Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 252 of 325
Found at i:82154110 original size:52 final size:52
Alignment explanation
Indices: 82154053--82154156 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
82154043 ATTCCCATCT
82154053 TGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCA
1 TGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCA
*
82154105 TGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCA
1 TGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCA
82154157 ATTTGTACCA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.34
Consensus pattern (52 bp):
TGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCA
Found at i:82157532 original size:18 final size:18
Alignment explanation
Indices: 82157509--82157544 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
82157499 ACTAAAGTAA
82157509 CCTTAATATATTTATATC
1 CCTTAATATATTTATATC
82157527 CCTTAATATATTTATATC
1 CCTTAATATATTTATATC
82157545 AAAACATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (18 bp):
CCTTAATATATTTATATC
Found at i:82157770 original size:13 final size:13
Alignment explanation
Indices: 82157752--82157776 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82157742 GATATAAATT
82157752 CACACAAAATAAA
1 CACACAAAATAAA
82157765 CACACAAAATAA
1 CACACAAAATAA
82157777 TTTTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:82159090 original size:45 final size:45
Alignment explanation
Indices: 82159026--82159115 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
82159016 CTCCCTCTGA
82159026 TATACTTGTTCAATCAAAAAAATTCCCTTCACACACAATTACAGT
1 TATACTTGTTCAATCAAAAAAATTCCCTTCACACACAATTACAGT
82159071 TATACTTGTTCAATCAAAAAAATTCCCTTCACACACAATTACAGT
1 TATACTTGTTCAATCAAAAAAATTCCCTTCACACACAATTACAGT
82159116 CATATAACTC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.31
Consensus pattern (45 bp):
TATACTTGTTCAATCAAAAAAATTCCCTTCACACACAATTACAGT
Found at i:82160696 original size:18 final size:19
Alignment explanation
Indices: 82160675--82160724 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
82160665 TAACAGTCAG
*
82160675 TTATTCAGTAACGA-TAAA
1 TTATTCAGTAACAATTAAA
*
82160693 TTATTCAGTAA-AATTCAA
1 TTATTCAGTAACAATTAAA
82160711 TTATTCAGTAACAA
1 TTATTCAGTAACAA
82160725 ATTTTTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 1 0.04
18 25 0.89
19 2 0.07
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.36
Consensus pattern (19 bp):
TTATTCAGTAACAATTAAA
Found at i:82160782 original size:18 final size:19
Alignment explanation
Indices: 82160737--82160795 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 19
82160727 TTTTTTTACG
*
82160737 CAGT-AGCAGTCAGTTATA
1 CAGTAAGCAGTCAGTTATT
82160755 CAGTAA-CAGTCAGTTATT
1 CAGTAAGCAGTCAGTTATT
* *
82160773 CAG-AAGCAGTTAATTATT
1 CAGTAAGCAGTCAGTTATT
82160791 CAGTA
1 CAGTA
82160796 TCTTTAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 2 0.06
18 31 0.89
19 2 0.06
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (19 bp):
CAGTAAGCAGTCAGTTATT
Found at i:82162054 original size:4 final size:4
Alignment explanation
Indices: 82162045--82162069 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
82162035 AATTTTCCCT
82162045 TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC T
82162070 CGTCTGTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:82162151 original size:3 final size:3
Alignment explanation
Indices: 82162143--82162181 Score: 62
Period size: 3 Copynumber: 13.0 Consensus size: 3
82162133 TGTTCATTAA
82162143 ATT ATT ATT ATT ATT ATT ATT ATT ATT A-T ATAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT
82162182 TATACTTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:82162473 original size:3 final size:3
Alignment explanation
Indices: 82162465--82162498 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
82162455 TAAATATCTT
82162465 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
82162499 CAACAACAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:82162674 original size:16 final size:13
Alignment explanation
Indices: 82162642--82162676 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
82162632 ATATGAAACC
82162642 ATAATAATAATTA
1 ATAATAATAATTA
82162655 ATAATAATAATT-
1 ATAATAATAATTA
82162667 ATATATAATA
1 ATA-ATAATA
82162677 TATATATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 3 0.14
13 18 0.86
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAATAATAATTA
Found at i:82164113 original size:46 final size:45
Alignment explanation
Indices: 82163969--82164136 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 45
82163959 TGTGTGAGCT
* * * * *
82163969 AGTGCAAGACATGTCTAGGACATGCATCGACCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGA-AGCC
* * *
82164015 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGCGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAAGC-C
*
82164062 TAGTGTAGGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AAGCC
*
82164109 AGTGTAAGACATGTCTGGGACATACATC
1 AGTGTAAGACATGTCTGGGACATGCATC
82164137 AGTTATGAAA
Statistics
Matches: 101, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
46 51 0.50
47 29 0.29
48 20 0.20
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.21
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAAGCC
Found at i:82170045 original size:40 final size:40
Alignment explanation
Indices: 82169959--82170071 Score: 115
Period size: 40 Copynumber: 2.8 Consensus size: 40
82169949 GACTATGTTC
*
82169959 AGCACTAAGTGTGCGGTTCGAAATAGCTTTGGCTACAAATG
1 AGCACTAAGTGTGCGGTTCGAAATAGCTTCGGCTA-AAATG
* *
82170000 A-CACTAAGTGTGCGAGTT-GGAATAGCTTCGGCT-ATATG
1 AGCACTAAGTGTGCG-GTTCGAAATAGCTTCGGCTAAAATG
* * *
82170038 AGGCACTAAGTGTGTGATATCGAGATAGCTTCGG
1 A-GCACTAAGTGTGCGGT-TCGAAATAGCTTCGG
82170072 TTTATTGAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
38 5 0.08
39 1 0.02
40 39 0.65
41 15 0.25
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (40 bp):
AGCACTAAGTGTGCGGTTCGAAATAGCTTCGGCTAAAATG
Found at i:82176419 original size:42 final size:41
Alignment explanation
Indices: 82176311--82176456 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 41
82176301 TTTTGATATG
* * *
82176311 TGATTTCGTGTAAGACCACT-TCTGGGACGTTGGAATCG-ATT
1 TGATTTCATGTAAGACC-CTGTCTGGGAC-ATGGCATCGTATT
* *
82176352 TGAAATTTACATGTAAGGCCATGTCTGGGACATCGGCATCGTATT
1 TG--ATTT-CATGTAAGACCCTGTCTGGGACAT-GGCATCGTATT
* *
82176397 TGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCATCGATATT
1 TGATTTCATGTAAGACCCTGTCTGGGACA-TGGCATCG-TATT
*
82176440 TGATTACATGTAAGACC
1 TGATTTCATGTAAGACC
82176457 ACATTTGGGA
Statistics
Matches: 86, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
41 2 0.02
42 26 0.30
43 30 0.35
44 23 0.27
45 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (41 bp):
TGATTTCATGTAAGACCCTGTCTGGGACATGGCATCGTATT
Found at i:82176454 original size:43 final size:42
Alignment explanation
Indices: 82176319--82176457 Score: 131
Period size: 42 Copynumber: 3.2 Consensus size: 42
82176309 TGTGATTTCG
* * *
82176319 TGTAAGACCACT-TCTGGGACGTTGGAATCG-ATTTGAAATTTACA
1 TGTAAGACCA-TGTCTGGGACATCGGCATCGTATTTG--A-TTACA
* * *
82176363 TGTAAGGCCATGTCTGGGACATCGGCATCGTATTTGATTTCG
1 TGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATTACA
* *
82176405 TGTAAGACCCTGTCTGGGATAGT-GGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACA-TCGGCATCG-TATTTGATTACA
82176448 TGTAAGACCA
1 TGTAAGACCA
82176458 CATTTGGGAT
Statistics
Matches: 79, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
42 28 0.35
43 22 0.28
44 24 0.30
45 5 0.06
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATCGGCATCGTATTTGATTACA
Found at i:82178369 original size:101 final size:101
Alignment explanation
Indices: 82178076--82178583 Score: 520
Period size: 101 Copynumber: 5.1 Consensus size: 101
82178066 CATTCAGACG
* *
82178076 TAAGACCATGGTTAGACCATGG-AAGTGTATATATATATATTACCATAGCTGGGCTATGGCCTTC
1 TAAGACCATGGTTAGACCATGGCAA-TGTATATATATA-A-GACCATAGCTGGGCTATGGCATTC
* * * *
82178140 TGATGGTAAGACCATAATCGGGTTATGGCACTATGAGCA
63 TAATGGTAAGACCATAACCGAGTTATGGCACTATGAACA
* * * * * * * * * *
82178179 TAAGACCATAGTTGGACCATTGTATTGTATATATATATAATAGCATAGTTTGGCTATGGCATTTT
1 TAAGACCATGGTTAGACCATGGCAATG--TATATATATAAGACCATAGCTGGGCTATGGCATTCT
* * * *
82178244 GATGGTAAGACCATAACTGAGTTATGACATTATGAACA
64 AATGGTAAGACCATAACCGAGTTATGGCACTATGAACA
* * * *
82178282 TAAGATCATTGTTAGACCATGGCAATGTATATATACAAGACCATAGCTGGGCTATGGCGTTCTAA
1 TAAGACCATGGTTAGACCATGGCAATGTATATATATAAGACCATAGCTGGGCTATGGCATTCTAA
* *
82178347 TGTTAACACCATAACC-AGGTTATGGCACTATGAACA
66 TGGTAAGACCATAACCGA-GTTATGGCACTATGAACA
* * *
82178383 TAAGACCATGGTTGGACCATGGCAGTGTATATATATAAGACCATAGTTGGGCTATGGCATTCTAA
1 TAAGACCATGGTTAGACCATGGCAATGTATATATATAAGACCATAGCTGGGCTATGGCATTCTAA
* * *
82178448 TGGTAATACCATAACCGAGTTATGGCAGTATGAACG
66 TGGTAAGACCATAACCGAGTTATGGCACTATGAACA
* * **
82178484 TAAGACCAT-G---G--CA--G---TGTATATATATAAGACCATAGTTAGGCTATGGCATTCTGG
1 TAAGACCATGGTTAGACCATGGCAATGTATATATATAAGACCATAGCTGGGCTATGGCATTCTAA
* * *
82178538 TGGTAAGACCATAACCGGGTTATGGCACTATAAACG
66 TGGTAAGACCATAACCGAGTTATGGCACTATGAACA
82178574 TAAGACCATG
1 TAAGACCATG
82178584 CCAGGGCCAT
Statistics
Matches: 347, Mismatches: 52, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
90 78 0.22
93 1 0.00
95 2 0.01
97 1 0.00
100 2 0.01
101 156 0.45
102 1 0.00
103 94 0.27
104 2 0.01
105 10 0.03
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.29
Consensus pattern (101 bp):
TAAGACCATGGTTAGACCATGGCAATGTATATATATAAGACCATAGCTGGGCTATGGCATTCTAA
TGGTAAGACCATAACCGAGTTATGGCACTATGAACA
Found at i:82178550 original size:90 final size:90
Alignment explanation
Indices: 82178295--82178583 Score: 319
Period size: 90 Copynumber: 3.1 Consensus size: 90
82178285 GATCATTGTT
