Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 253 of 325
Found at i:82417685 original size:16 final size:17
Alignment explanation
Indices: 82417664--82417738 Score: 84
Period size: 16 Copynumber: 4.4 Consensus size: 17
82417654 CAAAATATCA
*
82417664 AAAAAAAATTGAAG-TG
1 AAAAAAATTTGAAGTTG
*
82417680 AAAAAAATTTGAA--AG
1 AAAAAAATTTGAAGTTG
82417695 AAAAATAATTTGAAGTTG
1 AAAAA-AATTTGAAGTTG
82417713 AAAAAATATTTTGAAGTTG
1 AAAAAA-A-TTTGAAGTTG
82417732 AAAAAAA
1 AAAAAAA
82417739 ATTGTAAAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
15 6 0.12
16 20 0.39
17 1 0.02
18 8 0.16
19 16 0.31
ACGTcount: A:0.60, C:0.00, G:0.15, T:0.25
Consensus pattern (17 bp):
AAAAAAATTTGAAGTTG
Found at i:82417719 original size:19 final size:19
Alignment explanation
Indices: 82417695--82417741 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
82417685 AATTTGAAAG
82417695 AAAAATAATTTGAAGTTGA
1 AAAAATAATTTGAAGTTGA
*
82417714 AAAAATATTTTGAAGTTGA
1 AAAAATAATTTGAAGTTGA
82417733 AAAAA-AATT
1 AAAAATAATT
82417742 GTAAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 3 0.12
19 23 0.88
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (19 bp):
AAAAATAATTTGAAGTTGA
Found at i:82418573 original size:23 final size:21
Alignment explanation
Indices: 82418517--82418573 Score: 51
Period size: 23 Copynumber: 2.6 Consensus size: 21
82418507 GTAACGAAAG
**
82418517 AATAAGAGAAAAGGAAATTGA
1 AATAAGAGAAAACAAAATTGA
* *
82418538 AAGAAAAGAAAAACAAGAATTGA
1 AATAAGAG-AAAACAA-AATTGA
82418561 TAATAAGAGAAAA
1 -AATAAGAGAAAA
82418574 TGATCAAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
21 6 0.22
22 5 0.19
23 10 0.37
24 6 0.22
ACGTcount: A:0.67, C:0.02, G:0.19, T:0.12
Consensus pattern (21 bp):
AATAAGAGAAAACAAAATTGA
Found at i:82418625 original size:18 final size:20
Alignment explanation
Indices: 82418580--82418625 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
82418570 AAAATGATCA
*
82418580 AAAAATAAAAGAAGTTGAGAG
1 AAAAA-AAAAGAAATTGAGAG
82418601 AAGAAAAAAAGAAATT-AGAG
1 AA-AAAAAAAGAAATTGAGAG
82418621 AAAAA
1 AAAAA
82418626 GAAATTGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 3 0.13
20 6 0.26
21 11 0.48
22 3 0.13
ACGTcount: A:0.70, C:0.00, G:0.20, T:0.11
Consensus pattern (20 bp):
AAAAAAAAAGAAATTGAGAG
Found at i:82418626 original size:15 final size:16
Alignment explanation
Indices: 82418606--82418664 Score: 66
Period size: 16 Copynumber: 3.6 Consensus size: 16
82418596 GAGAGAAGAA
*
82418606 AAAAAGAAATT-AGAG
1 AAAAAGAAATTGAAAG
82418621 AAAAAGAAATTGAAAG
1 AAAAAGAAATTGAAAG
*
82418637 AAAAAGAAAGCTTAAAAG
1 AAAAAGAAA--TTGAAAG
82418655 AAAAGAGAAA
1 AAAA-AGAAA
82418665 GAAAAAGAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
15 11 0.29
16 12 0.32
18 10 0.26
19 5 0.13
ACGTcount: A:0.69, C:0.02, G:0.19, T:0.10
Consensus pattern (16 bp):
AAAAAGAAATTGAAAG
Found at i:82420672 original size:50 final size:52
Alignment explanation
Indices: 82420612--82420730 Score: 170
Period size: 50 Copynumber: 2.3 Consensus size: 52
82420602 TTAATAAAGT
* * *
82420612 CATGCTTTATGTAACTCTCATGTTAGTT-AAGTTTGCATCA-TAAATTATGA
1 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTAAGA
* *
82420662 CATGGATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTAAGC
1 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTAAGA
*
82420714 CATGCATTAAGTAACTC
1 CATGCATTATGTAACTC
82420731 ATTTGTTCAT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 25 0.42
51 12 0.20
52 23 0.38
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (52 bp):
CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTAAGA
Found at i:82422161 original size:27 final size:27
Alignment explanation
Indices: 82422088--82422149 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
82422078 CGCATTTCAA
*
82422088 TCATTTTACCTCATAAGGGCAAAACAG
1 TCATTTTACCTCATAAGGGTAAAACAG
*
82422115 TCATTTTACCTCATGAGGGTAAAACAG
1 TCATTTTACCTCATAAGGGTAAAACAG
82422142 TCATTTTA
1 TCATTTTA
82422150 TTGATTAAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (27 bp):
TCATTTTACCTCATAAGGGTAAAACAG
Found at i:82427817 original size:14 final size:13
Alignment explanation
Indices: 82427789--82427829 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
82427779 CTGGCCCGCC
82427789 TATATTAATTTTT
1 TATATTAATTTTT
*
82427802 TATATTATTATTTT
1 TATATTAAT-TTTT
82427816 TATA-TAATTTTT
1 TATATTAATTTTT
82427828 TA
1 TA
82427830 AAAAATGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 6 0.24
13 11 0.44
14 8 0.32
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TATATTAATTTTT
Found at i:82428101 original size:28 final size:29
Alignment explanation
Indices: 82428048--82428103 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
82428038 AGTGAGATAG
*
82428048 TAGCAAAATAATGAAAAACAATAAGAAAA
1 TAGCAAAAAAATGAAAAACAATAAGAAAA
* *
82428077 TAGCAAAAAAAT-AAAAATAGTAAGAAA
1 TAGCAAAAAAATGAAAAACAATAAGAAA
82428104 CCATTTTGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.70, C:0.05, G:0.11, T:0.14
Consensus pattern (29 bp):
TAGCAAAAAAATGAAAAACAATAAGAAAA
Found at i:82435458 original size:21 final size:21
Alignment explanation
Indices: 82435432--82435475 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
82435422 ATGTCATGCA
82435432 TTATACTAGAG-ACAATATAGC
1 TTATACTAGAGCA-AATATAGC
82435453 TTATACTAGAGCAAATATAGC
1 TTATACTAGAGCAAATATAGC
82435474 TT
1 TT
82435476 TTGTAGTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (21 bp):
TTATACTAGAGCAAATATAGC
Found at i:82440336 original size:16 final size:17
Alignment explanation
Indices: 82440311--82440345 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
82440301 ATTATTATTA
*
82440311 TTTTTACTTTTTTTTTC
1 TTTTTACTTTTCTTTTC
82440328 TTTTT-CTTTTCTTTTC
1 TTTTTACTTTTCTTTTC
82440344 TT
1 TT
82440346 AAGAATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTTACTTTTCTTTTC
Found at i:82447114 original size:42 final size:41
Alignment explanation
Indices: 82447002--82447123 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 41
82446992 TACCATACCA
* * **
82447002 ATGCCATATCCCAGATATGGTCTTACATGTAATCTTGTATCG
1 ATGCCATATCTCAGATATGGTCTTACA-CTAATCTCATATCG
* *
82447044 ATGCCAATAGCTCAGCTATGGTCTTACACTAAGTCTCATATCG
1 ATGCC-ATATCTCAGATATGGTCTTACACTAA-TCTCATATCG
*
82447087 ATGCCATATCTCAAATATGGTCTTACACATAATCTCA
1 ATGCCATATCTCAGATATGGTCTTACAC-TAATCTCA
82447124 GTAACCCTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 33 0.49
43 35 0.51
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.33
Consensus pattern (41 bp):
ATGCCATATCTCAGATATGGTCTTACACTAATCTCATATCG
Found at i:82449258 original size:21 final size:21
Alignment explanation
Indices: 82449219--82449258 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
82449209 AAATATGGAC
* **
82449219 AAATTGAGATTGTGTAAATTG
1 AAATTGAAATTGTAAAAATTG
82449240 AAATTGAAATTGTAAAAAT
1 AAATTGAAATTGTAAAAAT
82449259 AAACAGAGTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.35
Consensus pattern (21 bp):
AAATTGAAATTGTAAAAATTG
Found at i:82457133 original size:20 final size:20
Alignment explanation
Indices: 82457108--82457145 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
82457098 ATACTTTATT
*
82457108 TTTTGTTAAGTATCGATAAA
1 TTTTGTTAAGTATAGATAAA
*
82457128 TTTTGTTGAGTATAGATA
1 TTTTGTTAAGTATAGATA
82457146 GATTCACAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.18, T:0.47
Consensus pattern (20 bp):
TTTTGTTAAGTATAGATAAA
Found at i:82464647 original size:25 final size:25
Alignment explanation
Indices: 82464613--82464663 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
82464603 CTAATACGCT
82464613 TCTGCTCATCTAGCAGTGAATTTCC
1 TCTGCTCATCTAGCAGTGAATTTCC
82464638 TCTGCTCATCTAGCAGTGAATTTCC
1 TCTGCTCATCTAGCAGTGAATTTCC
82464663 T
1 T
82464664 ATCTCGTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.27, G:0.16, T:0.37
Consensus pattern (25 bp):
TCTGCTCATCTAGCAGTGAATTTCC
Found at i:82469729 original size:46 final size:46
Alignment explanation
Indices: 82469679--82469854 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
82469669 TGGTTGAGCA
82469679 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
82469725 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
82469770 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
82469818 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82469855 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 63 0.58
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82469835 original size:93 final size:93
Alignment explanation
Indices: 82469676--82469846 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
82469666 GGATGGTTGA
* *
82469676 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82469741 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
82469769 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82469834 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82469847 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:82473041 original size:24 final size:24
Alignment explanation
Indices: 82472994--82473065 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 24
82472984 GCTTTATCAT
** *
82472994 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCCTTTTTTA
*
82473019 ATAACTGGGGCAAAGCCTTTTTTG
1 ATAACTGGGGCAAAGCCTTTTTTA
*
82473043 ATAAACTGGGGCAAAGCCCTTTT
1 AT-AACTGGGGCAAAGCCTTTTT
82473066 CGGTAAACAG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
24 14 0.34
25 27 0.66
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCAAAGCCTTTTTTA
Found at i:82473049 original size:25 final size:25
Alignment explanation
Indices: 82473021--82473090 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
82473011 CTCTTTTAAT
*
82473021 AACTGGGGCAAAGCCTTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
* *
82473046 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
82473071 AACAGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
82473091 AGCACTACCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:82473326 original size:27 final size:27
Alignment explanation
Indices: 82473296--82473540 Score: 346
Period size: 27 Copynumber: 9.1 Consensus size: 27
82473286 GGGAACATGA
* * * *
82473296 TAATTTTACCCCACATGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
82473323 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * *
82473350 TATTTCTACCCTATAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
82473377 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
