Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 251 of 325
Found at i:81910193 original size:32 final size:31
Alignment explanation
Indices: 81910157--81910228 Score: 119
Period size: 32 Copynumber: 2.3 Consensus size: 31
81910147 TTGTGCTGAA
*
81910157 TTCTATTCTTCCTCTACCTTATTTTTGACTTT
1 TTCTATTCTTCCTCTACCTCATTTTTGAC-TT
81910189 TTCTATTCTTCCTCTACCTCATTTTTGACTT
1 TTCTATTCTTCCTCTACCTCATTTTTGACTT
81910220 TTCT-TTCTT
1 TTCTATTCTT
81910229 TTTCCTTAGA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
30 5 0.13
31 6 0.15
32 28 0.72
ACGTcount: A:0.11, C:0.26, G:0.03, T:0.60
Consensus pattern (31 bp):
TTCTATTCTTCCTCTACCTCATTTTTGACTT
Found at i:81911057 original size:29 final size:28
Alignment explanation
Indices: 81911024--81911120 Score: 108
Period size: 29 Copynumber: 3.4 Consensus size: 28
81911014 TAATATGATA
81911024 TGGGCCATATGAATGAGAATTGGGCCTAG
1 TGGGCCATATGAAT-AGAATTGGGCCTAG
* *
81911053 TGGGCCATAAGAATATGAACTGGG-CTAG
1 TGGGCCATATGAATA-GAATTGGGCCTAG
* *
81911081 ATGGGTCATTTGAATA-AGATTGGGCCTAG
1 -TGGGCCATATGAATAGA-ATTGGGCCTAG
81911110 TGGGCCATATG
1 TGGGCCATATG
81911121 CATGTATGCA
Statistics
Matches: 56, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
27 1 0.02
28 19 0.34
29 36 0.64
ACGTcount: A:0.28, C:0.13, G:0.33, T:0.26
Consensus pattern (28 bp):
TGGGCCATATGAATAGAATTGGGCCTAG
Found at i:81920794 original size:15 final size:16
Alignment explanation
Indices: 81920769--81920799 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
81920759 TCTCTCTCTA
81920769 TTAATAAATTAAAATT
1 TTAATAAATTAAAATT
81920785 TTAA-AAATTAAAATT
1 TTAATAAATTAAAATT
81920800 CTATACTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TTAATAAATTAAAATT
Found at i:81931679 original size:16 final size:16
Alignment explanation
Indices: 81931637--81931682 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 16
81931627 TTTAAAATTT
*
81931637 TGTAATGTTTTATATTA
1 TGTAAT-TTATATATTA
81931654 TGCTATATTTATATATTA
1 TG-TA-ATTTATATATTA
81931672 TGTAATTTATA
1 TGTAATTTATA
81931683 ACACATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 7 0.27
17 4 0.15
18 13 0.50
19 2 0.08
ACGTcount: A:0.33, C:0.02, G:0.09, T:0.57
Consensus pattern (16 bp):
TGTAATTTATATATTA
Found at i:81932690 original size:18 final size:15
Alignment explanation
Indices: 81932669--81932716 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 15
81932659 AATTAATTCT
81932669 TTTTTTTCTTTTACATTA
1 TTTTTTTCTTTT---TTA
*
81932687 TTTTTCTCTTTTTTA
1 TTTTTTTCTTTTTTA
81932702 TTTTTTCTCTTTTTT
1 TTTTTT-TCTTTTTT
81932717 CTTTCTTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 8 0.30
16 8 0.30
18 11 0.41
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTTTCTTTTTTA
Found at i:81932725 original size:16 final size:16
Alignment explanation
Indices: 81932684--81932725 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
81932674 TTCTTTTACA
81932684 TTATTT-TTCTCTTTT
1 TTATTTCTTCTCTTTT
*
81932699 TTATTTTTTCTCTTTT
1 TTATTTCTTCTCTTTT
*
81932715 TTCTTTCTTCT
1 TTATTTCTTCT
81932726 TCATTTAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 6 0.25
16 18 0.75
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.79
Consensus pattern (16 bp):
TTATTTCTTCTCTTTT
Found at i:81934065 original size:7 final size:7
Alignment explanation
Indices: 81934053--81934096 Score: 70
Period size: 7 Copynumber: 6.1 Consensus size: 7
81934043 TTATATGTAC
81934053 TAATAAA
1 TAATAAA
81934060 TAATAAA
1 TAATAAA
81934067 TAATAAA
1 TAATAAA
81934074 TAATAAAA
1 TAAT-AAA
*
81934082 TAATATA
1 TAATAAA
81934089 TAATAAA
1 TAATAAA
81934096 T
1 T
81934097 GAAGATAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
7 27 0.79
8 7 0.21
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
TAATAAA
Found at i:81934125 original size:7 final size:7
Alignment explanation
Indices: 81934113--81934218 Score: 55
Period size: 7 Copynumber: 15.9 Consensus size: 7
81934103 AATATAGGGA
81934113 ATAATAT
1 ATAATAT
81934120 ATAATA-
1 ATAATAT
81934126 A-AATAT
1 ATAATAT
81934132 ATAATAT
1 ATAATAT
81934139 ATAATA-
1 ATAATAT
**
81934145 A-AAGCT
1 ATAATAT
81934151 ATAA-AT
1 ATAATAT
*
81934157 AAAATAT
1 ATAATAT
*
81934164 ATAAAAT
1 ATAATAT
*
81934171 ATAAATAAC
1 AT-AAT-AT
* *
81934180 ATGATAA
1 ATAATAT
*
81934187 ATAATAC
1 ATAATAT
81934194 ATAA-AT
1 ATAATAT
*
81934200 A-AAAAT
1 ATAATAT
*
81934206 ATTATAT
1 ATAATAT
81934213 ATAATA
1 ATAATA
81934219 ATTTTACATG
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
5 8 0.11
6 13 0.18
7 46 0.62
8 4 0.05
9 3 0.04
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (7 bp):
ATAATAT
Found at i:81934167 original size:9 final size:10
Alignment explanation
Indices: 81934112--81934174 Score: 67
Period size: 9 Copynumber: 6.2 Consensus size: 10
81934102 TAATATAGGG
*
81934112 AATAATATAT
1 AATAAAATAT
81934122 AATAAAATAT
1 AATAAAATAT
*
81934132 -ATAATATAT
1 AATAAAATAT
81934141 AATAAAAGCTAT
1 AATAAAA--TAT
81934153 AAATAAAATAT
1 -AATAAAATAT
81934164 -ATAAAATAT
1 AATAAAATAT
81934173 AA
1 AA
81934175 ATAACATGAT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
9 17 0.38
10 15 0.33
11 3 0.07
12 3 0.07
13 7 0.16
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (10 bp):
AATAAAATAT
Found at i:81934216 original size:15 final size:15
Alignment explanation
Indices: 81934198--81934311 Score: 54
Period size: 15 Copynumber: 7.4 Consensus size: 15
81934188 TAATACATAA
81934198 ATAAAAATATTATAT
1 ATAAAAATATTATAT
* * *
81934213 ATAATAATTTTACAT
1 ATAAAAATATTATAT
* ** * *
81934228 GTCTAAATAATATTT
1 ATAAAAATATTATAT
*
81934243 ATAAAAATAAATAATAT
1 ATAAAAAT--ATTATAT
*
81934260 ATATAAAATATT-TAAA
1 ATA-AAAATATTAT-AT
81934276 ATAAATAA-ATTATAT
1 ATAAA-AATATTATAT
*
81934291 AT-AAAATGTATATAT
1 ATAAAAATAT-TATAT
81934306 ATAAAA
1 ATAAAA
81934312 GGATTAAAAC
Statistics
Matches: 69, Mismatches: 21, Indels: 17
0.64 0.20 0.16
Matches are distributed among these distances:
13 2 0.03
14 3 0.04
15 40 0.58
16 12 0.17
17 7 0.10
18 5 0.07
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (15 bp):
ATAAAAATATTATAT
Found at i:81934253 original size:19 final size:19
Alignment explanation
Indices: 81934231--81934267 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
81934221 TTTACATGTC
*
81934231 TAAATAATATTTATAAAAA
1 TAAATAATATATATAAAAA
81934250 TAAATAATATATATAAAA
1 TAAATAATATATATAAAA
81934268 TATTTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TAAATAATATATATAAAAA
Found at i:81934265 original size:9 final size:9
Alignment explanation
Indices: 81934242--81934302 Score: 52
Period size: 9 Copynumber: 6.7 Consensus size: 9
81934232 AAATAATATT
81934242 TATA-AAAA
1 TATATAAAA
* *
81934250 TAAATAATA
1 TATATAAAA
81934259 TATATAAAA
1 TATATAAAA
*
81934268 TATTTAAAA
1 TATATAAAA
*
81934277 TAAATAAATTA
1 TATATAAA--A
81934288 TATATAAAA
1 TATATAAAA
*
81934297 TGTATA
1 TATATA
81934303 TATATAAAAG
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
8 3 0.07
9 30 0.73
11 8 0.20
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (9 bp):
TATATAAAA
Found at i:81934285 original size:31 final size:28
Alignment explanation
Indices: 81934236--81934297 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 28
81934226 ATGTCTAAAT
*
81934236 AATATTTATAAAAATAAATAATATATATAA
1 AATATTTAAAAAAATAAAT--TATATATAA
81934266 AATATTTAAAATAAATAAATTATATATAA
1 AATATTTAAAA-AAATAAATTATATATAA
81934295 AAT
1 AAT
81934298 GTATATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 12 0.40
30 10 0.33
31 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (28 bp):
AATATTTAAAAAAATAAATTATATATAA
Found at i:81937350 original size:19 final size:19
Alignment explanation
Indices: 81937328--81937368 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
81937318 ACTAACTAGA
81937328 ACTAGACATGCTAAATCTT
1 ACTAGACATGCTAAATCTT
81937347 ACTAGACATGCTAAATCTT
1 ACTAGACATGCTAAATCTT
81937366 ACT
1 ACT
81937369 CTCATTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.32
Consensus pattern (19 bp):
ACTAGACATGCTAAATCTT
Found at i:81939576 original size:30 final size:31
Alignment explanation
Indices: 81939536--81939593 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
81939526 CAAAATCATA
*
81939536 TTTGTTCAAAATTACAATTTTGCCCCTAAAC
1 TTTGTTCAAAATTACAATTTTACCCCTAAAC
*
81939567 TTTG-TCAAAATTACATTTTTACCCCTA
1 TTTGTTCAAAATTACAATTTTACCCCTA
81939594 GACTCGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.41
Consensus pattern (31 bp):
TTTGTTCAAAATTACAATTTTACCCCTAAAC
Found at i:81946005 original size:29 final size:30
Alignment explanation
Indices: 81945946--81946003 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
81945936 TCATATTTTT
81945946 TCAAAATTACAATTTTGCCCCTAAACTTTG
1 TCAAAATTACAATTTTGCCCCTAAACTTTG
* *
81945976 TCAAAATTACATTTTTGCCCCTAGACTT
1 TCAAAATTACAATTTTGCCCCTAAACTT
81946004 GTAAATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TCAAAATTACAATTTTGCCCCTAAACTTTG
Found at i:81949071 original size:47 final size:47
Alignment explanation
Indices: 81949002--81949127 Score: 216
Period size: 47 Copynumber: 2.7 Consensus size: 47
81948992 TTTTATGTGT
*
81949002 ATATATGCGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
* *
81949049 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATATGAACATGG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
*
81949096 ATATATGTGATAAGGCCGAATGGCTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
81949128 AATACGTATG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
Found at i:81949166 original size:48 final size:48
Alignment explanation
Indices: 81949097--81949374 Score: 416
Period size: 48 Copynumber: 5.8 Consensus size: 48
81949087 TGAACATGGA
* * * *
81949097 TATATGTGATAAGGCCGAATGGCTAATGTGAAATACGTATGAGATATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
81949145 TATATGTAGTAAAGCCGAATGGCTAATGTGAAGTATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
81949193 CATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
81949241 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATGTATGAGATATG
* * *
81949289 TAAATATGGTAAAGCC-AATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
81949336 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
81949375 GGCGATGTGC
Statistics
Matches: 210, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
47 42 0.20
48 168 0.80
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:81949330 original size:143 final size:144
Alignment explanation
Indices: 81949098--81949374 Score: 423
Period size: 143 Copynumber: 1.9 Consensus size: 144
81949088 GAACATGGAT
* * * *
81949098 ATATGTGATAAGGCCGAATGGCTAATGTGAAATACGTATGAGATATATATATGTAGTAAAGCCGA
1 ATATGTGATAAAGCCGAATGGCTAATGTGAAATACATATGAGATATATAAATATAGTAAAGCCGA
*
81949163 ATGGCTAATGTGAAGTATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
66 ATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
81949228 TGTATGAGATATGC
131 TGTATGAGATATGC
* * * *
81949242 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATGAGATATGTAAATATGGTAAAGCC-
1 ATATGTGATAAAGCCGAATGGCT-AATGTGAAATACATATGAGATATATAAATATAGTAAAGCCG
* * *
81949305 AATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
65 AATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
81949370 ATGTA
130 ATGTA
81949375 GGCGATGTGC
Statistics
Matches: 120, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
143 67 0.56
144 53 0.44
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (144 bp):
ATATGTGATAAAGCCGAATGGCTAATGTGAAATACATATGAGATATATAAATATAGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
TGTATGAGATATGC
Found at i:81949415 original size:95 final size:95
Alignment explanation
Indices: 81949050--81949374 Score: 392
Period size: 95 Copynumber: 3.4 Consensus size: 95
81949040 TGAACATGCA
* * * * * *