* * * * * * *
82178295 AGACCATGGCAATGTATATATACAAGACCATAGCTGGGCTATGGCGTTCTAATGTTAACACCATA
1 AGACCATGGCAGTGTATATATATAAGACCATAGTTAGGCTATGGCATTCTAATGGTAAGACCATA
*
82178360 ACC-AGGTTATGGCACTATGAACATAAGACCATGGTT
66 ACCGA-GTTATGGCAC--T----ATAA-A-C---GTA
* * *
82178396 GGACCATGGCAGTGTATATATATAAGACCATAGTTGGGCTATGGCATTCTAATGGTAATACCATA
1 AGACCATGGCAGTGTATATATATAAGACCATAGTTAGGCTATGGCATTCTAATGGTAAGACCATA
* *
82178461 ACCGAGTTATGGCAGTATGAACGTA
66 ACCGAGTTATGGCACTATAAACGTA
**
82178486 AGACCATGGCAGTGTATATATATAAGACCATAGTTAGGCTATGGCATTCTGGTGGTAAGACCATA
1 AGACCATGGCAGTGTATATATATAAGACCATAGTTAGGCTATGGCATTCTAATGGTAAGACCATA
*
82178551 ACCGGGTTATGGCACTATAAACGTA
66 ACCGAGTTATGGCACTATAAACGTA
82178576 AGACCATG
1 AGACCATG
82178584 CCAGGGCCAT
Statistics
Matches: 169, Mismatches: 18, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
90 92 0.54
93 1 0.01
94 1 0.01
95 3 0.02
99 1 0.01
101 70 0.41
102 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (90 bp):
AGACCATGGCAGTGTATATATATAAGACCATAGTTAGGCTATGGCATTCTAATGGTAAGACCATA
ACCGAGTTATGGCACTATAAACGTA
Found at i:82185012 original size:6 final size:7
Alignment explanation
Indices: 82184994--82185036 Score: 51
Period size: 6 Copynumber: 6.9 Consensus size: 7
82184984 TGTAGATGAA
82184994 TCATTTC
1 TCATTTC
82185001 TCATTT-
1 TCATTTC
82185007 TCATTTC
1 TCATTTC
82185014 T-ATTTC
1 TCATTTC
82185020 T-ATTTC
1 TCATTTC
82185026 -CATTTC
1 TCATTTC
82185032 -CATTT
1 TCATTT
82185037 TGAGAAAACC
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
6 27 0.79
7 7 0.21
ACGTcount: A:0.16, C:0.23, G:0.00, T:0.60
Consensus pattern (7 bp):
TCATTTC
Found at i:82185029 original size:18 final size:19
Alignment explanation
Indices: 82184995--82185036 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
82184985 GTAGATGAAT
*
82184995 CATTTCTCATTTTCATTTC
1 CATTTCTCATTTCCATTTC
*
82185014 TATTTCT-ATTTCCATTTC
1 CATTTCTCATTTCCATTTC
82185032 CATTT
1 CATTT
82185037 TGAGAAAACC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.60
Consensus pattern (19 bp):
CATTTCTCATTTCCATTTC
Found at i:82187796 original size:50 final size:49
Alignment explanation
Indices: 82187673--82187861 Score: 216
Period size: 50 Copynumber: 3.8 Consensus size: 49
82187663 TAGCCAAAGC
* * * *
82187673 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAT
* * * *
82187722 TATCTGGTACATGCAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACC-AAT
* * * *
82187772 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCAA-T
* * *
82187823 TATCGGGTACGCATAGTAGCCTGCACATAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACATAGTACTACACA
82187862 TGCGACCTCA
Statistics
Matches: 117, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 39 0.33
50 44 0.38
51 34 0.29
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAT
Found at i:82187869 original size:101 final size:98
Alignment explanation
Indices: 82187686--82187869 Score: 244
Period size: 101 Copynumber: 1.8 Consensus size: 98
82187676 CTGGTACGCA
* * *
82187686 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCTGGTACATGCAGTAGCCTGCACTTA
1 TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCGGGTACAT-CAGTAGCCTGCACATA
*
82187751 GTACTACACACGTGACCTAACCATCTGATACACG
65 GTACTACACACGCGACCTAACCATCTGATACACG
* * *
82187785 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCAT-AGTAGCCTGCAC
1 TAGTAGCCTGCACATAGTACTACACACGCGA-CCAA-TTATCGGGTA--CATCAGTAGCCTGCAC
*
82187849 ATAGTACTACACATGCGACCT
62 ATAGTACTACACACGCGACCT
82187870 CACAATAGGT
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
99 28 0.38
100 3 0.04
101 39 0.53
103 3 0.04
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (98 bp):
TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCGGGTACATCAGTAGCCTGCACATAG
TACTACACACGCGACCTAACCATCTGATACACG
Found at i:82190013 original size:15 final size:15
Alignment explanation
Indices: 82189961--82190014 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
82189951 TAAAGATAAC
*
82189961 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
82189975 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
82189990 GAA-AAACCCAGAATA
1 -AAGAAACCCAGAATA
82190005 AAGAAACCCA
1 AAGAAACCCA
82190015 AGATACGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
14 11 0.33
15 19 0.58
16 3 0.09
ACGTcount: A:0.61, C:0.19, G:0.13, T:0.07
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:82193132 original size:50 final size:49
Alignment explanation
Indices: 82193022--82193151 Score: 179
Period size: 50 Copynumber: 2.6 Consensus size: 49
82193012 CTGGTACGCA
* *** ** *
82193022 TAGTAGCCTGCACATAGTACTACACATACGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
*
82193071 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
82193121 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
82193152 TCGAAGTTAT
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 29 0.40
50 43 0.60
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:82193205 original size:101 final size:99
Alignment explanation
Indices: 82193022--82193205 Score: 242
Period size: 101 Copynumber: 1.8 Consensus size: 99
82193012 CTGGTACGCA
* * *
82193022 TAGTAGCCTGCACATAGTACTACACATACGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACATAGTACTACACACACGACCAATTATCCGGTACACATAGTAGCCTGCACATA
*
82193087 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* ** * * *
82193121 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACA
1 TAGTAGCCTGCACATAGTACTACACACACGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACA
* *
82193186 TGGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
82193206 CACAATAGGT
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
99 27 0.38
100 3 0.04
101 41 0.58
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (99 bp):
TAGTAGCCTGCACATAGTACTACACACACGACCAATTATCCGGTACACATAGTAGCCTGCACATA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:82204621 original size:21 final size:22
Alignment explanation
Indices: 82204571--82204621 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
82204561 AAAAAATTCA
82204571 TAATT-TATTTTTAAAAAATAT
1 TAATTATATTTTTAAAAAATAT
* **
82204592 GAAAAATATTTTT-AAAAATAT
1 TAATTATATTTTTAAAAAATAT
82204613 TAATTATAT
1 TAATTATAT
82204622 AAAACTTCAT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
TAATTATATTTTTAAAAAATAT
Found at i:82205735 original size:29 final size:30
Alignment explanation
Indices: 82205676--82205733 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
82205666 TCCGAGCCTT
*
82205676 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
82205706 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
82205734 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:82205963 original size:13 final size:13
Alignment explanation
Indices: 82205945--82205976 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
82205935 TTTCCAGCAA
82205945 TTATGAATTTATT
1 TTATGAATTTATT
82205958 TTATGAATTTATT
1 TTATGAATTTATT
*
82205971 TGATGA
1 TTATGA
82205977 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:82206184 original size:50 final size:50
Alignment explanation
Indices: 82206071--82206312 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
82206061 ATTTGGGTAA
* * *
82206071 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
82206127 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
82206177 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
82206227 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
82206277 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
82206313 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:82206260 original size:100 final size:103
Alignment explanation
Indices: 82206071--82206320 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
82206061 ATTTGGGTAA
82206071 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
82206136 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
82206177 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
82206239 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
82206277 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
82206321 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:82210972 original size:29 final size:30
Alignment explanation
Indices: 82210913--82210970 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
82210903 TCCGAGCCTT
*
82210913 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
82210943 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
82210971 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:82211200 original size:13 final size:13
Alignment explanation
Indices: 82211182--82211213 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
82211172 TTTCCAGCAA
82211182 TTATGAATTTATT
1 TTATGAATTTATT
82211195 TTATGAATTTATT
1 TTATGAATTTATT
*
82211208 TGATGA
1 TTATGA
82211214 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:82211421 original size:50 final size:49
Alignment explanation
Indices: 82211308--82211499 Score: 240
Period size: 50 Copynumber: 3.7 Consensus size: 49
82211298 ATTTGGGTAA
*
82211308 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC---AGA-C--G
* *
82211364 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACC-AGACG
* *
82211414 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCA-GACG
*
82211464 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGC
82211500 TTTGGCATGT
Statistics
Matches: 126, Mismatches: 8, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
49 1 0.01
50 49 0.39
51 31 0.25
52 1 0.01
53 3 0.02
55 2 0.02
56 39 0.31
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (49 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCAGACG
Found at i:82211451 original size:26 final size:26
Alignment explanation
