Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 254 of 325
Found at i:82724161 original size:27 final size:27
Alignment explanation
Indices: 82724112--82724200 Score: 133
Period size: 27 Copynumber: 3.3 Consensus size: 27
82724102 ACCCTCAATT
82724112 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
82724139 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
* * * *
82724166 TGTAAAATAACCGACATACCCCTGTAG
1 TGTAAAATTATCGAAATACCCTTGTAG
*
82724193 GGTAAAAT
1 TGTAAAAT
82724201 GACTATTTTG
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTGTAG
Found at i:82727502 original size:24 final size:25
Alignment explanation
Indices: 82727466--82727544 Score: 76
Period size: 24 Copynumber: 3.3 Consensus size: 25
82727456 CTTCTTCGTT
* *
82727466 TTCACCTCCACCATTGTGCTT-ATC
1 TTCATCTCTACCATTGTGCTTCATC
**
82727490 TTCATCTCTACCATCAT-CTTCATC
1 TTCATCTCTACCATTGTGCTTCATC
*
82727514 TGCATCTCTACC-TTCG-GCTTCATC
1 TTCATCTCTACCATT-GTGCTTCATC
82727538 TTCATCT
1 TTCATCT
82727545 TCTTCTCCAT
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
23 4 0.09
24 40 0.91
ACGTcount: A:0.16, C:0.37, G:0.06, T:0.41
Consensus pattern (25 bp):
TTCATCTCTACCATTGTGCTTCATC
Found at i:82728486 original size:18 final size:18
Alignment explanation
Indices: 82728463--82728499 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
82728453 TCCGACTCGG
82728463 CATATGACATCCATTCAA
1 CATATGACATCCATTCAA
82728481 CATATGACATCCATTCAA
1 CATATGACATCCATTCAA
82728499 C
1 C
82728500 CTATAATACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.30, G:0.05, T:0.27
Consensus pattern (18 bp):
CATATGACATCCATTCAA
Found at i:82737901 original size:6 final size:6
Alignment explanation
Indices: 82737883--82737988 Score: 110
Period size: 6 Copynumber: 17.3 Consensus size: 6
82737873 AAGAAACATT
* *
82737883 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
82737932 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
82737981 ATCAGA AT
1 ATCAGA AT
82737989 ATGAATGCAA
Statistics
Matches: 84, Mismatches: 8, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
5 4 0.05
6 72 0.86
7 6 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:82737940 original size:43 final size:43
Alignment explanation
Indices: 82737892--82737988 Score: 158
Period size: 43 Copynumber: 2.3 Consensus size: 43
82737882 TATCAGAACT
*
82737892 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGACAAAATC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTAACAAAATC
* *
82737935 AGAATCAGAATCAGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTAACAAAATC
*
82737978 AAAATCAGAAT
1 AGAATCAGAAT
82737989 ATGAATGCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (43 bp):
AGAATCAGAATCAGAATCAGAATCAGAATCAGGTAACAAAATC
Found at i:82738137 original size:26 final size:26
Alignment explanation
Indices: 82738107--82738225 Score: 132
Period size: 27 Copynumber: 4.5 Consensus size: 26
82738097 AGCATGGCTG
* **
82738107 CCAGAACAGATAATGTGACAGAATCA
1 CCAGAACAGATAATGTGGCAGAGCCA
82738133 CCAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
*
82738160 CCAAAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
82738187 CCA-AATCAGATAATTGTGGCATAGCCA
1 CCAGAA-CAGATAA-TGTGGCAGAGCCA
* *
82738214 CTAGGACAGATA
1 CCAGAACAGATA
82738226 TATATATGTG
Statistics
Matches: 81, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
26 17 0.21
27 61 0.75
28 3 0.04
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:82738528 original size:27 final size:27
Alignment explanation
Indices: 82738498--82738857 Score: 383
Period size: 27 Copynumber: 13.3 Consensus size: 27
82738488 GGGGTAAAAT
* *
82738498 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
82738525 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
82738552 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
82738579 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * *
82738606 GATAATTCTACCCTACATGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
82738633 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
82738660 AGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
82738687 GGT-ATTTCTATCCTAC-AGGGATATTTC
1 GGTAATTT-TACCCTACAAGGG-TATTTC
82738714 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
82738741 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
82738768 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
82738795 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
82738822 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
**
82738849 AATAATTTT
1 GGTAATTTT
82738858 GTAAATCGAT
Statistics
Matches: 291, Mismatches: 34, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
26 12 0.04
27 266 0.91
28 13 0.04
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:82738545 original size:54 final size:54
Alignment explanation
Indices: 82738502--82738848 Score: 480
Period size: 54 Copynumber: 6.4 Consensus size: 54
82738492 TAAAATGGTA
* * *
82738502 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * * * * *
82738555 AATTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGAT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * ** *
82738609 AATTCTACCCTACATGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * * *
82738663 ATTTCTACCCTACAGGGGTATTTCGGTATTTCTATCCTACAGGGATATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
*
82738717 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* *
82738771 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* *
82738825 AATTCTACCCTACAGGGGTATTTC
1 ATTTCTACCCTACAAGGGTATTTC
82738849 AATAATTTTG
Statistics
Matches: 260, Mismatches: 33, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
53 3 0.01
54 257 0.99
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
Found at i:82738622 original size:81 final size:81
Alignment explanation
Indices: 82738502--82738848 Score: 480
Period size: 81 Copynumber: 4.3 Consensus size: 81
82738492 TAAAATGGTA
* * *
82738502 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
* *
82738566 ACAGGGGTATTTTGGT
66 ACAAGGGTATTTCGGT
* * * *
82738582 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACATGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
* *
82738647 ACAGGGGTATTTCAGT
66 ACAAGGGTATTTCGGT
* * * * *
82738663 ATTTCTACCCTACAGGGGTATTTCGGTATTTCTATCCTACAGGGATATTTCGGTATTTCTACCCT
1 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
82738728 ACAAGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* * * * * *
82738744 AATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCT
1 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
82738809 ACAAGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
*
82738825 AATTCTACCCTACAGGGGTATTTC
1 ATTTCTACCCTACAGGGGTATTTC
82738849 AATAATTTTG
Statistics
Matches: 242, Mismatches: 24, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
80 4 0.02
81 238 0.98
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (81 bp):
ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTCGGT
Found at i:82738925 original size:27 final size:26
Alignment explanation
Indices: 82738895--82739153 Score: 178
Period size: 27 Copynumber: 9.6 Consensus size: 26
82738885 ATAAATCAAT
*
82738895 GGTACTTTGGTAATTTTACAAGTCGAG
1 GGTATTTTGGTAATTTTACAA-TCGAG
***
82738922 GGTATTTCAATAATTTTACAAGTCGAG
1 GGTATTTTGGTAATTTTACAA-TCGAG
* ** *
82738949 AGTATTTCAGTAATTTCACAAATC-AGG
1 GGTATTTTGGTAATTTTAC-AATCGA-G
* *
82738976 GGTATTTTGGTAATTTTACAAACTAG
1 GGTATTTTGGTAATTTTACAATCGAG
* * *
82739002 AGGTATTTTGATAATTTTACAAACCAGG
1 -GGTATTTTGGTAATTTTACAATCGA-G
* *
82739030 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAATCGA-G
* * * *
82739057 GGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTA-CAATCGAG
* * * *
82739084 GGTATTCTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAATCGA-G
** * *
82739111 GGTATTTTGGTAATTTTGTTAACCAAG
1 GGTATTTTGGTAATTTT-ACAATCGAG
82739138 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
82739154 CGTAAACTAA
Statistics
Matches: 192, Mismatches: 32, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
26 9 0.05
27 172 0.90
28 11 0.06
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAATCGAG
Found at i:82739008 original size:54 final size:54
Alignment explanation
Indices: 82738895--82739153 Score: 268
Period size: 54 Copynumber: 4.8 Consensus size: 54
82738885 ATAAATCAAT
* ** * *** * *
82738895 GGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTAC-AAGTCGA
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGA
** * * *
82738948 GAGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGA
1 G-GTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGA
* * *
82739003 GGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGA
* * * * * *
82739057 GGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGA
***
82739111 GGTATTTTGGTAATTTTGTTAACCAAGGGTATTTTGGTAATTT
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTT
82739154 CGTAAACTAA
Statistics
Matches: 174, Mismatches: 30, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
53 1 0.01
54 167 0.96
55 6 0.03
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGA
Found at i:82739035 original size:81 final size:80
Alignment explanation
Indices: 82738895--82739153 Score: 265
Period size: 81 Copynumber: 3.2 Consensus size: 80
82738885 ATAAATCAAT
* * * * ** * **
82738895 GGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAAGTC-GAGAGTATTTCA
1 GGTATTTTGGTAATTTTACAAACTAGAGGGTATTT-TATAATTTTACAAACCAG-GGGTATTTTG
*
82738958 GTAATTTCACAAATCAGG
64 GTAATTTTACAAA-CAGG
82738976 GGTATTTTGGTAATTTTACAAACTAGA-GGTATTTTGATAATTTTACAAACCAGGGGTATTTTGG
1 GGTATTTTGGTAATTTTACAAACTAGAGGGTATTTT-ATAATTTTACAAACCAGGGGTATTTTGG
82739040 TAATTTTACAAACTAGG
65 TAATTTTACAAAC-AGG
* * * *
82739057 GGTATTTTGGTGATTTTATAAACCA-AGGGTATTCTAGTAATTTTACAAACCAGGGGTATTTTGG
1 GGTATTTTGGTAATTTTACAAACTAGAGGGTATTTTA-TAATTTTACAAACCAGGGGTATTTTGG
** * *
82739121 TAATTTTGTTAACCAAG
65 TAATTTT-ACAAACAGG
82739138 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
82739154 CGTAAACTAA
Statistics
Matches: 152, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
80 3 0.02
81 140 0.92
82 9 0.06
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (80 bp):
GGTATTTTGGTAATTTTACAAACTAGAGGGTATTTTATAATTTTACAAACCAGGGGTATTTTGGT
AATTTTACAAACAGG
Found at i:82740314 original size:68 final size:65
Alignment explanation
Indices: 82740100--82740352 Score: 203
Period size: 68 Copynumber: 3.8 Consensus size: 65
82740090 CTTAATTTTG
* ** * *
82740100 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTA-TCTCG
1 GCTCTCTTGT-CTACATGGTGTACACACAGTACCACCCATGCGACCTAGCTACA-TATATTCTCG
82740161 TA
64 TA
* * * * * *
82740163 GCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACGCATGCAACCTAGCTACATATA-TCCC
1 GCTCTCTTGTCTACATGGTGTAC-ACA-C-AGTACCACCCATGCGACCTAGCTACATATATTCTC
82740227 GTA
63 GTA
* *
82740230 GCTCCCTTGTCTACATGGTGTACACACAGTATCACCCATGCGACCTAGCTACATCATAATGTCTC
1 GCTCTCTTGTCTACATGGTGTACACACAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TCTC
82740295 GTA
63 GTA
* * * * ** *
82740298 GCTCTCTTGTAC-ACATGATGTGCACTCAGCACCATACATGTGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGGTGTACACACAGTACCACCCATGCGACCTAGCTACATA
82740353 CCATCTATAT
Statistics
Matches: 151, Mismatches: 28, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.13
64 24 0.16
65 3 0.02
66 21 0.14
67 31 0.21
68 51 0.34
69 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.28
Consensus pattern (65 bp):
GCTCTCTTGTCTACATGGTGTACACACAGTACCACCCATGCGACCTAGCTACATATATTCTCGTA
Found at i:82745206 original size:37 final size:37
Alignment explanation
Indices: 82745153--82745255 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
82745143 CGAATAGTCC
*
82745153 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
82745190 CCGCACGTAGTCATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
82745227 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
82745256 ATACATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:82745426 original size:48 final size:48
Alignment explanation
Indices: 82745366--82745640 Score: 424
Period size: 48 Copynumber: 5.7 Consensus size: 48
82745356 CGCCATTTGG
* * *
82745366 CACATTCGCCATTCGGCTTTACCACATATACATATCTTATATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
*
82745414 CACATTATCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
* *
82745462 CACATTCGCCATTCGGCTTTACCACATATACATATCTCATACATATCT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
82745510 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
* * * * *
82745558 CACATTCGCCATTCGGCTTTACCACATACACATATCACACATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
* * *
82745606 CACATTAGCCATTCGGCTTCACCACACACACATAT
1 CACATTAGCCATTCGGCTTTACCACATATACATAT
82745641 ATTTATCTTG
Statistics
Matches: 210, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 210 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
Found at i:82748534 original size:12 final size:12
Alignment explanation
Indices: 82748517--82748577 Score: 52
Period size: 12 Copynumber: 5.1 Consensus size: 12
82748507 GCTATAGAGG
*
82748517 CTGAGCCAGAGC
1 CTGAGCCCGAGC
*
82748529 CCGAGCCCGAG-
1 CTGAGCCCGAGC
*
82748540 CTAGAACCCGAGC
1 CT-GAGCCCGAGC
* *
82748553 CTGAGCTCTAGC
1 CTGAGCCCGAGC
*
82748565 CTGAGCCCAAGC
1 CTGAGCCCGAGC
82748577 C
1 C
82748578 CGACCGGTCG
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
11 1 0.03
12 35 0.92
13 2 0.05
ACGTcount: A:0.23, C:0.39, G:0.28, T:0.10
Consensus pattern (12 bp):
CTGAGCCCGAGC
Found at i:82749139 original size:62 final size:62
Alignment explanation
Indices: 82749061--82749406 Score: 548
Period size: 62 Copynumber: 5.6 Consensus size: 62
82749051 TGATTAGTTG
* * * *
82749061 CAACATTAAAACTTGGAACAAACTTTATAATATAAATTTTGTAATATAAATTAATTACATTA
1 CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACATTA
* * *
82749123 CAACATAAAAAATTGGATCAAACTTTGTAATATAAATTTTGTTATATAAATTAAATATATTA
1 CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACATTA
* *
82749185 CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTATAATATAAATTAAATACATTA
1 CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACATTA
* * * *
82749247 CAACATAAAAAATTGGAACAAACTATGTAATATAAATTTTGTTATATAAATTCAATATATTA
1 CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACATTA
* *
82749309 CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTGGTTACATAAATTAAATACATTA
1 CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACATTA
*
82749371 CAACATTAAAAATTAGAACAAACTTTGTAATATAAA
1 CAACATTAAAAATTGGAACAAACTTTGTAATATAAA
82749407 ATAGGTACAT
Statistics
Matches: 259, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 259 1.00
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.35
Consensus pattern (62 bp):
CAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAATACATTA
Found at i:82752632 original size:3 final size:3
Alignment explanation
Indices: 82752626--82752656 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
82752616 CAACTACTAA
82752626 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
82752657 ACTAAATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:82755960 original size:39 final size:40
Alignment explanation
Indices: 82755906--82756043 Score: 183
Period size: 40 Copynumber: 3.5 Consensus size: 40
82755896 AAACCAAGTA
* *
82755906 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
82755945 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
82755985 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
82756025 CCTTCCGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
82756044 TTATTATCCG
Statistics
Matches: 89, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
39 15 0.17
40 74 0.83
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82764107 original size:40 final size:40
Alignment explanation
Indices: 82764030--82764207 Score: 229
Period size: 40 Copynumber: 4.5 Consensus size: 40
82764020 AAACCAAGTA
* * *
82764030 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
*
82764069 CCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* *
82764109 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* *
82764149 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACT-AGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACAAATG
82764189 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
82764208 TTATCATCCG
Statistics
Matches: 123, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 15 0.12
40 108 0.88
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:82766386 original size:40 final size:40
Alignment explanation
Indices: 82766336--82766431 Score: 97
Period size: 40 Copynumber: 2.5 Consensus size: 40
82766326 TTTATGGTAC
* * *
82766336 CATTTGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCA
1 CATTTAGTGTGTAGGGTTGGATGGGTCGATTCTATCCCCA
* ** * *
82766376 TATTTAGTGTGTAAAGCTGGGTGGGTCGATTCTATCCCCA
1 CATTTAGTGTGTAGGGTTGGATGGGTCGATTCTATCCCCA
*
82766416 CA--TAGTGTGTTGGGTT
1 CATTTAGTGTGTAGGGTT
82766432 AGACGAAGAT
Statistics
Matches: 43, Mismatches: 13, Indels: 2
0.74 0.22 0.03
Matches are distributed among these distances:
38 10 0.23
40 33 0.77
ACGTcount: A:0.17, C:0.14, G:0.31, T:0.39
Consensus pattern (40 bp):
CATTTAGTGTGTAGGGTTGGATGGGTCGATTCTATCCCCA
Found at i:82770478 original size:12 final size:12
Alignment explanation
Indices: 82770461--82770486 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
82770451 AAGTATTTGA
82770461 AATATTTTTCTG
1 AATATTTTTCTG
82770473 AATATTTTTCTG
1 AATATTTTTCTG
82770485 AA
1 AA
82770487 ATTATGGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (12 bp):
AATATTTTTCTG
Found at i:82772832 original size:40 final size:38
Alignment explanation
Indices: 82772788--82772887 Score: 119
Period size: 40 Copynumber: 2.6 Consensus size: 38
82772778 ACGGTACCAT
* * *
82772788 TTGGTGTGTAGGGTTGAATGGGTTGATTTTATCCCCATAC
1 TTGGTGTGTAGGGTTGGATGGGTCGATTCTATCCCC--AC
* *
82772828 TTGGTGTGTAGGGCTGGGTGGGTCGATTCTATCCCCAC
1 TTGGTGTGTAGGGTTGGATGGGTCGATTCTATCCCCAC
* *
82772866 ATGGTGTGTTGGGTTGGATGGG
1 TTGGTGTGTAGGGTTGGATGGG
82772888 ATAGCATGCA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 20 0.39
40 31 0.61
ACGTcount: A:0.13, C:0.13, G:0.38, T:0.36
Consensus pattern (38 bp):
TTGGTGTGTAGGGTTGGATGGGTCGATTCTATCCCCAC
Found at i:82780591 original size:26 final size:26
Alignment explanation
Indices: 82780557--82780608 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
82780547 GATTTAATTC
82780557 TTTCTCATAGTCATCAAAGAAAGGAA
1 TTTCTCATAGTCATCAAAGAAAGGAA
82780583 TTTCTCATAGTCATCAAAGAAAGGAA
1 TTTCTCATAGTCATCAAAGAAAGGAA
82780609 GTGGATATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (26 bp):
TTTCTCATAGTCATCAAAGAAAGGAA
Found at i:82785815 original size:16 final size:16
Alignment explanation
Indices: 82785794--82785843 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
82785784 CGAAAATGAT
82785794 ATAATAAGTATAATAA
1 ATAATAAGTATAATAA
*
82785810 ATAAT-AGTGTAA-AA
1 ATAATAAGTATAATAA
*
82785824 A-AATAA-TACAATAA
1 ATAATAAGTATAATAA
82785838 ATAATA
1 ATAATA
82785844 GGAAAATAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
13 6 0.21
14 7 0.25
15 10 0.36
16 5 0.18
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (16 bp):
ATAATAAGTATAATAA
Found at i:82787572 original size:22 final size:22
Alignment explanation
Indices: 82787547--82787590 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
82787537 AGTTGCTTTC
**
82787547 TTTAAATATATTATATAAAAAT
1 TTTAAATATAAAATATAAAAAT
82787569 TTTAAATATAAAATATAAAAAT
1 TTTAAATATAAAATATAAAAAT
82787591 AGTTTTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
TTTAAATATAAAATATAAAAAT
Found at i:82790356 original size:3 final size:3
Alignment explanation
Indices: 82790348--82790375 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
82790338 GTTATTTACC
82790348 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
82790376 TCCTTTCCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:82792583 original size:106 final size:107
Alignment explanation
Indices: 82792393--82792606 Score: 403
Period size: 106 Copynumber: 2.0 Consensus size: 107
82792383 GTTTTCTAAA
*
82792393 TGCACCGTATTTTCATAGGTATTTTCGAAGGTAAATGAAAAAAAAAATTATTAATTTTTGTTGCT
1 TGCACCGTATTTTCATAGGTATTTTCGAAGGTAAATGAAAAAAAAAATTATTAATTTTTGTTACT
82792458 GCCTCCTTTAATGGAGGCACCAAATTGGATTAAAAAAAATAT
66 GCCTCCTTTAATGGAGGCACCAAATTGGATTAAAAAAAATAT
*
82792500 TGCACCGTATTTTCATAGGTATTTTCGAAGGTAAATG-GAAAAAAAATTATTAATTTTTGTTACT
1 TGCACCGTATTTTCATAGGTATTTTCGAAGGTAAATGAAAAAAAAAATTATTAATTTTTGTTACT
82792564 GCCTCCTTTAATGGAGGCACCAAATTGGATTAAAAAAAATAT
66 GCCTCCTTTAATGGAGGCACCAAATTGGATTAAAAAAAATAT
82792606 T
1 T
82792607 TGTTAGTGCC
Statistics
Matches: 105, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