81949050 TATATGTGTTAAGGCCGAATGGCCAATGTG--ATGA-ATATGA-ACATGGATATATGTGATAAGG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT-ATGTATGAGATATGCATATATG-G-TAA-G
* *
81949111 CCGAATGGCTAATGTGAAATACGTATGAGATATA
62 CCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
81949145 TATATGTAGTAAAGCCGAATGGCTAATGTGAAGTATGTATGAGATATGCATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATATGGT-AAGCCG
81949210 AATGGCTAATGTGAAATATGTATGAGATATG
65 AATGGCTAATGTGAAATATGTATGAGATATG
* * * *
81949241 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATGAGATATGTAAATATGGTAAAGCC
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATGTATGAGATATGCATATATGGT-AAGCC
*
81949305 -AATGGCTAGTGTGAAATATGTATGAGATATG
64 GAATGGCTAATGTGAAATATGTATGAGATATG
*
81949336 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
81949375 GGCGATGTGC
Statistics
Matches: 201, Mismatches: 22, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
95 91 0.45
96 91 0.45
97 9 0.04
98 10 0.05
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (95 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATATGGTAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATG
Found at i:81949629 original size:37 final size:36
Alignment explanation
Indices: 81949523--81949629 Score: 160
Period size: 37 Copynumber: 2.9 Consensus size: 36
81949513 AAATATATTC
* *
81949523 CGGGTAAGACCCGATGACTACGTGCGGAGATTATGT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGT
81949559 CTGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTT
1 C-GGGTAAGACCCGATGACTACGTGTGGAGATTTTG-T
* *
81949597 CGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTT
81949630 CATCTGAGCT
Statistics
Matches: 65, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
36 1 0.02
37 62 0.95
38 2 0.03
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (36 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGT
Found at i:81950955 original size:40 final size:40
Alignment explanation
Indices: 81950899--81951343 Score: 611
Period size: 40 Copynumber: 11.1 Consensus size: 40
81950889 GAGAATTGAG
* *
81950899 AGTGATATATCCGGGCTAAGTCCCGAAGGGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
*
81950939 AGTGATATATCTGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
* * * *
81950979 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
81951019 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
* * * *
81951059 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
81951099 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
* * * *
81951139 AGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
*
81951179 AGTGATATATCCGGGATAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
* * ** *
81951219 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
* ** *
81951259 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
* * * * *
81951299 GGTGTTATATCCGGGCTAGGTCCCGAAGAACAATCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
*
81951339 GGTGA
1 AGTGA
81951344 CGTGTATTCG
Statistics
Matches: 353, Mismatches: 52, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 353 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
Found at i:81951035 original size:80 final size:80
Alignment explanation
Indices: 81950899--81951327 Score: 687
Period size: 80 Copynumber: 5.4 Consensus size: 80
81950889 GAGAATTGAG
* * * * *
81950899 AGTGATATATCCGGGCTAAGTCCCGAAGGGCATTCGTGCTAGTGATATATCTGGGCTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
81950964 AAGAGCATTCATGCT
66 AAGAGCATTCATGCT
81950979 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
81951044 AAGAGCATTCATGCT
66 AAGAGCATTCATGCT
81951059 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
81951124 AAGAGCATTCATGCT
66 AAGAGCATTCATGCT
* * *
81951139 AGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCATGCTAGTGATATATCCGGGATAAGTCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
81951204 AAGAGCATTCATGCT
66 AAGAGCATTCATGCT
* * **
81951219 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
*
81951284 AAGAGCATTCGTGCT
66 AAGAGCATTCATGCT
* * * * * *
81951299 GGTGTTATATCCGGGCTAGGTCCCGAAGA
1 AGTGATGTATCCGGACTAAGTTCCGAAGA
81951328 ACAATCATGC
Statistics
Matches: 326, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 326 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
AAGAGCATTCATGCT
Found at i:81951548 original size:25 final size:25
Alignment explanation
Indices: 81951507--81951557 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
81951497 GTGTAATAAC
81951507 GAATGAATAAGAGCACTATGTGTGT
1 GAATGAATAAGAGCACTATGTGTGT
* *
81951532 GAATG-ATTAGAGACACTGTGTGTGT
1 GAATGAATAAGAG-CACTATGTGTGT
81951557 G
1 G
81951558 CGAATTCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (25 bp):
GAATGAATAAGAGCACTATGTGTGT
Found at i:81955445 original size:44 final size:46
Alignment explanation
Indices: 81955382--81955503 Score: 187
Period size: 46 Copynumber: 2.7 Consensus size: 46
81955372 TTTTATGTGT
*
81955382 ATATATGCGATAAGGCCGAATGGCCAATGTGATG-A-ATGAACA-G
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATG
*
81955425 CATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATATGAACATG
1 -ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATG
*
81955472 ATATATGTGATAAGGCCGAATGGCTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
81955504 ATACGTATGA
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
44 32 0.45
45 1 0.01
46 37 0.52
47 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.25
Consensus pattern (46 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATG
Found at i:81955586 original size:48 final size:48
Alignment explanation
Indices: 81955474--81955750 Score: 391
Period size: 48 Copynumber: 5.8 Consensus size: 48
81955464 TGAACATGAT
* * *
81955474 ATATGTGATAAGGCCGAATGGCTAATGTG-AATACGTATGAGATAT--
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* *
81955519 ATATGTAGTAAAGCCGAATGGCTAATGTGAAGTATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
81955567 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* *
81955615 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGC
* * * *
81955665 AAATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
*
81955713 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
81955751 GGCGATGTGC
Statistics
Matches: 210, Mismatches: 15, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
45 26 0.12
46 14 0.07
47 1 0.00
48 125 0.60
49 4 0.02
50 39 0.19
51 1 0.00
ACGTcount: A:0.36, C:0.08, G:0.27, T:0.30
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:81955685 original size:98 final size:97
Alignment explanation
Indices: 81955476--81955747 Score: 383
Period size: 98 Copynumber: 2.8 Consensus size: 97
81955466 AACATGATAT
* * * *
81955476 ATGTGATAAGGCCGAATGGCTAATGTG-AATACGTATGAGATAT-ATATGTAGTAAAGCCGAATG
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGATATGTGGTAAAGCCGAATG
* * *
81955539 GCTAATGTG-AA-GTATGTATGAGATATGCAT
66 GCTAATGTGAAATATATATATGAGATATGCAA
81955569 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG-ATATGTGGTAAAGCCGAAT
*
81955634 GG-TCAATGTGAAATATATATATGAGATATGTAA
65 GGCT-AATGTGAAATATATATATGAGATATGCAA
* *
81955667 ATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG-ATATGTGGTAAAGCCGAAT
*
81955732 GGCTAGTGTGAAATAT
65 GGCTAATGTGAAATAT
81955748 GTAGGCGATG
Statistics
Matches: 160, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
93 25 0.16
94 15 0.09
95 1 0.01
96 26 0.16
97 2 0.01
98 90 0.56
99 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.27, T:0.29
Consensus pattern (97 bp):
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGATATGTGGTAAAGCCGAATG
GCTAATGTGAAATATATATATGAGATATGCAA
Found at i:81955985 original size:36 final size:37
Alignment explanation
Indices: 81955896--81956004 Score: 166
Period size: 37 Copynumber: 3.0 Consensus size: 37
81955886 TGGAAATATA
* *
81955896 TTCCGGGTAAGACCCGATGACTACGTGCGGAGATTAT
1 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
*
81955933 GTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
1 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
* *
81955970 TTCC-GGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
81956005 ATCTGAGCTA
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
36 29 0.44
37 37 0.56
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (37 bp):
TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
Found at i:81966458 original size:49 final size:47
Alignment explanation
Indices: 81966374--81966972 Score: 1011
Period size: 47 Copynumber: 12.6 Consensus size: 47
81966364 TATTTGAATA
81966374 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
81966421 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
81966470 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
81966517 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
81966566 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
81966615 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
81966662 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
81966711 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
81966758 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
81966805 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
81966852 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
81966899 AATGTGAAAGTGTATATATGTGA-AAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAA-GGCCTAATGGCCGATGTGATG
* *
81966946 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
81966973 TCCCGAAGGG
Statistics
Matches: 528, Mismatches: 16, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
46 2 0.00
47 338 0.64
48 2 0.00
49 186 0.35
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:81966482 original size:96 final size:94
Alignment explanation
Indices: 81966374--81966972 Score: 1011
Period size: 96 Copynumber: 6.3 Consensus size: 94
81966364 TATTTGAATA
81966374 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
81966439 TATGTGATAAGGCCGAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCGATGTGATG
81966470 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
81966535 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCGATGTGATG
*
81966566 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTACA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
81966631 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCGATGTGATG
81966662 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
81966727 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCGATGTGATG
81966758 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
81966823 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCGAATGGCCGATGTGATG
81966852 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
81966917 TGTGA-AAGGGCCGAGTGGCCAACGTGATG
66 TGTGATAA-GGCCGAATGGCCGATGTGATG
* *
81966946 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
81966973 TCCCGAAGGG
Statistics
Matches: 485, Mismatches: 15, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
93 2 0.00
94 193 0.40
96 243 0.50
98 47 0.10
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCGATGTGATG
Found at i:81968387 original size:45 final size:46
Alignment explanation
Indices: 81968313--81968417 Score: 144
Period size: 45 Copynumber: 2.3 Consensus size: 46
81968303 AGTTTGCAAT
* * *
81968313 GAGCAGATTGAAGA-AGCAAATTTGGCGTCTCTGTATTAGACG-GG
1 GAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTAGTAGACGCGG
*
81968357 GAGCAGATCGAAGATAATAAATTTGGCGTCTCTGTAGTAGACGCGG
1 GAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTAGTAGACGCGG
*
81968403 G-GCAGATCAAAGATA
1 GAGCAGATCGAAGATA
81968418 GCAGATATCG
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
44 13 0.24
45 38 0.70
46 3 0.06
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.23
Consensus pattern (46 bp):
GAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTAGTAGACGCGG
