATTTGTGAT
*
81559142 TTACGTGTAAGACCATGTCTGGGACATCGGCATTGTATGAG-
1 TTACATGTAAGACCATGTCTGGGACAT-GGCATTGTATGAGA
* * *
81559183 TT-CATGTAAGACCTTGTCTGGGACAGTGGCATCGATATGTGA
1 TTACATGTAAGACCATGTCTGGGACA-TGGCATTG-TATGAGA
* * *
81559225 TTACATGTAAGACAACGTCTGGGACGTTGGCATTGTA
1 TTACATGTAAGACCATGTCTGGGAC-ATGGCATTGTA
81559262 CAAGCTTTTT
Statistics
Matches: 65, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
40 27 0.42
41 8 0.12
42 4 0.06
43 26 0.40
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (41 bp):
TTACATGTAAGACCATGTCTGGGACATGGCATTGTATGAGA
Done.