82473404 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
82473431 TAATTCTACCTTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
82473458 TAATTCTACCCTACAGAGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * * **
82473485 TATTTCTGCCCTACAAGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGG
82473512 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
82473539 TA
1 TA
82473541 TTTTACAAAT
Statistics
Matches: 190, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 190 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGG
Found at i:82473556 original size:27 final size:26
Alignment explanation
Indices: 82473528--82473678 Score: 153
Period size: 27 Copynumber: 5.7 Consensus size: 26
82473518 TACCCTACAG
*
82473528 GGGTATTTCGGT-ATTTTACAAATCAA
1 GGGTATTTTGGTAATTTTACAAA-CAA
*
82473554 GGGTATTTTGGTAATTTTACAAACCA
1 GGGTATTTTGGTAATTTTACAAACAA
*
82473580 GAGGTATTTTAGTAATTTTACAAACCAA
1 G-GGTATTTTGGTAATTTTACAAA-CAA
* * *
82473608 GGGTATTTTGGTAATTTTACTGATCGA
1 GGGTATTTTGGTAATTTTAC-AAACAA
**
82473635 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-CAA
* *
82473662 TGGTA-TTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
82473679 GTAAATCGAG
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
26 26 0.25
27 75 0.71
28 4 0.04
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.42
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACAA
Found at i:82473614 original size:54 final size:54
Alignment explanation
Indices: 82473540--82473692 Score: 175
Period size: 54 Copynumber: 2.9 Consensus size: 54
82473530 GTATTTCGGT
*
82473540 ATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACC-AGAGGTATTTTAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCGAG-GGTATTTTAGTA
** * *
82473594 ATTTTACAAACCAAGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTAGTA
** * * ** *
82473648 ATTTTGTAAACCAATGGTA-TTTAGTAATTTTGTAAATCGAGGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCGAGGGTA
82473693 AAACGGTAAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
53 21 0.25
54 62 0.73
55 2 0.02
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
ATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTAGTA
Found at i:82473646 original size:81 final size:79
Alignment explanation
Indices: 82473528--82473678 Score: 214
Period size: 81 Copynumber: 1.9 Consensus size: 79
82473518 TACCCTACAG
82473528 GGGTATTTCGGTATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACCAGA-GGTATTTTAG
1 GGGTATTTCGGTATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACCA-ATGGTA-TTTAG
82473592 TAATTTTACAAACCAA
64 TAATTTTACAAACCAA
* ** * **
82473608 GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTAGT
1 GGGTATTTCGGT-ATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACCAATGGTATTTAGT
82473673 AATTTT
65 AATTTT
82473679 GTAAATCGAG
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 24 0.38
81 39 0.62
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.42
Consensus pattern (79 bp):
GGGTATTTCGGTATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACCAATGGTATTTAGTA
ATTTTACAAACCAA
Found at i:82473710 original size:27 final size:27
Alignment explanation
Indices: 82473680--82473824 Score: 227
Period size: 27 Copynumber: 5.4 Consensus size: 27
82473670 AGTAATTTTG
*
82473680 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGATAATTCTA
82473707 TAAATCGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGATAATTCTA
* * *
82473734 TAAATCGAGGGTAAAATGGTAATTTTA
1 TAAATCGAGGGTAAAACGATAATTCTA
* *
82473761 TAAATCGAGGGTAAAATGATAATTCTG
1 TAAATCGAGGGTAAAACGATAATTCTA
82473788 TAAATCGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGATAATTCTA
*
82473815 TAAATTGAGG
1 TAAATCGAGG
82473825 ATATTTGGGT
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 108 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.28
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGATAATTCTA
Found at i:82473774 original size:81 final size:81
Alignment explanation
Indices: 82473671--82473824 Score: 263
Period size: 81 Copynumber: 1.9 Consensus size: 81
82473661 ATGGTATTTA
* *
82473671 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATA
1 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTATA
82473736 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* *
82473752 GTAATTTTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAACGATAATTCTATA
1 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTATA
*
82473817 AATTGAGG
66 AATCGAGG
82473825 ATATTTGGGT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (81 bp):
GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTATA
AATCGAGGGTAAAATG
Found at i:82473865 original size:81 final size:81
Alignment explanation
Indices: 82473671--82473854 Score: 228
Period size: 81 Copynumber: 2.3 Consensus size: 81
82473661 ATGGTATTTA
* *
82473671 GTAATTTT-GTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTAT
1 GTAATTTTAG-AAACCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTAT
*
82473735 AAATCGAGGGTAAAATG
65 AAATCGAGGATAAAATG
* * * *
82473752 GTAATTTTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAACGATAATTCTATA
1 GTAATTTTAGAAACCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATA
* **
82473817 AATTGAGGAT-ATTTGG
66 AATCGAGGATAAAAT-G
* *
82473833 GTAGTTTTAGAAACCGTGGGTA
1 GTAATTTTAGAAACCGAGGGTA
82473855 CTTTGGTAAT
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 2 0.02
81 87 0.98
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.31
Consensus pattern (81 bp):
GTAATTTTAGAAACCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATA
AATCGAGGATAAAATG
Found at i:82476299 original size:25 final size:25
Alignment explanation
Indices: 82476265--82476334 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
82476255 CTCTTTTAAT
* *
82476265 AACTCGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
82476290 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
82476315 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
82476335 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:82476613 original size:26 final size:27
Alignment explanation
Indices: 82476541--82476752 Score: 275
Period size: 27 Copynumber: 7.9 Consensus size: 27
82476531 GGAAAATTGA
* * * *
82476541 TAATTTTACCCCACATGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
82476568 TAATTCTATCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * *
82476595 TATTTCTA-CCTACAAGGGTATTTCGT
1 TAATTCTACCCTACAGGGGTATTTCGG
* **
82476621 TAATT-TACTCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGG
*
82476647 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
82476674 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * *
82476701 TATTTCTACCCTACAAGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
82476728 TAATTCTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACAGGGGTATTTC
82476753 AGTATTTTAC
Statistics
Matches: 162, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
25 2 0.01
26 39 0.24
27 121 0.75
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGG
Found at i:82476687 original size:106 final size:108
Alignment explanation
Indices: 82476540--82476753 Score: 335
Period size: 106 Copynumber: 2.0 Consensus size: 108
82476530 GGGAAAATTG
* * * *
82476540 ATAATTTTACCCCACATGGGTATCTCGGTAATTCTATCCTACAGGGGTATTTCGGTATTTCTA-C
1 ATAATTCTACCCCACAGGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
*
82476604 CTACAAGGGTATTTC-GTTAATT-TACTCTACAGGGGTATTTCA
66 CTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCA
* *
82476646 ATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
1 ATAATTCTACCCCACAGGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
82476711 CTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
66 CTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
82476754 GTATTTTACA
Statistics
Matches: 98, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
106 57 0.58
107 21 0.21
108 20 0.20
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (108 bp):
ATAATTCTACCCCACAGGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
CTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
Found at i:82476772 original size:27 final size:26
Alignment explanation
Indices: 82476742--82476843 Score: 109
Period size: 27 Copynumber: 3.8 Consensus size: 26
82476732 TCTACCCTAC
82476742 AGGGGTATTTCAGT-ATTTTACAAATCA
1 AGGGGTATTT-AGTAATTTTACAAA-CA
* *
82476769 A-GGGTATTTTGGTAATTTTACAAACT
1 AGGGGTA-TTTAGTAATTTTACAAACA
*
82476795 AGGGGTATATTAGTAATTTTACAAACC
1 AGGGGTAT-TTAGTAATTTTACAAACA
*
82476822 AGGGGTATTTTGGTAATTTTAC
1 AGGGGTA-TTTAGTAATTTTAC
82476844 TGATCGAGGA
Statistics
Matches: 65, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
26 10 0.15
27 54 0.83
28 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (26 bp):
AGGGGTATTTAGTAATTTTACAAACA
Found at i:82476830 original size:54 final size:53
Alignment explanation
Indices: 82476742--82476843 Score: 161
Period size: 54 Copynumber: 1.9 Consensus size: 53
82476732 TCTACCCTAC
*
82476742 AGGGGTATTTCAGTATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTCAGTATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACT
*
82476795 AGGGGTATATT-AGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC
1 AGGGGTAT-TTCAGT-ATTTTACAAACCAAGGGTATTTTGGTAATTTTAC
82476844 TGATCGAGGA
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
53 11 0.24
54 34 0.76
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (53 bp):
AGGGGTATTTCAGTATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACT
Found at i:82476866 original size:54 final size:54
Alignment explanation
Indices: 82476756--82476895 Score: 140
Period size: 54 Copynumber: 2.6 Consensus size: 54
82476746 GTATTTCAGT
* * *
82476756 ATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATATTAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACGAGGGATATATTAGTA
* * * *
82476810 ATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGATCGA-GGATAT-TTTGATA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTTAC-AAACGAGGGATATATTAG-TA
** ** *
82476864 ATTTTGTAAACCACTGGTATTTTAGTAATTTT
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTT
82476896 GTAAATCGAG
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
53 3 0.04
54 66 0.92
55 3 0.04
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (54 bp):
ATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACGAGGGATATATTAGTA
Found at i:82476909 original size:27 final size:27
Alignment explanation
Indices: 82476744--82476936 Score: 101
Period size: 27 Copynumber: 7.2 Consensus size: 27
82476734 TACCCTACAG
* * *
82476744 GGGTATTTCAGT-ATTTTACAAATCAA
1 GGGTATTTTAGTAATTTTATAAATCGA
* * *
82476770 GGGTATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTTAGTAATTTTATAAATCGA
* * *
82476796 GGGGTATATTAGTAATTTTACAAA-CCA
1 -GGGTATTTTAGTAATTTTATAAATCGA
* *
82476823 GGGGTATTTTGGTAATTTTACT-GATCGA
1 -GGGTATTTTAGTAATTTTA-TAAATCGA
* * *
82476851 GGATATTTT-GATAATTTTGTAAA-CCA
1 GGGTATTTTAG-TAATTTTATAAATCGA
* *
82476877 CTGGTATTTTAGTAATTTTGTAAATCGA
1 -GGGTATTTTAGTAATTTTATAAATCGA
*** * * *
82476905 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTATTTTAGTAATTTTATAAATCGA
82476932 GGGTA
1 GGGTA
82476937 AAATGGTAAT
Statistics
Matches: 134, Mismatches: 24, Indels: 17
0.77 0.14 0.10
Matches are distributed among these distances:
26 16 0.12
27 113 0.84
28 5 0.04
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTATAAATCGA
Found at i:82476937 original size:27 final size:27
Alignment explanation
Indices: 82476888--82477068 Score: 227
Period size: 27 Copynumber: 6.7 Consensus size: 27
82476878 TGGTATTTTA
* * *
82476888 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
82476915 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
82476942 GTAATTCTATAAATCAATGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
82476969 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
82476996 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
82477023 GTAATCCTGTAAATCGAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
82477050 ATAATTCTATAAATTGAGG
1 GTAATTCTATAAATCGAGG
82477069 ATATTTGGGT
Statistics
Matches: 134, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:82477089 original size:81 final size:81
Alignment explanation
Indices: 82476897--82477071 Score: 251
Period size: 81 Copynumber: 2.2 Consensus size: 81
82476887 AGTAATTTTG
* * ** * *
82476897 TAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAATGG
1 TAAATCGAGGATAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATCCTATAAATCAAGGG
82476962 TAAAACGATAATTCTA
66 TAAAACGATAATTCTA
* * *
82476978 TAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATCCTGTAAATCGAGGG
1 TAAATCGAGGATAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATCCTATAAATCAAGGG
*
82477043 TGAAACGATAATTCTA
66 TAAAACGATAATTCTA
*
82477059 TAAATTGAGGATA
1 TAAATCGAGGATA
82477072 TTTGGGTAGT
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 84 1.00
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (81 bp):
TAAATCGAGGATAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATCCTATAAATCAAGGG
TAAAACGATAATTCTA
Found at i:82479009 original size:14 final size:15
Alignment explanation
Indices: 82478979--82479012 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
82478969 GTTGTATTAG
82478979 TAAAATAAATAATAA
1 TAAAATAAATAATAA
*
82478994 TAAAATAAGT-ATAA
1 TAAAATAAATAATAA
82479008 TAAAA
1 TAAAA
82479013 CATATATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (15 bp):
TAAAATAAATAATAA
Found at i:82481719 original size:19 final size:20
Alignment explanation
Indices: 82481695--82481733 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
82481685 GGGTGAGAAG
*
82481695 TAAAAA-TTTAGGGGGAAAA
1 TAAAAAGTTTAGGGAGAAAA
*
82481714 TAAAAAGTTTTGGGAGAAAA
1 TAAAAAGTTTAGGGAGAAAA
82481734 AAGTTTTGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.51, C:0.00, G:0.26, T:0.23
Consensus pattern (20 bp):
TAAAAAGTTTAGGGAGAAAA
Found at i:82482116 original size:9 final size:9
Alignment explanation
Indices: 82482102--82482138 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
82482092 TATAGTTTGA
82482102 TATTCGAAT
1 TATTCGAAT
82482111 TATTCGAAT
1 TATTCGAAT
*
82482120 TATTCGAGT
1 TATTCGAAT
82482129 TATTCGAAT
1 TATTCGAAT
82482138 T
1 T
82482139 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:82482157 original size:24 final size:24
Alignment explanation
Indices: 82482130--82482215 Score: 172
Period size: 24 Copynumber: 3.6 Consensus size: 24
82482120 TATTCGAGTT
82482130 ATTCGAATTCGAAAACTCAACTCG
1 ATTCGAATTCGAAAACTCAACTCG
82482154 ATTCGAATTCGAAAACTCAACTCG
1 ATTCGAATTCGAAAACTCAACTCG
82482178 ATTCGAATTCGAAAACTCAACTCG
1 ATTCGAATTCGAAAACTCAACTCG
82482202 ATTCGAATTCGAAA
1 ATTCGAATTCGAAA
82482216 TTCGAAAAAA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (24 bp):
ATTCGAATTCGAAAACTCAACTCG
Found at i:82484730 original size:30 final size:30
Alignment explanation
Indices: 82484696--82484753 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
82484686 TTTTCGGGCA
* *
82484696 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
82484726 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
82484754 ATGTAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:82485164 original size:47 final size:46
Alignment explanation
Indices: 82485096--82485452 Score: 212
Period size: 47 Copynumber: 7.6 Consensus size: 46
82485086 TTTGTGCGCT
* * * *
82485096 AGTGTAAGACATGTCTAGGACATGCTTCGGCCACTTTTTGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCACTATATGAGAGCC
* * * * *
82485142 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CATCCAGATGAGGGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCA-CTATATGAGAGCC
* *
82485190 AGTGTAAGACATGTTTAGGACATGCATCAGCCA-TACTATGATAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCACTA-TATGAGAGCC
* * * * * *
82485236 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCACAGAGATGAGTGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCAC-TATATGAGAGCC
* * * * *
82485284 AGTGTAAGACATGTTTGGGACATGCATCGGCCTTGAC-AGA-GATAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCAGCC---ACTATATGAGAGCC
* * * * * * * *
82485331 AGTGTAAGACGTGTCT-GAGACACGCATCGGCTA--AGA-GTTGTGCT
1 AGTGTAAGACATGTCTAG-GACATGCATCAGCCACTATATG-AGAGCC
82485375 AGTGTAAGACATGTCTAGGACATGCATCAG-CATGCGTATATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCA--C-TATATGAGAGCC
*
82485423 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATC
82485453 GACAATATAT
Statistics
Matches: 241, Mismatches: 46, Indels: 44
0.73 0.14 0.13
Matches are distributed among these distances:
43 5 0.02
44 28 0.12
45 2 0.01
46 37 0.15
47 89 0.37
48 58 0.24
49 15 0.06
50 7 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCAGCCACTATATGAGAGCC
Found at i:82485254 original size:94 final size:94
Alignment explanation
Indices: 82485093--82485453 Score: 409
Period size: 94 Copynumber: 3.9 Consensus size: 94
82485083 TGATTTGTGC
* * * *
82485093 GCTAGTGTAAGACATGTCTAGGACATGCTTCGGCCACT-TTTTGAGAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCA-TACTATGAGAGCCAGTGTAAGACCATGT
* * *
82485157 CTGGGACATGGCATCAGCATCCAGATGAGG
65 CTGGGACATGGCATCGGCATCAAGATGAGT
* *
82485187 GCTAGTGTAAGACATGTTTAGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTC
82485252 TGGGACATGGCATCGGCA-CAGAGATGAGT
66 TGGGACATGGCATCGGCATCA-AGATGAGT
* * * * *
82485281 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTTGAC-A-GAGATAGCCAGTGTAAGA-CGT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCAT-ACTATGAG--AGCCAGTGTAAGACCAT
* * *
82485343 GTCTGAGACA-CGCATCGGC-T-AAGA-GTTGT
63 GTCTGGGACATGGCATCGGCATCAAGATG-AGT
*
82485372 GCTAGTGTAAGACATGTCTAGGACATGCATCAG-CATGCGTATATGAGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCATAC---TATGAGAGCCAGTGTAAGACCAT
82485436 GTCTGGGACATGGCATCG
63 GTCTGGGACATGGCATCG
82485454 ACAATATATC
Statistics
Matches: 228, Mismatches: 25, Indels: 28
0.81 0.09 0.10
Matches are distributed among these distances:
89 1 0.00
90 3 0.01
91 35 0.15
92 14 0.06
93 24 0.11
94 136 0.60
95 15 0.07
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCATCAAGATGAGT
Found at i:82489495 original size:16 final size:15
Alignment explanation
Indices: 82489465--82489507 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
82489455 ATCGAGTTGG
*
82489465 GAAAATTATTTAATT
1 GAAAATTAATTAATT
82489480 GAAAAGTTAATTAATT
1 GAAAA-TTAATTAATT
82489496 -AAAATTAATTAA
1 GAAAATTAATTAA
82489508 ATAAATAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 8 0.31
15 9 0.35
16 9 0.35
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (15 bp):
GAAAATTAATTAATT
Found at i:82489505 original size:14 final size:14
Alignment explanation
Indices: 82489466--82489512 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
82489456 TCGAGTTGGG
*
82489466 AAAATTATTTAATT
1 AAAATTAATTAATT
82489480 GAAAAGTTAATTAATT
1 -AAAA-TTAATTAATT
*
82489496 AAAATTAATTAAAT
1 AAAATTAATTAATT
82489510 AAA
1 AAA
82489513 TAATGTCTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 12 0.41
15 8 0.28
16 9 0.31
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (14 bp):
AAAATTAATTAATT
Found at i:82494732 original size:22 final size:22
Alignment explanation
Indices: 82494704--82494745 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
82494694 ATCAACTAAT
82494704 CCGATACTTTTTCCTTTCCCTG
1 CCGATACTTTTTCCTTTCCCTG
82494726 CCGATACTTTTTCCTTTCCC
1 CCGATACTTTTTCCTTTCCC
82494746 CGATCTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.10, C:0.38, G:0.07, T:0.45
Consensus pattern (22 bp):
CCGATACTTTTTCCTTTCCCTG
Found at i:82495373 original size:13 final size:14
Alignment explanation
Indices: 82495349--82495377 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
82495339 GTAATGTGAT
82495349 TTTTGTTTTATTTA
1 TTTTGTTTTATTTA
82495363 TTTTG-TTTATTTA
1 TTTTGTTTTATTTA
82495376 TT
1 TT
82495378 ATTAAATTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (14 bp):
TTTTGTTTTATTTA
Found at i:82501786 original size:15 final size:15
Alignment explanation
Indices: 82501766--82501800 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
82501756 CACTGGTTAT
82501766 GACCTAGTATTACTC
1 GACCTAGTATTACTC
82501781 GACCTAGTATTACTC
1 GACCTAGTATTACTC
82501796 GACCT
1 GACCT
82501801 GTTACTGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (15 bp):
GACCTAGTATTACTC
Found at i:82509822 original size:83 final size:83
Alignment explanation
Indices: 82509683--82509864 Score: 355
Period size: 83 Copynumber: 2.2 Consensus size: 83
82509673 TAAGAAGGAT
82509683 ACCCAGCATTGTTTCTTCCTTTCTCTGTAAAAAGCCCAGGGTTGAATGCTTCTCATTCTTCTTTG
1 ACCCAGCATTGTTTCTTCCTTTCTCTGTAAAAAGCCCAGGGTTGAATGCTTCTCATTCTTCTTTG
82509748 TGTTGCTTCTCTGTACAA
66 TGTTGCTTCTCTGTACAA
*
82509766 ACCCAGCATTGTTTCTTCCTTTCTCTGTACAAAGCCCAGGGTTGAATGCTTCTCATTCTTCTTTG