Found at i:81969875 original size:27 final size:27
Alignment explanation
Indices: 81969844--81969949 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
81969834 GCTGCCAGAG
** *
81969844 CAGATAATGTGATAGAGTCACCAGATA
1 CAGATAATGTGGCAGAGCCACCAGATA
*
81969871 CAGATAATCGTGGCAAAGCCACCAGA-A
1 CAGATAAT-GTGGCAGAGCCACCAGATA
81969898 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATA-ATGTGGCAGAGCCACCAGATA
* *
81969925 CAGATAATTCTGGCATAGCCACCAG
1 CAGATAA-TGTGGCAGAGCCACCAG
81969950 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
26 1 0.01
27 52 0.76
28 15 0.22
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGATAATGTGGCAGAGCCACCAGATA
Found at i:81969929 original size:54 final size:54
Alignment explanation
Indices: 81969838--81969949 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
81969828 AGCATGGCTG
* * *
81969838 CCAGAGCAGATAATGTGATAGAGTCACCAGATACAGATAA-TCGTGGCAAAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATTC-TGGCAAAGCCA
* *
81969892 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTCTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATTCTGGCAAAGCCA
81969946 CCAG
1 CCAG
81969950 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
54 32 0.63
55 19 0.37
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATTCTGGCAAAGCCA
Found at i:81972455 original size:38 final size:38
Alignment explanation
Indices: 81972413--81972488 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
81972403 ATAGAATAAG
*
81972413 CATTTAATGCTTAGTAAGTTCTATAACGAAAAATTAAC
1 CATTTAATGCTTAGTAAGTTATATAACGAAAAATTAAC
*
81972451 CATTTAATGCTTAGTAAGTTATATAACGGAAAATTAAC
1 CATTTAATGCTTAGTAAGTTATATAACGAAAAATTAAC
81972489 TTACCGTTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (38 bp):
CATTTAATGCTTAGTAAGTTATATAACGAAAAATTAAC
Found at i:81972863 original size:25 final size:25
Alignment explanation
Indices: 81972792--81972948 Score: 90
Period size: 24 Copynumber: 6.4 Consensus size: 25
81972782 AATTTATATT
**
81972792 CGAGAATGCTCATACGAGCACATA-AA
1 CGAGAA-GCTCATGTGAGC-CATATAA
* *
81972818 CGAGAAGCTCTTTTGAGCCATATAA
1 CGAGAAGCTCATGTGAGCCATATAA
* * * *
81972843 GGGGAAGCTCATGTGATCCATGTAA
1 CGAGAAGCTCATGTGAGCCATATAA
* *
81972868 CGAGAAGCTC-TAGAGAGTCAT-TAA
1 CGAGAAGCTCAT-GTGAGCCATATAA
* ** *
81972892 TGAGAAGCTCATACGAGCCA-ATAT
1 CGAGAAGCTCATGTGAGCCATATAA
* * * *
81972916 CGGGAAGCTCAAGCGAGCCA-ATAT
1 CGAGAAGCTCATGTGAGCCATATAA
81972940 CGAGAAGCT
1 CGAGAAGCT
81972949 TTGGAGAGCC
Statistics
Matches: 103, Mismatches: 24, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
24 52 0.50
25 45 0.44
26 6 0.06
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (25 bp):
CGAGAAGCTCATGTGAGCCATATAA
Found at i:81974404 original size:48 final size:48
Alignment explanation
Indices: 81974310--81974484 Score: 164
Period size: 47 Copynumber: 3.7 Consensus size: 48
81974300 TCATTTGTGC
* ** * * *
81974310 GCTAGTGTAAGA-CATGTCTAAGACAT-GCATCGGCCATAT-TATAAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-CATGTAGACAAGA
81974356 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT-TGAGACAAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATGT-AGACAAGA
* * * * *
81974404 GCTAGTGTAAGA-CGTGTTTGGGACATGGCATCGGCATGTATAGAGGT
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATGTAGACAAGA
* *
81974451 G-TCAGTGTAAGACCATGTCTGAGACATGGCATCG
1 GCT-AGTGTAAGACCATGTTTGGGACATGGCATCG
81974485 ACACAGATAT
Statistics
Matches: 109, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
46 14 0.13
47 52 0.48
48 43 0.39
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATGTAGACAAGA
Found at i:81982142 original size:48 final size:46
Alignment explanation
Indices: 81982083--81982212 Score: 142
Period size: 46 Copynumber: 2.8 Consensus size: 46
81982073 GCCACATTAT
*
81982083 GAGAGCCAGTGTAAGACAGTGTCTGGGACATGGCATCGACATTGAGAC
1 GAGAG-CAGTGTAAGACAGTGTCTGGGACAT-GCATCGACATCGAGAC
* * *
81982131 GAGAGCTAGTGTAA-A-ATGTGTCTGGGACATGCATCGGCCTCGAGAT
1 GAGAGC-AGTGTAAGACA-GTGTCTGGGACATGCATCGACATCGAGAC
81982177 GTA-AGGCAGTGTAAGACA-TGTCTGGGACATGCATCG
1 G-AGA-GCAGTGTAAGACAGTGTCTGGGACATGCATCG
81982213 GCTACGAGAT
Statistics
Matches: 72, Mismatches: 4, Indels: 14
0.80 0.04 0.16
Matches are distributed among these distances:
46 40 0.56
47 19 0.26
48 13 0.18
ACGTcount: A:0.28, C:0.18, G:0.33, T:0.22
Consensus pattern (46 bp):
GAGAGCAGTGTAAGACAGTGTCTGGGACATGCATCGACATCGAGAC
Found at i:81986797 original size:20 final size:20
Alignment explanation
Indices: 81986774--81986813 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
81986764 TGTCATATTT
81986774 GGCCATAAGCTAGCATAATG
1 GGCCATAAGCTAGCATAATG
81986794 GGCCATAAGCTAGCATAATG
1 GGCCATAAGCTAGCATAATG
81986814 AGACTTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (20 bp):
GGCCATAAGCTAGCATAATG
Found at i:81987913 original size:47 final size:47
Alignment explanation
Indices: 81987862--81988084 Score: 322
Period size: 47 Copynumber: 4.7 Consensus size: 47
81987852 TTAGGATTCT
* * * *
81987862 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCA
81987909 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
*
81987956 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
* * * *
81988003 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
* * *
81988050 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
81988085 TCCAGAAGGG
Statistics
Matches: 160, Mismatches: 15, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
46 1 0.01
47 159 0.99
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
Found at i:81987937 original size:25 final size:25
Alignment explanation
Indices: 81987909--81987987 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
81987899 CTAATGGCCG
81987909 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ***
81987934 ATGTGAT-AAGGCCTAA-TGGCCA-
1 ATGTGATGAATGTGAAAGTGTATAT
81987956 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
81987981 ATGTGAT
1 ATGTGAT
81987988 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:81988261 original size:37 final size:37
Alignment explanation
Indices: 81988205--81988277 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 37
81988195 GAGCTCTAAA
* *
81988205 GACCCGATGACTACATGTGG-GAATTTTGTCCGGGTAT
1 GACCCGATAACTACATGTGGAG-ATTATGTCCGGGTAT
* *
81988242 GACCCGATAACTTCGTGTGGAGATTATGTCCGGGTA
1 GACCCGATAACTACATGTGGAGATTATGTCCGGGTA
81988278 AGACTTCGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 30 0.97
38 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (37 bp):
GACCCGATAACTACATGTGGAGATTATGTCCGGGTAT
Found at i:81991589 original size:132 final size:132
Alignment explanation
Indices: 81991352--81991608 Score: 480
Period size: 132 Copynumber: 1.9 Consensus size: 132
81991342 GAGTGGCATG
81991352 TATAAGGACTAGTTTTTATATTAGATGTTGTTATGATTAGCCAAATGTATCGGCTTATATTGATC
1 TATAAGGACTAGTTTTTATATTAGATGTTGTTATGATTAGCCAAATGTATCGGCTTATATTGATC
* *
81991417 TATTGTATATAGCCATGAGATGTAGCTTATTATGGTTATGGCTTGTAAGCCTAATTATTCCTACT
66 TATTGGATATAGCCATGAGATGTAGCTTATTATGGTTATGGCTTGTAAACCTAATTATTCCTACT
81991482 AT
131 AT
81991484 TATAAGGACTAGTTTTTATATTAGATGTTGTTATGATTAGCCAAATGTATCGGCTTATATTGATC
1 TATAAGGACTAGTTTTTATATTAGATGTTGTTATGATTAGCCAAATGTATCGGCTTATATTGATC
81991549 TATTGGATATAGCCATGAGATGT-GCCTTATTATGGTTATGGCTTGTAAACCTAATTATTC
66 TATTGGATATAGCCATGAGATGTAG-CTTATTATGGTTATGGCTTGTAAACCTAATTATTC
81991609 TTGCTATGGG
Statistics
Matches: 122, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
131 1 0.01
132 121 0.99
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (132 bp):
TATAAGGACTAGTTTTTATATTAGATGTTGTTATGATTAGCCAAATGTATCGGCTTATATTGATC
TATTGGATATAGCCATGAGATGTAGCTTATTATGGTTATGGCTTGTAAACCTAATTATTCCTACT
AT
Found at i:81999163 original size:25 final size:25
Alignment explanation
Indices: 81999125--81999176 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
81999115 TTTGGCTTGA
*
81999125 CATTTACTAAGCAACATCAGATATT
1 CATTTACTAAGCAACATCAAATATT
* * *
81999150 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAACATCAAATATT
81999175 CA
1 CA
81999177 AATTATTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (25 bp):
CATTTACTAAGCAACATCAAATATT
Found at i:82006270 original size:16 final size:15
Alignment explanation
Indices: 82006249--82006278 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
82006239 GCATTGGAAC
82006249 TTTTATTTTATTTTAT
1 TTTTATTTT-TTTTAT
82006265 TTTTATTTTTTTTA
1 TTTTATTTTTTTTA
82006279 CTTAGCTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTATTTTTTTTAT
Found at i:82017385 original size:48 final size:48
Alignment explanation
Indices: 82017327--82017814 Score: 771
Period size: 48 Copynumber: 10.0 Consensus size: 48
82017317 TTGATGCATA
82017327 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
82017375 AGATATGTATATGTGGTAAAGCCGAGTGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
82017423 AGATCTGTATATGTGGTAAAGCCGAGTGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
82017471 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
82017519 AGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
82017567 AGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
82017615 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGTATG
*
82017667 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
82017715 AGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGATATATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG----A-A-ATATGTATG
* *
82017769 AGATATGTGTATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
82017815 GGCGATGTGT
Statistics
Matches: 412, Mismatches: 16, Indels: 24
0.91 0.04 0.05
Matches are distributed among these distances:
47 1 0.00
48 318 0.77
49 2 0.00
50 3 0.01
51 1 0.00
52 46 0.11
53 1 0.00
54 39 0.09
55 1 0.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:82018069 original size:37 final size:37
Alignment explanation
Indices: 82017964--82018069 Score: 167
Period size: 37 Copynumber: 2.9 Consensus size: 37
82017954 AATATATTCT
*
82017964 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* *
82018001 GGGTAAGACCTGATGACTACATGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* *
82018038 GGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTT
82018070 CATCTGAGCT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
Found at i:82019282 original size:10 final size:10
Alignment explanation
Indices: 82019267--82019292 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
82019257 GACGAACATG
82019267 TTTATGAATA
1 TTTATGAATA
82019277 TTTATGAATA
1 TTTATGAATA
82019287 TTTATG
1 TTTATG
82019293 CTATTAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.54
Consensus pattern (10 bp):
TTTATGAATA
Found at i:82021128 original size:90 final size:89
Alignment explanation
Indices: 82020996--82021314 Score: 268
Period size: 90 Copynumber: 3.6 Consensus size: 89
82020986 AAAATTACAT
* * * * * * *
82020996 GTTAATA-ATCTGTCAGATTGTTGTGAATGCATAACATATTTGCATATGAGTGCTGCCAAAATGT
1 GTTAATACA-CTGCCAGATGGTTGTGAATACACAACGTATTTGCATATAAGAGCTGCCAAAAT-T
* *
82021060 GGGTGGATGATCCACCAGTGTTGCAG
64 GGGTGGATGAACCACAAGTGTTGCAG
** * * * * *
82021086 GTTAATATGCTGCCAGGTGGTTGTGAATACGCAACGTATTTGCAGATAAGAGCTACCAAAAAATG
1 GTTAATACACTGCCAGATGGTTGTGAATACACAACGTATTTGCATATAAGAGCTGCC-AAAATTG
* * * *
82021151 GGTGGATTAACCAAAAATGTTGCAT
65 GGTGGATGAACCACAAGTGTTGCAG
* *
82021176 GTTAATACACTGCTAGATGGTTGTGAATGCACAACG-AGTTTGCATATAAGAGCTGCCAGAAAAT
1 GTTAATACACTGCCAGATGGTTGTGAATACACAACGTA-TTTGCATATAAGAGCTGCC--AAAAT
* * * *
82021240 T-TGTGGATGAACTACTAGTGTTCCAG
63 TGGGTGGATGAACCACAAGTGTTGCAG
* * * * *
82021266 GTTAATACATTTCCAGATGTTTGTGAATGCACAACG-AGTTTGCAGATAA
1 GTTAATACACTGCCAGATGGTTGTGAATACACAACGTA-TTTGCATATAA
82021315 TAGTTGCTAG
Statistics
Matches: 183, Mismatches: 42, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
89 1 0.01
90 173 0.95
91 9 0.05
