Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 250 of 325
Found at i:81570430 original size:39 final size:40
Alignment explanation
Indices: 81570273--81570497 Score: 251
Period size: 40 Copynumber: 5.7 Consensus size: 40
81570263 GCTCCTCGTT
* *
81570273 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* *
81570313 CAAATGCCTTTGGGACTTAACCCGGATTTTGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
81570353 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
81570393 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * * * *
81570432 CAAATGCCTTC-GAATCTTAATCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
81570473 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
81570498 CATCATTCAA
Statistics
Matches: 155, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 32 0.21
40 110 0.71
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:81570451 original size:119 final size:120
Alignment explanation
Indices: 81570275--81570497 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
81570265 TCCTCGTTCA
* * * *
81570275 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTTCGAACTTAACCCGAAT
* * *
81570340 TTTGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATGGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * *
81570395 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCC-TTCGAATCTTAATCCGA
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTTCGAA-CTTAACCCGA
* *
81570457 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATGGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
81570498 CATCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 5 0.06
119 63 0.72
120 20 0.23
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTTCGAACTTAACCCGAAT
ATGGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:81583346 original size:22 final size:22
Alignment explanation
Indices: 81583314--81583366 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
81583304 CTAAGTCAAT
*
81583314 AGGACGGCTCAACGCC-ATAGAC
1 AGGACGACTCAAC-CCTATAGAC
*
81583336 AGGACGACTCAACCCTGTAGAC
1 AGGACGACTCAACCCTATAGAC
81583358 AGGACGACT
1 AGGACGACT
81583367 AAAAGCCGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 2 0.07
22 26 0.93
ACGTcount: A:0.32, C:0.30, G:0.26, T:0.11
Consensus pattern (22 bp):
AGGACGACTCAACCCTATAGAC
Found at i:81583911 original size:17 final size:18
Alignment explanation
Indices: 81583882--81583922 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 18
81583872 ATCCATGTGG
81583882 GGCCCACGAGCCCAT-TA
1 GGCCCACGAGCCCATCTA
81583899 GGCCACACG-GCCCATCTA
1 GGCC-CACGAGCCCATCTA
81583917 GGCCCA
1 GGCCCA
81583923 ATGTGGCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.22, C:0.44, G:0.24, T:0.10
Consensus pattern (18 bp):
GGCCCACGAGCCCATCTA
Found at i:81587275 original size:22 final size:22
Alignment explanation
Indices: 81587249--81587291 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
81587239 GATAACAACA
*
81587249 AAATATTCATAGACATGTTCAC
1 AAATATTCATAGACATATTCAC
81587271 AAATATTCATAGACATATTCA
1 AAATATTCATAGACATATTCA
81587292 TAGACATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (22 bp):
AAATATTCATAGACATATTCAC
Found at i:81587288 original size:12 final size:12
Alignment explanation
Indices: 81587251--81587304 Score: 67
Period size: 12 Copynumber: 4.7 Consensus size: 12
81587241 TAACAACAAA
81587251 ATATTCATAGAC
1 ATATTCATAGAC
* *
81587263 ATGTTCACA-A-
1 ATATTCATAGAC
81587273 ATATTCATAGAC
1 ATATTCATAGAC
81587285 ATATTCATAGAC
1 ATATTCATAGAC
*
81587297 ATGTTCAT
1 ATATTCAT
81587305 CACAAGAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
10 7 0.20
11 2 0.06
12 26 0.74
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (12 bp):
ATATTCATAGAC
Found at i:81588333 original size:27 final size:27
Alignment explanation
Indices: 81588282--81588333 Score: 63
Period size: 25 Copynumber: 1.9 Consensus size: 27
81588272 AATGCACAAA
*
81588282 TTTGAAAATAATTTCTTGGAAAACACC
1 TTTGAAAATAATTTCTTAGAAAACACC
81588309 TTTG-AAA-AATTTCTTCAGAATAACA
1 TTTGAAAATAATTTCTT-AGAA-AACA
81588334 TTCTTCTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 8 0.36
26 6 0.27
27 8 0.36
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (27 bp):
TTTGAAAATAATTTCTTAGAAAACACC
Found at i:81590826 original size:6 final size:6
Alignment explanation
Indices: 81590796--81590953 Score: 90
Period size: 6 Copynumber: 25.7 Consensus size: 6
81590786 AAGAAACATT
* * *
81590796 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * * *
81590845 ATCAAA ATCAAA ATCAGA ATTAGA ATTAGGTA A-CAGA ATCAGA ATCGGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* * * *
81590894 GTCAGGTA AT-AGA ATCAGA ATCAGA ACCAGA ATCAGA ATTAGA TAACAGA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA -ATCAGA
*
81590944 ATAAGA ATCA
1 ATCAGA ATCA
81590954 ATATCAGGTA
Statistics
Matches: 116, Mismatches: 24, Indels: 24
0.71 0.15 0.15
Matches are distributed among these distances:
5 7 0.06
6 93 0.80
7 12 0.10
8 4 0.03
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:81590846 original size:19 final size:19
Alignment explanation
Indices: 81590822--81590953 Score: 83
Period size: 19 Copynumber: 6.7 Consensus size: 19
81590812 AAATGAGAAT
*
81590822 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTAA
* *
81590841 CAGAATCAAAATCA--AAA
1 CAGAATCAGAATCAGGTAA
* *
81590858 TCAGAATTAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
81590878 CAGAATCAGAATCGGTGTCAGGTAA
1 CAGAATCAGAA------TCAGGTAA
*
81590903 TAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
* *
81590920 CCAGAATCAGAATTAGATAA
1 -CAGAATCAGAATCAGGTAA
*
81590940 CAGAATAAGAATCA
1 CAGAATCAGAATCA
81590954 ATATCAGGTA
Statistics
Matches: 86, Mismatches: 15, Indels: 24
0.69 0.12 0.19
Matches are distributed among these distances:
17 3 0.03
18 24 0.28
19 38 0.44
20 4 0.05
25 17 0.20
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:81590851 original size:37 final size:37
Alignment explanation
Indices: 81590805--81590890 Score: 118
Period size: 37 Copynumber: 2.3 Consensus size: 37
81590795 TATCAGAACT
* * *
81590805 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
* *
81590842 AGAATCAAAATCAAAATCAGAATTAGAATTAGGTAAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
*
81590879 AGAATCAGAATC
1 AGAATCAAAATC
81590891 GGTGTCAGGT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (37 bp):
AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:81590908 original size:62 final size:62
Alignment explanation
Indices: 81590817--81590970 Score: 200
Period size: 62 Copynumber: 2.5 Consensus size: 62
81590807 AATCAAAATG
* * * * *
81590817 AGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAAAATCAGAATTAGAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAAAACCAGAATCAGAATTAGATAAC
* * * * *
81590879 AGAATCAGAATCGGTGTCAGGTAATAGAATCAGAATCAGAACCAGAATCAGAATTAGATAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAAAACCAGAATCAGAATTAGATAAC
* *
81590941 AGAATAAGAATCAATATCAGGTAACAGAAT
1 AGAATCAGAATCAGTATCAGGTAACAGAAT
81590971 TATAATCAGA
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 77 1.00
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (62 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAAAACCAGAATCAGAATTAGATAAC
Found at i:81591849 original size:27 final size:27
Alignment explanation
Indices: 81591492--81591841 Score: 475
Period size: 27 Copynumber: 13.0 Consensus size: 27
81591482 GGGGTAAAAT
* * * *
81591492 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
81591519 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
81591546 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
81591573 GGTATTTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
81591600 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
81591627 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
81591654 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
81591681 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
81591708 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
81591735 GGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
81591762 GGTAATTCTACCCTACATGGGTTTTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
81591789 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
81591816 GGTAATTCTACCTTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
81591842 TAGTAATTTT
Statistics
Matches: 281, Mismatches: 42, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 281 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:81591849 original size:81 final size:81
Alignment explanation
Indices: 81591496--81591841 Score: 568
Period size: 81 Copynumber: 4.3 Consensus size: 81
81591486 TAAAATGGTA
* * * *
81591496 ATTT-TACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
81591560 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
*
81591576 ATTTCTATCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
*
81591641 ACAGGGGTATTTTGGT
66 ACAGGGGTATTTCGGT
*
81591657 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCTT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
81591722 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
* * *
81591738 ATTTCTACCCTATAAGGGTATTTCGGTAATTCTACCCTACATGGGTTTTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
81591803 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
* * *
81591819 AATTCTACCTTACAGGGGTATTT
1 ATTTCTACCCTACAAGGGTATTT
81591842 TAGTAATTTT
Statistics
Matches: 248, Mismatches: 17, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
80 4 0.02
81 244 0.98
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
ACAGGGGTATTTCGGT
Found at i:81597824 original size:67 final size:64
Alignment explanation
Indices: 81597686--81597869 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
81597676 ATATAGTTCG
* * * * * *
81597686 GCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACAT-AGAACCACCCATGCGACCTAGCTACATATATCCCGT
81597748 A
64 A
* * *
81597749 GCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTG---TACACATAGAACCACCCATGCGACCTAGCTACATATATCCCG
81597814 TA
63 TA
* *
81597816 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACAT
81597870 CATAATGTCT
Statistics
Matches: 102, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 29 0.28
66 23 0.23
67 31 0.30
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:81608889 original size:16 final size:17