106 68 0.65
107 37 0.35
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (107 bp):
TGCACCGTATTTTCATAGGTATTTTCGAAGGTAAATGAAAAAAAAAATTATTAATTTTTGTTACT
GCCTCCTTTAATGGAGGCACCAAATTGGATTAAAAAAAATAT
Found at i:82793382 original size:30 final size:30
Alignment explanation
Indices: 82793347--82793406 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
82793337 TATTTTATTA
82793347 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
82793377 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
82793407 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:82795023 original size:13 final size:13
Alignment explanation
Indices: 82794980--82795013 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
82794970 CAATACTTTT
82794980 GAAAAGTGTTGTG
1 GAAAAGTGTTGTG
82794993 GAAAAGTGTTGTG
1 GAAAAGTGTTGTG
82795006 GAAAAGTG
1 GAAAAGTG
82795014 CTTTTGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.38, T:0.26
Consensus pattern (13 bp):
GAAAAGTGTTGTG
Found at i:82802647 original size:19 final size:19
Alignment explanation
Indices: 82802623--82802665 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
82802613 AAATATATAT
82802623 TTAATAATACACCACATAA
1 TTAATAATACACCACATAA
* *
82802642 TTAATAGTTCACCACATAA
1 TTAATAATACACCACATAA
82802661 -TAATA
1 TTAATA
82802666 TTGTCCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.49, C:0.19, G:0.02, T:0.30
Consensus pattern (19 bp):
TTAATAATACACCACATAA
Found at i:82804762 original size:50 final size:50
Alignment explanation
Indices: 82804680--82805006 Score: 510
Period size: 50 Copynumber: 6.5 Consensus size: 50
82804670 CCATGGCAAC
* *
82804680 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
82804730 AAGTGATAAGTGATAGCTTCGGCTATATTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
82804780 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
82804830 AAGTGATAAGTGATAGCTTCAGCTACACTTATTTGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
82804880 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
82804930 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGGC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * *
82804981 AAGTAAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
82805007 CTGATCAATG
Statistics
Matches: 256, Mismatches: 20, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
50 233 0.91
51 23 0.09
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:82805024 original size:31 final size:31
Alignment explanation
Indices: 82804986--82805044 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
82804976 ATGGCAAGTA
82804986 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
82805017 AAAAGTGGTAGCTTCGGCTACCTGATCA
1 AAAAGTGGTAGCTTCGGCTACCTGATCA
82805045 TCGGCTACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCAATG
Found at i:82805052 original size:46 final size:46
Alignment explanation
Indices: 82804999--82805090 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
82804989 AGTGGTAGCT
* *
82804999 TCGGCTACCTGATCAATGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
* * *
82805045 TCGGCTACTTGATTAGTGAAAAATGGTAGCTCCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
82805091 GTGAATAGTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (46 bp):
TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
Found at i:82805094 original size:31 final size:31
Alignment explanation
Indices: 82805046--82805114 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
82805036 ACCTGATCAT
* * *
82805046 CGGCTACTTGATTAGTGAAAAATGGTAGCTC
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
* * *
82805077 CGGCTACCTGATCAGTGAATAGTGATAGCTT
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
82805108 CGGCTAC
1 CGGCTAC
82805115 AAGTGACAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (31 bp):
CGGCTACCTGATCAGTGAAAAATGATAGCTC
Found at i:82811648 original size:50 final size:50
Alignment explanation
Indices: 82811573--82811846 Score: 440
Period size: 50 Copynumber: 5.5 Consensus size: 50
82811563 CCATGGAAAC
*
82811573 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
82811623 AAGTGATAAATAATAACTTCGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
82811673 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
82811723 AAGTGATAAGTAATAGCTTTGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
82811773 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGGTCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
82811823 CAAGTGAAAAGTGGTAGCTTCGGC
1 -AAGTGATAAGTGATAGCTTCGGC
82811847 AACCTGATCA
Statistics
Matches: 205, Mismatches: 18, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
50 184 0.90
51 21 0.10
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:82811860 original size:31 final size:31
Alignment explanation
Indices: 82811825--82811973 Score: 226
Period size: 31 Copynumber: 4.8 Consensus size: 31
82811815 ACAAATGACA
*
82811825 AGTGAAAAGTGGTAGCTTCGGCAACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
82811856 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
82811887 AGTGAAAAATGGTAGCTTCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
82811918 AGTGAAAAATGGTAGCTCCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
82811949 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
82811974 AAGTGACAAG
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 107 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:82812114 original size:46 final size:47
Alignment explanation
Indices: 82811993--82812114 Score: 147
Period size: 47 Copynumber: 2.6 Consensus size: 47
82811983 GTGATTTCCC
* * *
82811993 TATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACTG
1 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATACTG
* * * *
82812040 TATAAGACCATATCTAGGATATGACATCAGTGAGATATGTGATTC-G
1 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATACTG
* * *
82812086 TGTAAGACCATAGCTGGGCTATGGCATCA
1 TATAAGACCATATCTGGGATATGGCATCA
82812115 TTATGTGAAG
Statistics
Matches: 63, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
46 25 0.40
47 38 0.60
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (47 bp):
TATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATACTG
Found at i:82818326 original size:16 final size:16
Alignment explanation
Indices: 82818305--82818350 Score: 83
Period size: 16 Copynumber: 2.8 Consensus size: 16
82818295 ACCCAACCCC
82818305 ATGCAGTATGACATGT
1 ATGCAGTATGACATGT
82818321 ATGCAGTATGACATGT
1 ATGCAGTATGACATGT
82818337 ATGACAGTATGACA
1 ATG-CAGTATGACA
82818351 GTCAGATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 19 0.66
17 10 0.34
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (16 bp):
ATGCAGTATGACATGT
Found at i:82818348 original size:8 final size:8
Alignment explanation
Indices: 82818308--82818352 Score: 65
Period size: 8 Copynumber: 5.5 Consensus size: 8
82818298 CAACCCCATG
82818308 CAGTATGA
1 CAGTATGA
82818316 CATGTATG-