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (89 bp):
GTTAATACACTGCCAGATGGTTGTGAATACACAACGTATTTGCATATAAGAGCTGCCAAAATTGG
GTGGATGAACCACAAGTGTTGCAG
Found at i:82027723 original size:44 final size:44
Alignment explanation
Indices: 82027654--82027745 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 44
82027644 CTGAAGTAAC
* *
82027654 AGTAGCAGTACGACACACATGGTGCCTCATCGACTCAAAGTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAAGTCGA
** * *
82027698 AGTAACAGTACGACACTTATAGTGCCTCATTGACTCAAGGTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAAGTCGA
82027742 AGTA
1 AGTA
82027746 TCCCTGAACA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.22
Consensus pattern (44 bp):
AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAAGTCGA
Found at i:82028561 original size:16 final size:17
Alignment explanation
Indices: 82028530--82028562 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
82028520 AATTTCTATC
82028530 CAATTTATACCCTAATT
1 CAATTTATACCCTAATT
*
82028547 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
82028563 AACTAATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.42
Consensus pattern (17 bp):
CAATTTATACCCTAATT
Found at i:82028950 original size:11 final size:11
Alignment explanation
Indices: 82028930--82028964 Score: 52
Period size: 12 Copynumber: 3.0 Consensus size: 11
82028920 AAAACCCTAG
82028930 TTTTTCCTTTTC
1 TTTTT-CTTTTC
82028942 TTTTTCTTTTC
1 TTTTTCTTTTC
82028953 TTCTTTCTTTTC
1 TT-TTTCTTTTC
82028965 CCTCTGTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 8 0.36
12 14 0.64
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:82029383 original size:18 final size:18
Alignment explanation
Indices: 82029362--82029402 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
82029352 TTTATAATTT
*
82029362 AATATCAATTAAATAATA
1 AATATCAATTAAATAACA
* *
82029380 AATATCTATTTAATAACA
1 AATATCAATTAAATAACA
82029398 AATAT
1 AATAT
82029403 ATGTATTACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (18 bp):
AATATCAATTAAATAACA
Found at i:82034118 original size:22 final size:22
Alignment explanation
Indices: 82034093--82034156 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
82034083 ATCTACAAAC
82034093 ACTGGTGGTTCATCCACAACTT
1 ACTGGTGGTTCATCCACAACTT
** * * *
82034115 ACTGGCAGTTTATCTACAAATT
1 ACTGGTGGTTCATCCACAACTT
*
82034137 ACTAGTGGTTCATCCACAAC
1 ACTGGTGGTTCATCCACAAC
82034157 CCCAGTGTGT
Statistics
Matches: 31, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (22 bp):
ACTGGTGGTTCATCCACAACTT
Found at i:82035611 original size:88 final size:88
Alignment explanation
Indices: 82035423--82035600 Score: 320
Period size: 88 Copynumber: 2.0 Consensus size: 88
82035413 ACATGCCATT
* *
82035423 GAACAAAATAAGAGTATCTATATACCAAAACTAGACAAGATGATAGTGTGTTGATTCTACAATCG
1 GAACAAAATAAGAGTATCTATATACCAAAACTAGACAAGATGATAGTGTGTTGATTCTACAACCA
82035488 TCTCCCAATCTTCACGAGTCCAC
66 TCTCCCAATCTTCACGAGTCCAC
* *
82035511 GAACAAAATAAGAGTATCTATATACCAAAGCTAGACAAGATGATAGTGTGTTGATTCTTCAACCA
1 GAACAAAATAAGAGTATCTATATACCAAAACTAGACAAGATGATAGTGTGTTGATTCTACAACCA
82035576 TCTCCCAATCTTCACGAGTCCAC
66 TCTCCCAATCTTCACGAGTCCAC
82035599 GA
1 GA
82035601 GCTCTGTAAG
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (88 bp):
GAACAAAATAAGAGTATCTATATACCAAAACTAGACAAGATGATAGTGTGTTGATTCTACAACCA
TCTCCCAATCTTCACGAGTCCAC
Found at i:82039843 original size:28 final size:28
Alignment explanation
Indices: 82039801--82040003 Score: 126
Period size: 28 Copynumber: 7.1 Consensus size: 28
82039791 ATAAGTAAGT
*
82039801 CTTTGTGGCTATCTCTATTAAAAGAAGC
1 CTTTGTGACTATCTCTATTAAAAGAAGC
* * * * *
82039829 CTTTATGACGATCTC-AGTTATAGGAATC
1 CTTTGTGACTATCTCTA-TTAAAAGAAGC
* * * *
82039857 ATTTGTGGCAATATCTATTAAATA-AAGC
1 CTTTGTGACTATCTCTATTAAA-AGAAGC
* * *
82039885 CTTTGTGGCTATCTCTGTTAAAGGAAGC
1 CTTTGTGACTATCTCTATTAAAAGAAGC
*
82039913 CTTTGTGACTATCTCTGTTAAAAGGAAGC
1 CTTTGTGACTATCTCTATTAAAA-GAAGC
* * *
82039942 CTCTGTG-GTGATCTCTGTTAAAAAGGAAGC
1 CTTTGTGACT-ATCTCTATT-AAAA-GAAGC
* * *
82039972 CCTTGTTACAATCTCT-TTCAAAAGAATGC
1 CTTTGTGACTATCTCTATT-AAAAGAA-GC
82040001 CTT
1 CTT
82040004 CGTAGTGTAA
Statistics
Matches: 136, Mismatches: 30, Indels: 17
0.74 0.16 0.09
Matches are distributed among these distances:
27 1 0.01
28 84 0.62
29 31 0.23
30 20 0.15
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.35
Consensus pattern (28 bp):
CTTTGTGACTATCTCTATTAAAAGAAGC
Found at i:82039876 original size:56 final size:56
Alignment explanation
Indices: 82039802--82039943 Score: 160
Period size: 56 Copynumber: 2.5 Consensus size: 56
82039792 TAAGTAAGTC
* *
82039802 TTTGTGGCTATCTCTATTAAAAGAAGCCTTTATGACGATCTCAGTTATAGGAATCA
1 TTTGTGGCTATCTCTATTAAAAGAAGCCTTTATGACGATCTCAGTTAAAGGAAGCA
* * * * * * *
82039858 TTTGTGGCAATATCTATTAAATA-AAGCCTTTGTGGCTATCTCTGTTAAAGGAAGCC
1 TTTGTGGCTATCTCTATTAAA-AGAAGCCTTTATGACGATCTCAGTTAAAGGAAGCA
* *
82039914 TTTGTGACTATCTCTGTTAAAAGGAAGCCT
1 TTTGTGGCTATCTCTATTAAAA-GAAGCCT
82039944 CTGTGGTGAT
Statistics
Matches: 70, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
55 1 0.01
56 62 0.89
57 7 0.10
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (56 bp):
TTTGTGGCTATCTCTATTAAAAGAAGCCTTTATGACGATCTCAGTTAAAGGAAGCA
Found at i:82039948 original size:29 final size:28
Alignment explanation
Indices: 82039801--82039977 Score: 130
Period size: 28 Copynumber: 6.2 Consensus size: 28
82039791 ATAAGTAAGT
*
82039801 CTTTGTGGCTATCTCTATTAAAA-GAAGC
1 CTTTGT-GCTATCTCTGTTAAAAGGAAGC
* * * * *
82039829 CTTTATGACGATCTCAGTT-ATAGGAATC
1 CTTTGTG-CTATCTCTGTTAAAAGGAAGC
* * * *
82039857 ATTTGTGGCAATATCTATTAAATA--AAGC
1 CTTTGT-GCTATCTCTGTTAAA-AGGAAGC
82039885 CTTTGTGGCTATCTCTGTT-AAAGGAAGC
1 CTTTGT-GCTATCTCTGTTAAAAGGAAGC
82039913 CTTTGTGACTATCTCTGTTAAAAGGAAGC
1 CTTTGTG-CTATCTCTGTTAAAAGGAAGC
* *
82039942 CTCTGTGGTGATCTCTGTTAAAAAGGAAGC
1 CTTTGTGCT-ATCTCTGTT-AAAAGGAAGC
*
82039972 CCTTGT
1 CTTTGT
82039978 TACAATCTCT
Statistics
Matches: 116, Mismatches: 22, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
26 1 0.01
27 6 0.05
28 68 0.59
29 26 0.22
30 15 0.13
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (28 bp):
CTTTGTGCTATCTCTGTTAAAAGGAAGC
Found at i:82039986 original size:30 final size:29
Alignment explanation
Indices: 82039895--82039995 Score: 93
Period size: 29 Copynumber: 3.5 Consensus size: 29
82039885 CTTTGTGGCT
* * *
82039895 ATCTCTGTT-AAAGGAAGCCTTTGTGACT
1 ATCTCTGTTAAAAGGAAGCCCTTGTTACA
* *
82039923 ATCTCTGTTAAAAGGAAGCCTCTGTGGT--G
1 ATCTCTGTTAAAAGGAAGCC-CT-TGTTACA
82039952 ATCTCTGTTAAAAAGGAAGCCCTTGTTACA
1 ATCTCTGTT-AAAAGGAAGCCCTTGTTACA
82039982 ATCTCT-TTCAAAAG
1 ATCTCTGTT-AAAAG
82039996 AATGCCTTCG
Statistics
Matches: 60, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
28 12 0.20
29 28 0.47
30 18 0.30
31 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (29 bp):
ATCTCTGTTAAAAGGAAGCCCTTGTTACA
Found at i:82046183 original size:26 final size:26
Alignment explanation
Indices: 82046152--82046259 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82046142 TGAAATGCCC
*
82046152 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
82046178 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
82046204 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
82046230 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82046256 ATCA
1 ATCA
82046260 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82048566 original size:21 final size:20
Alignment explanation
Indices: 82048520--82048569 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
82048510 TCAACACAGG
* *
82048520 TGCTTGTCAAAACTTTCTTC
1 TGCTTCTCAAAACTTTCTGC
**
82048540 AACTTCTCAAAAGCTTTCTGC
1 TGCTTCTCAAAA-CTTTCTGC
82048561 TGCTTCTCA
1 TGCTTCTCA
82048570 GTCCATACAA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.22, C:0.28, G:0.10, T:0.40
Consensus pattern (20 bp):
TGCTTCTCAAAACTTTCTGC
Found at i:82051826 original size:26 final size:28
Alignment explanation
Indices: 82051766--82051887 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
82051756 TAATTAAGTC
* *
82051766 CGCACACTCAGTGCTATATAATCACACT
1 CGCACACTTAGTGCTATATAATCAAACT
82051794 CGCACACTTAGTGCTATAT-ATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
82051821 CG-ACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
82051848 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
82051877 CGCACACTTAG
1 CGCACACTTAG
82051888 CGCCAATCTC
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
26 16 0.19
27 19 0.22
28 34 0.40
29 16 0.19
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:82052925 original size:71 final size:72
Alignment explanation
Indices: 82052828--82053411 Score: 270
Period size: 71 Copynumber: 7.5 Consensus size: 72
82052818 TGTGAACCCA
* *
82052828 AGGCTCAATTCACATCTCGCAATATGAGTTGATTTTTGAAAAACA-AAATTTAAAATACCTCAGC
1 AGGCTCAACTCAC-TCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGC
82052892 GTGTCCTG
65 GTGTCCTG
* * *
82052900 AGGCTCAACTCACTCTCGCAATATGAGTTGATTTTTTTTTTAACAACAGAAATTGAAATTACCTC
1 AGGCTCAACTCACTCTCGCAATATGAGTTGA----TTTTTGAAAAACAGAAATTGAAAATACCTC
82052965 AGCGTGTCCTG
62 AGCGTGTCCTG
* * * ** * *
82052976 ATGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAGAACAGAAA
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTG-A-AA-A-TAC
* * * *
82053041 TTGAAAAAGACCTCAG-CATG
59 CT----CAG-CGT--GTCCTG
* * * *
82053061 TGAGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAAACAGAAATTGAAAT
1 AG-GCTC-A-ACTCA------CTCTCGCAATATGAGTTGATTTTTGA-AAAACAGAAATTGAAAA
*
82053125 TACCTCAGCGTGTCCCG
56 TACCTCAGCGTGTCCTG
* ** **
82053142 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTG-AAAACAGAAATTG-AAA-ACCAGAAA
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGC
* *
82053204 TTGAAAATACCTC
65 GTG----T-CCTG
* * * ** *
82053217 AGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATTGAACATAAATT
1 AG-G-CT----CAA--CTC-ACTC---TC--GCAATATGAGTTGATTTTTGA-AAAACAGAAATT
*
82053282 -AAAACCACCTCAGCGTGTCCTG
51 GAAAA-TACCTCAGCGTGTCCTG
* *
82053304 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACAAAAATTGAAAATTACCTCAG
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAA-TACCTCAG
*
82053368 C--GTCTTG
64 CGTGTCCTG
82053375 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 AGGCTCAACTCAC-TCTCGCAATATGAGTTGATTTTT
82053412 TTTGAAACAT
Statistics
Matches: 390, Mismatches: 66, Indels: 112
0.69 0.12 0.20
Matches are distributed among these distances:
70 7 0.02
71 55 0.14
72 38 0.10
73 18 0.05
74 37 0.09
75 35 0.09
76 40 0.10
77 21 0.05
78 1 0.00
79 12 0.03
80 4 0.01
81 10 0.03
82 2 0.01
83 10 0.03
84 3 0.01
85 5 0.01
86 7 0.02
87 11 0.03
88 18 0.05
89 2 0.01
90 19 0.05
91 11 0.03
92 24 0.06
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (72 bp):
AGGCTCAACTCACTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAGCG
TGTCCTG
Found at i:82052971 original size:76 final size:74
Alignment explanation
Indices: 82052828--82053031 Score: 272
Period size: 76 Copynumber: 2.7 Consensus size: 74
82052818 TGTGAACCCA
* * * *
82052828 AGGCTCAATTCACATCTCGCAATATGAGTTGA--TTTTTGAAAAACA-AAATTTAAAATACCTCA
1 AGGCTCAACTCAC-TCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAAATACCTCA
82052890 GCGTGTCCTG
65 GCGTGTCCTG
*
82052900 AGGCTCAACTCACTCTCGCAATATGAGTTGATTTTTTTTTTAACAACAGAAATTGAAATTACCTC
1 AGGCTCAACTCACTCTCGCAATATGAGTTGA--TTTTTTTTAACAACAGAAATTGAAAATACCTC
82052965 AGCGTGTCCTG
64 AGCGTGTCCTG
* *
82052976 ATGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTT-ACGAACAGAAATTGAA
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTTTTAAC-AACAGAAATTGAA
82053032 GAACAGAAAT
Statistics
Matches: 118, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
71 18 0.15
72 12 0.10
74 2 0.02
75 32 0.27
76 36 0.31
77 18 0.15
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (74 bp):
AGGCTCAACTCACTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAAATACCTCAG
CGTGTCCTG
Found at i:82053037 original size:14 final size:14
Alignment explanation
Indices: 82053018--82053045 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
82053008 TTTTTTTTAC
82053018 GAACAGAAATTGAA
1 GAACAGAAATTGAA
82053032 GAACAGAAATTGAA
1 GAACAGAAATTGAA
82053046 AAAGACCTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:82053157 original size:74 final size:73
Alignment explanation
Indices: 82053027--82053196 Score: 234
Period size: 74 Copynumber: 2.3 Consensus size: 73
82053017 CGAACAGAAA
*
82053027 TTGAAGAACAGAAATTGAAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATA
1 TTGAA-AACAGAAATTG-AAAAGACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATA
*
82053092 TGAGTTAATTT
63 TGAGTCAATTT
** *
82053103 TTGACAAAACAGAAATTGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTG--AAAACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
*
82053167 GAGTCGATTT
64 GAGTCAATTT
82053177 TTGAAAACAGAAATTGAAAA
1 TTGAAAACAGAAATTGAAAA
82053197 CCAGAAATTG
Statistics
Matches: 85, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
72 16 0.19
74 42 0.49
76 14 0.16
77 11 0.13
78 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.24
Consensus pattern (73 bp):
TTGAAAACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
GTCAATTT
Found at i:82053195 original size:13 final size:14
Alignment explanation
Indices: 82053177--82053210 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
82053167 GAGTCGATTT
82053177 TTGAAAA-CAGAAA
1 TTGAAAACCAGAAA
82053190 TTGAAAACCAGAAA
1 TTGAAAACCAGAAA
82053204 TTGAAAA
1 TTGAAAA
82053211 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.18
Consensus pattern (14 bp):
TTGAAAACCAGAAA
Found at i:82053265 original size:88 final size:85
Alignment explanation
Indices: 82053108--82053268 Score: 234
Period size: 88 Copynumber: 1.9 Consensus size: 85
82053098 AATTTTTGAC
* * *
82053108 AAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTCA
82053173 ATTTTTGAAAACAGAAATTG
66 ATTTTTGAAAACAGAAATTG
* *
82053193 AAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAG
1 AAAA-CAGAAATTGAAAATACCTCAGCGTGT--CCCAAGGCTCAACTCACCTCTCGCAATATGAG
82053258 -CTAATTTTTGA
63 TC-AATTTTTGA
82053269 TTGAACATAA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
85 4 0.06
86 25 0.37
87 1 0.01
88 37 0.55
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.25
Consensus pattern (85 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTCA
ATTTTTGAAAACAGAAATTG
Found at i:82053297 original size:162 final size:162
Alignment explanation
Indices: 82052867--82053358 Score: 647
Period size: 162 Copynumber: 3.0 Consensus size: 162
82052857 TGATTTTTGA
*
82052867 AAAACA-AAATTTAAAATACCTCAGCGTGT---CCTGAGGCTCAACTCA-CTCTCGCAATATGAG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAG
* ** *
82052927 TTGATTTTTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGATGCTCAACTCACCTC
65 TT-AATTTTTGATT-A-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* * *
82052992 TAGCAATATGAGTTGATTTTTTTTACGAACAGAAATTG
127 TCGCAATATGAGTTGA--TTTTTGACAAACAGAAATTG
* *
82053030 AAGAACAGAAATTGAAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
1 AA-AACAGAAATTG-AAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGA
** *
82053095 GTTAATTTTTGACAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
64 GTTAATTTTTGATTAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
*
82053160 GCAATATGAGTCGATTTTTGA-AAACAGAAATTG
129 GCAATATGAGTTGATTTTTGACAAACAGAAATTG
* *
82053193 AAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAG
1 AAAA-CAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * **
82053258 CTAATTTTTGATTGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
65 TTAATTTTTGATTAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
*
82053323 CAATATGAGTTGA-TTTTGACAAACAAAAATTG
130 CAATATGAGTTGATTTTTGACAAACAGAAATTG
82053355 AAAA
1 AAAA
82053359 TTACCTCAGC
Statistics
Matches: 291, Mismatches: 29, Indels: 19
0.86 0.09 0.06
Matches are distributed among these distances:
161 6 0.02
162 132 0.45
163 24 0.08
164 10 0.03
165 5 0.02
166 75 0.26
167 1 0.00
168 19 0.07
169 19 0.07
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (162 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TAATTTTTGATTAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTGACAAACAGAAATTG
Found at i:82053590 original size:160 final size:158
Alignment explanation
Indices: 82053277--82053576 Score: 419
Period size: 160 Copynumber: 1.9 Consensus size: 158
82053267 GATTGAACAT
* **
82053277 AAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTAAAAACACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTGA
* ** * *
82053342 CAAACAAAAATTGAAAATTACCTCAGCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA
66 AAAACAAAAATTGAAAATTACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
*
82053407 TTTTTTTTGAAACATAAATTAAAAAAACGA
131 --TATTTTGAAACATAAATTAAAAAAACGA
*
82053437 AAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-A
1 AAATTAAAAACACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTGA
*
82053501 AAACACAAAAAATTGAAAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAG
66 AAA-AC-AAAAATTGAAAATTACCTCAGCGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAG
82053565 CT-A-ATTTTGAAA
127 CTGATATTTTGAAA
82053577 AGTAGAAATT
Statistics
Matches: 125, Mismatches: 11, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
158 8 0.06
159 3 0.02
160 72 0.58
161 13 0.10
162 29 0.23
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.27
Consensus pattern (158 bp):
AAATTAAAAACACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTGA
AAAACAAAAATTGAAAATTACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
TATTTTGAAACATAAATTAAAAAAACGA
Found at i:82053965 original size:149 final size:148
Alignment explanation
Indices: 82053756--82054077 Score: 402
Period size: 149 Copynumber: 2.1 Consensus size: 148
82053746 TTGATTTTTT
*
82053756 TTTTAAAAACAGAAATTGAAAATACCTCAGCATGTGGAACCGAGGCTCAACTCACCTCTCGCAAT
1 TTTTGAAAACAGAAATTGAAAATACCTCAGCATGT---ACCGAGGCTCAACTCACCTCTCGCAAT
* *
82053821 ATAAGTTGATTTTTTTTTGAA-AACGAAAATTGAGAA-TACCTCAACGTGTCTTGAGGCTCAACA
63 ATAAGTTGATTTTTTTTTAAACAAC-AAAATTGA-AATTACCTCAACGTGTCCTGAGGCTCAAC-
** *
82053884 TCATTTCTCGCAAT-TAAGTTGAA
125 TCACCTCTAGCAATATAAGTTGAA
**
82053907 TTTTGAAAACAGAAATTGAAAATTACCTCAGCATGT-CCTGAGGCTCAACTCATTTCTCGCAATA
1 TTTTGAAAACAGAAATTGAAAA-TACCTCAGCATGTACC-GAGGCTCAACTCACCTCTCGCAATA
* * *
82053971 TGAGTTGATTTTTTTTTAAACAACAGAATTGAAATTTACCTCAGCGTGTCCTGAGGCTCAACTCA
64 TAAGTTGATTTTTTTTTAAACAACAAAATTGAAA-TTACCTCAACGTGTCCTGAGGCTCAACTCA
* *
82054036 CCTCTAGCAATATGAGTTGAT
128 CCTCTAGCAATATAAGTTGAA
*
82054057 TTTTGAAAACAAAAATT-AAAA
1 TTTTGAAAACAGAAATTGAAAA
82054078 GGCTTAACTC
Statistics
Matches: 151, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
148 4 0.03
149 63 0.42
150 50 0.33
151 21 0.14
152 13 0.09
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (148 bp):
TTTTGAAAACAGAAATTGAAAATACCTCAGCATGTACCGAGGCTCAACTCACCTCTCGCAATATA
AGTTGATTTTTTTTTAAACAACAAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCT
CTAGCAATATAAGTTGAA
Found at i:82054021 original size:77 final size:76
Alignment explanation
Indices: 82053723--82054060 Score: 370
Period size: 77 Copynumber: 4.4 Consensus size: 76
82053713 TCTGAAGCAA
*
82053723 AACTCACCTCTCAGCAATATGAGTTGATTTTTTTTTTAAAAACAGAAATTGAAAATACCTCAGCA
1 AACTCACCTCTC-GCAATATGAGTTGA-TTTTTTTTTAAAAACAGAAATTGAAATTACCTCAGC-
*
82053788 TGTGGAACC-GAGGCTC
63 -GT-G-TCCTGAGGCTC
* * *
82053804 AACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAAC-GAAAATTGAGAA-TACCTCAACG
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAG-AAATTGA-AATTACCTCAGCG
*
82053867 TGTCTTGAGGCTC
64 TGTCCTGAGGCTC
** * * * *
82053880 AACATCATTTCTCGCAAT-TAAGTTGA----ATTTTGAAAACAGAAATTGAAAATTACCTCAGCA
1 AAC-TCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTG-AAATTACCTCAGCG
82053940 TGTCCTGAGGCTC
64 TGTCCTGAGGCTC
**
82053953 AACTCATTTCTCGCAATATGAGTTGATTTTTTTTTAAACAACAG-AATTGAAATTTACCTCAGCG
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAA-AACAGAAATTGAAA-TTACCTCAGCG
82054017 TGTCCTGAGGCTC
64 TGTCCTGAGGCTC
*
82054030 AACTCACCTCTAGCAATATGAGTTGATTTTT
1 AACTCACCTCTCGCAATATGAGTTGATTTTT
82054061 GAAAACAAAA
Statistics
Matches: 225, Mismatches: 18, Indels: 32
0.82 0.07 0.12
Matches are distributed among these distances:
72 32 0.14
73 32 0.14
75 1 0.00
76 22 0.10
77 76 0.34
78 6 0.03
79 29 0.13
80 15 0.07
81 12 0.05
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (76 bp):
AACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAATTACCTCAGCGTG
TCCTGAGGCTC
Found at i:82054195 original size:67 final size:69
Alignment explanation
Indices: 82054077--82054247 Score: 183
Period size: 67 Copynumber: 2.5 Consensus size: 69
82054067 AAAAATTAAA
* ** * **
82054077 AGGCTTAACTCAC-ACTCGCAATATGAGTCAATTTAAAACAATAAACTAAAAATA-CTC-GTGTG
1 AGGCTTAACTCACTTCTCGCAATATGAGTTGATTTAAAACAAAAAACTAAAAATACCTCAACGTG
82054139 TCCCG
66 T-CCG
*
82054144 AGGCTTAACTCACTTCTCGC-ATATGAGTTGATTTAAAA-AAAAAATTAAAAAATACCTCAACGT
1 AGGCTTAACTCACTTCTCGCAATATGAGTTGATTTAAAACAAAAAACT-AAAAATACCTCAACGT
*
82054207 GTCTG
65 GTCCG
*
82054212 AGGCTCAACTCA-TCTCTCGCAATAATGAGTTGATTT
1 AGGCTTAACTCACT-TCTCGCAAT-ATGAGTTGATTT
82054248 CTCCTTGGAA
Statistics
Matches: 88, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
66 6 0.07
67 37 0.42
68 27 0.31
69 6 0.07
70 12 0.14
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (69 bp):
AGGCTTAACTCACTTCTCGCAATATGAGTTGATTTAAAACAAAAAACTAAAAATACCTCAACGTG
TCCG
Found at i:82062440 original size:28 final size:28
Alignment explanation
Indices: 82062377--82062499 Score: 185
Period size: 28 Copynumber: 4.4 Consensus size: 28
82062367 ATATTAAGTC
*
82062377 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
82062404 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
82062432 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
82062460 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
82062489 CGCACACTTAG
1 CGCACACTTAG
82062500 CGCCAATCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.25
28 51 0.57
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:82081630 original size:30 final size:30
Alignment explanation
Indices: 82081596--82081655 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
82081586 TTGAATACAA
82081596 AGCAAAGAATAAAAATTAAAGCGTTTCTTC
1 AGCAAAGAATAAAAATTAAAGCGTTTCTTC
* *
82081626 AGCAAAGAATAACAATTAAAGTGTTTCTTC
1 AGCAAAGAATAAAAATTAAAGCGTTTCTTC
82081656 TTTGGAATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.28
Consensus pattern (30 bp):
AGCAAAGAATAAAAATTAAAGCGTTTCTTC
Found at i:82083075 original size:18 final size:19
Alignment explanation
Indices: 82083034--82083076 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
82083024 ACAATACAAC
* *
82083034 TATGACATTAATCAATGAT
1 TATGACAATAATCAATAAT
*
82083053 GATGACAAT-ATCAATAAT
1 TATGACAATAATCAATAAT
82083071 TATGAC
1 TATGAC
82083077 GTGATTAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.33
Consensus pattern (19 bp):
TATGACAATAATCAATAAT
Found at i:82083239 original size:21 final size:21
Alignment explanation
Indices: 82083214--82083255 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
82083204 AAATTTTAAA
* *
82083214 AAATAAATGGAGGGCTAAATT
1 AAATAAATGAAGGACTAAATT
*
82083235 AAATAGATGAAGGACTAAATT
1 AAATAAATGAAGGACTAAATT
82083256 GAGATTTAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.05, G:0.21, T:0.24
Consensus pattern (21 bp):
AAATAAATGAAGGACTAAATT
Found at i:82094515 original size:43 final size:44
Alignment explanation
Indices: 82094425--82094546 Score: 156
Period size: 43 Copynumber: 2.8 Consensus size: 44
82094415 GCAAAAATTT
* * *
82094425 GATGCATTGGAAGAATCTTGAAACAAACTTTGTAATTTAAATGA