Alignment explanation
Indices: 81608870--81608905 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
81608860 CCTTAAACTT
*
81608870 TAAACCCTT-GAAACCC
1 TAAACCCTTAAAAACCC
81608886 TAAACCCTTAAAAACCC
1 TAAACCCTTAAAAACCC
81608903 TAA
1 TAA
81608906 CCTAAACCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.44, C:0.33, G:0.03, T:0.19
Consensus pattern (17 bp):
TAAACCCTTAAAAACCC
Found at i:81608912 original size:22 final size:23
Alignment explanation
Indices: 81608884--81608928 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
81608874 CCCTTGAAAC
81608884 CCTAAACCCTT-AA-AAACCCTAA
1 CCTAAA-CCTTAAACAAACCCTAA
81608906 CCTAAACCTTAAACAAACCCTAA
1 CCTAAACCTTAAACAAACCCTAA
81608929 AAACAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 9 0.43
ACGTcount: A:0.47, C:0.36, G:0.00, T:0.18
Consensus pattern (23 bp):
CCTAAACCTTAAACAAACCCTAA
Found at i:81609911 original size:20 final size:21
Alignment explanation
Indices: 81609864--81609911 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
81609854 AAAAGATAAA
81609864 TTAAAATTGCATAATTCTTTG
1 TTAAAATTGCATAATTCTTTG
81609885 TTAAAATTGCATAATTCTTTG
1 TTAAAATTGCATAATTCTTTG
81609906 -TAAAAT
1 TTAAAAT
81609912 ATATATTAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 6 0.22
21 21 0.78
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (21 bp):
TTAAAATTGCATAATTCTTTG
Found at i:81610230 original size:40 final size:39
Alignment explanation
Indices: 81610186--81610263 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 39
81610176 TATATTTTGA
* * *
81610186 ATATTTATTTAATAT-TTAAAAAGTATGCATTACATTTTTT
1 ATATTTAATT-ATATCTGAAAAAATATGCATTAC-TTTTTT
*
81610226 ATATTTAATTATATCTGAAAAAATATGTATTACTTTTT
1 ATATTTAATTATATCTGAAAAAATATGCATTACTTTTT
81610264 CTCAGTGTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
39 9 0.27
40 24 0.73
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (39 bp):
ATATTTAATTATATCTGAAAAAATATGCATTACTTTTTT
Found at i:81611389 original size:18 final size:18
Alignment explanation
Indices: 81611366--81611404 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
81611356 AAAATGTAAC
81611366 ATTTTTAAATA-AATATTT
1 ATTTTTAAATACAAT-TTT
81611384 ATTTTTAAATACAATTTT
1 ATTTTTAAATACAATTTT
81611402 ATT
1 ATT
81611405 CTTTGGTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTTTTAAATACAATTTT
Found at i:81620626 original size:39 final size:40
Alignment explanation
Indices: 81620505--81620689 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
81620495 GCTCCTCGTT
*
81620505 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
81620545 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
81620585 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
81620624 CAAATGCCTTC-GAATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
81620665 CAAA-GCCTTCGGGACTTGGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81620690 CATCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
39 32 0.26
40 77 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:81620649 original size:79 final size:81
Alignment explanation
Indices: 81620505--81620689 Score: 200
Period size: 79 Copynumber: 2.3 Consensus size: 81
81620495 GCTCCTCGTT
* *
81620505 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCGG
* *
81620570 ATTTAGTAAC-TCGCA
66 ATATAGTAACTTAGCA
* * * **
81620585 CAAATGCCTTCGGG-CTTAGCCTGGA-ATTAGTATCTCGCACAAATGCCTTC-GAATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGAA-CTTAACCC
* *
81620647 GGATATGGTCACTTAGCA
64 GGATATAGTAACTTAGCA
* *
81620665 CAAA-GCCTTCGGGACTTGGCCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGA
81620690 CATCATTCAA
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.61
80 31 0.35
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:81623053 original size:45 final size:44
Alignment explanation
Indices: 81622979--81623096 Score: 121
Period size: 45 Copynumber: 2.7 Consensus size: 44
81622969 TACAAAATTG
* * *
81622979 ATGGTTTATCCACAACCTACATGGCAGCTTGTCTGTGAATATTA
1 ATGGTTTATCCACAAACTACATGGAAGCTTATCTGTGAATATTA
* * *
81623023 ATGGTTTTGTCCACAAACTATATGGAAGCTTATCTGTGAAT-TTG
1 ATGG-TTTATCCACAAACTACATGGAAGCTTATCTGTGAATATTA
* * * * *
81623067 GTGGTTTATTCACAACCTAAATGGTAGCTT
1 ATGGTTTATCCACAAACTACATGGAAGCTT
81623097 GTTTGCAAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
43 21 0.34
44 9 0.15
45 31 0.51
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.36
Consensus pattern (44 bp):
ATGGTTTATCCACAAACTACATGGAAGCTTATCTGTGAATATTA
Found at i:81623977 original size:11 final size:11
Alignment explanation
Indices: 81623961--81623987 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
81623951 ATAAAATGGG
81623961 AAAATAAGCCA
1 AAAATAAGCCA
81623972 AAAATAAGCCA
1 AAAATAAGCCA
81623983 AAAAT
1 AAAAT
81623988 TAGCTCATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.67, C:0.15, G:0.07, T:0.11
Consensus pattern (11 bp):
AAAATAAGCCA
Found at i:81626721 original size:39 final size:39
Alignment explanation
Indices: 81626639--81626861 Score: 272
Period size: 40 Copynumber: 5.7 Consensus size: 39
81626629 CTCCTCGTTT
* *
81626639 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
* *
81626679 CAAATGCCTTCGGAACTTAACCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* *
81626718 CAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
* *
81626758 CCAATGCCTTCGGG-CTTAGCCCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* * * *
81626796 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
81626837 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81626862 CATCATTCAA
Statistics
Matches: 160, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
37 2 0.01
38 22 0.14
39 57 0.36
40 68 0.43
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:81626731 original size:79 final size:78
Alignment explanation
Indices: 81626639--81626861 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
81626629 CTCCTCGTTT
* *
81626639 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGAACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGG-ACTTAGCCCGG
81626704 ATTAGTAACTCGCA
65 ATTAGTAACTCGCA
* * * *
81626718 CAAATACCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGG
*
81626782 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
81626796 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTC-GGACTTAGCCC
81626859 GGA
63 GGA
81626862 CATCATTCAA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
77 4 0.03
78 51 0.41
79 66 0.54
80 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGA
TTAGTAACTCGCA
Found at i:81630122 original size:11 final size:12
Alignment explanation
Indices: 81630096--81630124 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
81630086 TCTGCATGTA
81630096 TATTTTAAAGAG
1 TATTTTAAAGAG
81630108 TATTTTAAA-AG
1 TATTTTAAAGAG
81630119 TATTTT
1 TATTTT
81630125 GCTATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (12 bp):
TATTTTAAAGAG
Found at i:81630216 original size:15 final size:15
Alignment explanation
Indices: 81630196--81630228 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
81630186 TCTCTATACT
*
81630196 TGAAACTTTAGATTA
1 TGAAACCTTAGATTA
81630211 TGAAACCTTAGATTA
1 TGAAACCTTAGATTA
81630226 TGA
1 TGA
81630229 GATGATATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.36
Consensus pattern (15 bp):
TGAAACCTTAGATTA
Found at i:81630656 original size:34 final size:34
Alignment explanation
Indices: 81630616--81630682 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
81630606 GAGAGAAAGG
81630616 AAAAAATAAAGTACAAAATAAGAGGGAGTCTAGA
1 AAAAAATAAAGTACAAAATAAGAGGGAGTCTAGA
81630650 AAAAAATAAAGTACAAAATAAGAGGGAGTCTAG
1 AAAAAATAAAGTACAAAATAAGAGGGAGTCTAG
81630683 TTATACTAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.21, T:0.15
Consensus pattern (34 bp):
AAAAAATAAAGTACAAAATAAGAGGGAGTCTAGA
Found at i:81643734 original size:15 final size:15
Alignment explanation
Indices: 81643710--81643739 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81643700 ATTAATTTTT
*
81643710 TAAATGTTCAAAATA
1 TAAATATTCAAAATA
81643725 TAAATATTCAAAATA
1 TAAATATTCAAAATA
81643740 ATAATTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (15 bp):
TAAATATTCAAAATA
Found at i:81649163 original size:40 final size:39
Alignment explanation
Indices: 81649109--81649200 Score: 121
Period size: 40 Copynumber: 2.3 Consensus size: 39
81649099 AACCCAAATC
* *
81649109 CAATCACCACCACAAAGCATGCGGGACTTTAAGCCCGGATA
1 CAAT-ACCAGCACAAACCATGCGGGACTTT-AGCCCGGATA
*
81649150 CAATACCAGCACAAACCCTGCGGGACTTTAGCCCGGATA
1 CAATACCAGCACAAACCATGCGGGACTTTAGCCCGGATA
* *
81649189 TAACACCAGCAC
1 CAATACCAGCAC
81649201 GAATGCCTTC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 20 0.43
40 22 0.48
41 4 0.09
ACGTcount: A:0.34, C:0.34, G:0.18, T:0.14
Consensus pattern (39 bp):
CAATACCAGCACAAACCATGCGGGACTTTAGCCCGGATA
Found at i:81649197 original size:39 final size:38
Alignment explanation
Indices: 81649113--81649304 Score: 150
Period size: 39 Copynumber: 5.1 Consensus size: 38
81649103 CAAATCCAAT
* * *
81649113 CACCACCACAAAGCATGCGGGACTTTAAGCCCGGATACAA
1 CACCAGCACAAAGCCTGCGGGAC-TT-AGCCCGGATATAA
* *
81649153 TACCAGCACAAACCCTGCGGGACTTTAGCCCGGATATAA
1 CACCAGCACAAAGCCTGCGGGAC-TTAGCCCGGATATAA
* * *
81649192 CACCAGCACGAATGCCTTC-GG-----G---GAATATAA
1 CACCAGCAC-AAAGCCTGCGGGACTTAGCCCGGATATAA
* *
81649222 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCAC-AAAGCCTGCGGGACTTAGCCCGGATATAA
* * *
81649261 CACCAACACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCAC-AAAGCCTGCGGGACTTAGCCCGGATATAA
81649300 CACCA
1 CACCA
81649305 TTATAAAGTT
Statistics
Matches: 130, Mismatches: 12, Indels: 21
0.80 0.07 0.13
Matches are distributed among these distances:
30 26 0.20
31 2 0.02
33 1 0.01
36 1 0.01
39 72 0.55
40 28 0.22
ACGTcount: A:0.32, C:0.31, G:0.21, T:0.16
Consensus pattern (38 bp):
CACCAGCACAAAGCCTGCGGGACTTAGCCCGGATATAA
Found at i:81649222 original size:30 final size:30
Alignment explanation
Indices: 81649186--81649243 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
81649176 TTTAGCCCGG
81649186 ATATAACACCAGCACGAATGCCTTCGGGGA
1 ATATAACACCAGCACGAATGCCTTCGGGGA
81649216 ATATAACACCAGCACGAATGCCTTCGGG
1 ATATAACACCAGCACGAATGCCTTCGGG
81649244 ACTTAGCCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.28, G:0.22, T:0.17
Consensus pattern (30 bp):
ATATAACACCAGCACGAATGCCTTCGGGGA
Found at i:81649410 original size:28 final size:28