1 CA-GTATGA
82818324 CAGTATGA
1 CAGTATGA
82818332 CATGTATGA
1 CA-GTATGA
82818341 CAGTATGA
1 CAGTATGA
82818349 CAGT
1 CAGT
82818353 CAGATTATAG
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
7 5 0.15
8 16 0.47
9 13 0.38
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.29
Consensus pattern (8 bp):
CAGTATGA
Found at i:82820368 original size:36 final size:36
Alignment explanation
Indices: 82820272--82820370 Score: 103
Period size: 36 Copynumber: 2.8 Consensus size: 36
82820262 ATTTTCACTA
**
82820272 AGGGTTCACATGATATATACAACTCGC--AGTTCCT
1 AGGGTTCACATGATATATATGACTCGCATAGTTCCT
* * * * * * *
82820306 AAGATTCGCATAATACATGTGTCTCGCATAGTTCCT
1 AGGGTTCACATGATATATATGACTCGCATAGTTCCT
82820342 AGGGTTCACATGATATATATGACTCGCAT
1 AGGGTTCACATGATATATATGACTCGCAT
82820371 GTAACACATA
Statistics
Matches: 47, Mismatches: 16, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
34 18 0.38
36 29 0.62
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (36 bp):
AGGGTTCACATGATATATATGACTCGCATAGTTCCT
Found at i:82822274 original size:2 final size:2
Alignment explanation
Indices: 82822267--82822294 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
82822257 ATAATTTTTA
82822267 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82822295 GCATCAATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82825582 original size:14 final size:15
Alignment explanation
Indices: 82825563--82825595 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
82825553 GAGTCAAAGC
*
82825563 TAAAAAT-TTTATAT
1 TAAAAATATTTAAAT
82825577 TAAAAATATTTAAAT
1 TAAAAATATTTAAAT
82825592 TAAA
1 TAAA
82825596 TTATTACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAAAATATTTAAAT
Found at i:82829181 original size:16 final size:16
Alignment explanation
Indices: 82829160--82829191 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82829150 CATGAGATAC
*
82829160 AACTTTACGTTAAGTT
1 AACTTTACGCTAAGTT
82829176 AACTTTACGCTAAGTT
1 AACTTTACGCTAAGTT
82829192 GAGCAAGTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (16 bp):
AACTTTACGCTAAGTT
Found at i:82829453 original size:13 final size:13
Alignment explanation
Indices: 82829435--82829460 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82829425 AAATTCTAAT
82829435 TTTTTTATTTTTA
1 TTTTTTATTTTTA
82829448 TTTTTTATTTTTA
1 TTTTTTATTTTTA
82829461 ACAAATAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:82831392 original size:13 final size:13
Alignment explanation
Indices: 82831374--82831416 Score: 59
Period size: 13 Copynumber: 3.1 Consensus size: 13
82831364 TGTTTTATAT
82831374 ATATAATATAATA
1 ATATAATATAATA
82831387 ATATAATATAATCTA
1 ATATAATATAA--TA
82831402 ATATTAATATAATA
1 ATA-TAATATAATA
82831416 A
1 A
82831417 AAAATAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 11 0.41
14 3 0.11
15 5 0.19
16 8 0.30
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (13 bp):
ATATAATATAATA
Found at i:82831411 original size:6 final size:5
Alignment explanation
Indices: 82831369--82831435 Score: 66
Period size: 5 Copynumber: 13.4 Consensus size: 5
82831359 TCTTTTGTTT
* *
82831369 TATATA TATAA TAT-A -ATAA TATAA TATAA TCTAA TATTAA TATAA TAAAA
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TA-TAA TATAA TATAA
* *
82831419 AATAA TATAT TATAA TA
1 TATAA TATAA TATAA TA
82831436 AAAATCTTAA
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
3 2 0.04
4 2 0.04
5 37 0.74
6 9 0.18
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:82831424 original size:21 final size:21
Alignment explanation
Indices: 82831376--82831439 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
82831366 TTTTATATAT
* *
82831376 ATAATATAATAATATAATATAAT
1 ATAATAT--TAATATAATAAAAA
*
82831399 CTAATATTAATATAATAAAAA
1 ATAATATTAATATAATAAAAA
*
82831420 ATAATA-TATTATAATAAAAA
1 ATAATATTAATATAATAAAAA
82831440 TCTTAACTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
20 13 0.36
21 17 0.47
23 6 0.17
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
ATAATATTAATATAATAAAAA
Found at i:82834098 original size:16 final size:16
Alignment explanation
Indices: 82834077--82834107 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82834067 CGGCAAATCC
*
82834077 CGAAATGTCGAAAAGT
1 CGAAATGCCGAAAAGT
82834093 CGAAATGCCGAAAAG
1 CGAAATGCCGAAAAG
82834108 CTAAAACTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.16, G:0.26, T:0.13
Consensus pattern (16 bp):
CGAAATGCCGAAAAGT
Found at i:82834397 original size:28 final size:29
Alignment explanation
Indices: 82834317--82834403 Score: 122
Period size: 29 Copynumber: 3.0 Consensus size: 29
82834307 AGCATGACTG
82834317 TGAATGTGATTTGGGCCTAATGGGCCATA
1 TGAATGTGATTTGGGCCTAATGGGCCATA
* * *
82834346 CGAATGTGATTTGGGCATAATGGGTCATA
1 TGAATGTGATTTGGGCCTAATGGGCCATA
* *
82834375 TGAATGAGA-TTGGGCCTAGTGGGCCATA
1 TGAATGTGATTTGGGCCTAATGGGCCATA
82834403 T
1 T
82834404 ACATGTATGT
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
28 17 0.34
29 33 0.66
ACGTcount: A:0.25, C:0.13, G:0.32, T:0.30
Consensus pattern (29 bp):
TGAATGTGATTTGGGCCTAATGGGCCATA
Found at i:82842110 original size:28 final size:29
Alignment explanation
Indices: 82842028--82842116 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 29
82842018 AAAGCATGAC
* *
82842028 TATGAATGTGATTTAGGCCTAATGGGCCA
1 TATGAATGAGATTTGGGCCTAATGGGCCA
**
82842057 TACAAATGTA-ATTTGGGCCTAATGGGCCA
1 TATGAATG-AGATTTGGGCCTAATGGGCCA
*
82842086 TATGAATGAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGAGATTTGGGCCTAATGGGCCA
82842114 TAT
1 TAT
82842117 ACTTTGTTTG
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
28 20 0.39
29 31 0.61
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
TATGAATGAGATTTGGGCCTAATGGGCCA
Found at i:82847006 original size:24 final size:24
Alignment explanation
Indices: 82846978--82847023 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
82846968 ACAGAGCATT
82846978 ACCGAACCTTTCAGACATATTACG
1 ACCGAACCTTTCAGACATATTACG
82847002 ACCGAACCTTTCAGACATATTA
1 ACCGAACCTTTCAGACATATTA
82847024 TGAACCTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.26
Consensus pattern (24 bp):
ACCGAACCTTTCAGACATATTACG
Found at i:82848307 original size:22 final size:22
Alignment explanation
Indices: 82848274--82848320 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
82848264 TAATTTATTT
*
82848274 AATTCAATTCAA-ATCACTTTCA
1 AATTCAATTCAATAT-ACATTCA
82848296 AATTCCAA-TCAATATACATTCA
1 AATT-CAATTCAATATACATTCA
82848318 AAT
1 AAT
82848321 ATTCACATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (22 bp):
AATTCAATTCAATATACATTCA
Found at i:82849084 original size:8 final size:8
Alignment explanation
Indices: 82849065--82849137 Score: 77
Period size: 8 Copynumber: 9.6 Consensus size: 8
82849055 TTCTTTTGTT
82849065 ATATATATA
1 ATATA-ATA
82849074 ATATAATA
1 ATATAATA
82849082 ATATAATA
1 ATATAATA
82849090 ATATAATA
1 ATATAATA
82849098 ATATAAT-
1 ATATAATA
*
82849105 ATA-ATGTA