Indices: 82211422--82211499 Score: 63
Period size: 26 Copynumber: 3.0 Consensus size: 26
82211412 CGAGAGGTCC
82211422 CATGTAAGACCATGTCTGGGACATGG
1 CATGTAAGACCATGTCTGGGACATGG
* ** * **
82211448 CATG--GGCACCATCAC-GAGAACATCC
1 CATGTAAG-ACCATGTCTG-GGACATGG
82211473 CATGTAAGACCATGTCTGGGACATGG
1 CATGTAAGACCATGTCTGGGACATGG
82211499 C
1 C
82211500 TTTGGCATGT
Statistics
Matches: 35, Mismatches: 12, Indels: 10
0.61 0.21 0.18
Matches are distributed among these distances:
24 2 0.06
25 15 0.43
26 16 0.46
27 2 0.06
ACGTcount: A:0.28, C:0.26, G:0.27, T:0.19
Consensus pattern (26 bp):
CATGTAAGACCATGTCTGGGACATGG
Found at i:82224302 original size:48 final size:48
Alignment explanation
Indices: 82224245--82224337 Score: 150
Period size: 48 Copynumber: 1.9 Consensus size: 48
82224235 CCAATGTACC
* *
82224245 TAATATATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATT
1 TAATATATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATT
* *
82224293 TAATTTATATTACAAAGTTTGTTCCAAGTTTTAGTATTGTAATGT
1 TAATATATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGT
82224338 TGTAATGTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.32, C:0.06, G:0.12, T:0.49
Consensus pattern (48 bp):
TAATATATATTACAAAGTTTGTTCCAAGTTTTAATATTGTAATGTATT
Found at i:82224847 original size:18 final size:18
Alignment explanation
Indices: 82224824--82224888 Score: 78
Period size: 18 Copynumber: 3.6 Consensus size: 18
82224814 GCGACCGTTT
*
82224824 GGGCTCAGGCTCAGGCTC
1 GGGCTCGGGCTCAGGCTC
82224842 GGGCTCGGGCTC-GAGCTC
1 GGGCTCGGGCTCAG-GCTC
* * *
82224860 GAGCTTGGGCTCAAGCTC
1 GGGCTCGGGCTCAGGCTC
82224878 GGGCTCGGGCT
1 GGGCTCGGGCT
82224889 TTGGCTCTGG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
17 1 0.03
18 38 0.97
ACGTcount: A:0.09, C:0.31, G:0.42, T:0.18
Consensus pattern (18 bp):
GGGCTCGGGCTCAGGCTC
Found at i:82224854 original size:6 final size:6
Alignment explanation
Indices: 82224824--82224888 Score: 67
Period size: 6 Copynumber: 10.8 Consensus size: 6
82224814 GCGACCGTTT
* * * * *
82224824 GGGCTC AGGCTC AGGCTC GGGCTC GGGCTC GAGCTC GAGCTT GGGCTC
1 GGGCTC GGGCTC GGGCTC GGGCTC GGGCTC GGGCTC GGGCTC GGGCTC
**
82224872 AAGCTC GGGCTC GGGCT
1 GGGCTC GGGCTC GGGCT
82224889 TTGGCTCTGG
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 49 1.00
ACGTcount: A:0.09, C:0.31, G:0.42, T:0.18
Consensus pattern (6 bp):
GGGCTC
Found at i:82224895 original size:18 final size:18
Alignment explanation
Indices: 82224824--82224900 Score: 57
Period size: 18 Copynumber: 4.3 Consensus size: 18
82224814 GCGACCGTTT
* *
82224824 GGGCTCAGGCTCAGGCTC
1 GGGCTCGGGCTTAGGCTC
*
82224842 GGGCTCGGGC-TCGAGCTC
1 GGGCTCGGGCTTAG-GCTC
* * * *
82224860 GAGCTTGGGCTCAAGCTC
1 GGGCTCGGGCTTAGGCTC
*
82224878 GGGCTCGGGCTTTGGCTC
1 GGGCTCGGGCTTAGGCTC
*
82224896 TGGCT
1 GGGCT
82224901 TGGCTTCTAT
Statistics
Matches: 43, Mismatches: 14, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
17 1 0.02
18 42 0.98
ACGTcount: A:0.08, C:0.30, G:0.40, T:0.22
Consensus pattern (18 bp):
GGGCTCGGGCTTAGGCTC
Found at i:82225561 original size:14 final size:14
Alignment explanation
Indices: 82225542--82225575 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
82225532 AAATTACATG
82225542 TTAGAATAGTATCA
1 TTAGAATAGTATCA
82225556 TTAGAATAGTATCA
1 TTAGAATAGTATCA
82225570 TTAGAA
1 TTAGAA
82225576 AATAAAATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (14 bp):
TTAGAATAGTATCA
Found at i:82227397 original size:46 final size:46
Alignment explanation
Indices: 82227345--82227520 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
82227335 TATTTGGGCA
* *
82227345 TCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
82227391 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
82227436 CATCCGAGCTCGTTGAGTTGAGTCCGAGCTCAGTTATGGATGCAAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
82227484 -CTCGAGCTCGTTGAGTTAAGTCCGAGTTCGCTTATGG
1 TC-CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82227521 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 5 0.05
45 5 0.05
46 59 0.55
47 28 0.26
48 5 0.05
50 6 0.06
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:82227500 original size:93 final size:93
Alignment explanation
Indices: 82227341--82227513 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
82227331 AGGATATTTG
* * *
82227341 GGCATCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTCGAGTCCGAGCTCACTTATGGATGCAAACGTCCGAGCTCGTTGAG
*
82227406 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTAAGTCCGAGTTCGTGAGATGTAACTA
* *
82227434 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGCTCAGTTATGGATGCAAACG-CTCGAGCTCGTTGA
1 GGCATCCGAGCTCGTTGAGTCGAGTCCGAGCTCACTTATGGATGCAAACGTC-CGAGCTCGTTGA
82227498 GTTAAGTCCGAGTTCG
65 GTTAAGTCCGAGTTCG
82227514 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTCGAGTCCGAGCTCACTTATGGATGCAAACGTCCGAGCTCGTTGAG
TTAAGTCCGAGTTCGTGAGATGTAACTA
Found at i:82230273 original size:30 final size:30
Alignment explanation
Indices: 82230239--82230295 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
82230229 TCTCCTTTCG
*
82230239 TTTTCTTTTTTTTTTCCTTCTCTTTCTTGT
1 TTTTCTATTTTTTTTCCTTCTCTTTCTTGT
*
82230269 TTTTCTATTTTTTTTCTTTCTCTTTCT
1 TTTTCTATTTTTTTTCCTTCTCTTTCT
82230296 CCTTCCCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.77
Consensus pattern (30 bp):
TTTTCTATTTTTTTTCCTTCTCTTTCTTGT
Found at i:82230370 original size:6 final size:6
Alignment explanation
Indices: 82230361--82230416 Score: 96
Period size: 6 Copynumber: 9.5 Consensus size: 6
82230351 CTTCCCACCC
*
82230361 TCTCCT TCTCCT TCTCCT TCTCCT TCTCCT TCTCCT TCTCCT TCTTCT
1 TCTCCT TCTCCT TCTCCT TCTCCT TCTCCT TCTCCT TCTCCT TCTCCT
82230409 TCT-CT TCT
1 TCTCCT TCT
82230417 TTTCTTCAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
5 5 0.10
6 44 0.90
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (6 bp):
TCTCCT
Found at i:82231179 original size:26 final size:26
Alignment explanation
Indices: 82231117--82231185 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 26
82231107 TAACTTGTCT
*
82231117 TTTTCTTTATTTTTTTTCTTTTTTTAA
1 TTTT-TTTATTTTTTTTCTTATTTTAA
* *
82231144 GTTTTATATTTTTTTTCTTATTTT-A
1 TTTTTTTATTTTTTTTCTTATTTTAA
*
82231169 TTTTGTTTATTTATTTT
1 TTTT-TTTATTTTTTTT
82231186 ATTTAATTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
25 4 0.11
26 28 0.80
27 3 0.09
ACGTcount: A:0.13, C:0.04, G:0.03, T:0.80
Consensus pattern (26 bp):
TTTTTTTATTTTTTTTCTTATTTTAA
Found at i:82231184 original size:18 final size:17
Alignment explanation
Indices: 82231116--82231189 Score: 69
Period size: 18 Copynumber: 4.1 Consensus size: 17
82231106 TTAACTTGTC
*
82231116 TTTTTCTTTATTTT-TT
1 TTTTTTTTTATTTTATT
82231132 TTCTTTTTTTAAGTTTTATAT
1 TT-TTTTTTT-A-TTTTAT-T
82231153 TTTTTTTCTTATTTTATT
1 TTTTTTT-TTATTTTATT
*
82231171 TTGTTTATTTATTTTATT
1 TT-TTTTTTTATTTTATT
82231189 T
1 T
82231190 AATTTTTGTT
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
16 2 0.04
17 6 0.12
18 15 0.31
19 14 0.29
20 7 0.14
21 5 0.10
ACGTcount: A:0.14, C:0.04, G:0.03, T:0.80
Consensus pattern (17 bp):
TTTTTTTTTATTTTATT
Found at i:82231194 original size:23 final size:23
Alignment explanation
Indices: 82231161--82231209 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
82231151 ATTTTTTTTC
* *
82231161 TTATTTTA-TTTTGTTTATTTATT
1 TTATTTAATTTTTG-TTATTAATT
82231184 TTATTTAATTTTTGTTATTAATT
1 TTATTTAATTTTTGTTATTAATT
82231207 TTA
1 TTA
82231210 AAAATTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.73
Consensus pattern (23 bp):
TTATTTAATTTTTGTTATTAATT
Found at i:82231286 original size:23 final size:26
Alignment explanation
Indices: 82231228--82231287 Score: 76
Period size: 23 Copynumber: 2.5 Consensus size: 26
82231218 GAAATGTATA
*
82231228 TTTAAATTTTTTTATAATATATATTT
1 TTTAAATTATTTTATAATATATATTT
82231254 TTTAAA--ATTTTA-AATAT-TA-TT
1 TTTAAATTATTTTATAATATATATTT
82231275 TTTAAATTATTTT
1 TTTAAATTATTTT
82231288 TTAAAATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 8 0.26
22 2 0.06
23 10 0.32
24 5 0.16
26 6 0.19
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (26 bp):
TTTAAATTATTTTATAATATATATTT
Found at i:82231291 original size:33 final size:34
Alignment explanation
Indices: 82231228--82231318 Score: 125
Period size: 33 Copynumber: 2.6 Consensus size: 34
82231218 GAAATGTATA
82231228 TTTAAAT-TT-TTTTATAATATATATTTTTTAAAAT
1 TTTAAATATTATTTT-TAA-ATATATTTTTTAAAAT
82231262 TTTAAATATTATTTTTAAAT-TATTTTTTAAAAT
1 TTTAAATATTATTTTTAAATATATTTTTTAAAAT
82231295 TTTAAATATATATTTTTGAAATAT
1 TTTAAATAT-TATTTTT-AAATAT
82231319 GATCTTTCAA
Statistics
Matches: 52, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
33 22 0.42
34 16 0.31
35 9 0.17
36 5 0.10
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (34 bp):
TTTAAATATTATTTTTAAATATATTTTTTAAAAT
Found at i:82231296 original size:21 final size:23
Alignment explanation
Indices: 82231272--82231316 Score: 60
Period size: 20 Copynumber: 2.1 Consensus size: 23
82231262 TTTAAATATT
82231272 ATTTTTAAAT-TAT-TTTTTAAA
1 ATTTTTAAATATATATTTTTAAA
*
82231293 A-TTTTAAATATATATTTTTGAA
1 ATTTTTAAATATATATTTTTAAA
82231315 AT
1 AT
82231317 ATGATCTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
20 8 0.40
21 4 0.20
22 8 0.40
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (23 bp):
ATTTTTAAATATATATTTTTAAA
Found at i:82231316 original size:22 final size:20
Alignment explanation
Indices: 82231274--82231316 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
82231264 TAAATATTAT
82231274 TTTTAAATTATTTTTTAAAA
1 TTTTAAATTATTTTTTAAAA
*
82231294 TTTTAAATATATATTTTTGAAA
1 TTTTAAAT-TAT-TTTTTAAAA
82231316 T
1 T
82231317 ATGATCTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.40
21 3 0.15
22 9 0.45