Alignment explanation
Indices: 81649377--81649453 Score: 109
Period size: 28 Copynumber: 2.8 Consensus size: 28
81649367 ATTTAATCAT
* *
81649377 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
81649405 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
*
81649433 TCAATATTTCGTACACTAAGT
1 TCAATATTTCGCACACTAAGT
81649454 ACTATATTTG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.36
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:81655622 original size:40 final size:39
Alignment explanation
Indices: 81655572--81655655 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 39
81655562 CAAATCCAAT
*
81655572 CACCACCACAAAGCATGCGGGACTTTAAGCCCGGATATAA
1 CACCACCACAAACCATGCGGGACTTT-AGCCCGGATATAA
* * * * *
81655612 TACCAGCACAAACCCTGTGGGACTTTAGCCTGGATATAA
1 CACCACCACAAACCATGCGGGACTTTAGCCCGGATATAA
81655651 CACCA
1 CACCA
81655656 ACACGAATGC
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
39 16 0.43
40 21 0.57
ACGTcount: A:0.33, C:0.30, G:0.19, T:0.18
Consensus pattern (39 bp):
CACCACCACAAACCATGCGGGACTTTAGCCCGGATATAA
Found at i:81655681 original size:30 final size:30
Alignment explanation
Indices: 81655645--81655702 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
81655635 TTTAGCCTGG
81655645 ATATAACACCAACACGAATGCCTTCGGGGA
1 ATATAACACCAACACGAATGCCTTCGGGGA
*
81655675 ATATAACACCAGCACGAATGCCTTCGGG
1 ATATAACACCAACACGAATGCCTTCGGG
81655703 ACTTAGCCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.28, G:0.21, T:0.17
Consensus pattern (30 bp):
ATATAACACCAACACGAATGCCTTCGGGGA
Found at i:81655733 original size:39 final size:39
Alignment explanation
Indices: 81655675--81655802 Score: 220
Period size: 39 Copynumber: 3.3 Consensus size: 39
81655665 CCTTCGGGGA
*
81655675 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCTGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
* *
81655714 ATATAACACCAGCATGAATGCCTTCAGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
*
81655753 ATATAACACCAACACGAATGCCTTCGGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
81655792 ATATAACACCA
1 ATATAACACCA
81655803 TTATAAAGTC
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 83 1.00
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.20
Consensus pattern (39 bp):
ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
Found at i:81655907 original size:28 final size:28
Alignment explanation
Indices: 81655875--81655947 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
81655865 ATTTAATCAT
*
81655875 TCAATATTTTGCACACTAAGTGACATTC
1 TCAATATTTCGCACACTAAGTGACATTC
* * *
81655903 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGACATTC
*
81655931 TCAATATTTCGTACACT
1 TCAATATTTCGCACACT
81655948 GAGTACCATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.36
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGACATTC
Found at i:81655956 original size:28 final size:28
Alignment explanation
Indices: 81655875--81655956 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 28
81655865 ATTTAATCAT
*
81655875 TCAATATTTTGCACACTAAGTGA-CATTC
1 TCAATATTTCGCACACTAAGT-ACCATTC
* * *
81655903 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTACCATTC
* *
81655931 TCAATATTTCGTACACTGAGTACCAT
1 TCAATATTTCGCACACTAAGTACCAT
81655957 ATTTGATTGC
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.34
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTACCATTC
Found at i:81669168 original size:17 final size:18
Alignment explanation
Indices: 81669141--81669181 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
81669131 AGGCCAATTT
81669141 GGGTCATGTGGG-CCACAC
1 GGGT-ATGTGGGCCCACAC
81669159 GGGTATGTGGGCCCACAC
1 GGGTATGTGGGCCCACAC
81669177 GGGTA
1 GGGTA
81669182 GGCCACATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.17, C:0.24, G:0.41, T:0.17
Consensus pattern (18 bp):
GGGTATGTGGGCCCACAC
Found at i:81671937 original size:40 final size:40
Alignment explanation
Indices: 81671893--81671975 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
81671883 ACCTATGAAG
81671893 AAAAACAATTAAAATAGAATCGTGTTAATAACGTGTTATA
1 AAAAACAATTAAAATAGAATCGTGTTAATAACGTGTTATA
81671933 AAAAACAATTAAAATAGAATCGTGTTAATAACGTGTTATA
1 AAAAACAATTAAAATAGAATCGTGTTAATAACGTGTTATA
81671973 AAA
1 AAA
81671976 TAAAAAAATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.52, C:0.07, G:0.12, T:0.29
Consensus pattern (40 bp):
AAAAACAATTAAAATAGAATCGTGTTAATAACGTGTTATA
Found at i:81674047 original size:34 final size:34
Alignment explanation
Indices: 81674009--81674073 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
81673999 TTTACAATAT
**
81674009 ATCAATACGATCGCAATTAATATGCTTATAACGG
1 ATCAATACGATAACAATTAATATGCTTATAACGG
* *
81674043 ATCAATACGGTAACAATTAATATGTTTATAA
1 ATCAATACGATAACAATTAATATGCTTATAA
81674074 TAAATCAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (34 bp):
ATCAATACGATAACAATTAATATGCTTATAACGG
Found at i:81674081 original size:34 final size:34
Alignment explanation
Indices: 81673999--81674084 Score: 91
Period size: 34 Copynumber: 2.5 Consensus size: 34
81673989 ATATGAAATC
* * **
81673999 TTTACAATATATCAATACGATCGCAATTAATATG
1 TTTATAATAAATCAATACGATAACAATTAATATG
* *** *
81674033 CTTATAACGGATCAATACGGTAACAATTAATATG
1 TTTATAATAAATCAATACGATAACAATTAATATG
81674067 TTTATAATAAATCAATAC
1 TTTATAATAAATCAATAC
81674085 ATTAGCAAAA
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (34 bp):
TTTATAATAAATCAATACGATAACAATTAATATG
Found at i:81679113 original size:24 final size:24
Alignment explanation
Indices: 81679062--81679115 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
81679052 TAATGACTTT
*
81679062 GAAATGGCAAATAATATTGAAATT
1 GAAATGGCAAATAATATTGAAATG
**
81679086 GAAATGGC-AATGCTATTGAAATAG
1 GAAATGGCAAATAATATTGAAAT-G
81679110 GAAATG
1 GAAATG
81679116 TCATGGGATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 12 0.46
24 14 0.54
ACGTcount: A:0.46, C:0.06, G:0.22, T:0.26
Consensus pattern (24 bp):
GAAATGGCAAATAATATTGAAATG
Found at i:81680324 original size:17 final size:17
Alignment explanation
Indices: 81680302--81680334 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
81680292 ACTTTTTCAT
81680302 AAATATCGATACCCTTA
1 AAATATCGATACCCTTA
81680319 AAATATCGATACCCTT
1 AAATATCGATACCCTT
81680335 GTTTTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.30
Consensus pattern (17 bp):
AAATATCGATACCCTTA
Found at i:81681672 original size:10 final size:10
Alignment explanation
Indices: 81681614--81681663 Score: 64
Period size: 10 Copynumber: 5.0 Consensus size: 10
81681604 TTAAATTCTA
81681614 AAAGATAAAT
1 AAAGATAAAT
*
81681624 ACAGATAAAT
1 AAAGATAAAT
* **
81681634 AAAAATATTT
1 AAAGATAAAT
81681644 AAAGATAAAT
1 AAAGATAAAT
81681654 AAAGATAAAT
1 AAAGATAAAT
81681664 GGAGATAAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.66, C:0.02, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:81682322 original size:30 final size:31
Alignment explanation
Indices: 81682288--81682356 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
81682278 TTGCACAAGA
* * *
81682288 GTAAATTTTAAAAATTTG-AGGAGCTAA-AGT
1 GTAAATATGAAAAAGTTGAAGGA-CTAATAGT
81682318 GTAAATATGAAAAAGTTGAAGGACTAATAGT
1 GTAAATATGAAAAAGTTGAAGGACTAATAGT
*
81682349 GAAAATAT
1 GTAAATAT
81682357 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 19 0.58
31 14 0.42
ACGTcount: A:0.48, C:0.03, G:0.20, T:0.29
Consensus pattern (31 bp):
GTAAATATGAAAAAGTTGAAGGACTAATAGT
Found at i:81682355 original size:31 final size:30
Alignment explanation
Indices: 81682297--81682356 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
81682287 AGTAAATTTT
* *
81682297 AAAAATTTGAGGAGCTAAAGTGTAAATATG
1 AAAAAGTTGAGGAGCTAAAGTGAAAATATG
81682327 AAAAAGTTGAAGGA-CTAATAGTGAAAATAT
1 AAAAAGTTG-AGGAGCTAA-AGTGAAAATAT
81682357 TTTAAGGGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 12 0.46
31 14 0.54
ACGTcount: A:0.50, C:0.03, G:0.22, T:0.25
Consensus pattern (30 bp):
AAAAAGTTGAGGAGCTAAAGTGAAAATATG
Found at i:81693067 original size:10 final size:10
Alignment explanation
Indices: 81693029--81693058 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
81693019 TTAAATTCTA
81693029 AAAGATAAAT
1 AAAGATAAAT
*
81693039 ACAGATAAAT
1 AAAGATAAAT
81693049 AAAGATAAAT
1 AAAGATAAAT
81693059 GGAGATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.67, C:0.03, G:0.10, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:81694031 original size:9 final size:9
Alignment explanation
Indices: 81694014--81694050 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
81694004 TGAGTTTTTG
81694014 AATTCGAAT
1 AATTCGAAT
*
81694023 AACTCGAAT
1 AATTCGAAT
81694032 AATTCGAAT
1 AATTCGAAT
81694041 AATTCGAAT
1 AATTCGAAT
81694050 A
1 A
81694051 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:81696595 original size:33 final size:33
Alignment explanation
Indices: 81696558--81696627 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
81696548 ACAAACATAC
*
81696558 AAAGTAATAATTAAATAATGCATGATATACAAA
1 AAAGTAATAATTAAATAATGCATGACATACAAA
81696591 AAAGTAATAATTAAATAATGCATGACATACAAA
1 AAAGTAATAATTAAATAATGCATGACATACAAA
81696624 AAAG
1 AAAG
81696628 AGTAATACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.59, C:0.07, G:0.10, T:0.24
Consensus pattern (33 bp):
AAAGTAATAATTAAATAATGCATGACATACAAA
Found at i:81699619 original size:26 final size:26
Alignment explanation
Indices: 81699588--81699695 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
81699578 TGAAATGCCC
81699588 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
81699614 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* * *
81699640 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
81699666 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
81699692 ATCA
1 ATCA
81699696 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
25 2 0.03
26 72 0.97
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:81700109 original size:8 final size:8
Alignment explanation
Indices: 81700096--81700120 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
81700086 AATATAATTT
81700096 AATTTTAA
1 AATTTTAA
81700104 AATTTTAA
1 AATTTTAA
81700112 AATTTTAA
1 AATTTTAA
81700120 A
1 A
81700121 TAATATAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
AATTTTAA
Found at i:81700393 original size:22 final size:21
Alignment explanation
Indices: 81700363--81700418 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
81700353 TAATAATAAT
*