1 ACCCAGCATTGTTTCTTCCTTTCTCTGTAAAAAGCCCAGGGTTGAATGCTTCTCATTCTTCTTTG
82509831 TGTTGCTTCTCTGTACAA
66 TGTTGCTTCTCTGTACAA
82509849 ACCCAGCATTGTTTCT
1 ACCCAGCATTGTTTCT
82509865 CCCTCTTTCC
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 98 1.00
ACGTcount: A:0.18, C:0.26, G:0.15, T:0.41
Consensus pattern (83 bp):
ACCCAGCATTGTTTCTTCCTTTCTCTGTAAAAAGCCCAGGGTTGAATGCTTCTCATTCTTCTTTG
TGTTGCTTCTCTGTACAA
Found at i:82516841 original size:118 final size:120
Alignment explanation
Indices: 82516660--82516881 Score: 292
Period size: 118 Copynumber: 1.9 Consensus size: 120
82516650 TCCTCGTTCA
*
82516660 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
82516725 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
82516780 AATGCCTTC-GG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
82516841 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
82516882 CATCATTCAA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 66 0.74
119 10 0.11
120 9 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:82516881 original size:40 final size:40
Alignment explanation
Indices: 82516658--82516881 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
82516648 GCTCCTCGTT
* *
82516658 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
82516698 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
82516738 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
82516778 CCAATGCCTTC-GG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
82516816 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
82516857 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82516882 CATCATTCAA
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 33 0.20
39 2 0.01
40 116 0.71
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:82522262 original size:19 final size:20
Alignment explanation
Indices: 82522238--82522279 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
82522228 CATAAATTTA
82522238 TTTTTCAGGT-CATTTTCAT
1 TTTTTCAGGTCCATTTTCAT
**
82522257 TTTTTCATTTCCATTTTCAT
1 TTTTTCAGGTCCATTTTCAT
82522277 TTT
1 TTT
82522280 GGAGAAAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.14, C:0.17, G:0.05, T:0.64
Consensus pattern (20 bp):
TTTTTCAGGTCCATTTTCAT
Found at i:82522312 original size:57 final size:56
Alignment explanation
Indices: 82522251--82522381 Score: 163
Period size: 57 Copynumber: 2.3 Consensus size: 56
82522241 TTCAGGTCAT
* * * * *
82522251 TTTCATTTTTTCATTTCCATTTTCATTTTGGAGAAAACCACATTCATTTCCAAATG
1 TTTCATTTCTCCATTTCCAATTCCATTTTGGAGAAAACCACAATCATTTCCAAATG
* **
82522307 ATTTCATTTCTCCATTTTCAATTCCATTTTGGAGAAAACCTTAATCATTTCCAAATG
1 -TTTCATTTCTCCATTTCCAATTCCATTTTGGAGAAAACCACAATCATTTCCAAATG
82522364 TTTCCTATTTCTCCATTT
1 TTT-C-ATTTCTCCATTT
82522382 AACCATTTCT
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
56 3 0.05
57 49 0.77
58 12 0.19
ACGTcount: A:0.26, C:0.21, G:0.06, T:0.47
Consensus pattern (56 bp):
TTTCATTTCTCCATTTCCAATTCCATTTTGGAGAAAACCACAATCATTTCCAAATG
Found at i:82524860 original size:16 final size:16
Alignment explanation
Indices: 82524815--82524861 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
82524805 ATCGGCAAAA
* *
82524815 GCCGAAATGCCAAAAT
1 GCCGAAAAGCCGAAAT
**
82524831 GCCGAAAAATCGAAAT
1 GCCGAAAAGCCGAAAT
82524847 GCCGAAAAGCCGAAA
1 GCCGAAAAGCCGAAA
82524862 GTTTGGCTAC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.47, C:0.23, G:0.21, T:0.09
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Found at i:82525127 original size:29 final size:29
Alignment explanation
Indices: 82525085--82525156 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 29
82525075 TGAATATGAC
* * *
82525085 TGGGCTTAACGGGCCATACAAATGTGATT
1 TGGGCCTAATGGGCCATACAAAGGTGATT
* *
82525114 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATACAAAGGTGATT
82525143 TGGGCCTAATGGGC
1 TGGGCCTAATGGGC
82525157 TTGGGCTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATACAAAGGTGATT
Found at i:82525162 original size:15 final size:15
Alignment explanation
Indices: 82525142--82525171 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82525132 TACAGGTGAT
82525142 TTGGGCCTAATGGGC
1 TTGGGCCTAATGGGC
*
82525157 TTGGGCTTAATGGGC
1 TTGGGCCTAATGGGC
82525172 CAGATACAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.17, G:0.40, T:0.30
Consensus pattern (15 bp):
TTGGGCCTAATGGGC
Found at i:82526273 original size:17 final size:18
Alignment explanation
Indices: 82526240--82526273 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82526230 TTTTAAGAAG
*
82526240 GGTTTTCAATGAAAACAA
1 GGTTTTAAATGAAAACAA
82526258 GGTTTTAAAT-AAAACA
1 GGTTTTAAATGAAAACA
82526274 CTTCAATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.29
Consensus pattern (18 bp):
GGTTTTAAATGAAAACAA
Found at i:82533693 original size:41 final size:42
Alignment explanation
Indices: 82533648--82533728 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 42
82533638 CCGGCACGAA
* *
82533648 ACCTGCTAGACTTTAAGTCT-AAACTCA-TTCACCGGCATTTC
1 ACCTGCTAGACTTGAAGCCTGAAA-TCATTTCACCGGCATTTC
* *
82533689 ACCTGCTAGGCTTGAAGCCTGATATCATTTCACCGGCATT
1 ACCTGCTAGACTTGAAGCCTGAAATCATTTCACCGGCATT
82533729 ATAGCCTGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 20 0.59
42 14 0.41
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (42 bp):
ACCTGCTAGACTTGAAGCCTGAAATCATTTCACCGGCATTTC
Found at i:82533749 original size:43 final size:43
Alignment explanation
Indices: 82533675--82533798 Score: 180
Period size: 43 Copynumber: 2.9 Consensus size: 43
82533665 TCTAAACTCA
** *
82533675 TTCACCGGCATT-TCA-CCTGCTAGGCTTGAAGCCTGATATCAT
1 TTCACCGGCATTAT-AGCCTGCTAGGCCCGAAGCCCGATATCAT
*
82533717 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
*
82533760 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
82533799 ATATTATTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
42 13 0.17
43 62 0.83
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:82533838 original size:43 final size:46
Alignment explanation
Indices: 82533718--82533839 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 46
82533708 TGATATCATT
* * *
82533718 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCG---ATATTATC
1 TCACCAGCATTAAAGCCTACTAGGCCCGAAGCCCGATAATATTATC
* * *
82533761 TCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATAATATTAT-
1 TCACCAGCATTAAAGCCTACTAGGCCCGAAGCCCGATAATATTATC
* *
82533806 TCACCAGC-TTAAAGCTTACTAGG-CCGAGGCCCGA
1 TCACCAGCATTAAAGCCTACTAGGCCCGAAGCCCGA
82533840 ATATCACATT
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
43 45 0.63
44 12 0.17
45 7 0.10
46 7 0.10
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.22
Consensus pattern (46 bp):
TCACCAGCATTAAAGCCTACTAGGCCCGAAGCCCGATAATATTATC
Found at i:82548165 original size:40 final size:40
Alignment explanation
Indices: 82548116--82548202 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 40
82548106 GTGTTGTACA
* * *
82548116 TAGCTGAAGCTAT-CTCAAATCGCACACTAAGTGCCAAATT
1 TAGCCGAAGCTATAC-CAAACCGCACACTAAGTACCAAATT
* * *
82548156 TAGCCGAAGCTATACCGAACCGCACACTCAGTACCATATT
1 TAGCCGAAGCTATACCAAACCGCACACTAAGTACCAAATT
82548196 TAGCCGA
1 TAGCCGA
82548203 TATGTCATCA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
40 39 0.98
41 1 0.03
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (40 bp):
TAGCCGAAGCTATACCAAACCGCACACTAAGTACCAAATT
Found at i:82568055 original size:10 final size:10
Alignment explanation
Indices: 82568037--82568071 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
82568027 AATTTCAACT
*
82568037 TTTAACTTTA
1 TTTATCTTTA
82568047 TTTATCTTTA
1 TTTATCTTTA
82568057 TTTATCTTTA
1 TTTATCTTTA
82568067 TTTAT
1 TTTAT
82568072 TTATCTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:82568070 original size:14 final size:14
Alignment explanation
Indices: 82568053--82568079 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
82568043 TTTATTTATC
82568053 TTTATTTATCTTTA
1 TTTATTTATCTTTA
82568067 TTTATTTATCTTT
1 TTTATTTATCTTT
82568080 TAGATTTGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTATTTATCTTTA
Found at i:82575617 original size:23 final size:25
Alignment explanation
Indices: 82575587--82575632 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
82575577 TCTTTTTTTC
*
82575587 TCCTTTTTC-GTTTT-TTTCTTTGT
1 TCCTTTTTCTATTTTGTTTCTTTGT
82575610 TCCTTTTTCTATTTTGTTTCTTT
1 TCCTTTTTCTATTTTGTTTCTTT
82575633 ATTTTCTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 4 0.20
25 7 0.35
ACGTcount: A:0.02, C:0.17, G:0.07, T:0.74
Consensus pattern (25 bp):
TCCTTTTTCTATTTTGTTTCTTTGT
Found at i:82575674 original size:8 final size:8
Alignment explanation
Indices: 82575663--82575713 Score: 75
Period size: 8 Copynumber: 6.4 Consensus size: 8
82575653 AGTTTTATTA
82575663 TATTATAT
1 TATTATAT
82575671 TATTATAT
1 TATTATAT
*
82575679 TAATATAT
1 TATTATAT
82575687 TATTATAT
1 TATTATAT
*
82575695 TAATATAT
1 TATTATAT
*
82575703 TATTACAT
1 TATTATAT
82575711 TAT
1 TAT
82575714 ACACTTAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (8 bp):
TATTATAT
Found at i:82575675 original size:13 final size:13
Alignment explanation
Indices: 82575657--82575705 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
82575647 ATTTTAAGTT
82575657 TTATTATATTATA
1 TTATTATATTATA
82575670 TTATTATATTA-A
1 TTATTATATTATA
82575682 -TA-TATTATTATA
1 TTATTA-TATTATA
*
82575694 TTAATATATTAT
1 TTATTATATTAT
82575706 TACATTATAC
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
10 2 0.06
11 7 0.22
12 2 0.06
13 19 0.59
14 2 0.06
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TTATTATATTATA
Found at i:82575685 original size:16 final size:16
Alignment explanation
Indices: 82575666--82575712 Score: 85
Period size: 16 Copynumber: 2.9 Consensus size: 16
82575656 TTTATTATAT
82575666 TATATTATTATATTAA
1 TATATTATTATATTAA
82575682 TATATTATTATATTAA
1 TATATTATTATATTAA
*
82575698 TATATTATTACATTA
1 TATATTATTATATTA
82575713 TACACTTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (16 bp):
TATATTATTATATTAA
Found at i:82583134 original size:18 final size:17
Alignment explanation
Indices: 82583111--82583157 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
82583101 AATTTTTCCT
82583111 TTTCTTTTTCTATTCTTC-
1 TTTCTTTTTCT-TT-TTCA
*
82583129 TTTCTTTATCCTTTTTCA
1 TTTCTTT-TTCTTTTTCA
82583147 TTTCTTTTTCT
1 TTTCTTTTTCT
82583158 GCTCCTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 6 0.24
18 16 0.64
19 3 0.12
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTCTTTTTCTTTTTCA
Found at i:82583142 original size:25 final size:24
Alignment explanation
Indices: 82583114--82583185 Score: 69
Period size: 24 Copynumber: 3.0 Consensus size: 24
82583104 TTTTCCTTTT
82583114 CTTTTTCTATTCTTCTTTCTTTATC
1 CTTTTTCTATTCTT-TTTCTTTATC
**
82583139 CTTTTTC-ATTTCTTTTTC-TGCTC
1 CTTTTTCTA-TTCTTTTTCTTTATC
82583162 CTTTTTTCTATT-TTGTTTCTTTAT
1 C-TTTTTCTATTCTT-TTTCTTTAT
82583186 TTTCTTTCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
23 6 0.16
24 17 0.45
25 15 0.39
ACGTcount: A:0.07, C:0.21, G:0.03, T:0.69
Consensus pattern (24 bp):
CTTTTTCTATTCTTTTTCTTTATC
Found at i:82583186 original size:13 final size:14
Alignment explanation
Indices: 82583170--82583202 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
82583160 TCCTTTTTTC
*
82583170 TATTTTGTTTC-TT
1 TATTTTCTTTCATT
82583183 TATTTTCTTTCATT
1 TATTTTCTTTCATT
82583197 TATTTT
1 TATTTT
82583203 ATGTTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.12, C:0.09, G:0.03, T:0.76
Consensus pattern (14 bp):
TATTTTCTTTCATT
Found at i:82583225 original size:8 final size:8
Alignment explanation
Indices: 82583214--82583245 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
82583204 TGTTTTATTA
82583214 TATTATAT
1 TATTATAT
82583222 TATTATAT
1 TATTATAT
82583230 TATTATAT
1 TATTATAT
82583238 TA-TATAT
1 TATTATAT
82583245 T
1 T
82583246 TAAATACTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 6 0.25
8 18 0.75
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATTATAT
Found at i:82583226 original size:13 final size:12
Alignment explanation
Indices: 82583194--82583247 Score: 58
Period size: 13 Copynumber: 4.4 Consensus size: 12
82583184 ATTTTCTTTC
*
82583194 ATTTATTTTATGT
1 ATTTATTATAT-T
82583207 -TTTATTATATT
1 ATTTATTATATT
82583218 ATATTATTATATT
1 AT-TTATTATATT
82583231 ATTATATTATA-T
1 ATT-TATTATATT
82583243 ATTTA
1 ATTTA
82583248 AATACTAAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
11 3 0.08
12 15 0.41
13 19 0.51
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (12 bp):
ATTTATTATATT
Found at i:82584829 original size:7 final size:7
Alignment explanation
Indices: 82584790--82584860 Score: 78
Period size: 7 Copynumber: 10.3 Consensus size: 7
82584780 GGCAACCCAA
82584790 TTTTA-T
1 TTTTATT
82584796 TTTTAGTT
1 TTTTA-TT
82584804 TTTT-TAT
1 TTTTAT-T
*
82584811 TTATATTT
1 TTTTA-TT
82584819 TTTTATT
1 TTTTATT
82584826 TTTTATT
1 TTTTATT
82584833 TTTTATT
1 TTTTATT
82584840 TTTTA--
1 TTTTATT
82584845 TTTTATT
1 TTTTATT
82584852 TTTTATT
1 TTTTATT
82584859 TT
1 TT
82584861 CTTGCATGTT
Statistics
Matches: 56, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
5 5 0.09
6 6 0.11
7 34 0.61
8 10 0.18
9 1 0.02
ACGTcount: A:0.15, C:0.00, G:0.01, T:0.83
Consensus pattern (7 bp):
TTTTATT
Found at i:82584843 original size:21 final size:21
Alignment explanation
Indices: 82584790--82584860 Score: 78
Period size: 19 Copynumber: 3.4 Consensus size: 21
82584780 GGCAACCCAA
82584790 TTTTA-TTTTTAGTTTTTT-TAT
1 TTTTATTTTTTA-TTTTTTAT-T
*
82584811 TTATATTTTTTTATTTTTTATT
1 TTTTA-TTTTTTATTTTTTATT
82584833 TTTTATTTTTTA--TTTTATT
1 TTTTATTTTTTATTTTTTATT
82584852 TTTTATTTT
1 TTTTATTTT
82584861 CTTGCATGTT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
19 16 0.36
21 11 0.24
22 11 0.24
23 7 0.16
ACGTcount: A:0.15, C:0.00, G:0.01, T:0.83
Consensus pattern (21 bp):
TTTTATTTTTTATTTTTTATT
Found at i:82586098 original size:107 final size:108
Alignment explanation
Indices: 82585912--82586113 Score: 318
Period size: 107 Copynumber: 1.9 Consensus size: 108
82585902 ACAAAAAAAT
*
82585912 TTAGGAATATGTTGGGATGAGTAATCGGGATGGGGTGCTTGGCTATCATCTCTCTTCGCGTCAAA
1 TTAGGAATATGTTAGGATGAGTAATCGGGATGGGGTGCTTGGCTATCATCTCTCTTCGCGTCAAA
82585977 AGGTTCAATATATTCTTAAGAAAA-AAAAACATGTATAATAAA
66 AGGTTCAATATATTCTTAAGAAAAGAAAAACATGTATAATAAA
* * * * * *
82586019 TTAGGAGTATGTTAGGCTGAGTAA-CTGGGGTGGGGTGCTTGGTTGTCATCTCTCTTCGTGTCAA
1 TTAGGAATATGTTAGGATGAGTAATC-GGGATGGGGTGCTTGGCTATCATCTCTCTTCGCGTCAA
82586083 AAGGTTCAATATATTCTTAAGAAAAGAAAAA
65 AAGGTTCAATATATTCTTAAGAAAAGAAAAA
82586114 TGAAGTAAAA
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
106 1 0.01
107 80 0.93
108 5 0.06
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.32
Consensus pattern (108 bp):
TTAGGAATATGTTAGGATGAGTAATCGGGATGGGGTGCTTGGCTATCATCTCTCTTCGCGTCAAA
AGGTTCAATATATTCTTAAGAAAAGAAAAACATGTATAATAAA
Found at i:82588351 original size:46 final size:46
Alignment explanation
Indices: 82588300--82588394 Score: 172
Period size: 46 Copynumber: 2.1 Consensus size: 46
82588290 CCAGTCAGTC
* *
82588300 ACATCTATGCCTCTATCTTCTGGAGTCATCCGCTCTAATGCCCAAG
1 ACATCTATGCCTCTATCTTCTAGAGTCATCCGCTCCAATGCCCAAG
82588346 ACATCTATGCCTCTATCTTCTAGAGTCATCCGCTCCAATGCCCAAG
1 ACATCTATGCCTCTATCTTCTAGAGTCATCCGCTCCAATGCCCAAG
82588392 ACA
1 ACA
82588395 AAACATCTCT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.24, C:0.34, G:0.14, T:0.28
Consensus pattern (46 bp):
ACATCTATGCCTCTATCTTCTAGAGTCATCCGCTCCAATGCCCAAG
Found at i:82590156 original size:26 final size:25
Alignment explanation
Indices: 82590124--82590197 Score: 87
Period size: 25 Copynumber: 2.9 Consensus size: 25
82590114 AATTTTTAAA
82590124 TTAAAAATATAAAAAAAACTAAATT
1 TTAAAAATATAAAAAAAACTAAATT
* **
82590149 TCTAAAAATA-AAATATGACTAAATT
1 T-TAAAAATATAAAAAAAACTAAATT
*
82590174 TTAAAAATATAAAAAGAAAATAAA
1 TTAAAAATATAAAAA-AAACTAAA
82590198 AACTTCGAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
24 8 0.21
25 18 0.46
26 13 0.33
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.27
Consensus pattern (25 bp):
TTAAAAATATAAAAAAAACTAAATT
Found at i:82596814 original size:39 final size:39
Alignment explanation
Indices: 82596753--82597014 Score: 395
Period size: 39 Copynumber: 6.7 Consensus size: 39
82596743 TTCCAACACA
*
82596753 AATGTCTTCGGGACTTAGCCCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* *
82596792 AATACCTTCGGGACTTATCCCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
82596831 AATACCTTCGGGACTTAGCCCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
82596870 AATGCCTTCGGGACTTAGCCCGGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
82596909 AATGCCTTCGGGACTTAGCCCGGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
82596948 AATGCCTTCGGGACTTAGCCCGGATATAA-ATCTCA-CAC-
1 AATGCCTTCGGGACTTAGCCCGGATATAACA-C-CAGCACG
* * * *
82596986 AAGGCCTACGGGTCTTAGCCCGGTTATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
82597015 TCCTCAACTA
Statistics
Matches: 210, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
38 26 0.12
39 182 0.87
40 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.22, T:0.19
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
Found at i:82599755 original size:21 final size:21
Alignment explanation
Indices: 82599729--82599780 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
82599719 TGCAGGGCAC
* **
82599729 ACACGCTCGTGTGGTCCAAAG
1 ACACGCCCGTGTGACCCAAAG
*
82599750 ACACGCCCGTGTGACCCTAAG
1 ACACGCCCGTGTGACCCAAAG
82599771 ACACGCCCGT
1 ACACGCCCGT
82599781 ACTGCAGGCC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.23, C:0.37, G:0.25, T:0.15
Consensus pattern (21 bp):
ACACGCCCGTGTGACCCAAAG
Found at i:82604291 original size:11 final size:12
Alignment explanation
Indices: 82604275--82604303 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
82604265 TTTTGCAAAG
82604275 AAGAAAAT-GAA
1 AAGAAAATGGAA
82604286 AAGAAAATGGAA
1 AAGAAAATGGAA
82604298 AAGAAA
1 AAGAAA
82604304 CAGGGAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.07
Consensus pattern (12 bp):
AAGAAAATGGAA
Found at i:82605403 original size:19 final size:20
Alignment explanation
Indices: 82605372--82605410 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
82605362 ATAAATTTGA
*
82605372 TTATTTAAAAAATAATAATT
1 TTATTTAAAAAATAAAAATT
82605392 TTATTT-AAAAATAAAAATT
1 TTATTTAAAAAATAAAAATT
82605411 AACTTGTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTAAAAAATAAAAATT
Found at i:82607002 original size:16 final size:17
Alignment explanation
Indices: 82606981--82607020 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
82606971 AATCAAGATG
82606981 AACATAAACCATAA-TC-
1 AACATAAACCA-AATTCA
82606997 AACAT-AACCAAATTCA
1 AACATAAACCAAATTCA
82607013 AACATAAA
1 AACATAAA
82607021 AGTTAAGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.10
15 7 0.33
16 10 0.48
17 2 0.10
ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17
Consensus pattern (17 bp):
AACATAAACCAAATTCA
Found at i:82609817 original size:40 final size:41
Alignment explanation
Indices: 82609763--82609840 Score: 106
Period size: 40 Copynumber: 1.9 Consensus size: 41
82609753 TGGGATTATA
* * *
82609763 ATTATAATTATGTATTTAATTTTTAAAATAAT-ATATAATAT
1 ATTAAAATTATGTATTAAATTATTAAAA-AATAATATAATAT
82609804 ATTAAAATT-TGTATTAAATTATTAAAAAATAATATAA
1 ATTAAAATTATGTATTAAATTATTAAAAAATAATATAA
82609841 CATAATTTAC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 3 0.09
40 22 0.67
41 8 0.24
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (41 bp):
ATTAAAATTATGTATTAAATTATTAAAAAATAATATAATAT
Found at i:82611594 original size:12 final size:12
Alignment explanation
Indices: 82611577--82611601 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82611567 ACTCATATTT
82611577 TATTATTATCTA
1 TATTATTATCTA
82611589 TATTATTATCTA
1 TATTATTATCTA
82611601 T
1 T
82611602 TTTAAACTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTATTATCTA
Found at i:82617884 original size:18 final size:20
Alignment explanation
Indices: 82617841--82617884 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 20
82617831 ACACTGGTTG
82617841 TACCTAAAAGACAAAACAAA
1 TACCTAAAAGACAAAACAAA
82617861 TA-CTAAAA-ACAAGAA-AAA
1 TACCTAAAAGACAA-AACAAA
82617879 -ACCTAA
1 TACCTAA
82617885 GAACTCATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 1 0.05
18 11 0.50
19 8 0.36
20 2 0.09
ACGTcount: A:0.66, C:0.18, G:0.05, T:0.11
Consensus pattern (20 bp):
TACCTAAAAGACAAAACAAA
Found at i:82623549 original size:123 final size:123
Alignment explanation
Indices: 82623330--82623575 Score: 483
Period size: 123 Copynumber: 2.0 Consensus size: 123
82623320 ATTGTGGTGA
82623330 GGTGTTGTAAAGCAAATGCTAGAAGGATTGTAAAAAAAGTTTCTTAGAGGAATATTCAATTAGTA
1 GGTGTTGTAAAGCAAATGCTAGAAGGATTGTAAAAAAAGTTTCTTAGAGGAATATTCAATTAGTA
82623395 AGTTTAAATTTTCTGGTTTTAATTGTAATTTTTTCATTCTCTACTTTATTGGTTGTCT
66 AGTTTAAATTTTCTGGTTTTAATTGTAATTTTTTCATTCTCTACTTTATTGGTTGTCT
*