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
TTTTAAATTATTTTTTAAAA
Found at i:82231431 original size:13 final size:13
Alignment explanation
Indices: 82231398--82231427 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
82231388 TTTAAACATT
82231398 TAAAATTTTTAAA
1 TAAAATTTTTAAA
82231411 TAAAATTTTT-AA
1 TAAAATTTTTAAA
82231423 TAAAA
1 TAAAA
82231428 ATTTAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
TAAAATTTTTAAA
Found at i:82231443 original size:10 final size:10
Alignment explanation
Indices: 82231412--82231467 Score: 58
Period size: 10 Copynumber: 5.5 Consensus size: 10
82231402 ATTTTTAAAT
*
82231412 AAAATTTTTA
1 AAAATATTTA
*
82231422 ATAAAAATTTA
1 A-AAATATTTA
82231433 AAAATATTTA
1 AAAATATTTA
* *
82231443 AACATCTTTA
1 AAAATATTTA
*
82231453 AAAATAATTA
1 AAAATATTTA
82231463 AAAAT
1 AAAAT
82231468 GACAATTTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
10 29 0.78
11 8 0.22
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAATATTTA
Found at i:82231559 original size:13 final size:13
Alignment explanation
Indices: 82231523--82231560 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
82231513 TTTAAACCTT
82231523 TTTAAAAATTTT-
1 TTTAAAAATTTTA
* *
82231535 TATAACAATTTTA
1 TTTAAAAATTTTA
82231548 TTTAAAAATTTTA
1 TTTAAAAATTTTA
82231561 ATTTTTAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
TTTAAAAATTTTA
Found at i:82231595 original size:20 final size:21
Alignment explanation
Indices: 82231570--82231632 Score: 74
Period size: 20 Copynumber: 3.0 Consensus size: 21
82231560 AATTTTTAAA
82231570 TAATATTAAAAAAAT-ATATT
1 TAATATTAAAAAAATAATATT
*
82231590 TAATATTTAAAAAATAATATT
1 TAATATTAAAAAAATAATATT
* *
82231611 TAAAATTTAGAAAAATTAATAT
1 TAATA-TTA-AAAAAATAATAT
82231633 CAAAAATATA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 14 0.39
21 9 0.25
22 2 0.06
23 11 0.31
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
TAATATTAAAAAAATAATATT
Found at i:82231601 original size:21 final size:22
Alignment explanation
Indices: 82231570--82231632 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 22
82231560 AATTTTTAAA
82231570 TAATA-TTAAAAAAAT-ATATT
1 TAATATTTAAAAAAATAATATT
82231590 TAATATTT-AAAAAATAATATT
1 TAATATTTAAAAAAATAATATT
* *
82231611 TAAAATTTAGAAAAATTAATAT
1 TAATATTTA-AAAAAATAATAT
82231633 CAAAAATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.32
21 14 0.38
23 11 0.30
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
TAATATTTAAAAAAATAATATT
Found at i:82231638 original size:23 final size:21
Alignment explanation
Indices: 82231594--82231639 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
82231584 TATATTTAAT
**
82231594 ATTTAAAAAATAATATTTAAA
1 ATTTAAAAAATAATATCAAAA
82231615 ATTTAGAAAAATTAATATCAAAA
1 ATTTA-AAAAA-TAATATCAAAA
82231638 AT
1 AT
82231640 ATATTTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 5 0.24
22 5 0.24
23 11 0.52
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (21 bp):
ATTTAAAAAATAATATCAAAA
Found at i:82231638 original size:35 final size:34
Alignment explanation
Indices: 82231599--82231732 Score: 166
Period size: 36 Copynumber: 3.9 Consensus size: 34
82231589 TTAATATTTA
82231599 AAAAATA-ATATTTAAAA-TTTAGAAAAATTAATATC
1 AAAAATATATATTTAAAATTTTA-AAAAA-TAAT-TC
* *
82231634 AAAAATATATTTTTAAAATTTATAAGAAATAATTTC
1 AAAAATATATATTTAAAATTT-TAAAAAATAA-TTC
* *
82231670 AAATATATATATTTAAAATTTTAAAAAATAATTT
1 AAAAATATATATTTAAAATTTTAAAAAATAATTC
82231704 AAAAATA-ATATTTAAAATTTTAAAAAATA
1 AAAAATATATATTTAAAATTTTAAAAAATA
82231733 TATTATAAAA
Statistics
Matches: 88, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
33 22 0.25
34 8 0.09
35 16 0.18
36 33 0.38
37 7 0.08
38 2 0.02
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (34 bp):
AAAAATATATATTTAAAATTTTAAAAAATAATTC
Found at i:82231791 original size:5 final size:5
Alignment explanation
Indices: 82231781--82231807 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
82231771 AAAATTAATA
82231781 AAAAT AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA
82231808 GAAAAAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:82231814 original size:15 final size:14
Alignment explanation
Indices: 82231770--82231819 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
82231760 TCAAATTTTT
*
82231770 TAAAATTAATAAAAA
1 TAAAA-TAAAAAAAA
82231785 TAAAATAAAATAAAA
1 TAAAATAAAA-AAAA
82231800 TAAAATAAGAAAAAA
1 TAAAATAA-AAAAAA
*
82231815 GAAAA
1 TAAAA
82231820 AACTTAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 4 0.13
15 25 0.81
16 2 0.06
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (14 bp):
TAAAATAAAAAAAA
Found at i:82231830 original size:18 final size:18
Alignment explanation
Indices: 82231780--82231879 Score: 87
Period size: 19 Copynumber: 5.3 Consensus size: 18
82231770 TAAAATTAAT
*
82231780 AAAAA-TAAAATAAAATAA
1 AAAAATTAAAA-AAAAGAA
*
82231798 AATAAAATAAGAAAAAAGAA
1 AA-AAATTAA-AAAAAAGAA
*
82231818 AAAACTTAAAAAAAAGAA
1 AAAAATTAAAAAAAAGAA
82231836 AAAAATTAAAGAAAAAGACA
1 AAAAATTAAA-AAAAAGA-A
*
82231856 AAAGA-TATAAAAAAAGTAA
1 AAAAATTA-AAAAAAAG-AA
82231875 AAAAA
1 AAAAA
82231880 ATTAGAAGCA
Statistics
Matches: 69, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
18 20 0.29
19 28 0.41
20 19 0.28
21 2 0.03
ACGTcount: A:0.79, C:0.02, G:0.07, T:0.12
Consensus pattern (18 bp):
AAAAATTAAAAAAAAGAA
Found at i:82231877 original size:10 final size:9
Alignment explanation
Indices: 82231780--82231881 Score: 78
Period size: 10 Copynumber: 10.7 Consensus size: 9
82231770 TAAAATTAAT
82231780 AAAAATAAA
1 AAAAATAAA
82231789 ATAAAATAAA
1 A-AAAATAAA
82231799 ATAAAATAAGA
1 A-AAAATAA-A
*
82231810 AAAAAGAAA
1 AAAAATAAA
**
82231819 AAACTTAAA
1 AAAAATAAA
*
82231828 AAAAAGAAA
1 AAAAATAAA
*
82231837 AAAATTAAA
1 AAAAATAAA
*
82231846 GAAAAAGACAA
1 -AAAAATA-AA
*
82231857 AAGATATAAA
1 AA-AAATAAA
*
82231867 AAAAGTAAA
1 AAAAATAAA
82231876 AAAAAT
1 AAAAAT
82231882 TAGAAGCAGC
Statistics
Matches: 72, Mismatches: 16, Indels: 10
0.73 0.16 0.10
Matches are distributed among these distances:
9 31 0.43
10 34 0.47
11 7 0.10
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (9 bp):
AAAAATAAA
Found at i:82235668 original size:20 final size:20
Alignment explanation
Indices: 82235643--82235685 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
82235633 TATTAGAATA
82235643 AGGGAATTATTTTCCCAGTT
1 AGGGAATTATTTTCCCAGTT
82235663 AGGGAATTATTTTCCCAGTT
1 AGGGAATTATTTTCCCAGTT
82235683 AGG
1 AGG
82235686 TTATGACTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (20 bp):
AGGGAATTATTTTCCCAGTT
Found at i:82245649 original size:6 final size:6
Alignment explanation
Indices: 82245640--82245664 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
82245630 GAAAAGGAAA
82245640 AAAAAC AAAAAC AAAAAC AAAAAC A
1 AAAAAC AAAAAC AAAAAC AAAAAC A
82245665 GAAAGAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:82260120 original size:19 final size:21
Alignment explanation
Indices: 82260081--82260120 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
82260071 TAATGTTAAA
*
82260081 ATATATATAATATATACATAT
1 ATATATATAATATATAAATAT
82260102 ATATATATAA-A-ATAAATAT
1 ATATATATAATATATAAATAT
82260121 TGAAAAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 1 0.06
21 10 0.56
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (21 bp):
ATATATATAATATATAAATAT
Found at i:82260433 original size:16 final size:16
Alignment explanation
Indices: 82260410--82260450 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 16
82260400 AAGTACCTAT
82260410 TAATAATATTATATAAA
1 TAATAATATT-TATAAA
82260427 T-ATAATAATTTATAAA
1 TAATAAT-ATTTATAAA
82260443 TAATAATA
1 TAATAATA
82260451 GTAATGTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATATTTATAAA
Found at i:82260434 original size:3 final size:3
Alignment explanation
Indices: 82260410--82260691 Score: 90
Period size: 3 Copynumber: 91.7 Consensus size: 3
82260400 AAGTACCTAT
* * * *
82260410 TAA TAA TAT TATA TAA -ATA TAA TAA TTTA TAAA TAA TAA TAG TAA T-G
1 TAA TAA TAA TA-A TAA TA-A TAA TAA -TAA T-AA TAA TAA TAA TAA TAA
* * * *
82260457 TAA TAA TAA TAA TAT TAA GT-A TAA T-A TAAA TAA TATG TACA TAA CAT
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TA-A TA-A TAA TAA
*
82260504 TAA TAA TAA TAA GTAA CAA TAA TAA TAA TAA T-A TAGA -AA TTCAA -AA
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TA-A TAA -T-AA TAA
* *
82260550 -AA GTAA -ACA TAA T-A TAA TGA TAT TAA -AA TAA -AA T-A TACA CTAA
1 TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A -TAA
* * * *
82260593 TAT TTA TAAA TAA TAA TAA TAA TAA TAT TAA GT-A TAG T-A TAAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA
* * * *
82260639 TATG TACA TAA CAG TAA TAA TAA TAA GTAA CAA TAA TAA TAA TAA TAA
1 TA-A TA-A TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA
82260687 TAA TA
1 TAA TA
82260692 TAGAAATTCA
Statistics
Matches: 205, Mismatches: 40, Indels: 68
0.65 0.13 0.22
Matches are distributed among these distances:
2 23 0.11
3 143 0.70
4 35 0.17
5 4 0.02
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:82260455 original size:20 final size:20
Alignment explanation
Indices: 82260441--82260535 Score: 65
Period size: 20 Copynumber: 4.8 Consensus size: 20
82260431 ATAATTTATA
82260441 AATAATAATAGTAATGTAAT
1 AATAATAATAGTAATGTAAT
*
82260461 AATAATAATATTAA-GT-AT
1 AATAATAATAGTAATGTAAT
*
82260479 AAT-ATAAATAAT-ATGTACAT
1 AATAAT-AATAGTAATGTA-AT
* *
82260499 AACATTAATAATAATAA-GTAAC
1 -A-A-TAATAATAGTAATGTAAT
*
82260521 AATAATAATAATAAT
1 AATAATAATAGTAAT
82260536 ATAGAAATTC
Statistics
Matches: 62, Mismatches: 3, Indels: 20
0.73 0.04 0.24
Matches are distributed among these distances:
17 3 0.05
18 12 0.19
19 14 0.23
20 16 0.26
21 2 0.03
22 2 0.03