81700363 ATAAAAATAATGATG-GAAAATA
1 ATAATAATAAT-ATGTGAAAA-A
*
81700385 ATAATAATAATTTGTGAAAAA
1 ATAATAATAATATGTGAAAAA
81700406 ATAATATATAATA
1 ATAATA-ATAATA
81700419 AATAATAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 9 0.31
22 20 0.69
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (21 bp):
ATAATAATAATATGTGAAAAA
Found at i:81700433 original size:19 final size:19
Alignment explanation
Indices: 81700310--81700444 Score: 70
Period size: 19 Copynumber: 7.0 Consensus size: 19
81700300 ATGTAAGACC
*
81700310 AATATATATAAATAATTAAT
1 AATATATAT-AATAAATAAT
81700330 AA-ATATATAATGCAAATAA-
1 AATATATATAAT--AAATAAT
*
81700349 AATATA-ATAATAATATAAA
1 AATATATATAATAA-ATAAT
*
81700368 AATA-ATGATGGA-AAATAAT
1 AATATAT-AT-AATAAATAAT
** *
81700387 AATA-ATAATTTGTGAA-AA-
1 AATATAT-A-TAATAAATAAT
81700405 AATAATATATAATAAATAAT
1 AAT-ATATATAATAAATAAT
81700425 AATATATATAATAAAATAAT
1 AATATATATAAT-AAATAAT
81700445 CTTATAATGT
Statistics
Matches: 90, Mismatches: 10, Indels: 30
0.69 0.08 0.23
Matches are distributed among these distances:
17 2 0.02
18 15 0.17
19 43 0.48
20 29 0.32
21 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (19 bp):
AATATATATAATAAATAAT
Found at i:81702599 original size:205 final size:206
Alignment explanation
Indices: 81702072--81702571 Score: 806
Period size: 205 Copynumber: 2.4 Consensus size: 206
81702062 TTCTTCGATT
*
81702072 TGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGC
1 TGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGC
* *
81702137 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCGCAAGGATGCCAAATCATCGTGGATCTTG
66 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCGTGGATCTTG
* * *
81702202 CTTCAGTCTAATCGTCTGAAGGTCAGATCTACTGTGTATCTGCTCTCTATTGAAGTGGAGATGCC
131 CTTCAGTCAAAACATCTGAAGGTCAGATCTACTGTGTATCTGCTCTCTATTGAAGTGGAGATGCC
* *
81702267 AGACTTCGATT
196 AGACTTCAATC
* * * *
81702278 TGCTCTCTGCCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCATAAACACGTGAAAGC
1 TGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGC
* * *
81702343 CAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATC-TG
66 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCGTGGATCTTG
* *
81702407 CTTCAG-CAAAAACATCTGAAGGTGAGATCTGCTGTGTATCTGCTCTCTATTGAAGTGGAGATGC
131 CTTCAGTC-AAAACATCTGAAGGTCAGATCTACTGTGTATCTGCTCTCTATTGAAGTGGAGATGC
81702471 CAGACTTCAATC
195 CAGACTTCAATC
*
81702483 TGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTTATCGTAAACACGTGAAAGC
1 TGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGC
*
81702548 CAAATTAGCTATGTCTTCGATTTG
66 CAAATCAGCTATGTCTTCGATTTG
81702572 CTCTTTGCCA
Statistics
Matches: 269, Mismatches: 24, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
204 1 0.00
205 151 0.56
206 117 0.43
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (206 bp):
TGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGC
CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCGTGGATCTTG
CTTCAGTCAAAACATCTGAAGGTCAGATCTACTGTGTATCTGCTCTCTATTGAAGTGGAGATGCC
AGACTTCAATC
Found at i:81702741 original size:45 final size:45
Alignment explanation
Indices: 81702691--81702790 Score: 114
Period size: 44 Copynumber: 2.2 Consensus size: 45
81702681 CCATGTTGAA
* * * *
81702691 ATCTTCGATCTGCTTCGCTGTAATCACAGGAATGTCAGAT-TTGTT
1 ATCTTCGATCTG-TTCCCTATAATCACAGGAATGCCAAATCTTGTT
* *
81702736 ATCTTCAATCTGTTCCCTATAATCACAGGGATGCCAAATCTTGTT
1 ATCTTCGATCTGTTCCCTATAATCACAGGAATGCCAAATCTTGTT
*
81702781 -TCTTTGATCT
1 ATCTTCGATCT
81702791 ACATTGTCCC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
44 30 0.65
45 16 0.35
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (45 bp):
ATCTTCGATCTGTTCCCTATAATCACAGGAATGCCAAATCTTGTT
Found at i:81703659 original size:5 final size:5
Alignment explanation
Indices: 81703649--81703673 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
81703639 ACCTCTCCAA
81703649 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
81703674 TAAAATCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:81714970 original size:23 final size:24
Alignment explanation
Indices: 81714944--81715005 Score: 69
Period size: 22 Copynumber: 2.8 Consensus size: 24
81714934 AATATAATAG
81714944 ATATAATATAA-AATAATGAAAAT
1 ATATAATATAAGAATAATGAAAAT
* *
81714967 ATAT-ATGTAAGAATAATGCAAAT
1 ATATAATATAAGAATAATGAAAAT
*
81714990 A-A-AATATAATAATAAT
1 ATATAATATAAGAATAAT
81715006 ATAAAAATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
22 17 0.52
23 16 0.48
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (24 bp):
ATATAATATAAGAATAATGAAAAT
Found at i:81715003 original size:3 final size:3
Alignment explanation
Indices: 81714987--81715098 Score: 51
Period size: 3 Copynumber: 38.0 Consensus size: 3
81714977 GAATAATGCA
* * * *
81714987 AAT AA- AAT -AT AAT AAT AAT -AT AAA AAT AAT GAT -GT AA- ACT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
** *
81715030 AAT AAT AATT TGT GAA- AAA AAT AAT ATAT AAT ATAT AAT ACAT AAT
1 AAT AAT AA-T AAT -AAT AAT AAT AAT A-AT AAT A-AT AAT A-AT AAT
81715076 AAT AAT -AT ATAT AAT AA- AAT AAT
1 AAT AAT AAT A-AT AAT AAT AAT AAT
81715099 CTTATAATGT
Statistics
Matches: 83, Mismatches: 12, Indels: 28
0.67 0.10 0.23
Matches are distributed among these distances:
2 14 0.17
3 56 0.67
4 13 0.16
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:81715036 original size:22 final size:21
Alignment explanation
Indices: 81715006--81715087 Score: 65
Period size: 22 Copynumber: 3.6 Consensus size: 21
81714996 TAATAATAAT
*
81715006 ATAAAAATAATGATGTAAACTA
1 ATAATAATAAT-ATGTAAACTA
* **
81715028 ATAATAATAATTTGTGAAAAAA
1 ATAATAATAATATGT-AAACTA
*
81715050 ATAATATATAATATATAATACATA
1 ATAATA-ATAATATGTAA-AC-TA
81715074 ATAATAATATATAT
1 ATAATAATA-ATAT
81715088 AATAAAATAA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
21 3 0.06
22 22 0.47
23 11 0.23
24 11 0.23
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (21 bp):
ATAATAATAATATGTAAACTA
Found at i:81715062 original size:7 final size:7
Alignment explanation
Indices: 81715050--81715116 Score: 63
Period size: 7 Copynumber: 10.1 Consensus size: 7
81715040 TGTGAAAAAA
81715050 ATAATAT
1 ATAATAT
81715057 ATAATAT
1 ATAATAT
*
81715064 ATAATAC
1 ATAATAT
81715071 ATAATA-
1 ATAATAT
81715077 ATAATAT
1 ATAATAT
81715084 AT-ATA-
1 ATAATAT
81715089 ATAA-A-
1 ATAATAT
*
81715094 ATAATCTT
1 ATAAT-AT
*
81715102 ATAATGT
1 ATAATAT
81715109 ATAATAT
1 ATAATAT
81715116 A
1 A
81715117 AAAGTAAGGT
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
5 7 0.14
6 10 0.20
7 29 0.57
8 5 0.10
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (7 bp):
ATAATAT
Found at i:81715096 original size:17 final size:20
Alignment explanation
Indices: 81715050--81715098 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
81715040 TGTGAAAAAA
81715050 ATAATATATAATATATAATAC
1 ATAATA-ATAATATATAATAC
81715071 ATAATAATAATATAT-ATA-
1 ATAATAATAATATATAATAC
81715089 ATAA-AATAAT
1 ATAATAATAAT
81715099 CTTATAATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.21
18 4 0.14
19 3 0.11
20 9 0.32
21 6 0.21
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
ATAATAATAATATATAATAC
Found at i:81715104 original size:20 final size:22
Alignment explanation
Indices: 81715049--81715098 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
81715039 TTGTGAAAAA
81715049 AATAATATATAATATATAATACAT
1 AATAATA-AT-ATATATAATACAT
81715073 AATAATAATATATATAATA-A-
1 AATAATAATATATATAATACAT
81715093 AATAAT
1 AATAAT
81715099 CTTATAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.23
21 1 0.04
22 10 0.38
23 2 0.08
24 7 0.27
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
AATAATAATATATATAATACAT
Found at i:81718217 original size:16 final size:16
Alignment explanation
Indices: 81718198--81718231 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
81718188 AAAAATAATT
* *
81718198 AAAATTTGAAATTTTA
1 AAAATTTAAAATTCTA
81718214 AAAATTTAAAATTCTA
1 AAAATTTAAAATTCTA
81718230 AA
1 AA
81718232 CTTAATTATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (16 bp):
AAAATTTAAAATTCTA
Found at i:81726709 original size:42 final size:43
Alignment explanation
Indices: 81726604--81726746 Score: 134
Period size: 43 Copynumber: 3.3 Consensus size: 43
81726594 TCTGAGATGT
* *
81726604 CATGTAAGACCGTGTCTGGGACACAGGC--CT-TGATTGAGATTTA
1 CATGTAAGACCATGTCTGGGACAGAGGCATCTAT-ATTGA-A-TTA
* * ** * *
81726647 CGTATAAGACCATGTCTGGGACATTGGTATCGTAT-TTG-ATTT
1 CATGTAAGACCATGTCTGGGACAGAGGCATC-TATATTGAATTA
*
81726689 CATGTAAGACCTTGTCTGGGACAGAGGCATCTATATTGAATTA
1 CATGTAAGACCATGTCTGGGACAGAGGCATCTATATTGAATTA
81726732 CATGTAAGACCATGT
1 CATGTAAGACCATGT
81726747 TCGGGACGTC
Statistics
Matches: 79, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
41 3 0.04
42 30 0.38
43 40 0.51
45 4 0.05
46 1 0.01
47 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACAGAGGCATCTATATTGAATTA
Found at i:81735778 original size:129 final size:128
Alignment explanation
Indices: 81735532--81735781 Score: 281
Period size: 129 Copynumber: 1.9 Consensus size: 128
81735522 ATTTTTTCAT
** * *
81735532 TTTAAAATTCGTACTTTGATTTTTAAAAGGATATTCAGTTGTTTAGATCCAACGAGGAAAATCGA
1 TTTAAAATTCGTACTTTGAAATTTAAAAGGATATTCAGCTATTTAGATCCAACGAGGAAAATCGA
* * *
81735597 AACCCCGTAAGTTAGGGCACGACCTTCTCAAGTTTCTAAACGCAGAATATTGCCTTTATCTTA
66 AACCCCGCAAGTTAGGGCACGAACTTCTCAAGTTTCTAAACGCAGAACATTGCCTTTATCTTA
* * * * *
81735660 TTTAAAATTCATGTATTTTGAAATTTGAAAGGATATTCGGCTATTTAGGTTCAACGA-GAAAATC
1 TTTAAAATTC--GTACTTTGAAATTTAAAAGGATATTCAGCTATTTAGATCCAACGAGGAAAATC
* * * * * *
81735724 GAGACCCCGCAAGTTAGGGTAC-AATTTCTTGAATTTTCTAAATGC-GAAACATTGCCTT
64 GAAACCCCGCAAGTTAGGGCACGAACTTC-TCAAGTTTCTAAACGCAG-AACATTGCCTT
81735782 ATTATTGAAA
Statistics
Matches: 100, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
128 15 0.15
129 49 0.49
130 36 0.36
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Consensus pattern (128 bp):
TTTAAAATTCGTACTTTGAAATTTAAAAGGATATTCAGCTATTTAGATCCAACGAGGAAAATCGA
AACCCCGCAAGTTAGGGCACGAACTTCTCAAGTTTCTAAACGCAGAACATTGCCTTTATCTTA
Found at i:81736004 original size:3 final size:3
Alignment explanation
Indices: 81735996--81736053 Score: 57
Period size: 3 Copynumber: 19.3 Consensus size: 3
81735986 TAGTAACATG
* * *
81735996 AAT AAT AAT AAT AAT AAT AAT AAC AA- AAA AGAT AAT AA- AAGT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AA-T AAT
81736041 AAT AAT AAT AAT A
1 AAT AAT AAT AAT A