1 ATATA-ATA
82849113 ATAT--TA
1 ATATAATA
82849119 ATATAATA
1 ATATAATA
82849127 A-A-AATA
1 ATATAATA
82849133 ATATA
1 ATATA
82849138 TTATAATAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 15
0.78 0.01 0.21
Matches are distributed among these distances:
6 12 0.21
7 6 0.11
8 33 0.59
9 5 0.09
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:82849122 original size:6 final size:5
Alignment explanation
Indices: 82849064--82849145 Score: 73
Period size: 5 Copynumber: 16.4 Consensus size: 5
82849054 TTTCTTTTGT
82849064 TATATA TATAA TAT-A -ATAA TATAA TA-ATA TAATAA TATAA TATAA
1 TATA-A TATAA TATAA TATAA TATAA TATA-A T-ATAA TATAA TATAA
* * *
82849109 TGTAA TATTAA TATAA TA-AA AATAA TATAT TATAA TA
1 TATAA TA-TAA TATAA TATAA TATAA TATAA TATAA TA
82849146 AAAATCTTAA
Statistics
Matches: 63, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
3 2 0.03
4 6 0.10
5 42 0.67
6 12 0.19
7 1 0.02
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:82853026 original size:13 final size:12
Alignment explanation
Indices: 82853001--82853034 Score: 59
Period size: 13 Copynumber: 2.8 Consensus size: 12
82852991 TTGTTATTTG
82853001 AATCTGAATCTA
1 AATCTGAATCTA
82853013 AATCTGATATCTA
1 AATCTGA-ATCTA
82853026 AATCTGAAT
1 AATCTGAAT
82853035 ATGAAACTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (12 bp):
AATCTGAATCTA
Found at i:82859358 original size:26 final size:26
Alignment explanation
Indices: 82859329--82859386 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
82859319 TGATACAAAT
82859329 TGATAAAAGGTTAGGTAAATGTTCCA
1 TGATAAAAGGTTAGGTAAATGTTCCA
** *
82859355 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAAAGGTTAGGTAAATGTTCCA
82859381 TGATAA
1 TGATAA
82859387 GAATTTCATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.34
Consensus pattern (26 bp):
TGATAAAAGGTTAGGTAAATGTTCCA
Found at i:82867488 original size:25 final size:25
Alignment explanation
Indices: 82867460--82867541 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
82867450 TGCTCATACA
82867460 AGCTGTGAATCGGTATGCTCACTCG
1 AGCTGTGAATCGGTATGCTCACTCG
* *
82867485 AGCTAT-ATATCGGTATGCTCTCAT-G
1 AGCTGTGA-ATCGGTATGCTCAC-TCG
* * * *
82867510 AGCTGTAAATCGATATACTCACACG
1 AGCTGTGAATCGGTATGCTCACTCG
82867535 AGCTGTG
1 AGCTGTG
82867542 GGTCAGAACG
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
24 1 0.02
25 42 0.93
26 2 0.04
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (25 bp):
AGCTGTGAATCGGTATGCTCACTCG
Found at i:82872267 original size:20 final size:18
Alignment explanation
Indices: 82872242--82872285 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
82872232 ATTTTTGTAG
82872242 TTTTAATAATTTTTAAATAT
1 TTTTAATAATTTTT-AAT-T
*
82872262 TTTTAATGATTTTTAATT
1 TTTTAATAATTTTTAATT
82872280 TTTTAA
1 TTTTAA
82872286 AAAATAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
19 3 0.13
20 13 0.57
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTTAATAATTTTTAATT
Found at i:82876652 original size:13 final size:13
Alignment explanation
Indices: 82876634--82876696 Score: 67
Period size: 13 Copynumber: 4.8 Consensus size: 13
82876624 TTAGCTATAA
82876634 TTTTGAAAAGTGC
1 TTTTGAAAAGTGC
*
82876647 TTTTGAAAAATG-
1 TTTTGAAAAGTGC
* *
82876659 TTGTGGAAAAATGC
1 TT-TTGAAAAGTGC
82876673 TTTT-AAGAAGTGC
1 TTTTGAA-AAGTGC
82876686 TTTTGAAAAGT
1 TTTTGAAAAGT
82876697 TTGGTTTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
12 4 0.10
13 34 0.81
14 4 0.10
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (13 bp):
TTTTGAAAAGTGC
Found at i:82879723 original size:95 final size:94
Alignment explanation
Indices: 82879635--82880159 Score: 468
Period size: 95 Copynumber: 5.5 Consensus size: 94
82879625 TCAACAAGCA
* *
82879635 AATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCAAATGA
1 AATTAGAGCAGCGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGA
**
82879700 ACTTAAGTTGTGAACTTAAATCAACGAGC
66 ACTTAAGTTGTGAACTTAAATCAGTGAGC
* * * * * *
82879729 CATTTGAAGCAGCGATATTAAATTAGCTAACTCAGAGAGGATTGTTCATGATATTAAACCAAATG
1 AATTAG-AGCAGCGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATG
* * * * * *
82879794 AACTTAGGCTG-CAATCTTAGATTAGTGAGG
65 AACTTAAGTTGTGAA-CTTAAATCAGTGAGC
** * * *
82879824 ATATTAGAGCAATGATATTAAATCAGCTAACTCAGATAGGATTGTTCATGATAGTAGATCAAATG
1 A-ATTAGAGCAGCGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATG
* * *
82879889 AACTT-AGATTGCGATCTTAAATCAGTGACCC
65 AACTTAAG-TTGTGAACTTAAATCAGTGA-GC
* * * * * * * *
82879920 ATTTGGAGTAGGGATATTAAACCAGCTAACTCAGAGAAGATTTTTCATGATAATAAATCAAATCA
1 AATTAGAGCAGCGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGA
* *
82879985 ACTT-AGCTTG-CAATCCTAAATTC-GTGAGTC
66 ACTTAAG-TTGTGAA-CTTAAA-TCAGTGAG-C
* * * ** *
82880015 ATTTGGAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCATTCATGATAGTAAATCGAATGA
1 AATTAGAGCAGCGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGA
* *
82880080 ACTTAGGTTGTGATA-TTAAATCAGGGAGTC
66 ACTTAAGTTGTGA-ACTTAAATCAGTGAG-C
* * * * * * *
82880110 ATTTGGAGTAGCGGTATTAAATCAGCTACCTTAGAGAATATTGTTCATGA
1 AATTAGAGCAGCGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGA
82880160 CAAATAAACT
Statistics
Matches: 348, Mismatches: 70, Indels: 25
0.79 0.16 0.06
Matches are distributed among these distances:
94 10 0.03
95 327 0.94
96 10 0.03
97 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (94 bp):
AATTAGAGCAGCGATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAAATCAAATGA
ACTTAAGTTGTGAACTTAAATCAGTGAGC
Found at i:82879888 original size:190 final size:189
Alignment explanation
Indices: 82879558--82880159 Score: 672
Period size: 190 Copynumber: 3.2 Consensus size: 189
82879548 GGTGGTCTGG
* * * * * * ***
82879558 AAATCAACTAACTCAAATAGGATTGTTGATGATGATAAACCAAATGAATTTAGGCTATGATCTTA
1 AAATCAGCTAACTCAGAGAAGATTGTTCATGAT-ATAAACCAAATGAACTTAGGCTGCAATCTTA
* *** *
82879623 GATCAACAAGCAAATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAG
65 GATTAGTGAGCATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAG
* * *
82879688 TAAATCAAATGAACTTAAGTTGTGAACTTAAATCAACGAGCCATTTGAAGCAGCGATATT
130 TAAATCAAATGAACTTAAGTTGTGAACTTAAATCAGCGAGCCATTTGGAGTAGCGATATT
* *
82879748 AAATTAGCTAACTCAGAGAGGATTGTTCATGATATTAAACCAAATGAACTTAGGCTGCAATCTTA
1 AAATCAGCTAACTCAGAGAAGATTGTTCATGATA-TAAACCAAATGAACTTAGGCTGCAATCTTA
* * *
82879813 GATTAGTGAGGATATTAGAGCAATGATATTAAATCAGCTAACTCAGATAGGATTGTTCATGATAG
65 GATTAGTGAGCATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAG
* * * * * *
82879878 TAGATCAAATGAACTT-AGATTGCGATCTTAAATCAGTGACCCATTTGGAGTAGGGATATT
130 TAAATCAAATGAACTTAAG-TTGTGAACTTAAATCAGCGAGCCATTTGGAGTAGCGATATT
* * * * *
82879938 AAACCAGCTAACTCAGAGAAGATTTTTCATGATAATAAATCAAATCAACTTA-GCTTGCAATCCT
1 AAATCAGCTAACTCAGAGAAGATTGTTCATGAT-ATAAACCAAATGAACTTAGGC-TGCAATCTT
* * * * * * **
82880002 AAATTCGTGAGTCAT-TTGGAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCATTCATGAT
64 AGATTAGTGAG-CATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGAT
* * * * *
82880066 AGTAAATCGAATGAACTTAGGTTGTGATA-TTAAATCAGGGAGTCATTTGGAGTAGCGGTATT
128 AGTAAATCAAATGAACTTAAGTTGTGA-ACTTAAATCAGCGAGCCATTTGGAGTAGCGATATT
* * *
82880128 AAATCAGCTACCTTAGAGAATATTGTTCATGA
1 AAATCAGCTAACTCAGAGAAGATTGTTCATGA
82880160 CAAATAAACT
Statistics
Matches: 346, Mismatches: 59, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
189 5 0.01
190 337 0.97
191 4 0.01
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.29
Consensus pattern (189 bp):
AAATCAGCTAACTCAGAGAAGATTGTTCATGATATAAACCAAATGAACTTAGGCTGCAATCTTAG
ATTAGTGAGCATATTAGAGCAACGATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGT
AAATCAAATGAACTTAAGTTGTGAACTTAAATCAGCGAGCCATTTGGAGTAGCGATATT
Found at i:82880155 original size:285 final size:285
Alignment explanation
Indices: 82879647--82880159 Score: 629
Period size: 285 Copynumber: 1.8 Consensus size: 285
82879637 TTAGAGCAAC
* * * * *
82879647 GATATTAAATCAGCTAACTCAGATAAGATTGTTCATGATAGTAAATCAAATGAACTTAAGTTGTG
1 GATATTAAACCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTTAAGTTGTC
* * ** **
82879712 AACTTAAATCAACGAGCCATTTGAAGCAGCGATATTAAATTAGCTAACTCAGAGAGGATTGTTCA
66 AACCTAAATCAACGAGCCATTTGAAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCATTCA
* * * * * * *
82879777 TGATATTAAACCAAATGAACTTAGGCTGCAATCTTAGATTAGTGAGGATATTAGAGCAATGATAT
131 TGATAGTAAACCAAATGAACTTAGGCTGCAATATTAAATCAGGGAGCATATTAGAGCAACGATAT
* *
82879842 TAAATCAGCTAACTCAGATAGGATTGTTCATGATAGTAGATCAAATGAACTTAGATTGCGATCTT
196 TAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAGATCAAATGAACTTAGATTGCGATCTT
82879907 AAATCAGTGACCCATTTGGAGTAGG
261 AAATCAGTGACCCATTTGGAGTAGG
*
82879932 GATATTAAACCAGCTAACTCAGAGAAGATTTTTCATGATAATAAATCAAATCAACTT-AGCTTG-
1 GATATTAAACCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTTAAG-TTGT
** * *
82879995 CAATCCTAAATTC-GTGAGTCATTTGGAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCAT
65 CAA-CCTAAA-TCAACGAGCCATTTGAAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCAT
* * * ** * * *
82880059 TCATGATAGTAAATCGAATGAACTTAGGTTGTGATATTAAATCAGGGAGTCAT-TTGGAGTAGCG
128 TCATGATAGTAAACCAAATGAACTTAGGCTGCAATATTAAATCAGGGAG-CATATTAGAGCAACG
* * * *
82880123 GTATTAAATCAGCTACCTTAGAGAATATTGTTCATGA
192 ATATTAAATCAGCTAACTCAGAGAAGATTGTTCATGA
82880160 CAAATAAACT
Statistics
Matches: 187, Mismatches: 37, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
284 4 0.02
285 179 0.96
286 4 0.02
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (285 bp):
GATATTAAACCAGCTAACTCAGAGAAGATTGTTCATGATAATAAATCAAATCAACTTAAGTTGTC
AACCTAAATCAACGAGCCATTTGAAGCAGCGATATTAAATCAGCTAACTCAGAGAAAATCATTCA
TGATAGTAAACCAAATGAACTTAGGCTGCAATATTAAATCAGGGAGCATATTAGAGCAACGATAT
TAAATCAGCTAACTCAGAGAAGATTGTTCATGATAGTAGATCAAATGAACTTAGATTGCGATCTT
AAATCAGTGACCCATTTGGAGTAGG
Found at i:82892636 original size:10 final size:10
Alignment explanation
Indices: 82892621--82892652 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
82892611 TAAATACATT
82892621 TAATTAAAGA
1 TAATTAAAGA
82892631 TAATTAAAGA
1 TAATTAAAGA
82892641 TAATTAAA-A
1 TAATTAAAGA
82892650 TAA
1 TAA
82892653 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:82892678 original size:27 final size:26
Alignment explanation
Indices: 82892648--82892710 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
82892638 AGATAATTAA
82892648 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
82892675 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
82892702 AATATAAAT
1 AATA-AAAT
82892711 AAAAAGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:82892697 original size:15 final size:15
Alignment explanation
Indices: 82892677--82892706 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82892667 ATAATCCTAA
*
82892677 TAATTATCTTAATAT
1 TAATTATCCTAATAT
82892692 TAATTATCCTAATAT
1 TAATTATCCTAATAT
82892707 AAATAAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:82903238 original size:26 final size:25
Alignment explanation
Indices: 82903207--82903267 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
82903197 TCTCGAAGTA
82903207 TTATAAGAAAACATATCT-ATTCTTT
1 TTATAAGAAAACATATCTAATT-TTT
**
82903232 TATATAAGAAAGGATATCTAATTTTT
1 T-TATAAGAAAACATATCTAATTTTT
82903258 TT-TAAGAAAA
1 TTATAAGAAAA
82903268 TCAATATCGT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
24 7 0.23
25 2 0.06
26 19 0.61
27 3 0.10
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.41
Consensus pattern (25 bp):
TTATAAGAAAACATATCTAATTTTT
Found at i:82914479 original size:38 final size:39
Alignment explanation
Indices: 82914419--82914493 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
82914409 AAAAAATAGT
** * *
82914419 AGAGGATTTTTTTCAACAG-AAAATATTTTGCAACAGCC
1 AGAGGATTTTCCTCAACAGAAAAATATTCTACAACAGCC
82914457 AGAGGATTTTCCTCAATC-GAAAAATATTCTACAACAG
1 AGAGGATTTTCCTCAA-CAGAAAAATATTCTACAACAG
82914494 AAAATATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
38 15 0.48
39 16 0.52
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (39 bp):
AGAGGATTTTCCTCAACAGAAAAATATTCTACAACAGCC
Found at i:82919892 original size:14 final size:14
Alignment explanation
Indices: 82919873--82919907 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
82919863 GTTTGCATGT
*
82919873 AAAATGGTTTTCGG
1 AAAATGATTTTCGG
*
82919887 AAAATGATTTTTGG
1 AAAATGATTTTCGG
82919901 AAAATGA
1 AAAATGA
82919908 GTTATTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.34
Consensus pattern (14 bp):
AAAATGATTTTCGG
Found at i:82925639 original size:20 final size:19
Alignment explanation
Indices: 82925585--82925640 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
82925575 CAAAATTATT
**
82925585 ATTTTAGAAAATTTATAAA
1 ATTTTAGAATTTTTATAAA
82925604 ATTTTA-ACATTCTTTATAAA
1 ATTTTAGA-ATT-TTTATAAA
*
82925624 TTTTTTAGAATTTTTAT
1 -ATTTTAGAATTTTTAT
82925641 TTTTTTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
18 1 0.03
19 7 0.23
20 13 0.43
21 8 0.27
22 1 0.03
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (19 bp):
ATTTTAGAATTTTTATAAA
Found at i:82945054 original size:94 final size:94
Alignment explanation
Indices: 82944860--82945060 Score: 219
Period size: 94 Copynumber: 2.1 Consensus size: 94
82944850 CCTACACCCT
** * *
82944860 TGAAGTTGCAGTGGGTCAGGTTTAATCTACCATAGCCAATCTTACCTCTCTGAAGTTGCAATGGA
1 TGAAGTTGCAGTGGGTCAAATTGAAACTACCATAGCCAATCTTACCTCTCTGAAGTTGCAATGGA
*
82944925 GAAGATTGAAGCTACAAATCCTATAGATC
66 GAAGATTAAAGCTACAAATCCTATAGATC
* * ** * * * *
82944954 TAAAGTTGTAGTGGGTCAAATTGAAACTACCATAGCGGATTTTATCT-TCCTGAAGTTGTAGTGG
1 TGAAGTTGCAGTGGGTCAAATTGAAACTACCATAGCCAATCTTACCTCT-CTGAAGTTGCAATGG
* *
82945018 AGTAAGA-TAAAGCTACAAATTCTATA-TTCC
65 AG-AAGATTAAAGCTACAAATCCTATAGAT-C
82945048 TGAAGTTGCAGTG
1 TGAAGTTGCAGTG
82945061 AATCAGATTA
Statistics
Matches: 87, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
93 2 0.02
94 81 0.93
95 4 0.05
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (94 bp):