1 GATGCATTGGAACAAACTTGGAACAAACTTTGTAATTTAAATGA
* * *
82094469 GATGCATTGTACCAAACTTGGAACAAA-TTTGTAATTTAAATTA
1 GATGCATTGGAACAAACTTGGAACAAACTTTGTAATTTAAATGA
* * *
82094512 GATGCATTGGAATAAACTTTGAACAAACTCTGTAA
1 GATGCATTGGAACAAACTTGGAACAAACTTTGTAA
82094547 AATATATATC
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
43 38 0.58
44 28 0.42
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.32
Consensus pattern (44 bp):
GATGCATTGGAACAAACTTGGAACAAACTTTGTAATTTAAATGA
Found at i:82098295 original size:9 final size:8
Alignment explanation
Indices: 82098281--82098311 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
82098271 TTATTTAATT
82098281 TTAAAAAA
1 TTAAAAAA
82098289 TTAAAAAA
1 TTAAAAAA
82098297 TTAAAAAA
1 TTAAAAAA
82098305 TATAAAA
1 T-TAAAA
82098312 TTTATTTGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.77
9 5 0.23
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
TTAAAAAA
Found at i:82099281 original size:30 final size:30
Alignment explanation
Indices: 82099245--82099418 Score: 278
Period size: 30 Copynumber: 5.8 Consensus size: 30
82099235 ACTTTTCTCA
*
82099245 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
82099275 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
82099305 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
82099335 ACTAGCCACACC-TTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* * *
82099364 ACTAGCCACTCTTTTTCCACCACTAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
82099394 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
82099419 CTTGTACCTA
Statistics
Matches: 131, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
29 27 0.21
30 104 0.79
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:82099360 original size:59 final size:59
Alignment explanation
Indices: 82099245--82099418 Score: 312
Period size: 59 Copynumber: 2.9 Consensus size: 59
82099235 ACTTTTCTCA
*
82099245 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACC-TTTCCACCACCAACTCC
82099305 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTCCACCACCAACTCC
*
82099364 ACTAGCCACTCTTTTTCCACCACTAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTT-TCCACCACCA
82099419 CTTGTACCTA
Statistics
Matches: 111, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
59 60 0.54
60 51 0.46
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.22
Consensus pattern (59 bp):
ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTCCACCACCAACTCC
Found at i:82099397 original size:89 final size:90
Alignment explanation
Indices: 82099245--82099418 Score: 278
Period size: 89 Copynumber: 1.9 Consensus size: 90
82099235 ACTTTTCTCA
*
82099245 ACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
1 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
* * *
82099310 CCACTCTTTTTCCACCACCAACTCC
66 CCACACCTTCTCCACCACCAACTCC
* * *
82099335 ACTAGCCACACC-TTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACTAACTCCACTAG
1 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
82099399 CCACACCTTCTCCACCACCA
66 CCACACCTTCTCCACCACCA
82099419 CTTGTACCTA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
89 66 0.86
90 11 0.14
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.22
Consensus pattern (90 bp):
ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
CCACACCTTCTCCACCACCAACTCC
Found at i:82100017 original size:25 final size:25
Alignment explanation
Indices: 82099989--82100047 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
82099979 ATATTACGTA
* *
82099989 TATATATATTTTATACTATTTTATT
1 TATATATATTTAATACTATATTATT
* *
82100014 TATATATCTTTAATATTATATTATT
1 TATATATATTTAATACTATATTATT
82100039 TATATATAT
1 TATATATAT
82100048 ATTTTTCTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATT
Found at i:82100094 original size:22 final size:24
Alignment explanation
Indices: 82100066--82100124 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
82100056 ACATGTTATC
82100066 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
82100088 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
82100113 TTATGTACATAT
1 TTATGTATATAT
82100125 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:82100114 original size:25 final size:25
Alignment explanation
Indices: 82100082--82100130 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
82100072 ATATATCTTA
**
82100082 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
82100107 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
82100131 TATTATCGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:82100135 original size:20 final size:19
Alignment explanation
Indices: 82100109--82100164 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 19
82100099 TTTTTAACAC
82100109 TATATTATGTACATATTTT
1 TATATTATGTACATATTTT
**
82100128 TAATATTATCGTATTTATTTT
1 T-ATATTAT-GTACATATTTT
82100149 TATA-TATGTACATATT
1 TATATTATGTACATATT
82100165 GATGTAGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
18 7 0.23
19 4 0.13
20 10 0.32
21 10 0.32
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.57
Consensus pattern (19 bp):
TATATTATGTACATATTTT
Found at i:82100164 original size:22 final size:21
Alignment explanation
Indices: 82100122--82100164 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
82100112 ATTATGTACA
*
82100122 TATTTTTAATATTATCGTATT
1 TATTTTTAATATTATCATATT
82100143 TATTTTTATATATGTA-CATATT
1 TATTTTTA-ATAT-TATCATATT
82100165 GATGTAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 8 0.42
22 9 0.47
23 2 0.11
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (21 bp):
TATTTTTAATATTATCATATT
Found at i:82100299 original size:16 final size:15
Alignment explanation
Indices: 82100275--82100322 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
82100265 TAATTATTAT
*
82100275 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
82100291 TATTTTAATATTTTA
1 TATTTTAATATTTTA
82100306 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
82100322 T
1 T
82100323 TATTCCATCA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:82100310 original size:7 final size:8
Alignment explanation
Indices: 82100275--82100326 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
82100265 TAATTATTAT
*
82100275 TATTCTAA
1 TATTTTAA
*
82100283 TATTTTGA
1 TATTTTAA
82100291 TATTTTAA
1 TATTTTAA
82100299 TATTTT-A
1 TATTTTAA
82100306 TATTTTATA
1 TATTTTA-A
*
82100315 TATTTTAT
1 TATTTTAA
82100323 TATT
1 TATT
82100327 CCATCATTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:82108945 original size:76 final size:73
Alignment explanation
Indices: 82108819--82109155 Score: 435
Period size: 76 Copynumber: 4.5 Consensus size: 73
82108809 TTTGTTTTTC
*
82108819 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
82108884 ATTGTTAAAAA
66 GTT-TT--AAA
**
82108895 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
82108960 GTTTT-CA
66 GTTTTAAA
* * * ** * * *
82108967 AAATTCAACTTATATTGCAAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
82109032 GTTTTCAAA
66 GTTTT-AAA
* * *
82109041 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
82109105 TCTGTTTTTAAA
63 TCTG-TTTTAAA
*
82109117 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
82109156 ATTACACACT
Statistics
Matches: 233, Mismatches: 21, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
72 65 0.28
73 1 0.00
74 34 0.15
75 2 0.01
76 126 0.54
77 5 0.02
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (73 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAA
Found at i:82109091 original size:148 final size:148
Alignment explanation
Indices: 82108805--82109156 Score: 462
Period size: 148 Copynumber: 2.4 Consensus size: 148
82108795 TAAGCCTTTT
*
82108805 AATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGG
1 AATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGG
82108870 TAATTTCAATTTCTATTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
66 TAATTTCAATTTCTATTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
82108935 ACACGCTGAGGTAATTTC
131 ACACGCTGAGGTAATTTC
* * ** *
82108953 AATTTCTG-TTTTCAAAATTCAACTTATATTGCAAGAAATGAGTTGAGCCTCA-AGACACGTTGA
1 AATTTCTGTTTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-ACACGCTGA
* * * * **
82109016 GGTATTTTCAATTTCTGTT-TT-CAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-
64 GGTAATTTCAATTTCTATTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* *
82109078 GGTTCACATGCTGAGGTATTTTC
129 GG---ACACGCTGAGGTAATTTC
* *
82109101 AATTTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
1 AATTTCTGTTTTT--CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA
82109157 TTACACACTG
Statistics
Matches: 175, Mismatches: 20, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
145 2 0.01
146 37 0.21
147 12 0.07
148 86 0.49
149 4 0.02
150 29 0.17
151 5 0.03
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (148 bp):
AATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGG
TAATTTCAATTTCTATTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG
ACACGCTGAGGTAATTTC
Found at i:82109425 original size:72 final size:73
Alignment explanation
Indices: 82109303--82109449 Score: 233
Period size: 72 Copynumber: 2.0 Consensus size: 73
82109293 TTTTTCAAAA
* * * *
82109303 TTCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTG-T
1 TTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTT
82109367 GTTTTAAT
66 GTTTTAAT
*
82109375 TTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTT
1 TTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTT
*
82109440 TTTTTAAT
66 GTTTTAAT
82109448 TT
1 TT
82109450 ATGTTTCAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
72 58 0.85
73 10 0.15
ACGTcount: A:0.22, C:0.16, G:0.24, T:0.39
Consensus pattern (73 bp):
TTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTT
GTTTTAAT
Found at i:82109565 original size:69 final size:68
Alignment explanation
Indices: 82109461--82109671 Score: 293
Period size: 71 Copynumber: 3.0 Consensus size: 68
82109451 TGTTTCAAAA
*
82109461 AAAATCAACTCATATTGCGA-A-GTGAGTTGAGCCTCAAGACGCTGAGGTAATTTCAATTTTGTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCTGAGGTAATTTCAATTTTGTT
82109524 TGTC
66 T-TC
82109528 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT-AATTTTG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--ACACGCTGAGGTAATTTCAATTTTG
*
82109592 TTATC
64 TTTTC
* *
82109597 AAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTGGCTCACACGCTGAGGTATTTTCAATT
1 -AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCT--C-AACACGCTGAGGTAATTTCAATT
82109662 TTGTTTTC
61 TTGTTTTC
82109670 AA
1 AA
82109672 TTTCTGTTTT
Statistics
Matches: 129, Mismatches: 5, Indels: 15
0.87 0.03 0.10
Matches are distributed among these distances:
67 20 0.16
68 1 0.01
69 17 0.13
70 13 0.10
71 48 0.37
72 18 0.14
73 12 0.09
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (68 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCTGAGGTAATTTCAATTTTGTT
TTC
Found at i:82109569 original size:156 final size:159
Alignment explanation
Indices: 82109299--82109590 Score: 432
Period size: 156 Copynumber: 1.8 Consensus size: 159
82109289 CTACTTTTTC
* * * ** *
82109299 AAAATTCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGC-AGAAGTGAGTTGAGCCTCGAAGCACGCTGAGGTAATTTCAATTTT
* ** *
82109364 TGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
65 TGTGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
82109429 CAATTTTCGTTTTTTTAATTTATGTTTCAAA
130 -AATTTTCGTTTTTTTAATTTATGTTTCAAA
82109460 AAAAATCAACTCATATTGC-GAAGTGAGTTGAGCCTC-AAG-ACGCTGAGGTAATTTCAA-TTTT
1 AAAAATCAACTCATATTGCAGAAGTGAGTTGAGCCTCGAAGCACGCTGAGGTAATTTCAATTTTT
82109521 GT-TTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
66 GTGTT-TCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
82109585 AATTTT
130 AATTTT
82109591 GTTATCAAAA
Statistics