81736054 TCTAGATTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
2 4 0.09
3 40 0.85
4 3 0.06
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:81737876 original size:21 final size:21
Alignment explanation
Indices: 81737834--81737877 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
81737824 GATTTTGAAT
81737834 TAATTCAAATTTATTGTTTGGA
1 TAATTCAAATTTA-TGTTTGGA
81737856 TAATTCAAATTTA-GATTTGGA
1 TAATTCAAATTTATG-TTTGGA
81737877 T
1 T
81737878 TTCAACTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.05
21 7 0.33
22 13 0.62
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.48
Consensus pattern (21 bp):
TAATTCAAATTTATGTTTGGA
Found at i:81745600 original size:16 final size:16
Alignment explanation
Indices: 81745579--81745648 Score: 113
Period size: 16 Copynumber: 4.4 Consensus size: 16
81745569 AAGAAATTAA
*
81745579 GCCACCAGCGAGTGCT
1 GCCACCAGCAAGTGCT
81745595 GCCACCAGCAAGTGCT
1 GCCACCAGCAAGTGCT
*
81745611 GCCACCAGCTAGTGCT
1 GCCACCAGCAAGTGCT
*
81745627 GCCACCAGCCAGTGCT
1 GCCACCAGCAAGTGCT
81745643 GCCACC
1 GCCACC
81745649 TCCGAATCCC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.20, C:0.41, G:0.26, T:0.13
Consensus pattern (16 bp):
GCCACCAGCAAGTGCT
Found at i:81748294 original size:11 final size:11
Alignment explanation
Indices: 81748278--81748305 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
81748268 TAAAATAAAA
81748278 TAAATATTAGG
1 TAAATATTAGG
81748289 TAAATATTAGG
1 TAAATATTAGG
81748300 TAAATA
1 TAAATA
81748306 AATACAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (11 bp):
TAAATATTAGG
Found at i:81750075 original size:45 final size:44
Alignment explanation
Indices: 81749983--81750855 Score: 426
Period size: 44 Copynumber: 19.7 Consensus size: 44
81749973 TGTTTATTTT
* * * ***
81749983 TGCTCCACTGTAACTTTAGGG-G-TAAGGTTTGTGGCTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* *
81750025 TGCTCCACTACAACTTCAGGGAGATAAGATTTGTCATTTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTTTCAATC
* * * * * * ** *
81750070 CGCTCCACTGTAACTTCAGGGATATAAAACTTATAACTTCAACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* * * *
81750114 TGCTCCATTGTAACTTCAGGGAAATAAGATTTGTAGTTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* * * *
81750158 TGCTCCACTGCAACTTTAGGGAGATAATATTTATAACTTT-AATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTTTCAATC
* * *
81750202 TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTCGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATTTTCAATC
* * * * **
81750247 TACTCCACTGCAACTTCAGAGAGATAAGATCTATAACTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* * ** * *
81750291 TGTTCTAC-G--A--T-A---AGATTTGTAATTTATAACTTT-AATC
1 TGCTCCACTGCAACTTCAGGGAGATAAG--ATTTGT-ATTTTCAATC
* * * *
81750328 TG-TCCTACTGCAACTTTAGGGAAATAAGATTTGTTATCTTCGATC
1 TGCTCC-ACTGCAACTTCAGGGAGATAAGATTTG-TATTTTCAATC
* * * ** *
81750373 TACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATA
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* * *
81750417 TGCACCACTGCAACTTCAGTGAGATAAGATTTGTAATTTATAGCTTTAATT
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTT-T--C---AATC
* * *
81750468 TGTTCCACTGC-A----AGGGAAATAAGATTTGTTATCTTT-GATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAT-TTTCAATC
* ** * * * * **
81750508 TACTCCACTATAACTTCAAGTAGATAAGATCTATAACTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
* * * *
81750552 TGTTCCACTGCAACTTTAGGGATATAAGATTTGTAATTTATAGTTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-----TAT--TTTCAATC
* * * ** * *
81750603 TGTTCCACTGCAACTTCAGGGAAATAGGATTCACTATCTTCGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATT-TGTATTTTCAATC
* * * *
81750648 TACTCCACTACAACTTCAGGGAGATAAGATTTATAACTTT-AATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTTTCAATC
* * * *
81750692 TACTCCACTACAAC-TCTAAGAAGATAAGATTTGTAGTTTT-AATC
1 TGCTCCACTGCAACTTC-AGGGAGATAAGATTTGTA-TTTTCAATC
* * * * * * * *
81750736 TGCTCTACTACAACTTTAGAGAGATAGGATTTGCTATCTTCGACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATTTTCAATC
* * * * *
81750781 TTCTCCACTGCAAATTCAAGGAGATAAGGTTTGTAGCTTTC-ATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA-TTTTCAATC
*
81750825 TGCTCCACTGCAACTTCAAGGAGATAAGATT
1 TGCTCCACTGCAACTTCAGGGAGATAAGATT
81750856 CACCATAATA
Statistics
Matches: 622, Mismatches: 157, Indels: 102
0.71 0.18 0.12
Matches are distributed among these distances:
35 5 0.01
36 2 0.00
37 13 0.02
38 5 0.01
39 1 0.00
40 10 0.02
41 2 0.00
42 19 0.03
43 8 0.01
44 298 0.48
45 178 0.29
46 25 0.04
47 6 0.01
48 1 0.00
49 2 0.00
50 1 0.00
51 46 0.07
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.34
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAATC
Found at i:81750129 original size:89 final size:87
Alignment explanation
Indices: 81750017--81750855 Score: 347
Period size: 89 Copynumber: 9.4 Consensus size: 87
81750007 AGGTTTGTGG
* * *
81750017 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTCATTTTCAGTCCGCTCCACTGTA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTTTCAGTCTGCTCCACTGCA
*
81750082 ACTTCAGGGATATAAAACTTATAA
65 ACTTCAGGGAGATAAAA-TTATAA
* * * * * *
81750106 CTTCAACCTGCTCCATTGTAACTTCAGGGAAATAAGATTTGTAGTTTCAATCTGCTCCACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAGTCTGCTCCACTGCAA
* *
81750171 CTTTAGGGAGATAATATTTATAA
66 CTTCAGGGAGATAA-AATTATAA
* * * *
81750194 CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTC-GATCTACTCCACTGC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATTTTCAG-TCTGCTCCACTGC
* *
81750258 AACTTCAGAGAGATAAGATCTATAA
64 AACTTCAGGGAGATAAAAT-TATAA
* * ** * * *
81750283 CTTCAATCTGTTCTAC-G--A--T-A---AGATTTGTAATTTATAACTTT-AATCTG-TCCTACT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG--ATTTGT-ATTTTCAGTCTGCTCC-ACT
* * * * *
81750337 GCAACTTTAGGGAAATAAGATTTGTTAT
62 GCAACTTCAGGGAGATAA-AATT-ATAA
* * * * ** * * *
81750365 CTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATATGCACCACTGCAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAGTCTGCTCCACTGCAA
* *
81750430 CTTCAGTGAGATAAGATTTGTAATTTATAG
66 CTTCAGGGAGAT-A-A-----AA-TTATAA
* * * * * * **
81750460 CTTTAATTTGTTCCACTGC-A----AGGGAAATAAGATTTGTTATCTTTGA-TCTACTCCACTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAT-TTTCAGTCTGCTCCACTGC
* * *
81750519 AACTTCAAGTAGATAAGATCTATAA
64 AACTTCAGGGAGATAAAAT-TATAA
* * * *
81750544 CTTCAATCTGTTCCACTGCAACTTTAGGGATATAAGATTTGTAATTTAT-AGTTTTAATCTGTTC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTT-TCAG------TCTGCTC
* ** *
81750608 CACTGCAACTTCAGGGAAATAGGATTCACTAT
58 CACTGCAACTTCAGGGAGATAAAATT-A-TAA
* * * * * * * *
81750640 CTTCGATCTACTCCACTACAACTTCAGGGAGATAAGATTTATAACTTT-AATCTACTCCACTACA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-ATTTTCAGTCTGCTCCACTGCA
* * * * *
81750704 AC-TCTAAGAAGATAAGATTTGTAG
65 ACTTC-AGGGAGATAA-AATTATAA
* * * * * * * * * *
81750728 TTTTAATCTGCTCTACTACAACTTTAGAGAGATAGGATTTGCTATCTTC-GACCTTCTCCACTGC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATTTTCAG-TCTGCTCCACTGC
* * ** * *
81750792 AAATTCAAGGAGATAAGGTTTGTAG
64 AACTTCAGGGAGATAA-AATTATAA
*
81750817 CTTTC-ATCTGCTCCACTGCAACTTCAAGGAGATAAGATT
1 C-TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
81750856 CACCATAATA
Statistics
Matches: 555, Mismatches: 140, Indels: 110
0.69 0.17 0.14
Matches are distributed among these distances:
80 8 0.01
81 23 0.04
82 22 0.04
83 3 0.01
84 23 0.04
85 2 0.00
86 1 0.00
87 1 0.00
88 121 0.22
89 209 0.38
90 23 0.04
91 27 0.05
92 3 0.01
94 2 0.00
95 44 0.08
96 43 0.08
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (87 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATTTTCAGTCTGCTCCACTGCAA
CTTCAGGGAGATAAAATTATAA
Found at i:81750253 original size:133 final size:134
Alignment explanation
Indices: 81750017--81750851 Score: 648
Period size: 133 Copynumber: 6.3 Consensus size: 134
81750007 AGGTTTGTGG
* * * * * * * * *
81750017 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAA-GATTTGTCATTTTCAGTCCGCTCCACTGT
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAATAATTTATAACTTT-AATCTGCTCCACTGC
* * * * * * * * * * * *
81750081 AACTTCAGGGATATAAAACTT-ATAACTTCAACCTGCTCCATTGTAACTTCAGGGAAATAAGATT
65 AACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATC
* *
81750145 TGTAG
130 TATAA
*
81750150 TTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAT-ATTTATAACTTTAATCTGCTCCACTGCA
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAATAATTTATAACTTTAATCTGCTCCACTGCA
* * *
81750214 ACTTCAGAGAGATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGAGAGATAAGATCT
66 ACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCT
81750279 ATAA
131 ATAA
* * **
81750283 CTTCAATCTGTTCTAC-G--A---TA---AGATTTGTAATTTATAACTTTAATCTG-TCCTACTG
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGA-TAATAATTTATAACTTTAATCTGCTCC-ACTG
*
81750338 CAACTTTAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGAT
64 CAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGAT
81750403 CTATAA
129 CTATAA
* * * * * * *
81750409 CTTCAATATGCACCACTGCAACTTCAGTGAGATAAGATTTGTAATTTATAGCTTTAATTTGTTCC
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGAT-A-A----TAATTTATAACTTTAATCTGCTCC
* ** * *
81750474 ACTGC-A----AGGGAAATAAGATTTGTTATCTTTGATCTACTCCACTATAACTTCAAGTAGATA
60 ACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATA
81750534 AGATCTATAA
125 AGATCTATAA
* * ** *
81750544 CTTCAATCTGTTCCACTGCAACTTTAGGGATATAAGATTTGTAATTTATAGTTTTAATCTGTTCC
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGAT-A-A----TAATTTATAACTTTAATCTGCTCC
* *** *
81750609 ACTGCAACTTCAGGGAAATAGGATTCACTATCTTCGATCTACTCCACTACAACTTCAGGGAGATA
60 ACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATA
*
81750674 AGATTTATAA
125 AGATCTATAA
* * * * * * * * ** * *
81750684 CTTTAATCTACTCCACTACAACTCTAAGAAGATAA-GATTTGTAGTTTTAATCTGCTCTACTACA
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAATAATTTATAACTTTAATCTGCTCCACTGCA
* * * * * * * * * * *
81750748 ACTTTAGAGAGATAGGATTTGCTATCTTCGACCTTCTCCACTGCAAATTCAAGGAGATAAGGTTT
66 ACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCT
* *
81750813 GTAG
131 ATAA
* *
81750817 CTTTC-ATCTGCTCCACTGCAACTTCAAGGAGATAA
1 C-TTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
81750852 GATTCACCAT
Statistics
Matches: 578, Mismatches: 97, Indels: 54
0.79 0.13 0.07
Matches are distributed among these distances:
124 3 0.01
125 5 0.01
126 101 0.17
127 3 0.01
129 1 0.00
130 1 0.00
132 31 0.05