23 10 0.16
24 3 0.05
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (20 bp):
AATAATAATAGTAATGTAAT
Found at i:82260627 original size:149 final size:151
Alignment explanation
Indices: 82260457--82260740 Score: 473
Period size: 149 Copynumber: 1.9 Consensus size: 151
82260447 AATAGTAATG
*
82260457 TAATAATAATAATATTAAGTATAATATAAATAATATGTACATAACATTAATAATAATAAGTAAC-
1 TAATAATAATAATATTAAGTATAATATAAATAATATGTACATAACAGTAATAATAATAAGTAACA
* *
82260521 AATAATAATAATAATATAGAAATTC-AAAAAAGTAAACATAATATAATGATATTAAAATAAAATA
66 AATAATAATAATAATATAGAAATTCAAAAAAACTAAACATAATATAATAATATTAAAATAAAATA
82260585 TACACTAATATTTATAAATAA
131 TACACTAATATTTATAAATAA
*
82260606 TAATAATAATAATATTAAGTATAGTATAAATAATATGTACATAACAGTAATAATAATAAGTAACA
1 TAATAATAATAATATTAAGTATAATATAAATAATATGTACATAACAGTAATAATAATAAGTAAC-
82260671 ATAATAATAATAATAATAATATAGAAATTCAAAAAAACTAAACATAATATAATAATATTAAAATA
65 ---A-AATAATAATAATAATATAGAAATTCAAAAAAACTAAACATAATATAATAATATTAAAATA
82260736 AAATA
126 AAATA
82260741 ATTTAAAAAA
Statistics
Matches: 124, Mismatches: 4, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
149 62 0.50
155 25 0.20
156 37 0.30
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.31
Consensus pattern (151 bp):
TAATAATAATAATATTAAGTATAATATAAATAATATGTACATAACAGTAATAATAATAAGTAACA
AATAATAATAATAATATAGAAATTCAAAAAAACTAAACATAATATAATAATATTAAAATAAAATA
TACACTAATATTTATAAATAA
Found at i:82260749 original size:16 final size:16
Alignment explanation
Indices: 82260716--82260748 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
82260706 AACTAAACAT
*
82260716 AATATAATAATATTAA
1 AATAAAATAATATTAA
82260732 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
82260747 AA
1 AA
82260749 AATACTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:82265549 original size:25 final size:25
Alignment explanation
Indices: 82265521--82265635 Score: 124
Period size: 25 Copynumber: 4.6 Consensus size: 25
82265511 CTAATACTTG
*
82265521 GCTCTCATGAGTTTCTCGATTAATA
1 GCTCTCATGAGCTTCTCGATTAATA
* * *
82265546 GCTCTCTTGAGCTTCCCAATTAATA
1 GCTCTCATGAGCTTCTCGATTAATA
* * *
82265571 GCTCTCTTGAGCTTCTCGATAAATG
1 GCTCTCATGAGCTTCTCGATTAATA
* *
82265596 GCTCGCATGAGCTTCTCGA-TATACA
1 GCTCTCATGAGCTTCTCGATTA-ATA
*
82265621 GCTCACATGAGCTTC
1 GCTCTCATGAGCTTC
82265636 CCGTTATATG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
24 1 0.01
25 74 0.99
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (25 bp):
GCTCTCATGAGCTTCTCGATTAATA
Found at i:82265624 original size:50 final size:50
Alignment explanation
Indices: 82265521--82265650 Score: 127
Period size: 50 Copynumber: 2.6 Consensus size: 50
82265511 CTAATACTTG
* * * * * *
82265521 GCTCTCATGAGTTTCTCGATTAATAGCTCTCTTGAGCTTCCCAATTAATA
1 GCTCTCATGAGCTTCTCGATAAATGGCTCGCATGAGCTTCCCAATTAACA
* * *
82265571 GCTCTCTTGAGCTTCTCGATAAATGGCTCGCATGAGCTTCTCGA-TATACA
1 GCTCTCATGAGCTTCTCGATAAATGGCTCGCATGAGCTTCCCAATTA-ACA
* * * *
82265621 GCTCACATGAGCTTCCCGTTATATGGCTCG
1 GCTCTCATGAGCTTCTCGATAAATGGCTCG
82265651 GAAGAGCTCC
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
49 2 0.03
50 63 0.97
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (50 bp):
GCTCTCATGAGCTTCTCGATAAATGGCTCGCATGAGCTTCCCAATTAACA
Found at i:82265649 original size:25 final size:25
Alignment explanation
Indices: 82265578--82265672 Score: 91
Period size: 25 Copynumber: 3.8 Consensus size: 25
82265568 ATAGCTCTCT
* *
82265578 TGAGCTTCTCGATAAATGGCTCGCA
1 TGAGCTTCCCGATATATGGCTCGCA
* ** *
82265603 TGAGCTTCTCGATATACAGCTCACA
1 TGAGCTTCCCGATATATGGCTCGCA
* *
82265628 TGAGCTTCCCGTTATATGGCTCGGA
1 TGAGCTTCCCGATATATGGCTCGCA
* * *
82265653 AGAGCTCCCCGTTATATGGC
1 TGAGCTTCCCGATATATGGC
82265673 ATGTATATGT
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.28
Consensus pattern (25 bp):
TGAGCTTCCCGATATATGGCTCGCA
Found at i:82267584 original size:22 final size:23
Alignment explanation
Indices: 82267536--82267585 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
82267526 GAATTGAAAG
*
82267536 TTTAAAACATTTTTATAAAATGA
1 TTTAAAACATTTTTAGAAAATGA
* *
82267559 -TTAAAATATTTTTAGACAA-GA
1 TTTAAAACATTTTTAGAAAATGA
82267580 TTTAAA
1 TTTAAA
82267586 GTTTTAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.42
Consensus pattern (23 bp):
TTTAAAACATTTTTAGAAAATGA
Found at i:82269191 original size:31 final size:31
Alignment explanation
Indices: 82269153--82269211 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
82269143 CAAAAACTAA
82269153 GGAACAATATCAAATTTTACTTAAGTCCTAG
1 GGAACAATATCAAATTTTACTTAAGTCCTAG
82269184 GGAACAATATCAAATTTTACTTAAGTCC
1 GGAACAATATCAAATTTTACTTAAGTCC
82269212 GATATCATGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (31 bp):
GGAACAATATCAAATTTTACTTAAGTCCTAG
Found at i:82274231 original size:20 final size:22
Alignment explanation
Indices: 82274206--82274247 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
82274196 TGTATAGTGG
82274206 AAAATTTTCT-AAGTT-TTGGT
1 AAAATTTTCTAAAGTTCTTGGT
82274226 AAAATTTTCTAAAGTTCTTGGT
1 AAAATTTTCTAAAGTTCTTGGT
82274248 TTGGTTCCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 10 0.50
21 5 0.25
22 5 0.25
ACGTcount: A:0.31, C:0.07, G:0.14, T:0.48
Consensus pattern (22 bp):
AAAATTTTCTAAAGTTCTTGGT
Found at i:82282349 original size:18 final size:18
Alignment explanation
Indices: 82282326--82282361 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
82282316 TCGGTGATAA
82282326 AGTATTTCTGAAAGTATC
1 AGTATTTCTGAAAGTATC
82282344 AGTATTTCTGAAAGTATC
1 AGTATTTCTGAAAGTATC
82282362 TTCGTGGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (18 bp):
AGTATTTCTGAAAGTATC
Found at i:82287983 original size:79 final size:81
Alignment explanation
Indices: 82287847--82288029 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
82287837 TCGAATGATG
* *
82287847 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
82287911 TGTGTGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
82287926 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
82287988 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
82288006 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
82288030 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:82288038 original size:40 final size:40
Alignment explanation
Indices: 82287847--82288031 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
82287837 TCGAATGATG
* * * *
82287847 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
82287887 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82287927 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82287966 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
82288007 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82288032 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 33 0.27
40 81 0.66
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:82288062 original size:79 final size:78
Alignment explanation
Indices: 82287884--82288064 Score: 188
Period size: 79 Copynumber: 2.3 Consensus size: 78
82287874 CTAAGTGACC
* *
82287884 ATATCCGGACTAAGA-TCCGAAGGCATTTGTGTGAGATACTAATTCCGGGCTAAGCCCGAAGGCA
1 ATATCCGG-CTAA-ATTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCA
**
82287948 TTGGTGCGAGTTACT
64 TTGGAACGAGTTACT
* * * * * *
82287963 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGC
1 ATATCC-GGCTAAATTCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGC
*
82288027 ATTTGAACGAG-TAGCT
63 ATTGGAACGAGTTA-CT
82288043 ATATCCGGCTAAATTCCGAAGG
1 ATATCCGGCTAAATTCCGAAGG
82288065 TACGTGATTT
Statistics
Matches: 82, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
78 2 0.02
79 54 0.66
80 26 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
ATATCCGGCTAAATTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATT
GGAACGAGTTACT
Found at i:82288064 original size:39 final size:40
Alignment explanation
Indices: 82287928--82288064 Score: 120
Period size: 40 Copynumber: 3.5 Consensus size: 40
82287918 GATACTAATT
* * **
82287928 CCGGGCT-AAGCCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAATCCCGAAGGCATTTGAACGAGTTACTATAA
* * **
82287966 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAATCCCGAAGGCATTTGAACGAGTTACTATAA
** *
82288007 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATAT
1 CCGGGCTAAATCCCGAAGGCATTTGAACGAGTTA-CTATAA
*
82288047 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAATCCCGAAGG
82288065 TACGTGATTT
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
39 21 0.25
40 60 0.72
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAATCCCGAAGGCATTTGAACGAGTTACTATAA
Found at i:82296012 original size:47 final size:47
Alignment explanation
Indices: 82295945--82296065 Score: 206
Period size: 47 Copynumber: 2.6 Consensus size: 47
82295935 TATTTGAATA
*
82295945 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
82295992 AATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
82296039 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
82296066 TCCCGAAGGG
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
Found at i:82297587 original size:43 final size:43
Alignment explanation
Indices: 82297484--82297628 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
82297474 TTGGTTTTCA
82297484 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATT-
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
82297526 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
82297569 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
82297612 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
82297629 TTGAAATGCA
Statistics
Matches: 102, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
42 42 0.41
43 60 0.59
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:82297645 original size:29 final size:29
Alignment explanation