Matches: 120, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
155 8 0.07
156 61 0.51
157 17 0.14
158 1 0.01
159 16 0.13
161 17 0.14
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (159 bp):
AAAAATCAACTCATATTGCAGAAGTGAGTTGAGCCTCGAAGCACGCTGAGGTAATTTCAATTTTT
GTGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTA
ATTTTCGTTTTTTTAATTTATGTTTCAAA
Found at i:82109670 original size:12 final size:13
Alignment explanation
Indices: 82109653--82109681 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
82109643 CGCTGAGGTA
82109653 TTTTCAATTT-TG
1 TTTTCAATTTCTG
82109665 TTTTCAATTTCTG
1 TTTTCAATTTCTG
82109678 TTTT
1 TTTT
82109682 TCAAAAATCG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.14, C:0.10, G:0.07, T:0.69
Consensus pattern (13 bp):
TTTTCAATTTCTG
Found at i:82109733 original size:228 final size:226
Alignment explanation
Indices: 82109295--82109801 Score: 681
Period size: 228 Copynumber: 2.2 Consensus size: 226
82109285 ATTTCTACTT
* * * * *
82109295 TTTCAAAATTCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAA
1 TTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
** *
82109360 TTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
66 TTTTTGTGTTAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGACACGCTGAGGTA
*
82109425 TTTTCAATTTTCGTTTTTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAAGTGAGTTG
130 TTTTCAATTTTCG-TTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAAGTGAGTTG
*
82109490 AGCCTCAAGACGCTGAGGTAATTTCAATTT-TG
194 AGCCTCAACACGCTGAGGTAATTTCAATTTCTG
82109522 TTTGTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT-
1 -TT-TCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
82109585 AA-TTTTGT-TATCAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCT-GGCTCACACGCT
64 AATTTTTGTGT-T-AAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG---ACACGCT
* *** *
82109647 GAGGTATTTTCAATTTT-G-TTTTCAATTTCTGTTT-TTCAAAAATCGACTCATATTGCGAGAGG
124 GAGGTATTTTCAATTTTCGTTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGA-A-G
82109709 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
187 TGAGTTGAGCCTCA--ACACGCTGAGGTAATTTCAATTTCTG
82109751 TTTCAAAAATTCAACTCATATTGCGAAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTC-AAAATTCAACTCATATTGCG-AGAGGTGAGTTGAGCCTCAGGACAC
82109802 CTGGGCGCTG
Statistics
Matches: 250, Mismatches: 15, Indels: 26
0.86 0.05 0.09
Matches are distributed among these distances:
224 20 0.08
225 18 0.07
226 22 0.09
227 40 0.16
228 102 0.41
229 23 0.09
230 25 0.10
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.34
Consensus pattern (226 bp):
TTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTTTGTGTTAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGACACGCTGAGGTAT
TTTCAATTTTCGTTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAAGTGAGTTGAG
CCTCAACACGCTGAGGTAATTTCAATTTCTG
Found at i:82109756 original size:85 final size:85
Alignment explanation
Indices: 82109595--82109753 Score: 241
Period size: 86 Copynumber: 1.8 Consensus size: 85
82109585 AATTTTGTTA
*
82109595 TCAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTGGCTCACACGCTGAGGTATTTTCAA
1 TCAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTGG--CACACGCTGAGGTAATTTCAA
82109660 TTTTGTTTTCAATTTCTGTTTT
64 TTTTGTTTTCAATTTCTGTTTT
*
82109682 TCAAAAA-TCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAA
1 TCAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCT--GGCACACGCTGAGGTAATTTCAA
82109745 TTTCTGTTT
64 TTT-TGTTT
82109754 CAAAAATTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
85 22 0.33
86 36 0.54
87 7 0.10
88 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (85 bp):
TCAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTGGCACACGCTGAGGTAATTTCAATT
TTGTTTTCAATTTCTGTTTT
Found at i:82109785 original size:73 final size:72
Alignment explanation
Indices: 82109666--82109801 Score: 229
Period size: 73 Copynumber: 1.9 Consensus size: 72
82109656 TCAATTTTGT
*
82109666 TTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTCAATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
82109731 TGAGGTAA
65 TGAGGTAA
82109739 TTTCAATTTCTG-TTTCAAAAATTCAACTCATATTGCGAAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGTTTTCAAAAA-TCAACTCATATTGCG-AGAGGTGAGTTGAGCCTCAGGACAC
82109802 CTGGGCGCTG
Statistics
Matches: 60, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
71 9 0.15
72 14 0.23
73 37 0.62
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (72 bp):
TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTAA
Found at i:82109820 original size:157 final size:151
Alignment explanation
Indices: 82109511--82109856 Score: 436
Period size: 157 Copynumber: 2.2 Consensus size: 151
82109501 GCTGAGGTAA
*
82109511 TTTCAATTT-TGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
82109574 TGAGGTAATTTAATTTTGTTATCAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTGGCT
66 TGAGGTAATTTAATTTTGTTATCAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTGG--
* * **
82109639 CACACGCTGAGGTATTTTCAATTTTGT
129 CACACGCTGAGGCACTGGCAA---T-T
*
82109666 TTTCAATTTCTGTTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
82109731 TGAGGTAATTTCAATTTCTGTT-TCAAAAATTCAACTCATATTGCGAAGAGGTGAGTTGAGCCTC
66 TGAGGTAATTT-AATTT-TGTTATCAAAAATTCAACTCATATTGCG-AGAGGTGAGTTGAGCCT-
* *
82109795 AGG-ACAC-CTG-GGCGCTGGCGTATT
127 -GGCACACGCTGAGGCACTGGC-AATT
*
82109819 TTTAAATTTCTG-TTTTCAAAAGATCAACTCATTATTGC
1 TTTCAATTTCTGTTTTTCAAAA-ATCAACTCA-TATTGC
82109857 AGATGATGTG
Statistics
Matches: 171, Mismatches: 10, Indels: 21
0.85 0.05 0.10
Matches are distributed among these distances:
152 9 0.05
153 20 0.12
154 7 0.04
155 9 0.05
156 11 0.06
157 60 0.35
158 32 0.19
159 21 0.12
161 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34
Consensus pattern (151 bp):
TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTAATTTAATTTTGTTATCAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTGGCA
CACGCTGAGGCACTGGCAATT
Found at i:82110608 original size:28 final size:27
Alignment explanation
Indices: 82110577--82110730 Score: 91
Period size: 30 Copynumber: 5.3 Consensus size: 27
82110567 CAAAGCCACT
82110577 CTTTCCACAGCAACTCCACTAGCCACAC
1 CTTTCCACA-CAACTCCACTAGCCACAC
*
82110605 CTTTTCCACTACCAACTCCACTAGCCACTC
1 C-TTTCCAC-A-CAACTCCACTAGCCACAC
* *
82110635 TTTTTTCCACCAACCACTCCACTAG-C-CAC
1 --CTTTCCA-C-ACAACTCCACTAGCCACAC
* *
82110664 CTTGTCCACCCTCAACTCCA-TAGCCATC-T
1 CTT-TCCA--CACAACTCCACTAGCCA-CAC
*
82110693 TTTTCCACACTAACTCCACTAAGCCACAC
1 CTTTCCACAC-AACTCCACT-AGCCACAC
82110722 CTTGTCCAC
1 CTT-TCCAC
82110731 CACCACTTTG
Statistics
Matches: 97, Mismatches: 14, Indels: 28
0.70 0.10 0.20
Matches are distributed among these distances:
26 2 0.02
27 12 0.12
28 19 0.20
29 20 0.21
30 25 0.26
31 17 0.18
32 2 0.02
ACGTcount: A:0.25, C:0.45, G:0.05, T:0.25
Consensus pattern (27 bp):
CTTTCCACACAACTCCACTAGCCACAC
Found at i:82110727 original size:58 final size:56
Alignment explanation
Indices: 82110570--82110731 Score: 179
Period size: 58 Copynumber: 2.8 Consensus size: 56
82110560 AACTTTTCAA
* * *
82110570 AGCCA-CTCTTTCCACAGCAACTCCACTAGCCACACCTTTTCCACTACCAACTCCACT
1 AGCCATCTTTTTCCACA-CAACTCCACTAGCCACACCTTGTCCAC-CCCAACTCCACT
*
82110627 AGCCACTCTTTTTTCCACCAACCACTCCACTAG-C-CACCTTGTCCACCCTCAACTCCA-T
1 AGCCA-TC-TTTTTCCA-C-ACAACTCCACTAGCCACACCTTGTCCACCC-CAACTCCACT
82110685 AGCCATCTTTTTCCACACTAACTCCACTAAGCCACACCTTGTCCACC
1 AGCCATCTTTTTCCACAC-AACTCCACT-AGCCACACCTTGTCCACC
82110732 ACCACTTTGT
Statistics
Matches: 90, Mismatches: 5, Indels: 19
0.79 0.04 0.17
Matches are distributed among these distances:
54 2 0.02
55 9 0.10
56 10 0.11
57 8 0.09
58 20 0.22
59 20 0.22
60 8 0.09
61 12 0.13
62 1 0.01
ACGTcount: A:0.25, C:0.45, G:0.06, T:0.25
Consensus pattern (56 bp):
AGCCATCTTTTTCCACACAACTCCACTAGCCACACCTTGTCCACCCCAACTCCACT
Found at i:82110959 original size:15 final size:14
Alignment explanation
Indices: 82110939--82110968 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
82110929 TGTAAGGTAG
82110939 TTTTTTGGAGAATAA
1 TTTTTTGGAG-ATAA
82110954 TTTTTTGGAGATAA
1 TTTTTTGGAGATAA
82110968 T
1 T
82110969 CAAAATCAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (14 bp):
TTTTTTGGAGATAA
Found at i:82111319 original size:28 final size:27
Alignment explanation
Indices: 82111288--82111355 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
82111278 TATTTACGTC
*
82111288 TATATATATTTTTTTATAAAATTTATTT
1 TATATATATTTTTATATAAAA-TTATTT
* * * *
82111316 TATATATCTTTTAATATTATATTATTT
1 TATATATATTTTTATATAAAATTATTT
82111343 TATATATATTTTT
1 TATATATATTTTT
82111356 CTACATGTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
27 17 0.52
28 16 0.48
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (27 bp):
TATATATATTTTTATATAAAATTATTT
Found at i:82111352 original size:14 final size:14
Alignment explanation
Indices: 82111288--82111352 Score: 55
Period size: 14 Copynumber: 4.7 Consensus size: 14
82111278 TATTTACGTC
*
82111288 TATATATATTTTTT
1 TATATATATTATTT
*
82111302 TATA-AAATTTATTT
1 TATATATA-TTATTT
*
82111316 TATATAT-CT-TTT
1 TATATATATTATTT
*
82111328 AATATTATATTATTT
1 TATA-TATATTATTT
82111343 TATATATATT
1 TATATATATT
82111353 TTTCTACATG
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
12 6 0.15
13 6 0.15
14 20 0.51
15 7 0.18
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (14 bp):
TATATATATTATTT
Found at i:82111593 original size:7 final size:7
Alignment explanation
Indices: 82111575--82111617 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
82111565 TATTAATTAT
*
82111575 TATTCTA
1 TATTTTA
82111582 TATTTTA
1 TATTTTA
82111589 TATTTTA
1 TATTTTA
*
82111596 -A-TTAA
1 TATTTTA
82111601 TATTTTA
1 TATTTTA
82111608 TATTTTA
1 TATTTTA
82111615 TAT
1 TAT
82111618 ATTTTATTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
5 3 0.10
6 2 0.06
7 26 0.84
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (7 bp):
TATTTTA
Found at i:82111596 original size:26 final size:25
Alignment explanation
Indices: 82111533--82111628 Score: 88
Period size: 26 Copynumber: 3.7 Consensus size: 25
82111523 TATGTACATC
* *
82111533 TTTTTTATTTTAATT-TTATTTTTA
1 TTTTATATTTTAATTATTATTTATA
*
82111557 TTTGTCA-ATATTAATTATTATTCTATA
1 TTT-T-ATATTTTAATTATTATT-TATA
*
82111584 TTTTATATTTTAATTAATATTTTATA
1 TTTTATATTTTAATTATTA-TTTATA
*
82111610 TTTTATATATTTTATTATT
1 TTTTATAT-TTTAATTATT
82111629 CCCATCATTG
Statistics
Matches: 58, Mismatches: 7, Indels: 11
0.76 0.09 0.14
Matches are distributed among these distances:
24 3 0.05
25 10 0.17
26 29 0.50
27 16 0.28
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (25 bp):
TTTTATATTTTAATTATTATTTATA
Found at i:82119376 original size:17 final size:17
Alignment explanation
Indices: 82119356--82119395 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
82119346 GAAAATATTA
*
82119356 AAAATAAATAAATAAAT
1 AAAATAAACAAATAAAT
*
82119373 AAAAAAAACAAATAAAT
1 AAAATAAACAAATAAAT
82119390 ACAAAT
1 A-AAAT
82119396 TTAATGATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 16 0.84
18 3 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (17 bp):
AAAATAAACAAATAAAT
Found at i:82126005 original size:19 final size:21
Alignment explanation
Indices: 82125971--82126015 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
82125961 AATTTATCAT
*
82125971 ATTTTAATTATTATAT-TAAA
1 ATTTTAAATATTATATATAAA
82125991 ATTTTAAAT-TTATATATAAA
1 ATTTTAAATATTATATATAAA
82126011 ATTTT
1 ATTTT
82126016 TCATACAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTTTAAATATTATATATAAA
Found at i:82129934 original size:36 final size:36
Alignment explanation
Indices: 82129857--82129966 Score: 127
Period size: 37 Copynumber: 3.0 Consensus size: 36
82129847 GCTCAGATGA
* * *
82129857 AATCTCCACACGAAGTTATCGGGGTCTACCCGGACAA-
1 AATCTCCACACGTAGTCATCGGGCT-TACCCGGA-AAT