133 196 0.34
134 3 0.01
135 124 0.21
136 1 0.00
138 1 0.00
139 2 0.00
140 103 0.18
141 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (134 bp):
CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAATAATTTATAACTTTAATCTGCTCCACTGCA
ACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCT
ATAA
Found at i:81750355 original size:126 final size:127
Alignment explanation
Indices: 81750186--81750692 Score: 510
Period size: 135 Copynumber: 3.8 Consensus size: 127
81750176 GGGAGATAAT
* * *
81750186 ATTTATAACTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTTATCTTCGATCTACT
1 ATTTATAACTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACT
*
81750251 CCACTGCAACTTCAGAGAGATAAGATCTATAACTTCAATCTGTTCT-ACGATAAGATTTGTA
66 CCACTACAACTTCAGAGAGATAAGATCTATAACTTCAATCTGTTCTGACGATAAGATTTGTA
*
81750312 ATTTATAACTTTAATCTG-TCCTACTGCAACTTTAGGGAAATAAGATTTGTTATCTTCGATCTAC
1 ATTTATAACTTTAATCTGTTCC-ACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTAC
* *
81750376 TCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATATGCACCACTGCAACTTCAGTGA-G
65 TCCACTACAACTTCAGAGAGATAAGATCTATAACTTC-A-AT------CTG----TTC--TGACG
81750440 ATAAGATTTGTA
116 ATAAGATTTGTA
* * *
81750452 ATTTATAGCTTTAATTTGTTCCACTGC-A----AGGGAAATAAGATTTGTTATCTTTGATCTACT
1 ATTTATAACTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACT
*
81750512 CCACTATAACTTCA-AGTAGATAAGATCTATAACTTCAATCTGTTCCACTGCAACTTTAGGGATA
66 CCACTACAACTTCAGAG-AGATAAGATCTATAACTTCAATCTGTT---CTG--AC------G--A
81750576 TAAGATTTGTA
117 TAAGATTTGTA
** * ***
81750587 ATTTATAGTTTTAATCTGTTCCACTGCAACTTCAGGGAAATAGGATTCACTATCTTCGATCTACT
1 ATTTATAACTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACT
* * *
81750652 CCACTACAACTTCAGGGAGATAAGATTTATAACTTTAATCT
66 CCACTACAACTTCAGAGAGATAAGATCTATAACTTCAATCT
81750693 ACTCCACTAC
Statistics
Matches: 322, Mismatches: 21, Indels: 62
0.80 0.05 0.15
Matches are distributed among these distances:
123 2 0.01
124 2 0.01
125 3 0.01
126 95 0.30
127 4 0.01
128 2 0.01
133 3 0.01
134 5 0.02
135 99 0.31
136 1 0.00
138 3 0.01
139 1 0.00
140 97 0.30
141 5 0.02
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (127 bp):
ATTTATAACTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTTATCTTCGATCTACT
CCACTACAACTTCAGAGAGATAAGATCTATAACTTCAATCTGTTCTGACGATAAGATTTGTA
Found at i:81750546 original size:135 final size:136
Alignment explanation
Indices: 81750299--81750855 Score: 542
Period size: 140 Copynumber: 4.1 Consensus size: 136
81750289 TCTGTTCTAC
*
81750299 GATAAGATTTGTAATTTATAACTTTAATCTG-TCCTACTGCAACTTTAGGGAAATAAGATTTGTT
1 GATAAGATTTGTAATTTATAGCTTTAATCTGTTCC-ACTGCAA---TAGGGAAATAAGATTTGTT
* * *
81750363 ATCTTCGATCTACTCCACTGCAACTTCAGGGAGATAAGATCTATAACTTCAATATGCACCACTGC
62 ATCTTCGATCTACTCCACTACAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGC
*
81750428 AACTTCAGTGA
127 AACTTAAG-GA
*
81750439 GATAAGATTTGTAATTTATAGCTTTAATTTGTTCCACTGC-A-AGGGAAATAAGATTTGTTATCT
1 GATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAATAGGGAAATAAGATTTGTTATCT
* * * * *
81750502 TTGATCTACTCCACTATAACTTCAAGTAGATAAGATCTATAACTTCAATCTGTTCCACTGCAACT
66 TCGATCTACTCCACTACAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGCAAC-
*
81750567 TTAGGGA
130 TTAAGGA
* * * ***
81750574 TATAAGATTTGTAATTTATAGTTTTAATCTGTTCCACTGCAACTTCAGGGAAATAGGATTCACTA
1 GATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAA--T-AGGGAAATAAGATTTGTTA
* * * *
81750639 TCTTCGATCTACTCCACTACAACTTCAGGGAGATAAGATTTATAACTTTAATCTACTCCACTACA
63 TCTTCGATCTACTCCACTACAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGCA
*
81750704 ACTCTAAGAA
128 ACT-TAAGGA
* * * * * * * *
81750714 GATAAGATTTG-------TAGTTTTAATCTGCTCTACTACAACTTTAGAGAGATAGGATTTGCTA
1 GATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAA---TAGGGAAATAAGATTTGTTA
* * * * * * * * *
81750772 TCTTCGACCTTCTCCACTGCAAATTCAAGGAGATAAGGTTTGTAGCTTTC-ATCTGCTCCACTGC
63 TCTTCGATCTACTCCACTACAACTTCAGGGAGATAAGATCTATAAC-TTCAATCTGCTCCACTGC
81750836 AACTTCAAGGA
127 AACTT-AAGGA
81750847 GATAAGATT
1 GATAAGATT
81750856 CACCATAATA
Statistics
Matches: 355, Mismatches: 51, Indels: 29
0.82 0.12 0.07
Matches are distributed among these distances:
132 1 0.00
133 103 0.29
134 4 0.01
135 117 0.33
136 4 0.01
139 2 0.01
140 121 0.34
141 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.35
Consensus pattern (136 bp):
GATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAATAGGGAAATAAGATTTGTTATCT
TCGATCTACTCCACTACAACTTCAGGGAGATAAGATCTATAACTTCAATCTGCTCCACTGCAACT
TAAGGA
Found at i:81755685 original size:17 final size:18
Alignment explanation
Indices: 81755663--81755701 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
81755653 TTAATCGTTC
**
81755663 TCTTCTCCTTTTCTTT-T
1 TCTTCTCCAATTCTTTCT
81755680 TCTTCTCCAATTCTTTCT
1 TCTTCTCCAATTCTTTCT
81755698 TCTT
1 TCTT
81755702 TTACTTCACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.05, C:0.31, G:0.00, T:0.64
Consensus pattern (18 bp):
TCTTCTCCAATTCTTTCT
Found at i:81762767 original size:21 final size:18
Alignment explanation
Indices: 81762741--81762785 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 18
81762731 TTTTAAAATT
81762741 ATAAAAGGATATAAATGAATA
1 ATAAAAGGATA-AAAT-AA-A
*
81762762 ATAAAATGATAAAATAAA
1 ATAAAAGGATAAAATAAA
81762780 ATAAAA
1 ATAAAA
81762786 TAAATATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 7 0.30
19 2 0.09
20 4 0.17
21 10 0.43
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (18 bp):
ATAAAAGGATAAAATAAA
Found at i:81765321 original size:98 final size:98
Alignment explanation
Indices: 81765173--81765425 Score: 248
Period size: 98 Copynumber: 2.6 Consensus size: 98
81765163 AAACATGGTA
** * *
81765173 TTACACTGGCTTTCAC--ATCTAAGTGGATGCCATG-TCCTAGATAGGTCTTACACT-GACTTCC
1 TTACACTGGCTTTCACTTATCTGTGTAGATGCCATGTTCC-AGACAGGTCTTACACTAG-CTTCC
* * *
81765234 ATA-CATCGAGGCCGATGCCATGTCCCAAATAGGTC
64 ATATC-TCGAAGCCGATGCCATGTCCCAAACAAGTC
* **
81765269 TTACACTGGCTTTCACTTATTTGTGTAGATGCCATGTTCCAGACAGGTCTTACACTAGCTTGTAT
1 TTACACTGGCTTTCACTTATCTGTGTAGATGCCATGTTCCAGACAGGTCTTACACTAGCTTCCAT
* * * *
81765334 ATCTTGAAGCCGATGTCGTGTCCCAGACAAGTC
66 ATCTCGAAGCCGATGCCATGTCCCAAACAAGTC
* * ** * *
81765367 TTACACTGGCTCTCA-TCTATCGGTGCCGATGCCGTGTCCCAGACAGGTCTTACACTAGC
1 TTACACTGGCTTTCACT-TATCTGTGTAGATGCCATGTTCCAGACAGGTCTTACACTAGC
81765426 ACACACATCA
Statistics
Matches: 130, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
96 16 0.12
97 1 0.01
98 108 0.83
99 5 0.04
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (98 bp):
TTACACTGGCTTTCACTTATCTGTGTAGATGCCATGTTCCAGACAGGTCTTACACTAGCTTCCAT
ATCTCGAAGCCGATGCCATGTCCCAAACAAGTC
Found at i:81765360 original size:49 final size:49
Alignment explanation
Indices: 81765296--81765425 Score: 147
Period size: 49 Copynumber: 2.7 Consensus size: 49
81765286 TATTTGTGTA
* * * *
81765296 GATGCCATGTTCCAGACAGGTCTTACACTAGCT-T-GTATATCTTGAAGCC
1 GATGCCGTGTCCCAGACAGGTCTTACACTAGCTCTCATCTATC--GAAGCC
* * * **
81765345 GATGTCGTGTCCCAGACAAGTCTTACACTGGCTCTCATCTATCGGTGCC
1 GATGCCGTGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCGAAGCC
81765394 GATGCCGTGTCCCAGACAGGTCTTACACTAGC
1 GATGCCGTGTCCCAGACAGGTCTTACACTAGC
81765426 ACACACATCA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
49 61 0.91
50 1 0.01
51 5 0.07
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (49 bp):
GATGCCGTGTCCCAGACAGGTCTTACACTAGCTCTCATCTATCGAAGCC
Found at i:81766013 original size:20 final size:21
Alignment explanation
Indices: 81765988--81766029 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
81765978 AAGCTGTTTA
81765988 TTTAACAACCAAAATT-CTTT
1 TTTAACAACCAAAATTCCTTT
*
81766008 TTTAACAACCAAGATTCCTTT
1 TTTAACAACCAAAATTCCTTT
81766029 T
1 T
81766030 CTTCCATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.36, C:0.21, G:0.02, T:0.40
Consensus pattern (21 bp):
TTTAACAACCAAAATTCCTTT
Found at i:81770010 original size:19 final size:19
Alignment explanation
Indices: 81769986--81770026 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
81769976 ACAGGTATAT
81769986 CATGGATAGAAAAGGTACC
1 CATGGATAGAAAAGGTACC
*
81770005 CATGGATGGAAAAGGTACC
1 CATGGATAGAAAAGGTACC
81770024 CAT
1 CAT
81770027 AATCACATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.39, C:0.17, G:0.27, T:0.17
Consensus pattern (19 bp):
CATGGATAGAAAAGGTACC
Found at i:81779451 original size:18 final size:18
Alignment explanation
Indices: 81779424--81779462 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
81779414 ACATGGCATC
*
81779424 AGTATTGAGAAGAGTGCT
1 AGTATCGAGAAGAGTGCT
*
81779442 AGTATCGAGACGAGTGCT
1 AGTATCGAGAAGAGTGCT
81779460 AGT
1 AGT
81779463 GTAAGACATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.33, T:0.26
Consensus pattern (18 bp):
AGTATCGAGAAGAGTGCT
Found at i:81779612 original size:47 final size:44
Alignment explanation
Indices: 81779457--81779608 Score: 162
Period size: 46 Copynumber: 3.3 Consensus size: 44
81779447 CGAGACGAGT
* * *
81779457 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGACATAA
1 GCTAGTGTAAGACATGTTTGGGACATGCATC-AACTTGAGATAT-A
* **
81779503 GCCAGTGTAAGACATGTTTGGGACATGCATCGGCTTCGAGATGATA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCAACTT-GAGAT-ATA
*
81779549 G-TCAGTGTAAGACCATGTTTGGGACATGGCATTAACTTGAGATATGA
1 GCT-AGTGTAAGA-CATGTTTGGGACAT-GCATCAACTTGAGATAT-A
81779596 GCTAGTGTAAGAC
1 GCTAGTGTAAGAC
81779609 CATGCCTAGG
Statistics
Matches: 90, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
45 3 0.03
46 47 0.52
47 32 0.36
48 8 0.09
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.26
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCAACTTGAGATATA
Found at i:81784033 original size:25 final size:25
Alignment explanation
Indices: 81784005--81784056 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
81783995 ATGTAAATAA
*
81784005 TACTAGAAAAAAATATAGTTTAATT
1 TACTAGAAAAAAATAAAGTTTAATT
81784030 TACTAGAAAAAAATAAAGTTTAATT
1 TACTAGAAAAAAATAAAGTTTAATT
81784055 TA
1 TA
81784057 ATTAAACTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.35
Consensus pattern (25 bp):
TACTAGAAAAAAATAAAGTTTAATT
Found at i:81787428 original size:76 final size:80
Alignment explanation
Indices: 81787287--81787464 Score: 224
Period size: 76 Copynumber: 2.3 Consensus size: 80
81787277 GCTACTCGTT
* *
81787287 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
81787352 ATTTAGTAAC-TCGCA
65 ATATAGTAACTTAGCA