82623453 GGTGTTGTAAAGCAAATGCTAGAAGGATTGTAAAAAAAGTTTCTTAGAGGGATATTCAATTAGTA
1 GGTGTTGTAAAGCAAATGCTAGAAGGATTGTAAAAAAAGTTTCTTAGAGGAATATTCAATTAGTA
82623518 AGTTTAAATTTTCTGGTTTTAATTGTAATTTTTTCATTCTCTACTTTATTGGTTGTCT
66 AGTTTAAATTTTCTGGTTTTAATTGTAATTTTTTCATTCTCTACTTTATTGGTTGTCT
82623576 TTCTTACTAG
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 122 1.00
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (123 bp):
GGTGTTGTAAAGCAAATGCTAGAAGGATTGTAAAAAAAGTTTCTTAGAGGAATATTCAATTAGTA
AGTTTAAATTTTCTGGTTTTAATTGTAATTTTTTCATTCTCTACTTTATTGGTTGTCT
Found at i:82627943 original size:22 final size:22
Alignment explanation
Indices: 82627917--82627961 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
82627907 TTTTAATAAA
82627917 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
82627939 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
82627961 A
1 A
82627962 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:82632541 original size:22 final size:22
Alignment explanation
Indices: 82632516--82632560 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
82632506 TTTAATAAAA
82632516 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
82632538 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
82632560 A
1 A
82632561 CACTAACTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:82648476 original size:87 final size:87
Alignment explanation
Indices: 82648371--82648544 Score: 348
Period size: 87 Copynumber: 2.0 Consensus size: 87
82648361 AGTCAAGTCG
82648371 AGTCTAGTTAACGAATCCTATTATTTATACTCAATGTTGTGTTTACATGAACCGATTATTTAACT
1 AGTCTAGTTAACGAATCCTATTATTTATACTCAATGTTGTGTTTACATGAACCGATTATTTAACT
82648436 AGTAAACGAAGTATAAAATTAT
66 AGTAAACGAAGTATAAAATTAT
82648458 AGTCTAGTTAACGAATCCTATTATTTATACTCAATGTTGTGTTTACATGAACCGATTATTTAACT
1 AGTCTAGTTAACGAATCCTATTATTTATACTCAATGTTGTGTTTACATGAACCGATTATTTAACT
82648523 AGTAAACGAAGTATAAAATTAT
66 AGTAAACGAAGTATAAAATTAT
82648545 TTAACTACAT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.38
Consensus pattern (87 bp):
AGTCTAGTTAACGAATCCTATTATTTATACTCAATGTTGTGTTTACATGAACCGATTATTTAACT
AGTAAACGAAGTATAAAATTAT
Found at i:82648638 original size:21 final size:21
Alignment explanation
Indices: 82648612--82648653 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
82648602 CAAAACAACG
*
82648612 TGGTTTTGCCTTTTAACTTTA
1 TGGTTTTGACTTTTAACTTTA
82648633 TGGTTTTGACTTTTAACTTTA
1 TGGTTTTGACTTTTAACTTTA
82648654 GAAAAGGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.17, C:0.12, G:0.14, T:0.57
Consensus pattern (21 bp):
TGGTTTTGACTTTTAACTTTA
Found at i:82652340 original size:14 final size:14
Alignment explanation
Indices: 82652321--82652362 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
82652311 TGCATGATTG
82652321 TATGAAAGTTTCAT
1 TATGAAAGTTTCAT
82652335 TATGAAAGTTTCAT
1 TATGAAAGTTTCAT
*
82652349 TAAGAAA-TTTCAT
1 TATGAAAGTTTCAT
82652362 T
1 T
82652363 GATAGAGTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
13 7 0.26
14 20 0.74
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (14 bp):
TATGAAAGTTTCAT
Found at i:82656449 original size:42 final size:42
Alignment explanation
Indices: 82656404--82656556 Score: 164
Period size: 42 Copynumber: 3.6 Consensus size: 42
82656394 TGATTTTACG
* * * *
82656404 TGTAAGAGCATATCTGGGATATGGCATCGTTATGAGATTTTG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATATTA
* *
82656446 TGTAAGACCATGTCTGGGACATGGCATCGATATGAGA-ATTA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATATTA
* * * * ***
82656487 TGTAAGACCATAACTGAGCTATTGGCATCGATATGTGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATATTA
*
82656530 TGTAAGACTATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
82656557 TGGTATGTTT
Statistics
Matches: 90, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
41 18 0.20
42 54 0.60
43 18 0.20
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATATTA
Found at i:82664442 original size:46 final size:44
Alignment explanation
Indices: 82664345--82664472 Score: 152
Period size: 46 Copynumber: 2.8 Consensus size: 44
82664335 GTATATTTGT
82664345 GCCGATGCCATGTCCCAGACATATTCTTACACT-GACACATATCGTA
1 GCCGATG-CATGTCCCAGACATA-TCTTACACTAG-CACATATCGTA
*
82664391 GCCGATGCATGTCCCAGACATATCTTACACTAGCTTACATCTCGT-
1 GCCGATGCATGTCCCAGACATATCTTACACTAGC--ACATATCGTA
* * *
82664436 GACCGATGCATGTCCTAGACATGTCTTACATTAGCAC
1 G-CCGATGCATGTCCCAGACATATCTTACACTAGCAC
82664473 TCTTCTTATT
Statistics
Matches: 74, Mismatches: 4, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
44 12 0.16
45 17 0.23
46 45 0.61
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATATCTTACACTAGCACATATCGTA
Found at i:82666050 original size:35 final size:37
Alignment explanation
Indices: 82665979--82666055 Score: 113
Period size: 35 Copynumber: 2.1 Consensus size: 37
82665969 TTATTACGAA
* *
82665979 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
82666016 GTCTTA-CCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
82666051 GTCTT
1 GTCTT
82666056 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 20 0.54
36 11 0.30
37 6 0.16
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:82666252 original size:47 final size:47
Alignment explanation
Indices: 82666174--82666924 Score: 1270
Period size: 47 Copynumber: 15.7 Consensus size: 47
82666164 CCCTTCAGGA
* * ** * * *
82666174 CTTATCACATTTATACACTTTCACATCCATCATGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82666221 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82666268 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82666315 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82666362 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82666409 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82666456 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82666503 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82666552 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82666601 CTTATCACATATATACACTTTCACATTCATCACATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACA-T--T--CATCACATCGGCCATTAGGC
82666653 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82666700 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82666749 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82666796 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82666843 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
82666890 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
82666925 AGAATCCTAA
Statistics
Matches: 678, Mismatches: 16, Indels: 20
0.95 0.02 0.03
Matches are distributed among these distances:
46 1 0.00
47 485 0.72
48 1 0.00
49 144 0.21
50 1 0.00
51 1 0.00
52 45 0.07
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82666687 original size:25 final size:25
Alignment explanation
Indices: 82666604--82666687 Score: 66
Period size: 25 Copynumber: 3.3 Consensus size: 25
82666594 ATTAGGCCTT
82666604 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
* * * *
82666629 ATCACATCACAT-CGGCCATT-AGGCCTT-
1 ATCACAT-ATATAC--ACTTTCA--CATTC
82666656 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
82666681 ATCACAT
1 ATCACAT
82666688 CGGCCATTAG
Statistics
Matches: 43, Mismatches: 8, Indels: 16
0.64 0.12 0.24
Matches are distributed among these distances:
24 3 0.07
25 18 0.42
26 8 0.19
27 11 0.26
28 3 0.07
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.32
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:82670642 original size:39 final size:40
Alignment explanation
Indices: 82670492--82670917 Score: 580
Period size: 39 Copynumber: 10.8 Consensus size: 40
82670482 AGCATGATTA
* * * *
82670492 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAAT-
1 CTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAATG
** * *
82670531 CTTCTTCGAGGTTTAGCACGGATATATTACTAGCACGAATG
1 C-TCTTCGAGACTTAGCCCGGATATATCACTAGCACGAATG
*
82670572 CTCTTCG-GAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAG-ACTTAGCCCGGATATATCACTAGCACGAATG
*
82670612 CTCTTCGAGACTTAG-CCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAATG
*
82670651 CT-TTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAATG
*
82670690 CTCTTC-AGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAATG
* *
82670729 CTCCTTCGAGACTTAGCCCAGATACATCAACTAGCACGAATG
1 CT-CTTCGAGACTTAGCCCGGATATATC-ACTAGCACGAATG
* *
82670771 CTCTTCGGGACTTAGCCCGGACATATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAATG
*
82670811 CTCCTCG-GACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAATG
*
82670850 CTC-TCGGGACTTAGCCCGGATATAT-ACTAGCACGAATG
1 CTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAATG
* *
82670888 CTCCTCGGGACTTAGCCCGGATATATCACT
1 CTCTTCGAGACTTAGCCCGGATATATCACT
82670918 CTCAATTCTC
Statistics
Matches: 355, Mismatches: 20, Indels: 23
0.89 0.05 0.06
Matches are distributed among these distances:
38 31 0.09
39 163 0.46
40 104 0.29
41 42 0.12
42 15 0.04
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
CTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:82670842 original size:199 final size:197
Alignment explanation
Indices: 82670504--82670917 Score: 598
Period size: 199 Copynumber: 2.1 Consensus size: 197
82670494 CTTCGGGACC
* * * ** * * *
82670504 TAGCCCGGATATAACACCAGCACGAATCTTCTTCGAGGTTTAGCACGGATATATTACTAGCACGA
1 TAGCCCGGATATATCACTAGCACGAATCTCCTTCGAGACTTAGCACAGATACATAACTAGCACGA
* *
82670569 ATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCGGATA
66 ATGCTCTTCGGAACTTAGCCCGGACACATCACTAGCACGAATGCTCCTCGAGACTTAGCCGGATA
* *
82670634 CATCACTAGCACGAATGCTTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-AG
131 CATCACTAGCACGAATGCTCTCGAGACTTAGCCCGGATACAT-ACTAGCACGAATGCTCCTCGAG
82670698 ACT
195 ACT
* *
82670701 TAGCCCGGATACATCACTAGCACGAATGCTCCTTCGAGACTTAGCCCAGATACATCAACTAGCAC
1 TAGCCCGGATATATCACTAGCACGAAT-CTCCTTCGAGACTTAGCACAGATACAT-AACTAGCAC
* *
82670766 GAATGCTCTTCGGGACTTAGCCCGGACATATCACTAGCACGAATGCTCCTCG-GACTTAGCCCGG
64 GAATGCTCTTCGGAACTTAGCCCGGACACATCACTAGCACGAATGCTCCTCGAGACTTAG-CCGG
* * *
82670830 ATATATCACTAGCACGAATGCTCTCGGGACTTAGCCCGGATATATACTAGCACGAATGCTCCTCG
128 ATACATCACTAGCACGAATGCTCTCGAGACTTAGCCCGGATACATACTAGCACGAATGCTCCTCG
*
82670895 GGACT
193 AGACT
82670900 TAGCCCGGATATATCACT
1 TAGCCCGGATATATCACT
82670918 CTCAATTCTC
Statistics
Matches: 192, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
197 24 0.12
198 46 0.24
199 122 0.64
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (197 bp):