Indices: 82297610--82297683 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
82297600 GTTGTGAGAT
* *
82297610 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
82297639 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
82297668 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82297684 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:82298117 original size:40 final size:40
Alignment explanation
Indices: 82297994--82298269 Score: 272
Period size: 40 Copynumber: 6.9 Consensus size: 40
82297984 TCGAATGATG
** *
82297994 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
82298034 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
82298074 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
82298114 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
82298154 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
82298194 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
82298234 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
82298270 CGTGTATTCG
Statistics
Matches: 200, Mismatches: 32, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
39 1 0.00
40 181 0.90
41 18 0.09
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:82298210 original size:120 final size:121
Alignment explanation
Indices: 82297994--82298270 Score: 310
Period size: 120 Copynumber: 2.3 Consensus size: 121
82297984 TCGAATGATG
**
82297994 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
* * ** *
82298057 TGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
65 TCGTGCGAGTGACTAAATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGCGATATA
** * *
82298114 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAG-GCAT
* * * * * * * *
82298178 TCGTGCTAGTGA-TATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
65 TCGTGCGAGTGACTAAATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGCGATATA
* * *
82298234 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
82298271 GTGTATTCGG
Statistics
Matches: 131, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
120 105 0.80
121 20 0.15
122 6 0.05
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (121 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTGACTAAATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGCGATATA
Found at i:82302615 original size:47 final size:47
Alignment explanation
Indices: 82302536--82302845 Score: 516
Period size: 47 Copynumber: 6.6 Consensus size: 47
82302526 TATTTGAATA
82302536 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
82302585 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
82302632 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
82302679 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
82302726 AATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
82302772 AATGTGAAAGTGTATATATGTGA-CAGGGCTGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATG
* *
82302819 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
82302846 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
46 51 0.20
47 185 0.74
48 2 0.01
49 12 0.05
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:82306841 original size:29 final size:29
Alignment explanation
Indices: 82306774--82306898 Score: 189
Period size: 29 Copynumber: 4.3 Consensus size: 29
82306764 AAGTCTACAT
* *
82306774 ACATACATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
82306802 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
82306831 ATATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
82306860 ACATTCATATGGCCCATTAGACCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
82306889 ACATTCATAT
1 ACATTCATAT
82306899 ACATGCTTTC
Statistics
Matches: 87, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 21 0.24
29 66 0.76
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:82311282 original size:29 final size:29
Alignment explanation
Indices: 82311250--82311305 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
82311240 ATTCGTATGG
82311250 CCCAGTAGGCCCAAATAACATTCATATCA
1 CCCAGTAGGCCCAAATAACATTCATATCA
* **
82311279 CCCATTAGGCCCAAATCCCATTCATAT
1 CCCAGTAGGCCCAAATAACATTCATAT
82311306 ACATGCTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.34, C:0.34, G:0.09, T:0.23
Consensus pattern (29 bp):
CCCAGTAGGCCCAAATAACATTCATATCA
Found at i:82312937 original size:17 final size:18
Alignment explanation
Indices: 82312915--82312955 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
82312905 GTGAAAAATC
*
82312915 ATATTTCTATTGATC-TT
1 ATATTTCCATTGATCTTT
82312932 ATATTTCCATTGATCTTT
1 ATATTTCCATTGATCTTT
82312950 ATATTT
1 ATATTT
82312956 TACATATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.24, C:0.12, G:0.05, T:0.59
Consensus pattern (18 bp):
ATATTTCCATTGATCTTT
Found at i:82315410 original size:6 final size:6
Alignment explanation
Indices: 82315399--82315425 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
82315389 GCAGTAACCA
82315399 AAAAAT AAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAA
82315426 TCTAAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:82329801 original size:25 final size:25
Alignment explanation
Indices: 82329773--82329821 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
82329763 ATATCACTTG
*
82329773 TCATGT-ATCATCATTTTATTTCATT
1 TCATGTAAT-ATCATTTTATGTCATT
*
82329798 TCATGTAATATTATTTTATGTCAT
1 TCATGTAATATCATTTTATGTCAT
82329822 ATTTCTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (25 bp):
TCATGTAATATCATTTTATGTCATT
Found at i:82334361 original size:18 final size:19
Alignment explanation
Indices: 82334338--82334378 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
82334328 CATTCACATC
82334338 TTTTCTCTCTTCTCT-CCA
1 TTTTCTCTCTTCTCTGCCA
*
82334356 TTTTCTCTCTTCTTTGCCA
1 TTTTCTCTCTTCTCTGCCA
82334375 TTTT
1 TTTT
82334379 AAATTCTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.05, C:0.32, G:0.02, T:0.61
Consensus pattern (19 bp):
TTTTCTCTCTTCTCTGCCA
Found at i:82335545 original size:37 final size:37
Alignment explanation
Indices: 82335403--82335547 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
82335393 GCTCAGACGA
* * * *
82335403 AATCTCCACACGAAGTTATCGGGTCTTACCCAGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
82335440 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
82335477 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
82335514 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
82335548 ATATATTTCC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:82335832 original size:50 final size:50
Alignment explanation
Indices: 82335697--82335832 Score: 229
Period size: 50 Copynumber: 2.7 Consensus size: 50
82335687 CATCGCCTAC
* *
82335697 ATATTTCACACT-AGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATGCATATCTCATATAT
82335747 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
*
82335797 ATATTTCACATTGACCATTCAGCTTTACCACATATG
1 ATATTTCACATTGACCATTCGGCTTTACCACATATG
82335833 AATGTTCATA
Statistics
Matches: 82, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
50 81 0.99
51 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATATAT
Found at i:82335907 original size:22 final size:22
Alignment explanation
Indices: 82335879--82336001 Score: 74
Period size: 22 Copynumber: 5.3 Consensus size: 22
82335869 GCTCACATTC
82335879 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
82335901 ATCACATATATG-CATGCTC-ACATT
1 ATCACAT-T-GGCCAT--TCGGCCTT
82335925 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
82335948 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
82335972 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
82335995 ATCACAT
1 ATCACAT
82336002 ATATGCATGT
Statistics
Matches: 75, Mismatches: 12, Indels: 28
0.65 0.10 0.24
Matches are distributed among these distances:
22 26 0.35
23 15 0.20
24 15 0.20
25 19 0.25
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:82335920 original size:47 final size:47
Alignment explanation
Indices: 82335866--82336026 Score: 304
Period size: 47 Copynumber: 3.4 Consensus size: 47
82335856 CCATTCGGCT
82335866 CATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATG
1 CATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATG
82335913 CATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATG
1 CATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATG
*
82335960 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATG
1 CATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATG
*
82336007 CATGTTCACATTCATCACAT
1 CATGCTCACATTCATCACAT
82336027 AAAATCCTAA
Statistics
Matches: 113, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 113 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
CATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATG
Found at i:82336058 original size:94 final size:91
Alignment explanation
Indices: 82335865--82336047 Score: 228
Period size: 94 Copynumber: 2.0 Consensus size: 91
82335855 GCCATTCGGC
*
82335865 TCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCA
1 TCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCA
** * * *
82335930 CATTGGCCATTCGGCCTTATCACATATAT
66 CATT-GAAAAT--GCCTAATCAAATATAT
* *
82335959 GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 TCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCA
82336024 CA-T-AAAAT-CCTAAATCAAAATATA
66 CATTGAAAATGCCT-AATC-AAATATA
82336048 AATTTTCATG
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
88 3 0.04
89 3 0.04
90 6 0.08
91 2 0.03
93 1 0.01
94 64 0.81
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.32
Consensus pattern (91 bp):
TCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCA
CATTGAAAATGCCTAATCAAATATAT
Found at i:82340145 original size:24 final size:25
Alignment explanation