**
81787367 CAAATGCCTTC-GG-CTTAGCCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
81787428 ATATGGTCACTTAGCA
65 ATATAGTAACTTAGCA
81787444 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
81787465 CGGACATCAT
Statistics
Matches: 86, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
75 3 0.03
76 44 0.51
77 15 0.17
78 11 0.13
79 2 0.02
80 11 0.13
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCA
Found at i:81787468 original size:40 final size:40
Alignment explanation
Indices: 81787268--81787468 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
81787258 TCGAATTTAA
** *
81787268 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
81787308 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
81787348 CCGGATTTAGTAACTCGCACAAATGCCTTC-GG-CTTAG-
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
81787385 CCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
81787424 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
81787464 CCGGA
1 CCGGA
81787469 CATCATTCAA
Statistics
Matches: 142, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
36 25 0.18
37 6 0.04
38 9 0.06
39 9 0.06
40 82 0.58
41 11 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:81795263 original size:40 final size:40
Alignment explanation
Indices: 81795226--81795409 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
81795216 GCTACTCGTT
*
81795226 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
81795266 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
81795306 CAAATGCCTTC-GG-CTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
81795344 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
81795385 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81795410 CATCATTCAA
Statistics
Matches: 130, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
38 37 0.28
39 2 0.02
40 78 0.60
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:81795347 original size:78 final size:82
Alignment explanation
Indices: 81795226--81795409 Score: 247
Period size: 78 Copynumber: 2.3 Consensus size: 82
81795216 GCTACTCGTT
*
81795226 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
81795289 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
**
81795306 CAAATGCCTTC-GG-CTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
81795368 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
81795385 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81795410 CATCATTCAA
Statistics
Matches: 92, Mismatches: 7, Indels: 10
0.84 0.06 0.09
Matches are distributed among these distances:
77 3 0.03
78 53 0.58
79 14 0.15
80 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:81797780 original size:40 final size:40
Alignment explanation
Indices: 81797736--81797862 Score: 161
Period size: 40 Copynumber: 3.2 Consensus size: 40
81797726 GGCCATGTAA
81797736 GTGCATTTAGGGGTAACGAAGTACAAACAAT-GGCACGTAT
1 GTGCATTTAGGGGTAACGAAGTACAAAC-ATGGGCACGTAT
*
81797776 GTGCATTTAGGGGT-ACTGAAGTACAAACATGGGCACGTTT
1 GTGCATTTAGGGGTAAC-GAAGTACAAACATGGGCACGTAT
* * * *
81797816 GTGCATTCAGGGGTACCGAAGTACAAATA-GGAGCACATAT
1 GTGCATTTAGGGGTAACGAAGTACAAACATGG-GCACGTAT
81797856 GTGCATT
1 GTGCATT
81797863 CACTCAATAG
Statistics
Matches: 77, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
39 6 0.08
40 70 0.91
41 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.24
Consensus pattern (40 bp):
GTGCATTTAGGGGTAACGAAGTACAAACATGGGCACGTAT
Found at i:81803112 original size:29 final size:29
Alignment explanation
Indices: 81803079--81803147 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
81803069 TTTCATATTG
*
81803079 TGCCATAGTC-AAGTGCATTTCCATGGCCA
1 TGCCATAGTCTAA-TGCATTGCCATGGCCA
* * *
81803108 TGCCATGGTCTTATGTATTGCCATGGCCA
1 TGCCATAGTCTAATGCATTGCCATGGCCA
*
81803137 TGCCATGGTCT
1 TGCCATAGTCT
81803148 TATGTTCTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 34 0.97
30 1 0.03
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (29 bp):
TGCCATAGTCTAATGCATTGCCATGGCCA
Found at i:81803310 original size:101 final size:101
Alignment explanation
Indices: 81803126--81803352 Score: 305
Period size: 101 Copynumber: 2.2 Consensus size: 101
81803116 TCTTATGTAT
* ** * *
81803126 TGCCATGG-CCATGCCATGGTCTTATGTTCTTAGTGCCATAACCCGATTATGGTCTTACCATCAG
1 TGCCATGGTCCA-ACCATGGTCTTACATTCATAGTGCCATAACCAGATTATGGTCTTACCATCAG
*
81803190 AATGCCATAGCCCAACTATGGTCTTATATATATACAC
65 AATGCCATAGCCCAACTATGGTATTATATATATACAC
* *
81803227 TGTCATGGTCCAACCATGGTCTTACATTCATAGTGCCATAATCCAG-TTATGGTCTTACCATTAG
1 TGCCATGGTCCAACCATGGTCTTACATTCATAGTGCCATAA-CCAGATTATGGTCTTACCATCAG
* * * *
81803291 AATGTCATAGCCTAGCTATGGTATTATATATATACAT
65 AATGCCATAGCCCAACTATGGTATTATATATATACAC
*
81803328 TGCCATGGTCTAACCATGGTCTTAC
1 TGCCATGGTCCAACCATGGTCTTAC
81803353 GTCTGAATAG
Statistics
Matches: 110, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
101 104 0.95
102 6 0.05
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.33
Consensus pattern (101 bp):
TGCCATGGTCCAACCATGGTCTTACATTCATAGTGCCATAACCAGATTATGGTCTTACCATCAGA
ATGCCATAGCCCAACTATGGTATTATATATATACAC
Found at i:81806171 original size:13 final size:13
Alignment explanation
Indices: 81806155--81806180 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81806145 CCCTTTATGT
81806155 TTCTCCTTAAATA
1 TTCTCCTTAAATA
81806168 TTCTCCTTAAATA
1 TTCTCCTTAAATA
81806181 ACAAATGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (13 bp):
TTCTCCTTAAATA
Found at i:81808034 original size:13 final size:13
Alignment explanation
Indices: 81808002--81808026 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81807992 AGATATCAAA
81808002 CTTACCATTCATT
1 CTTACCATTCATT
81808015 CTTACCATTCAT
1 CTTACCATTCAT
81808027 ATTTACCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (13 bp):
CTTACCATTCATT
Found at i:81808676 original size:46 final size:45
Alignment explanation
Indices: 81808565--81808686 Score: 145
Period size: 46 Copynumber: 2.7 Consensus size: 45
81808555 TTCAAAGTAG
* **
81808565 TGTCATAGTATCTTTCAACTATGGTCTTATTTGTATAGGATTCAA
1 TGTCATAGTATCTTTCAACTATGGTCTTATTAGTATACAATTCAA
* * * * * *
81808610 TGTCATAATATCTTTCAACTATAGTCTTATATAGTTTCCAATTTAT
1 TGTCATAGTATCTTTCAACTATGGTCTTAT-TAGTATACAATTCAA
*
81808656 TTTCATAGTATCTTTCAACTATGGTCTTATT
1 TGTCATAGTATCTTTCAACTATGGTCTTATT
81808687 CATCCCAGTT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 29 0.45
46 35 0.55
ACGTcount: A:0.27, C:0.15, G:0.11, T:0.48
Consensus pattern (45 bp):
TGTCATAGTATCTTTCAACTATGGTCTTATTAGTATACAATTCAA
Found at i:81820996 original size:31 final size:31
Alignment explanation
Indices: 81820958--81821022 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
81820948 ATTTATAGTC
81820958 TTTAGAATGCTCAAAAAGCCTAAAAATTGGG
1 TTTAGAATGCTCAAAAAGCCTAAAAATTGGG
81820989 TTTAGAATGCTCAAAAAGCCTAAAAATTGGG
1 TTTAGAATGCTCAAAAAGCCTAAAAATTGGG
81821020 TTT
1 TTT
81821023 TTCTACATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.29
Consensus pattern (31 bp):
TTTAGAATGCTCAAAAAGCCTAAAAATTGGG
Found at i:81829550 original size:13 final size:13
Alignment explanation
Indices: 81829532--81829558 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81829522 GGAGTAATCA
81829532 CACACGGGCATGT
1 CACACGGGCATGT
81829545 CACACGGGCATGT
1 CACACGGGCATGT
81829558 C
1 C
81829559 CCTACCTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACGGGCATGT
Found at i:81830663 original size:13 final size:12
Alignment explanation
Indices: 81830641--81830701 Score: 52
Period size: 13 Copynumber: 4.7 Consensus size: 12
81830631 TAAGTTTAAG
*
81830641 AAAATAAAAATAA
1 AAAATAAAAA-AT
81830654 AAAACTAAAAAAAT
1 AAAA-T-AAAAAAT
81830668 AAAATATAAAAAT
1 AAAATA-AAAAAT
81830681 AAAATGAAAAAA-
1 AAAAT-AAAAAAT
81830693 AGAAATAAA
1 A-AAATAAA
81830702 CTCAATCATA
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
12 5 0.12
13 25 0.60
14 7 0.17
15 5 0.12
ACGTcount: A:0.80, C:0.02, G:0.03, T:0.15
Consensus pattern (12 bp):
AAAATAAAAAAT
Found at i:81830918 original size:5 final size:5
Alignment explanation
Indices: 81830885--81830917 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
81830875 TAACAAATAA
*
81830885 TAAA- TAAAT TAAAT TAAAT TAAAT TAAAG TAAA
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAAT TAAA
81830918 GAAAAGGGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (5 bp):
TAAAT
Found at i:81832591 original size:49 final size:49
Alignment explanation
Indices: 81832512--81832758 Score: 314
Period size: 49 Copynumber: 5.0 Consensus size: 49
81832502 TCTATTGTGA
* *
81832512 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
81832561 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA--TT
* * * *** **
81832612 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGTTAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* *
81832661 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* *
81832711 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAAT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAAT
81832759 CTTGTCTACA
Statistics
Matches: 169, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 88 0.52
50 43 0.25
51 38 0.22
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:81832648 original size:28 final size:28
Alignment explanation
Indices: 81832616--81832699 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 28
81832606 AACTTTGATC
81832616 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* *
81832644 ACGTGTGTTAG-A-T-GGT-TAGG-T-C-
1 ACGTGTG-TAGTACTAAGTGCAGGCTACT
81832666 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
81832694 ACGTGT
1 ACGTGT
81832700 ACCAGATAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
21 3 0.07
22 8 0.18
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.32
29 3 0.07
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:81832702 original size:101 final size:98
Alignment explanation
Indices: 81832514--81832758 Score: 310
Period size: 101 Copynumber: 2.5 Consensus size: 98
81832504 TATTGTGAGG
* * *
81832514 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
* *
81832579 AAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
66 AAGTGCAGGCTACTACGCGTACCAGATAA--TTGA
*** ** *
81832614 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTGTTAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* *
81832679 TAAGTGCAGGCTACTACGTGTACCAGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCAGATAATTGA
* * * *