82129894 AATCTCCACACGTAGTCATCGGGCTTACCCGGAAAT
1 AATCTCCACACGTAGTCATCGGGCTTACCCGGAAAT
*
82129930 AATCTTCCGC-CGTAGTCATCGGGTCTTACCC-GAAAT
1 AATC-TCCACACGTAGTCATCGGG-CTTACCCGGAAAT
82129966 A
1 A
82129967 TTTCCAAGTT
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
35 2 0.03
36 31 0.47
37 33 0.50
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (36 bp):
AATCTCCACACGTAGTCATCGGGCTTACCCGGAAAT
Found at i:82130336 original size:48 final size:48
Alignment explanation
Indices: 82130103--82130375 Score: 307
Period size: 47 Copynumber: 5.8 Consensus size: 48
82130093 GCACATCGCC
*
82130103 TACATATTTCACACTAGCCATTCGGC-TTACCACAT-TACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
82130149 TACATA-TTCACACTAGCCATTTGGCTTTACCACAT-TTCA-ATACTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT-CTCA
* *
82130195 TATATATATTCACA-TATGACCATTC-GC-TTACCACATATGCAT-TCTCA
1 TACATAT-TTCACATTA-G-CCATTCGGCTTTACCACATATACATATCTCA
* *
82130242 TACATATTTCACATTAGCCATTCGGCTTTACCAC-TATGCATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
82130289 TACATACTTTCACATTAG-CATTCGGCTTTACTACATATATATATCTCA
1 TACATA-TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
82130337 TACGTATTTCACATTAGCCATTCGGCCTTATCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
82130376 TCCATGTTCA
Statistics
Matches: 198, Mismatches: 14, Indels: 28
0.82 0.06 0.12
Matches are distributed among these distances:
45 26 0.13
46 43 0.22
47 67 0.34
48 57 0.29
49 5 0.03
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:82130442 original size:45 final size:46
Alignment explanation
Indices: 82130345--82130465 Score: 149
Period size: 45 Copynumber: 2.7 Consensus size: 46
82130335 CATACGTATT
* *
82130345 TCACATTAGCCATTCGGCCTTATCACATATATCCATGTTCATATTCA
1 TCACATTGGCCATTC-GCCTTAACACATATATCCATGTTCATATTCA
* *
82130392 T--CATTGGCCATTCGCCTTAACAC-TATATGCTTGTTCATATTCA
1 TCACATTGGCCATTCGCCTTAACACATATATCCATGTTCATATTCA
* * *
82130435 TCACATTGGCCATTCGGCTTATCGCATATAT
1 TCACATTGGCCATTCGCCTTAACACATATAT
82130466 ACACATAAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
43 19 0.30
44 9 0.14
45 30 0.47
46 5 0.08
47 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.37
Consensus pattern (46 bp):
TCACATTGGCCATTCGCCTTAACACATATATCCATGTTCATATTCA
Found at i:82134411 original size:16 final size:15
Alignment explanation
Indices: 82134386--82134416 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
82134376 TTGCTCAAAT
82134386 TACTGGCACGAAGCC
1 TACTGGCACGAAGCC
82134401 TACTAGGCACGAAGCC
1 TACT-GGCACGAAGCC
82134417 CGAATTACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.29, C:0.32, G:0.26, T:0.13
Consensus pattern (15 bp):
TACTGGCACGAAGCC
Found at i:82134583 original size:77 final size:79
Alignment explanation
Indices: 82134472--82134858 Score: 480
Period size: 77 Copynumber: 5.0 Consensus size: 79
82134462 ATATAACACC
* ** * *
82134472 AGCACGAATGCTCTTCGGGGTTTAGCACGGGATATCACTAGCACGAATGCTCTTCGGAACTTAGT
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGAATATCACTAGCACGAATGCTCTTCGGAACTTAGT
82134537 -CGGATA-ATCACT
66 CCGGATACATCACT
* * *
82134549 AGCATGAATGCTCTTCGGGACTTAATCCCGGATATATCACTAGCATGAATGC-CTTCAGAACTTA
1 AGCATGAATGCTCTTCGGGACTT-AGCCCGGA-ATATCACTAGCACGAATGCTCTTCGGAACTTA
82134613 GTCCGGATACAT-ACT
64 GTCCGGATACATCACT
82134628 AGCATG-ATGC-CTCTCGGGACTTAGCCCGGATATATCACTAGC-CGAATGCTCTTCGGAACTTA
1 AGCATGAATGCTCT-TCGGGACTTAGCCCGGA-ATATCACTAGCACGAATGCTCTTCGGAACTTA
82134690 GTCCGGATACATCACT
64 GTCCGGATACATCACT
82134706 A-CATGAATGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAATGCTC-TCGGAACTTAG
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGA-ATATCACTAGCACGAATGCTCTTCGGAACTTAG
82134768 TCCGGATACATCACT
65 TCCGGATACATCACT
** * *
82134783 AGCATGAATGCTCTTC-GGAC--AGCCCAAATATATCA-TAGCACGAATGCCCTTCAGG-ATTTA
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGA-ATATCACTAGCACGAATGCTCTTC-GGAACTTA
* *
82134843 GCCCGGATATATCACT
64 GTCCGGATACATCACT
82134859 CTCAATTCTC
Statistics
Matches: 280, Mismatches: 17, Indels: 27
0.86 0.05 0.08
Matches are distributed among these distances:
75 13 0.05
76 39 0.14
77 123 0.44
78 68 0.24
79 35 0.12
80 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (79 bp):
AGCATGAATGCTCTTCGGGACTTAGCCCGGAATATCACTAGCACGAATGCTCTTCGGAACTTAGT
CCGGATACATCACT
Found at i:82134854 original size:39 final size:39
Alignment explanation
Indices: 82134444--82134858 Score: 408
Period size: 39 Copynumber: 10.7 Consensus size: 39
82134434 GCATGATTGT
* * *
82134444 TCTTCGGGACCTAGCCC-GATATAACACCAGCACGAATGC
1 TCTTC-GGACTTAGCCCGGATATATCACTAGCACGAATGC
** * *
82134483 TCTTCGGGGTTTAGCACGG-GATATCACTAGCACGAATGC
1 TCTTC-GGACTTAGCCCGGATATATCACTAGCACGAATGC
* *
82134522 TCTTCGGAACTTAG-TCGGATA-ATCACTAGCATGAATGC
1 TCTTCGG-ACTTAGCCCGGATATATCACTAGCACGAATGC
* *
82134560 TCTTCGGGACTTAATCCCGGATATATCACTAGCATGAATGC
1 TCTTC-GGACTT-AGCCCGGATATATCACTAGCACGAATGC
* * * *
82134601 -CTTCAGAACTTAGTCCGGATACAT-ACTAGCATG-ATGC
1 TCTTC-GGACTTAGCCCGGATATATCACTAGCACGAATGC
82134638 -CTCTCGGGACTTAGCCCGGATATATCACTAGC-CGAATGC
1 TCT-TC-GGACTTAGCCCGGATATATCACTAGCACGAATGC
* * *
82134677 TCTTCGGAACTTAGTCCGGATACATCACTA-CATGAATGC
1 TCTTCGG-ACTTAGCCCGGATATATCACTAGCACGAATGC
82134716 TCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGC
1 TCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGC
* * *
82134755 TC-TCGGAACTTAGTCCGGATACATCACTAGCATGAATGC
1 TCTTCGG-ACTTAGCCCGGATATATCACTAGCACGAATGC
**
82134794 TCTTCGGAC--AGCCCAAATATATCA-TAGCACGAATGC
1 TCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGC
* *
82134830 CCTTCAGGATTTAGCCCGGATATATCACT
1 TCTTC-GGACTTAGCCCGGATATATCACT
82134859 CTCAATTCTC
Statistics
Matches: 314, Mismatches: 42, Indels: 39
0.79 0.11 0.10
Matches are distributed among these distances:
36 15 0.05
37 20 0.06
38 85 0.27
39 154 0.49
40 23 0.07
41 17 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
TCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGC
Found at i:82136157 original size:37 final size:38
Alignment explanation
Indices: 82136098--82136204 Score: 148
Period size: 37 Copynumber: 2.9 Consensus size: 38
82136088 AGCTCAGATG
* *
82136098 AAATCTCCACACGAAGTTATCGGGTCTTACCCGA-ACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAGACA
82136135 AAATCTCCACACGTAGTCATCGGGTCTTACCC-AGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAGACA
* *
82136172 TAAT-TCCGCACGTAGTCATCGCGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCG-GGTCTTACCCG
82136205 GAATATATTC
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
36 17 0.27
37 46 0.73
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (38 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGAGACA
Found at i:82136415 original size:47 final size:49
Alignment explanation
Indices: 82136344--82136612 Score: 253
Period size: 47 Copynumber: 5.7 Consensus size: 49
82136334 ATATACGCAC
*
82136344 ATCTCCTACATAT-TTCACACTAGCCATTCGGCTTT-CCACATATAC-T
1 ATCTCATACATATATTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
82136390 ATCTCATACATATATTCACACTAGCCATTTGGCTTTACCATATTTACAT
1 ATCTCATACATATATTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
82136439 ATCTCATATATAATATTTCACA-TTGACCATTCGGGC-TTA-CACA-ATGCAT
1 ATCTCATACAT-ATA-TTCACACTAG-CCATTC-GGCTTTACCACATATACAT
* *
82136488 ATCTCATACATAT-TTCACATTAGCCATTCGGCTTTACCA-ATATGCAT
1 ATCTCATACATATATTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
82136535 ATCTCATACAT-TACTTCACATTAGCCATTCGGCTTCTACCATATATATA-
1 ATCTCATACATATA-TTCACACTAGCCATTCGGCTT-TACCACATATACAT
* *
82136584 AT-TC--ACGTAT-TTCACATTAGCCATTCGGC
1 ATCTCATACATATATTCACACTAGCCATTCGGC
82136613 CTATCACACA
Statistics
Matches: 192, Mismatches: 15, Indels: 33
0.80 0.06 0.14
Matches are distributed among these distances:
45 22 0.11
46 32 0.17
47 43 0.22
48 33 0.17
49 32 0.17
50 13 0.07
51 14 0.07
52 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.36
Consensus pattern (49 bp):
ATCTCATACATATATTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:82136469 original size:98 final size:95
Alignment explanation
Indices: 82136353--82136612 Score: 275
Period size: 98 Copynumber: 2.7 Consensus size: 95
82136343 CATCTCCTAC
* *
82136353 ATATTTCACACTAGCCATTCGGCTTTCCACATATAC-TATCTCATACATATATTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACACA-ATACATATCTCATACATAT-TTCACACTAGCCA
* * *
82136417 TTTGGCTTTACCATATTTACATATCTCATATAT
64 TTCGGCTTTACCA-ATATACATATCTCATACAT
* *
82136450 AATATTTCACATT-GACCATTCGGGC-TTACACAATGCATATCTCATACATATTTCACATTAGCC
1 -ATATTTCACATTAG-CCATTC-GGCTTTACACAATACATATCTCATACATATTTCACACTAGCC
*
82136513 ATTCGGCTTTACCAATATGCATATCTCATACAT
63 ATTCGGCTTTACCAATATACATATCTCATACAT
* * * *
82136546 -TACTTCACATTAGCCATTCGGCTTCTAC-CATATATATAAT-TC--ACGTATTTCACATTAGCC
1 ATATTTCACATTAGCCATTCGGCTT-TACACA-ATACAT-ATCTCATACATATTTCACACTAGCC
82136606 ATTCGGC
63 ATTCGGC
82136613 CTATCACACA
Statistics
Matches: 142, Mismatches: 12, Indels: 21
0.81 0.07 0.12
Matches are distributed among these distances:
93 27 0.19
94 19 0.13
95 10 0.07
96 18 0.13
97 28 0.20
98 37 0.26
99 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (95 bp):
ATATTTCACATTAGCCATTCGGCTTTACACAATACATATCTCATACATATTTCACACTAGCCATT
CGGCTTTACCAATATACATATCTCATACAT
Found at i:82136717 original size:46 final size:47
Alignment explanation
Indices: 82136550--82136719 Score: 178
Period size: 47 Copynumber: 3.7 Consensus size: 47
82136540 ATACATTACT
* **
82136550 TCACATTAGCCATTCGG-CTTCTAC-CATATATATAAT-TCACGTATT--
1 TCACATTAGCCATTCGGCCTTATACACATATAT-CCATGTCA--TATTCA
82136595 TCACATTAGCCATTCGGCC-TATCACACATATATCCATGTCATATTCA
1 TCACATTAGCCATTCGGCCTTAT-ACACATATATCCATGTCATATTCA
* *
82136642 TCACATTGGCCATTCGGCCTT-TACACATATATGCATGTTCATATTCA
1 TCACATTAGCCATTCGGCCTTATACACATATATCCATG-TCATATTCA
*
82136689 TCACATT-GCCATTCGGCCTTAT-CGCATATAT
1 TCACATTAGCCATTCGGCCTTATACACATATAT
82136720 ACACATAAAA
Statistics
Matches: 110, Mismatches: 6, Indels: 17
0.83 0.05 0.13
Matches are distributed among these distances:
45 23 0.21
46 40 0.36
47 46 0.42
48 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (47 bp):
TCACATTAGCCATTCGGCCTTATACACATATATCCATGTCATATTCA
Found at i:82151337 original size:79 final size:81
Alignment explanation
Indices: 82151235--82151419 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
82151225 GCTCCTCGTT
* *
82151235 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
82151298 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
82151315 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
82151379 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
82151395 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82151420 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:82151419 original size:40 final size:40
Alignment explanation
Indices: 82151235--82151419 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
82151225 GCTCCTCGTT
* *
82151235 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
82151275 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
82151315 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
82151354 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
82151395 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82151420 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:82154082 original size:26 final size:26
Alignment explanation
Indices: 82154053--82154156 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
82154043 ATTCCCATCT
* *
82154053 TGGAATATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
82154079 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
82154105 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
82154131 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
82154157 ATTTGTACCA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.34
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Done.