Indices: 82340113--82340170 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
82340103 AATTTTTCTC
*
82340113 CTAAATTTT-AATTTATTCAATTAT
1 CTAATTTTTCAATTTATTCAATTAT
*
82340137 CTAATTTTTCAATTTATTGAATTAT
1 CTAATTTTTCAATTTATTCAATTAT
82340162 -TAATATTTT
1 CTAAT-TTTT
82340171 TTATTAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 12 0.40
25 18 0.60
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (25 bp):
CTAATTTTTCAATTTATTCAATTAT
Found at i:82343471 original size:18 final size:19
Alignment explanation
Indices: 82343448--82343488 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
82343438 CATTCACATC
82343448 TTTTCTCTCTTC-TCTCCA
1 TTTTCTCTCTTCTTCTCCA
*
82343466 TTTTCTCTCTTCTTTTCCA
1 TTTTCTCTCTTCTTCTCCA
82343485 TTTT
1 TTTT
82343489 AAATTCTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.05, C:0.32, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTTCTCTCTTCTTCTCCA
Found at i:82349398 original size:55 final size:54
Alignment explanation
Indices: 82349320--82349576 Score: 237
Period size: 55 Copynumber: 4.8 Consensus size: 54
82349310 ATTAGAGTTT
82349320 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGGTTTCTAAGGC
* * * * *
82349375 AAGGATACCATGTAAGATCATGCCAAGACATGGCATTGATAAGTTATTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGGT-TTCTAAGGC
* * * * *
82349430 AAAGG-TCCCATGAAAGACCATGCCAAGGCATGGCATTGGTGA-G-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGGTTTC-TAAGGC
** *
82349483 AAGGATACCATGTAAGACCATATCGAGACATGGGAA-TGGTAA-GTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACAT-GGAATTGGTAAGGTTTCTAAGGC
** * *
82349532 AAGGATACCACATAAGACCAT-CACAAGTCATGGAAATGGTAAGGT
1 AAGGATACCATGTAAGACCATGC-CAAGACATGGAATTGGTAAGGT
82349577 ACCCGTGTAT
Statistics
Matches: 167, Mismatches: 26, Indels: 23
0.77 0.12 0.11
Matches are distributed among these distances:
48 4 0.02
49 31 0.19
50 2 0.01
52 8 0.05
53 32 0.19
54 15 0.09
55 71 0.43
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGGTTTCTAAGGC
Found at i:82349526 original size:108 final size:110
Alignment explanation
Indices: 82349327--82349527 Score: 273
Period size: 108 Copynumber: 1.8 Consensus size: 110
82349317 TTTAAGGATA
*
82349327 CCATGTAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGAAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* * *
82349392 TCATGCCAAGACATGGCATTGATAAGTTATTATAAGGCAAAGGTC
66 CCATACCAAGACATGGCAATGATAAGTTATTATAAGGCAAAGGTC
* * *
82349437 CCATGAAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGAAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* * * *
82349499 ACCATATCGAGACATGGGAATGGTAAGTT
65 ACCATACCAAGACATGGCAATGATAAGTT
82349528 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.57
109 7 0.09
110 24 0.30
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGAAAGACCATGCCAAGACATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATACCAAGACATGGCAATGATAAGTTATTATAAGGCAAAGGTC
Found at i:82349777 original size:16 final size:16
Alignment explanation
Indices: 82349756--82349786 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82349746 ATAAATTTGA
82349756 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
82349772 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
82349787 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:82353070 original size:41 final size:41
Alignment explanation
Indices: 82353013--82353093 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
82353003 CTTAACAAGG
82353013 TAAGAGTAAAAAACAAGTATCCGCTGCCTAGAATTGATGAA
1 TAAGAGTAAAAAACAAGTATCCGCTGCCTAGAATTGATGAA
82353054 TAAGAGTAAAAAACAAGTATCCGCTGCCTAGAATTGATGA
1 TAAGAGTAAAAAACAAGTATCCGCTGCCTAGAATTGATGA
82353094 TTTGTTTGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.43, C:0.15, G:0.20, T:0.22
Consensus pattern (41 bp):
TAAGAGTAAAAAACAAGTATCCGCTGCCTAGAATTGATGAA
Found at i:82357622 original size:37 final size:37
Alignment explanation
Indices: 82357561--82357639 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
82357551 TTATTACGAA
* * * *
82357561 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCAG
* *
82357598 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCAG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCAG
82357635 GTCTT
1 GTCTT
82357640 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCAG
Found at i:82357836 original size:47 final size:47
Alignment explanation
Indices: 82357758--82358110 Score: 589
Period size: 47 Copynumber: 7.5 Consensus size: 47
82357748 CCCTTCGGGA
* * * * * * *
82357758 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82357805 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82357852 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82357899 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82357946 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82357993 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82358040 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82358087 CTTATCACATATATACACTTTCAC
1 CTTATCACATATATACACTTTCAC
82358111 GTATACACAC
Statistics
Matches: 288, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 288 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82360914 original size:27 final size:26
Alignment explanation
Indices: 82360855--82360934 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
82360845 ATTTGCTTTG
** * *
82360855 TGTATTATAGATTTTAAAATGCTTTA
1 TGTATTATTCATTTTAAATTGTTTTA
** *
82360881 TACATTATTTATTTTAAACTTGTTTTA
1 TGTATTATTCATTTTAAA-TTGTTTTA
82360908 TGTATTATTCATTTTAAATTGTTTTA
1 TGTATTATTCATTTTAAATTGTTTTA
82360934 T
1 T
82360935 TGTTTACTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 23 0.52
27 21 0.48
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.57
Consensus pattern (26 bp):
TGTATTATTCATTTTAAATTGTTTTA
Found at i:82368488 original size:75 final size:74
Alignment explanation
Indices: 82368375--82368764 Score: 347
Period size: 73 Copynumber: 5.1 Consensus size: 74
82368365 TTCATTTCTG
* *
82368375 TTTTCAAAAAAATCAACTCCTAATTGCGAGAGGAGAGTTGAGCCTCGGGGCACGCTGAGGTATTT
1 TTTTCAAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTT
82368440 TCAATTATTGT
65 TCAATT-TTGT
* * * * *
82368451 TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAAGCTGAGATATTTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
82368516 CAATTTCTGT
66 CAATTT-TGT
* * * *
82368526 TTTTC--AAAATTCAACTCATATTGCGAAAGCTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
82368589 CAATTTTTGT
66 CAA-TTTTGT
* * ** * **
82368599 GTTTTAATTTATTTTTCAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAAGTCACATT
1 -TTTTCA---A------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
* *
82368664 GAGGTATTTTTAA-TTT-A
56 GAGGTATTTTCAATTTTGT
** * * * **
82368681 TCATAAAAAAAATCAACTCATATTGCGAGGGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC--GCTGAGGTATT
*
82368746 TTCAATTTTTGC
64 TTCAA-TTTTGT
82368758 TTTTCAA
1 TTTTCAA
82368765 TTTCTGCTTT
Statistics
Matches: 251, Mismatches: 44, Indels: 37
0.76 0.13 0.11
Matches are distributed among these distances:
72 39 0.16
73 56 0.22
74 21 0.08
75 51 0.20
76 22 0.09
77 4 0.02
78 1 0.00
81 4 0.02
83 3 0.01
85 50 0.20
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (74 bp):
TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
CAATTTTGT
Found at i:82368580 original size:73 final size:74
Alignment explanation
Indices: 82368364--82368764 Score: 328
Period size: 75 Copynumber: 5.3 Consensus size: 74
82368354 TATGTGGATG
* *
82368364 TTTC-ATTTCTG-TTTTCAAAAAAATCAACTCCTAATTGCGAGAGGAGAGTTGAGCCTCGGGGCA
1 TTTCAATTTCTGTTTTTC-AAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCGGGGCA
82368427 CGCTGAGGTAT
64 CGCTGAGGTAT
* * *
82368438 TTTCAATTAT-TGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTCAATT-TCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCA
* *
82368502 AGCTGAGATAT
64 CGCTGAGGTAT
* * *
82368513 TTTCAATTTCTGTTTTTC-AAAATTCAACTCATATTGCGAAAGCTGAGTTGAGCCTCGGGGCACG
1 TTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
82368577 CTGAGGTAT
66 CTGAGGTAT
* * * *
82368586 TGTCAATTTTTGTGTTTTAATTTATTTTTCAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGC
1 TTTCAA--TTTCTG-TTT--TTCA------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
** * **
82368651 CTCAAGTCACATTGAGGTAT
55 CTCGGGGCACGCTGAGGTAT
* * ** ** * * **
82368671 TTTTAA-TT-TATCATAAAAAAAATCAACTCATATTGCGAGGGGTGAGTTGAGCCTTGGCTCACA
1 TTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC-
82368734 TGCTGAGGTAT
65 -GCTGAGGTAT
* *
82368745 TTTCAATTTTTGCTTTTCAA
1 TTTCAATTTCTGTTTTTCAA
82368765 TTTCTGCTTT
Statistics
Matches: 258, Mismatches: 49, Indels: 38
0.75 0.14 0.11
Matches are distributed among these distances:
72 39 0.15
73 53 0.21
74 18 0.07
75 63 0.24
76 27 0.10
78 4 0.02
80 1 0.00
81 1 0.00
82 2 0.01
85 50 0.19
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (74 bp):
TTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
CTGAGGTAT
Found at i:82368643 original size:158 final size:161
Alignment explanation
Indices: 82368457--82368850 Score: 449
Period size: 158 Copynumber: 2.5 Consensus size: 161
82368447 TTGTTTGTCA
*
82368457 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAAGCTGAGATATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAAGCTGAGGTATTTTCAATTT
* * * *
82368522 CTGTTTTTCAAAATTCAACTCATATTGCGAAAGCTGAGTTGAGCCTCGGGGCAC-GCTGAGGTAT
66 ATGTTTTTAAAAAATCAACTCATATTGCGAAAGCTGAGTTGAGCCTCGGCGCACAGCTGAGGTAT
*
82368586 TGTCAATTTTTG-TGTTTTAATTTAT-TTTTC
131 TGTCAATTTTTGCT-TTTCAATTTATCTTTTC
* * * * *
82368616 -AAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAAGTCACA-TTGAGGTATTTTTAATT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA-AGCTGAGGTATTTTCAATT