81832713 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAAT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
81832759 CTTGTCTACA
Statistics
Matches: 122, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
99 40 0.33
100 40 0.33
101 42 0.34
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCAGATAATTGA
Found at i:81835262 original size:50 final size:50
Alignment explanation
Indices: 81835203--81835303 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
81835193 TGAATCATAT
*
81835203 AAAAGGACACGATCCCCAACTATGAATTGTTTGGGCTGCTTCAAACGAGC
1 AAAAGGACACGATCCCCAACTATGAATTGTTTGGGCTACTTCAAACGAGC
* *
81835253 AAAAGGACACGATCCCCAACTGTGAATTGTTTGGGCTACTTCAAATGAGC
1 AAAAGGACACGATCCCCAACTATGAATTGTTTGGGCTACTTCAAACGAGC
81835303 A
1 A
81835304 TCTTGGCGTC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.23
Consensus pattern (50 bp):
AAAAGGACACGATCCCCAACTATGAATTGTTTGGGCTACTTCAAACGAGC
Found at i:81845624 original size:14 final size:14
Alignment explanation
Indices: 81845588--81845624 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
81845578 GATTTCTCCC
*
81845588 TTTCCCTATTCCTT
1 TTTCCCTTTTCCTT
81845602 TTTCCCTTTTCCTT
1 TTTCCCTTTTCCTT
*
81845616 TTTCTCTTT
1 TTTCCCTTT
81845625 GTCATCCACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTCCCTTTTCCTT
Found at i:81845991 original size:28 final size:30
Alignment explanation
Indices: 81845952--81846019 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
81845942 CTTTTATTCA
81845952 TTATCTTTA-TTTGTTAATTTTTATTATA-T
1 TTAT-TTTATTTTGTTAATTTTTATTATAGT
* *
81845981 TTATTTTATTTTTTGTTATTTTTTATTTTAGT
1 TTATTTTA--TTTTGTTAATTTTTATTATAGT
81846013 TTATTTT
1 TTATTTT
81846020 CATTCATTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
28 4 0.12
29 4 0.12
31 17 0.52
32 8 0.24
ACGTcount: A:0.19, C:0.01, G:0.04, T:0.75
Consensus pattern (30 bp):
TTATTTTATTTTGTTAATTTTTATTATAGT
Found at i:81846016 original size:17 final size:17
Alignment explanation
Indices: 81845969--81846019 Score: 56
Period size: 15 Copynumber: 3.2 Consensus size: 17
81845959 TATTTGTTAA
*
81845969 TTTTTATTATA-TTTAT
1 TTTTTATTTTAGTTTAT
81845985 TTTATT-TTTT-G-TTAT
1 TTT-TTATTTTAGTTTAT
81846000 TTTTTATTTTAGTTTAT
1 TTTTTATTTTAGTTTAT
81846017 TTT
1 TTT
81846020 CATTCATTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
14 2 0.07
15 11 0.38
16 7 0.24
17 9 0.31
ACGTcount: A:0.18, C:0.00, G:0.04, T:0.78
Consensus pattern (17 bp):
TTTTTATTTTAGTTTAT
Found at i:81847676 original size:6 final size:6
Alignment explanation
Indices: 81847665--81847717 Score: 52
Period size: 6 Copynumber: 8.7 Consensus size: 6
81847655 TGTTATTTTC
* * * * *
81847665 TTTTAT TTTTAT TATTAGT TTTCAT TTTTAT TTTTCT GTTTAT TTATAT
1 TTTTAT TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
81847714 TTTT
1 TTTT
81847718 TAGACTCTTT
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
6 32 0.89
7 4 0.11
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.75
Consensus pattern (6 bp):
TTTTAT
Found at i:81848638 original size:49 final size:49
Alignment explanation
Indices: 81848582--81848680 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
81848572 AAAATTTTTT
81848582 TCGAGATTTGATTTGGTTAACTTCCTAACTATGTTCTTTTGTTCAGTTG
1 TCGAGATTTGATTTGGTTAACTTCCTAACTATGTTCTTTTGTTCAGTTG
81848631 TCGAGATTTGATTTGGTTAACTTCCTAACTATGTTCTTTTGTTCAGTTG
1 TCGAGATTTGATTTGGTTAACTTCCTAACTATGTTCTTTTGTTCAGTTG
81848680 T
1 T
81848681 TAAATTATCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.18, C:0.14, G:0.18, T:0.49
Consensus pattern (49 bp):
TCGAGATTTGATTTGGTTAACTTCCTAACTATGTTCTTTTGTTCAGTTG
Found at i:81860329 original size:25 final size:25
Alignment explanation
Indices: 81860300--81860353 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
81860290 TCTTTAGGGT
81860300 ATTTTT-GGGTTT-TTAATGTTTAAG
1 ATTTTTAGGGTTTGTTAAT-TTTAAG
*
81860324 ATTTTTAGGGTTTGGTTAGTTTTAAG
1 ATTTTTAGGGTTT-GTTAATTTTAAG
81860350 ATTT
1 ATTT
81860354 AAGGTTTTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 6 0.23
25 6 0.23
26 10 0.38
27 4 0.15
ACGTcount: A:0.20, C:0.00, G:0.22, T:0.57
Consensus pattern (25 bp):
ATTTTTAGGGTTTGTTAATTTTAAG
Found at i:81864273 original size:30 final size:30
Alignment explanation
Indices: 81864237--81864312 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
81864227 TGGTTAACCC
* * * *
81864237 ATCCCTTTTCATAATTCGATAATCGAAGTT
1 ATCCCTTTTCATAATTCAACAACCGAAGCT
* *
81864267 ATCCCTTTTCATAGTTCAACAGCCGAAGCT
1 ATCCCTTTTCATAATTCAACAACCGAAGCT
*
81864297 ATCCATTTTCATAATT
1 ATCCCTTTTCATAATT
81864313 TGATGGTTAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCAACAACCGAAGCT
Found at i:81864336 original size:30 final size:30
Alignment explanation
Indices: 81864297--81864490 Score: 112
Period size: 30 Copynumber: 6.5 Consensus size: 30
81864287 AGCCGAAGCT
* * *
81864297 ATCCATTTTCATAATTTGATGGTTATCATC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
**
81864327 ATCCCTTTTCATTGTTTGATGGTCATCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
* * *
81864357 AT-CCTTTCTCATAATTTGATAG-C-TGAAGCT
1 ATCCCTTT-TCATAATTTGATGGTCAT-CA-CC
* * * * * *
81864387 ATTCCTTTTCATAAATCGATAGCCGA-AACC
1 ATCCCTTTTCATAATTTGATGGTC-ATCACC
* * * *
81864417 ATCCCTCTTCAAAATTTGATTGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
** *
81864447 ATCTATTTTCAT--TGTTGATGGTCGTCACC
1 ATCCCTTTTCATAAT-TTGATGGTCATCACC
81864476 ATCCCTTTTCATAAT
1 ATCCCTTTTCATAAT
81864491 AGACAACTGA
Statistics
Matches: 124, Mismatches: 29, Indels: 21
0.71 0.17 0.12
Matches are distributed among these distances:
28 2 0.02
29 31 0.25
30 82 0.66
31 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.41
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTCATCACC
Found at i:81864470 original size:29 final size:29
Alignment explanation
Indices: 81864432--81864487 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
81864422 TCTTCAAAAT
* *
81864432 TTGATTGTCGTCACCATCTATTTTCATTG
1 TTGATGGTCGTCACCATCCATTTTCATTG
*
81864461 TTGATGGTCGTCACCATCCCTTTTCAT
1 TTGATGGTCGTCACCATCCATTTTCAT
81864488 AATAGACAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.16, C:0.25, G:0.14, T:0.45
Consensus pattern (29 bp):
TTGATGGTCGTCACCATCCATTTTCATTG
Found at i:81866098 original size:26 final size:26
Alignment explanation
Indices: 81866069--81866176 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
81866059 TGGTACAAAT
81866069 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81866095 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81866121 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81866147 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81866173 TGAT
1 TGAT
81866177 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81867689 original size:26 final size:26
Alignment explanation
Indices: 81867659--81867711 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
81867649 TTTATAGTTT
81867659 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
81867685 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
81867711 T
1 T
81867712 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:81870901 original size:14 final size:14
Alignment explanation
Indices: 81870882--81870914 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
81870872 TAGTTGATTC
81870882 TTATTAATATGTTG
1 TTATTAATATGTTG
81870896 TTATTAATATGTTG
1 TTATTAATATGTTG
81870910 TTATT
1 TTATT
81870915 GAATGATTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (14 bp):
TTATTAATATGTTG
Found at i:81874158 original size:22 final size:22
Alignment explanation
Indices: 81874133--81874174 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
81874123 TGATGGATGC
*
81874133 GTATTGAGTTA-TAATATGTAAT
1 GTATT-AGTTAGTAAAATGTAAT
81874155 GTATTAGTTAGTAAAATGTA
1 GTATTAGTTAGTAAAATGTA
81874175 TGTCATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (22 bp):
GTATTAGTTAGTAAAATGTAAT
Found at i:81875073 original size:40 final size:40
Alignment explanation
Indices: 81874835--81875059 Score: 414
Period size: 40 Copynumber: 5.6 Consensus size: 40
81874825 GGATTGATAC
*
81874835 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
81874875 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
81874915 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
81874955 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
81874995 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
81875035 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
81875060 AGCTAGTAGC
Statistics
Matches: 181, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:81883405 original size:40 final size:40
Alignment explanation
Indices: 81883207--81883391 Score: 352
Period size: 40 Copynumber: 4.6 Consensus size: 40
81883197 GGATTGATAC
*
81883207 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
81883247 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
81883287 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
81883327 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
81883367 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
81883392 AGCTAGTAGC
Statistics
Matches: 142, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:81883405 original size:80 final size:80
Alignment explanation
Indices: 81883207--81883414 Score: 357
Period size: 80 Copynumber: 2.6 Consensus size: 80
81883197 GGATTGATAC
81883207 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
81883272 TGCGAGTTACTATAA
66 TGCGAGTTACTATAA
* *
81883287 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
81883352 TGCGAGTTACTATAA
66 TGCGAGTTACTATAA
* *
81883367 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAA
81883415 ACTCCGAAGG
Statistics
Matches: 121, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
79 8 0.07
80 113 0.93
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAA
Found at i:81893784 original size:12 final size:12
Alignment explanation
Indices: 81893769--81893793 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81893759 GTGAAAAAAT
81893769 AAAATAAAATAA
1 AAAATAAAATAA
81893781 AAAATAAAATAA
1 AAAATAAAATAA
81893793 A
1 A
81893794 GAACACACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:81898174 original size:5 final size:5
Alignment explanation
Indices: 81898164--81898191 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
81898154 AATTTGTGAA
81898164 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
81898192 GAACACACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Done.