TAGCCCGGATATATCACTAGCACGAATCTCCTTCGAGACTTAGCACAGATACATAACTAGCACGA
ATGCTCTTCGGAACTTAGCCCGGACACATCACTAGCACGAATGCTCCTCGAGACTTAGCCGGATA
CATCACTAGCACGAATGCTCTCGAGACTTAGCCCGGATACATACTAGCACGAATGCTCCTCGAGA
CT
Found at i:82672201 original size:37 final size:38
Alignment explanation
Indices: 82672127--82672206 Score: 117
Period size: 37 Copynumber: 2.1 Consensus size: 38
82672117 TTATTACGAA
* * *
82672127 GTCTTACCCGGACATTAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAAATCCCCACACGAAGTCATCGG
*
82672165 GTCTTACCCGGACA-AAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAAATCCCCACACGAAGTCATCGG
82672202 GTCTT
1 GTCTT
82672207 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
37 24 0.63
38 14 0.37
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (38 bp):
GTCTTACCCGGACATAAATCCCCACACGAAGTCATCGG
Found at i:82672720 original size:49 final size:47
Alignment explanation
Indices: 82672360--82673054 Score: 1165
Period size: 47 Copynumber: 14.7 Consensus size: 47
82672350 TCCATATCCG
82672360 TCACATATATACAC-TTCACATTCATTCACA----CCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCA-TCACATCGGCCATTAGGCCTTA
82672403 TCACATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
82672449 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
82672496 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
82672543 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
82672590 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
82672637 TCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATAT-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
82672685 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
82672734 TCACATATATACACTTTCACATTCATCATTCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACA-T--TCA-TCACATCGGCCATTAGGCCTTA
82672785 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
82672832 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
82672881 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
82672928 TCACATATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
82672976 TCACATATATACACTTTCACATTCATCACATCGGGCCATT-GGCCTTA
1 TCACATATATACACTTTCACATTCATCACATC-GGCCATTAGGCCTTA
* * *
82673023 TCTCATTATATGCA-TGTTCACATCCATCACAT
1 TCACA-TATATACACT-TTCACATTCATCACAT
82673055 AGAATCCTAA
Statistics
Matches: 628, Mismatches: 3, Indels: 37
0.94 0.00 0.06
Matches are distributed among these distances:
43 19 0.03
44 10 0.02
46 74 0.12
47 271 0.43
48 77 0.12
49 124 0.20
50 10 0.02
51 43 0.07
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:82672999 original size:338 final size:328
Alignment explanation
Indices: 82672364--82673054 Score: 1171
Period size: 338 Copynumber: 2.1 Consensus size: 328
82672354 TATCCGTCAC
82672364 ATATATACAC-TTCACATTCATTCACA-CCATTAGGCCTTATCACATATATACACTTTCACATTC
1 ATATATACACTTTCACATTCA-TCACATCCATTAGGCCTTATCACATATATACACTTTCACATTC
82672427 ATCACATCGGCCATTAGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65 ATCACATCGGCCATTAGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82672492 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
130 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82672557 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
195 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
82672622 GGCCATTAGGCCTTATCACATATATAACACTTTCACATTCATCACATC-GGCCATTAGGCCTTAT
260 GGCCATTAGGCCTTATCACATATATAACACTTTCACATTCATCACATCGGGCCATT-GGCCTTAT
82672686 CACAT
324 CACAT
82672691 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACAT---CCATTAGGCCTTATCACATATATACACTTTCACA-
82672756 TCATCATTCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
62 T--TCA-TCACATCGGCCATTA-GCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
82672821 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
123 ATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
82672886 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACA
186 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACA
82672951 TTCATCACATCGGCCATTA-GCCTTATCACATATAT-ACACTTTCACATTCATCACATCGGGCCA
249 TTCATCACATCGGCCATTAGGCCTTATCACATATATAACACTTTCACATTCATCACATCGGGCCA
*
82673014 TTGGCCTTATCTCAT
314 TTGGCCTTATCACAT
* *
82673029 -TATATGCA-TGTTCACATCCATCACAT
1 ATATATACACT-TTCACATTCATCACAT
82673055 AGAATCCTAA
Statistics
Matches: 345, Mismatches: 3, Indels: 22
0.93 0.01 0.06
Matches are distributed among these distances:
327 15 0.04
328 10 0.03
331 34 0.10
332 1 0.00
334 3 0.01
335 15 0.04
336 58 0.17
337 22 0.06
338 128 0.37
339 23 0.07
340 36 0.10
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (328 bp):
ATATATACACTTTCACATTCATCACATCCATTAGGCCTTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACATATATAACACTTTCACATTCATCACATCGGGCCATTGGCCTTATCA
CAT
Found at i:82676638 original size:40 final size:40
Alignment explanation
Indices: 82676608--82677035 Score: 662
Period size: 40 Copynumber: 10.8 Consensus size: 40
82676598 AGCATGATTA
* * *
82676608 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
82676648 CTCTTCGGG-TTTAGCACGGATATATTACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
82676687 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
82676727 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
82676767 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
82676807 CTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
82676847 CTCTTCGAGACTTAGCCCAGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
82676887 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
*
82676927 CTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
*
82676967 CTCCTC-GGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
*
82677006 CTCCTCGGGACTTAGCCCGGATATATCACT
1 CTCTTCGGGACTTAGCCCGGATATATCACT
82677036 CTCAATTCTC
Statistics
Matches: 368, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
39 71 0.19
40 297 0.81
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:82678299 original size:37 final size:37
Alignment explanation
Indices: 82678249--82678327 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
82678239 TTATTACGAA
* * *
82678249 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
82678286 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
82678323 GTCTT
1 GTCTT
82678328 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:82678567 original size:47 final size:47
Alignment explanation
Indices: 82678445--82679191 Score: 1282
Period size: 47 Copynumber: 15.7 Consensus size: 47
82678435 CCCTTCGGGA
* * * * * *
82678445 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82678492 CCTGTCACATA-ATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82678538 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82678585 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82678632 CGTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82678681 CTTATCACATTTATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
82678730 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82678777 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82678824 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82678873 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82678920 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82678967 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82679014 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82679061 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82679110 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
82679157 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
82679192 AGAATCCTAA
Statistics
Matches: 673, Mismatches: 17, Indels: 20
0.95 0.02 0.03
Matches are distributed among these distances:
46 40 0.06
47 447 0.66
49 186 0.28
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82678690 original size:96 final size:94
Alignment explanation
Indices: 82678445--82679191 Score: 1282
Period size: 96 Copynumber: 7.9 Consensus size: 94
82678435 CCCTTCGGGA
* * * * * * * *
82678445 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATA-ATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82678509 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
82678538 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82678603 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
82678632 CGTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TATAT
*
82678697 ACACTTTCACATTCATCACATCGACCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
82678730 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82678795 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
82678824 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
82678889 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
82678920 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82678985 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
82679014 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
82679079 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
82679110 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
82679174 TGTTCACATCCATCACAT
66 T-TTCACATTCATCACAT
82679192 AGAATCCTAA
Statistics
Matches: 629, Mismatches: 15, Indels: 19
0.95 0.02 0.03
Matches are distributed among these distances:
93 51 0.08
94 251 0.40
96 283 0.45
98 44 0.07
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:82678742 original size:143 final size:140
Alignment explanation
Indices: 82678445--82679191 Score: 1228
Period size: 143 Copynumber: 5.2 Consensus size: 140
82678435 CCCTTCGGGA
* * * * * * * *
82678445 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATA-ATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82678509 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
82678574 GGCCATTAGGC
130 GGCCATTAGGC
*
82678585 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCGTATCACATATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
82678650 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTATATACACTTTCACATTCATCA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TATATACACTTTCACATTCATCA
*
82678715 CATCGACCATTAGGC
126 CATCGGCCATTAGGC
82678730 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82678795 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
82678860 TCGGCCATTAGGC
128 TCGGCCATTAGGC
82678873 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82678938 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