** ** ** * * *
82368679 TAT-CATAAAAAAAATCAACTCATATTGCGAGGGGTGAGTTGAGCCTTGGCTCACATGCTGAGGT
65 TATGTTTTTAAAAAATCAACTCATATTGCGAAAGCTGAGTTGAGCCTCGGCGCACA-GCTGAGGT
* *
82368743 ATTTTCAATTTTTGCTTTTCAATTTCTGCTTTTC
129 ATTGTCAATTTTTGCTTTTCAATTTAT-CTTTTC
* * * * *
82368777 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGGCACGCTAAGGTATTTTCAATT
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAAGCTGAGGTATTTTCAATT
*
82368842 AATGTTTTT
65 TATGTTTTT
82368851 TTCAATTTAT
Statistics
Matches: 189, Mismatches: 36, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
157 39 0.21
158 57 0.30
159 31 0.16
160 1 0.01
161 5 0.03
163 55 0.29
164 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.35
Consensus pattern (161 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAAGCTGAGGTATTTTCAATTT
ATGTTTTTAAAAAATCAACTCATATTGCGAAAGCTGAGTTGAGCCTCGGCGCACAGCTGAGGTAT
TGTCAATTTTTGCTTTTCAATTTATCTTTTC
Found at i:82368733 original size:72 final size:73
Alignment explanation
Indices: 82368616--82368753 Score: 199
Period size: 72 Copynumber: 1.9 Consensus size: 73
82368606 TTTATTTTTC
*
82368616 AAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAAGTCACAT-TGAGGTATTTTTAATTT
1 AAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAAGTCACATCTGAGGTATTTTCAATTT
82368680 ATCATAAA
66 ATCATAAA
* * **
82368688 AAAAATCAACTCATATTGCGAGGGGTGAGTTGAGCCT-TGGCTCACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAAG-TCACAT-CTGAGGTATTTTCAAT
82368752 TT
64 TT
82368754 TTGCTTTTCA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
71 1 0.02
72 41 0.71
74 16 0.28
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (73 bp):
AAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCAAGTCACATCTGAGGTATTTTCAATTT
ATCATAAA
Found at i:82368763 original size:14 final size:14
Alignment explanation
Indices: 82368744--82368778 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
82368734 TGCTGAGGTA
*
82368744 TTTTCAATTTTTGC
1 TTTTCAATTTCTGC
82368758 TTTTCAATTTCTGC
1 TTTTCAATTTCTGC
82368772 TTTTCAA
1 TTTTCAA
82368779 AAAAATCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.17, G:0.06, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGC
Found at i:82368866 original size:16 final size:16
Alignment explanation
Indices: 82368833--82368866 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
82368823 CGCTAAGGTA
*
82368833 TTTTCAATTAATGTTT
1 TTTTCAATTAATGCTT
*
82368849 TTTTCAATTTATGCTT
1 TTTTCAATTAATGCTT
82368865 TT
1 TT
82368867 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.09, G:0.06, T:0.65
Consensus pattern (16 bp):
TTTTCAATTAATGCTT
Found at i:82369015 original size:89 final size:90
Alignment explanation
Indices: 82368686--82369015 Score: 377
Period size: 89 Copynumber: 3.7 Consensus size: 90
82368676 ATTTATCATA
*
82368686 AAAAAAATCAACTCATATTGCGAGGGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAA
** * *
82368751 TTTTTGCTTTTCAATTTCTGCTTTTC
66 AATCTGCTTTTCAATTTATGC-TTTC
** *
82368777 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCGGGGCAC--GCTAAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACATGCTGAGGTATTTTCA
* **
82368839 ATTAATGTTTTTTTCAATTTATGCTTTTC
65 A--AATCTGCTTTTCAATTTATGC-TTTC
* * *
82368868 --AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCT-GAGGTATTTTCA
* *
82368930 AAATCTGCTTTTCAAATTAAG-TTTC
65 AAATCTGCTTTTCAATTTATGCTTTC
* * * *
82368955 AAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCTCACGTGCTGAGCTATTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTT
82369016 CTATCTTGAT
Statistics
Matches: 203, Mismatches: 26, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
87 4 0.02
89 119 0.59
90 7 0.03
91 73 0.36
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (90 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGGTATTTTCAA
AATCTGCTTTTCAATTTATGCTTTC
Found at i:82371079 original size:27 final size:26
Alignment explanation
Indices: 82371020--82371099 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
82371010 ATTTGCTTTG
** * *
82371020 TGTATTATAGATTTTAAAATGCTTTA
1 TGTATTATTCATTTTAAATTGTTTTA
** *
82371046 TACATTATTTATTTTAAACTTGTTTTA
1 TGTATTATTCATTTTAAA-TTGTTTTA
82371073 TGTATTATTCATTTTAAATTGTTTTA
1 TGTATTATTCATTTTAAATTGTTTTA
82371099 T
1 T
82371100 TGTTTACTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 23 0.52
27 21 0.48
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.57
Consensus pattern (26 bp):
TGTATTATTCATTTTAAATTGTTTTA
Found at i:82373913 original size:55 final size:53
Alignment explanation
Indices: 82373851--82374105 Score: 211
Period size: 55 Copynumber: 4.8 Consensus size: 53
82373841 CATTAGGGTT
*
82373851 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * *
82373906 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * * ** * *
82373961 AAATG-TCCCATGTAAAACCATCCCAAGGTATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
* * * *
82374014 AAGGATACCATGTAGGACCATGTCGAGACATGGAAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
* *
82374063 AAGGATACCACGTAAGACCAT-CACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGC-CAAGACATGG-AATTGGTAAG
82374106 GTACCCCGTG
Statistics
Matches: 160, Mismatches: 32, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
49 34 0.21
50 2 0.01
52 6 0.04
53 36 0.22
54 11 0.07
55 68 0.43
56 3 0.02
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:82374057 original size:108 final size:110
Alignment explanation
Indices: 82373858--82374058 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
82373848 GTTAAGGATA
* *
82373858 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAAACCATCCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
82373923 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAATGTC
66 CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAATGTC
* * * *
82373968 CCATGTAAAACCATCCCAAGGTATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAGG
1 CCATGTAAAACCATCCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
82374030 ACCATGTCGAGACATGGAAATGGTAAGTT
65 ACCATGTCAAGACATGGAAATGATAAGTT
82374059 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.59
109 7 0.09
110 23 0.29
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAAACCATCCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGAAATGATAAGTTACTATAAGGCAAATGTC
Found at i:82379806 original size:3 final size:3
Alignment explanation
Indices: 82379798--82379827 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
82379788 TTTTCATTTA
82379798 AAT AAT AAT AAT AAT AAT AAT AAT AGAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA
82379828 ACGCGATGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:82379973 original size:13 final size:14
Alignment explanation
Indices: 82379951--82379988 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
82379941 TTAAAACTTT
82379951 AAAT-TATTTTTAC
1 AAATATATTTTTAC
*
82379964 AAA-ATATTTTTAT
1 AAATATATTTTTAC
82379977 AAATATATTTTT
1 AAATATATTTTT
82379989 TATATAATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 14 0.64
14 8 0.36
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (14 bp):
AAATATATTTTTAC
Found at i:82382327 original size:50 final size:52
Alignment explanation
Indices: 82382263--82382380 Score: 168
Period size: 50 Copynumber: 2.3 Consensus size: 52
82382253 TTAATAAAGT
* *
82382263 CATGCATTATGTAACTCTCATGTTAATT-AAGTTTGCATCA-TAAATGATGA
1 CATGCATTATGTAACTCCCATGTTAATTAAAGTTTGCATCATTAAATGAAGA
* * *
82382313 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTAAGC
1 CATGCATTATGTAACTCCCATGTTAATTAAAGTTTGCATCATTAAATGAAGA
*
82382365 CATGCATTAAGTAACT
1 CATGCATTATGTAACT
82382381 TATTTGTTCA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
50 26 0.43
51 12 0.20
52 22 0.37
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (52 bp):
CATGCATTATGTAACTCCCATGTTAATTAAAGTTTGCATCATTAAATGAAGA
Found at i:82382897 original size:20 final size:20
Alignment explanation
Indices: 82382874--82382916 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
82382864 CACACGCTCG
82382874 TGTGCTTTGGGACACCCCCA
1 TGTGCTTTGGGACACCCCCA
*
82382894 TGTGCTTTGGGACACTCCCA
1 TGTGCTTTGGGACACCCCCA
82382914 TGT
1 TGT
82382917 CCCATACCCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.14, C:0.30, G:0.26, T:0.30
Consensus pattern (20 bp):
TGTGCTTTGGGACACCCCCA
Found at i:82388481 original size:46 final size:46
Alignment explanation
Indices: 82388428--82388682 Score: 329
Period size: 46 Copynumber: 5.5 Consensus size: 46
82388418 AGATATTTGG
*
82388428 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
82388474 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*
82388520 ACATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * * * * * *
82388566 ACGTTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA
*
82388612 GGCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 -GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
*
82388660 CGC-T-CGAGCTCGTTGAGTTGAGT
1 -GCATCCGAACTCGTTGAGTTGAGT
82388683 TGAGTCTGAG
Statistics
Matches: 182, Mismatches: 21, Indels: 12
0.85 0.10 0.06
Matches are distributed among these distances:
45 1 0.01
46 143 0.79
47 34 0.19
48 4 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:82406294 original size:46 final size:46
Alignment explanation
Indices: 82406226--82406354 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 46
82406216 TGTAACCCGC
* * *
82406226 CCATAAGCGAACTCGGATTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
*
82406272 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
82406318 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
82406355 TGCTCAATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 2 0.03
46 76 0.97
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Done.