82679003 GGCCATTAGGC
130 GGCCATTAGGC
82679014 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
82679079 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
63 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
82679144 TCGGCCATTAGGC
128 TCGGCCATTAGGC
* * *
82679157 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACA-ATATACACT-TTCACATTCATCACAT
82679192 AGAATCCTAA
Statistics
Matches: 583, Mismatches: 14, Indels: 17
0.95 0.02 0.03
Matches are distributed among these distances:
140 47 0.08
141 94 0.16
142 4 0.01
143 346 0.59
145 92 0.16
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (140 bp):
CTTATCACAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGC
Found at i:82682994 original size:19 final size:19
Alignment explanation
Indices: 82682957--82682994 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
82682947 CAACTCAGAA
*
82682957 TTGCACACGGTTTGAGCAC
1 TTGCACACGGTGTGAGCAC
82682976 TTGCACACGGGTGTG-GCAC
1 TTGCACAC-GGTGTGAGCAC
82682995 AGGTCATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (19 bp):
TTGCACACGGTGTGAGCAC
Found at i:82688596 original size:55 final size:55
Alignment explanation
Indices: 82688458--82688596 Score: 136
Period size: 55 Copynumber: 2.5 Consensus size: 55
82688448 AAGGCCTACA
* * ** *
82688458 CCCGTGTTGTTTTGGTAGGTTCGCCCAAGGTTGCTTGGCACGGGTGTGTCACACG
1 CCCGTGTTGTTTTGGCAGGTTCGCCCACGGTTGCAAGGCACGGGCGTGTCACACG
** * * * * * *
82688513 CCCGTGTT-AATTGGACAAGTTTGACCACGGTTTCAAGGGACGGGCGTGTCGCACG
1 CCCGTGTTGTTTTGG-CAGGTTCGCCCACGGTTGCAAGGCACGGGCGTGTCACACG
*
82688568 CCTGTGTTGTTTTGGCAGGTTCGCCCACG
1 CCCGTGTTGTTTTGGCAGGTTCGCCCACG
82688597 ACCATGTCGC
Statistics
Matches: 63, Mismatches: 19, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
54 4 0.06
55 55 0.87
56 4 0.06
ACGTcount: A:0.14, C:0.24, G:0.33, T:0.29
Consensus pattern (55 bp):
CCCGTGTTGTTTTGGCAGGTTCGCCCACGGTTGCAAGGCACGGGCGTGTCACACG
Found at i:82693141 original size:48 final size:48
Alignment explanation
Indices: 82693087--82693185 Score: 153
Period size: 48 Copynumber: 2.1 Consensus size: 48
82693077 GGAGGAAAAG
* *
82693087 TCCCTGTTGAAGAGTAGATCATTCATAATAAAGTGGAGTTGCATGTAA
1 TCCCTGTTGAAGAGTAGATCATTCATAATAAAGCGGAGTTGCATGCAA
* * *
82693135 TCCCTGTTTAAGAGTAGATCATTCATAATTAAGCGTAGTTGCATGCAA
1 TCCCTGTTGAAGAGTAGATCATTCATAATAAAGCGGAGTTGCATGCAA
82693183 TCC
1 TCC
82693186 TAGAGATAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32
Consensus pattern (48 bp):
TCCCTGTTGAAGAGTAGATCATTCATAATAAAGCGGAGTTGCATGCAA
Found at i:82700026 original size:52 final size:50
Alignment explanation
Indices: 82699899--82700191 Score: 425
Period size: 52 Copynumber: 5.9 Consensus size: 50
82699889 TTGATGTATA
*
82699899 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
82699947 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATATG
* *
82699999 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATATG
*
82700051 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* * *
82700099 AGATATGAATCTATGGTAAAGCCGAATGG-TCAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATG
*
82700149 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
82700192 GTAGGTGATG
Statistics
Matches: 221, Mismatches: 16, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
47 1 0.00
48 76 0.34
49 3 0.01
50 47 0.21
51 2 0.01
52 92 0.42
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (50 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
Found at i:82700449 original size:37 final size:37
Alignment explanation
Indices: 82700345--82700449 Score: 174
Period size: 37 Copynumber: 2.8 Consensus size: 37
82700335 ATATATTCTG
* *
82700345 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCA
82700382 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCA
1 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCA
* *
82700419 GGTAAGACCCGATAACTTCGTGTGGAGATTT
1 GGTAAGACCCGATGACTACGTGTGGAGATTT
82700450 CATCTGAGCT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCA
Found at i:82704135 original size:30 final size:30
Alignment explanation
Indices: 82704101--82704157 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
82704091 TAGGCACTTC
*
82704101 CACACGGGTAAACCACACGCCCGTGTGAGG
1 CACACGGGCAAACCACACGCCCGTGTGAGG
82704131 CACACGGGCAAACCACACGCCCGTGTG
1 CACACGGGCAAACCACACGCCCGTGTG
82704158 TCATGGCCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.37, G:0.28, T:0.09
Consensus pattern (30 bp):
CACACGGGCAAACCACACGCCCGTGTGAGG
Found at i:82709772 original size:28 final size:27
Alignment explanation
Indices: 82709715--82709866 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
82709705 TAAATTGTGC
*
82709715 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
82709742 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
82709770 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
82709797 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
82709825 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
82709852 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82709867 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:82709779 original size:55 final size:55
Alignment explanation
Indices: 82709715--82709866 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
82709705 TAAATTGTGC
*
82709715 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
82709770 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
82709825 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
82709867 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:82717815 original size:28 final size:27
Alignment explanation
Indices: 82717758--82717909 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
82717748 TAAATTGTGC
*
82717758 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
82717785 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
82717813 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
82717840 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
82717868 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
82717895 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82717910 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:82717822 original size:55 final size:55
Alignment explanation
Indices: 82717758--82717909 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
82717748 TAAATTGTGC
*
82717758 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
82717813 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
82717868 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
82717910 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:82723646 original size:28 final size:28
Alignment explanation
Indices: 82723603--82723666 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
82723593 TACGAAGTAG
* *
82723603 TTGGGCCTGATAGGCCATATGAATGTGA
1 TTGGGCCTGATAGGCCATATGAACGAGA
* *
82723631 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATAGGCCATATGAACGAGA
82723659 TTGGGCCT
1 TTGGGCCT
82723667 AAAGGGGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.20, C:0.17, G:0.36, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATAGGCCATATGAACGAGA
Found at i:82724049 original size:26 final size:27
Alignment explanation
Indices: 82723983--82724159 Score: 128
Period size: 27 Copynumber: 6.6 Consensus size: 27
82723973 TAATAAAGAG
* * *
82723983 AAATTACTGAAGTACCCCC-GATTTATA
1 AAATTACCGAAATACCCCCAG-TTTGTA
*
82724010 AAATTATCGAAATACCCCCAGTTTGTA
1 AAATTACCGAAATACCCCCAGTTTGTA
* * *
82724037 AAATTACCG-AATACCCCTAATTTGAA
1 AAATTACCGAAATACCCCCAGTTTGTA
* * *
82724063 AAATTACCGAAATACCCTC-GATTGTG
1 AAATTACCGAAATACCCCCAGTTTGTA
* ** * *
82724089 AAACTACTAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCCCAGTTTGTA
* ** *
82724116 AAATTATCGAAATA-CCCTTGTAGTGTA
1 AAATTACCGAAATACCCCCAGT-TTGTA
*
82724143 AAATTATCGAAATACCC
1 AAATTACCGAAATACCC
82724160 TTGTAGTGTA
Statistics
Matches: 116, Mismatches: 29, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
26 45 0.39
27 68 0.59
28 3 0.03
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCCCAGTTTGTA
Found at i:82724066 original size:53 final size:52
Alignment explanation
Indices: 82723983--82724132 Score: 142
Period size: 53 Copynumber: 2.8 Consensus size: 52
82723973 TAATAAAGAG
* ** *
82723983 AAATTACTGAAGTACCCCCGATTT-ATAAAATTATCGAAATACCCCCAGTTTGTA
1 AAATTACAGAA-TACCCCTAATTTGA-AAAATTATCGAAATACCCCC-GATTGTA
* * * *
82724037 AAATTACCGAATACCCCTAATTTGAAAAATTACCGAAATACCCTCGATTGTG
1 AAATTACAGAATACCCCTAATTTGAAAAATTATCGAAATACCCCCGATTGTA
* * *
82724089 AAACTACTAAAATA-CCCTCAATTTGTAAAATTATCGAAATACCC
1 AAATTAC-AGAATACCCCT-AATTTGAAAAATTATCGAAATACCC
82724133 TTGTAGTGTA
Statistics
Matches: 81, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
52 15 0.19
53 55 0.68
54 11 0.14
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (52 bp):
AAATTACAGAATACCCCTAATTTGAAAAATTATCGAAATACCCCCGATTGTA
Found at i:82724133 original size:27 final size:27
Alignment explanation
Indices: 82724003--82724160 Score: 137
Period size: 27 Copynumber: 5.9 Consensus size: 27
82723993 AGTACCCCCG
* *
82724003 ATTTATAAAATTATCGAAATACCCCCA
1 ATTTGTAAAATTATCGAAATACCCTCA
* *
82724030 GTTTGTAAAATTACCG-AATACCC-CTA
1 ATTTGTAAAATTATCGAAATACCCTC-A
* * *
82724056 ATTTGAAAAATTACCGAAATACCCTCG
1 ATTTGTAAAATTATCGAAATACCCTCA
* * *
82724083 A-TTGTGAAACTA-CTAAAATACCCTCA
1 ATTTGTAAAATTATC-GAAATACCCTCA
*
82724109 ATTTGTAAAATTATCGAAATACCCT-T
1 ATTTGTAAAATTATCGAAATACCCTCA
* *
82724135 GTAGTGTAAAATTATCGAAATACCCT
1 AT-TTGTAAAATTATCGAAATACCCT
82724161 TGTAGTGTAA
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
25 2 0.02
26 42 0.39
27 61 0.57
28 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
ATTTGTAAAATTATCGAAATACCCTCA
Found at i:82724133 original size:53 final size:53
Alignment explanation
Indices: 82724003--82724133 Score: 149
Period size: 53 Copynumber: 2.5 Consensus size: 53
82723993 AGTACCCCCG
* * * * **
82724003 ATTTATAAAATTATCGAAATACCCCCAGTTTGTAAAATTACCGAATACCCCTA
1 ATTTGTAAAATTATCGAAATACCCTCAGATTGTAAAACTACAAAATACCCCTA
* * *
82724056 ATTTGAAAAATTACCGAAATACCCTC-GATTGTGAAACTACTAAAATA-CCCTCA
1 ATTTGTAAAATTATCGAAATACCCTCAGATTGTAAAACTAC-AAAATACCCCT-A
82724109 ATTTGTAAAATTATCGAAATACCCT
1 ATTTGTAAAATTATCGAAATACCCT
82724134 TGTAGTGTAA
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
52 15 0.23
53 50 0.77
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (53 bp):
ATTTGTAAAATTATCGAAATACCCTCAGATTGTAAAACTACAAAATACCCCTA
Done.