TGAAGTTGCAGTGGGTCAAATTGAAACTACCATAGCCAATCTTACCTCTCTGAAGTTGCAATGGA
GAAGATTAAAGCTACAAATCCTATAGATC
Found at i:82945073 original size:44 final size:44
Alignment explanation
Indices: 82945000--82945087 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
82944990 GGATTTTATC
* *
82945000 TTCCTGAAGTTGTAGTGGAGTAAGATAAAGCTACAAATT-CTATA
1 TTCCTGAAGTTGCAGTGGAATAAGATAAAGCTAC-AATTCCTATA
*
82945044 TTCCTGAAGTTGCAGT-GAATCAGATTAAAGCTACAATTCCTATA
1 TTCCTGAAGTTGCAGTGGAATAAGA-TAAAGCTACAATTCCTATA
82945088 CCCTTGAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
43 10 0.26
44 29 0.74
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (44 bp):
TTCCTGAAGTTGCAGTGGAATAAGATAAAGCTACAATTCCTATA
Found at i:82945180 original size:94 final size:93
Alignment explanation
Indices: 82945070--82945538 Score: 352
Period size: 94 Copynumber: 5.0 Consensus size: 93
82945060 GAATCAGATT
* * * * *
82945070 AAAGCTACAATTCCTATACCCTTGAAGTTTTAGGGGGTCGGAATAAAATTACAATTGCGAATCTT
1 AAAGCTACAAATCCTATACCCCTGAAGTTGTAGGGAGT-AGAATAAAATTACAATTGCGAATCTT
*
82945135 ATCTCTTTGAAGTTACAGTGGAGCAAGAA
65 ATCTCCTTGAAGTTACAGTGGAGCAAGAA
* * * * * * * * * *
82945164 AAAACTACAAACCCTATATCCTTAAAGTTGTAGTGGAATAGATTGAAACTACAATAGCGAATCTT
1 AAAGCTACAAATCCTATACCCCTGAAGTTGTAG-GGAGTAGAATAAAATTACAATTGCGAATCTT
* * *
82945229 ATCCCCTTGAAGTTGCAGTGGAGCAAGAT
65 ATCTCCTTGAAGTTACAGTGGAGCAAGAA
* * ** *
82945258 AAAGCTACAAGTCCTATACCCCTGAAGTTGCA-ATACGTTAGAATAAAATTACAA-TGTCAAATC
1 AAAGCTACAAATCCTATACCCCTGAAGTTGTAGGGA-G-TAGAATAAAATTACAATTG-CGAATC
* *
82945321 TTATCTCCCTGAAGATACAGTGGAGCAA-AA
63 TTATCTCCTTGAAGTTACAGTGGAGCAAGAA
* * * * ** * ** *
82945351 TGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGG-GTCAGATTGAAGCTATAACAGCGAATT
1 -AAAGCTACAAATCCTATACCCCTGAAGTTGTAG-GGAGT-AGAATAAAATTACAATTGCGAATC
** *
82945415 TTATCTCCTTGAAGTTACAGTGGAATAAGAT
63 TTATCTCCTTGAAGTTACAGTGGAGCAAGAA
* * * * * * * ** * *
82945446 GAAGTTACAAATCCTATACCCCTGAAGTTGTAATGGAATAGATTGAAACTACAACAGCAAACCTT
1 AAAGCTACAAATCCTATACCCCTGAAGTTGT-AGGGAGTAGAATAAAATTACAATTGCGAATCTT
* * *
82945511 ATCTCATTGAAGTTGCAATGGAGCAAGA
65 ATCTCCTTGAAGTTACAGTGGAGCAAGA
82945539 TGAAACTGTG
Statistics
Matches: 295, Mismatches: 68, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
92 1 0.00
93 3 0.01
94 284 0.96
95 7 0.02
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (93 bp):
AAAGCTACAAATCCTATACCCCTGAAGTTGTAGGGAGTAGAATAAAATTACAATTGCGAATCTTA
TCTCCTTGAAGTTACAGTGGAGCAAGAA
Found at i:82945275 original size:188 final size:188
Alignment explanation
Indices: 82945048--82945475 Score: 479
Period size: 188 Copynumber: 2.3 Consensus size: 188
82945038 TCTATATTCC
* * ** * ** *
82945048 TGAAGTTGCAGT-GAATC-AGATTAAAGCTACAATTCCTATACCCTTGAAGTTTTAGGGGGTCGG
1 TGAAGTTGCAGTGGAA-CAAGA-TAAAGCTACAAATCCTATACCCCTGAAGTTGCAAGACGTCAG
* ** *
82945111 AATAAAATTACAAT-TGCGAATCTTATCTCTTTGAAGTTACAGTGGAGCAAGAA-AAAACTACAA
64 AATAAAATTACAATGT-CAAATCTTATCTCCCTGAAGATACAGTGGAGCAA-AATAAAACTACAA
* * * *
82945174 ACCCTATATCCTTAAAGTTGTAGTGGAAT-AGATTGAAACTACAATAGCGAATCTTATCCCCT
127 ACCCTATACCCCTAAAGTTGCAGTGG-ATCAGATTGAAACTACAACAGCGAATCTTATCCCCT
* * * *
82945236 TGAAGTTGCAGTGGAGCAAGATAAAGCTACAAGTCCTATACCCCTGAAGTTGCAATACGTTAGAA
1 TGAAGTTGCAGTGGAACAAGATAAAGCTACAAATCCTATACCCCTGAAGTTGCAAGACGTCAGAA
* * *
82945301 TAAAATTACAATGTCAAATCTTATCTCCCTGAAGATACAGTGGAGCAAAATGAAGCTACAAATCC
66 TAAAATTACAATGTCAAATCTTATCTCCCTGAAGATACAGTGGAGCAAAATAAAACTACAAACCC
* * * * * *
82945366 TATACCCCTGAAGTTGCAGTGGGTCAGATTGAAGCTATAACAGCGAATTTTATCTCCT
131 TATACCCCTAAAGTTGCAGTGGATCAGATTGAAACTACAACAGCGAATCTTATCCCCT
* * * *
82945424 TGAAGTTACAGTGGAATAAGATGAAGTTACAAATCCTATACCCCTGAAGTTG
1 TGAAGTTGCAGTGGAACAAGATAAAGCTACAAATCCTATACCCCTGAAGTTG
82945476 TAATGGAATA
Statistics
Matches: 201, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
187 3 0.01
188 192 0.96
189 6 0.03
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28
Consensus pattern (188 bp):
TGAAGTTGCAGTGGAACAAGATAAAGCTACAAATCCTATACCCCTGAAGTTGCAAGACGTCAGAA
TAAAATTACAATGTCAAATCTTATCTCCCTGAAGATACAGTGGAGCAAAATAAAACTACAAACCC
TATACCCCTAAAGTTGCAGTGGATCAGATTGAAACTACAACAGCGAATCTTATCCCCT
Found at i:82945539 original size:94 final size:93
Alignment explanation
Indices: 82945129--82945542 Score: 425
Period size: 94 Copynumber: 4.4 Consensus size: 93
82945119 TACAATTGCG
* ** * * * * *
82945129 AATCTTATCTCTTTGAAGTTACAGTGGAGCAAGAAAAAACTACAAACCCTATATCCTTAAAGTTG
1 AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
* * * *
82945194 TAGTGGAATAGATTGAAACTACAATAGCG
66 CAATGG-ATAGATTGAAACTACAACAGCA
* * * *
82945223 AATCTTATCCCCTTGAAGTTGCAGTGGAGCAAGATAAAGCTACAAGTCCTATACCCCTGAAGTTG
1 AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
* * * * * *
82945288 CAATACGTTAGAATAAAATTACAA-TGTCA
66 CAAT-GGATAGATTGAAACTACAACAG-CA
* * *
82945317 AATCTTATCTCCCTGAAGATACAGTGGAGCAAAATGAAGCTACAAATCCTATACCCCTGAAGTTG
1 AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
* * * * *
82945382 CAGTGGGTCAGATTGAAGCTATAACAGCG
66 CAATGGAT-AGATTGAAACTACAACAGCA
* ** *
82945411 AATTTTATCTCCTTGAAGTTACAGTGGAATAAGATGAAGTTACAAATCCTATACCCCTGAAGTTG
1 AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
*
82945476 TAATGGAATAGATTGAAACTACAACAGCA
66 CAATGG-ATAGATTGAAACTACAACAGCA
* * * *
82945505 AACCTTATCTCATTGAAGTTGCAATGGAGCAAGATGAA
1 AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAA
82945543 ACTGTGACAC
Statistics
Matches: 259, Mismatches: 56, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
93 3 0.01
94 253 0.98
95 3 0.01
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (93 bp):
AATCTTATCTCCTTGAAGTTACAGTGGAGCAAGATGAAGCTACAAATCCTATACCCCTGAAGTTG
CAATGGATAGATTGAAACTACAACAGCA
Found at i:82946881 original size:15 final size:15
Alignment explanation
Indices: 82946863--82946893 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
82946853 TAATTTCGTC
82946863 CTATTTCATTTTTAT
1 CTATTTCATTTTTAT
*
82946878 CTATTTTATTTTTAT
1 CTATTTCATTTTTAT
82946893 C
1 C
82946894 CCTTTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.13, G:0.00, T:0.68
Consensus pattern (15 bp):
CTATTTCATTTTTAT
Found at i:82946899 original size:15 final size:15
Alignment explanation
Indices: 82946865--82946903 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
82946855 ATTTCGTCCT
* *
82946865 ATTTCATTTTTATCT
1 ATTTTATTTTTATCC
82946880 ATTTTATTTTTATCC
1 ATTTTATTTTTATCC
*
82946895 CTTTTATTT
1 ATTTTATTT
82946904 CATTTTCGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.18, C:0.13, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTATTTTTATCC
Found at i:82947518 original size:19 final size:17
Alignment explanation
Indices: 82947476--82947521 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 17
82947466 TATTATTATT
82947476 TCTTATTATTGTATTCA
1 TCTTATTATTGTATTCA
*
82947493 TCATATTATTGTCATTTCA
1 TCTTATTATTGT-A-TTCA
*
82947512 TTTTATTATT
1 TCTTATTATT
82947522 TATGTTGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 11 0.46
18 1 0.04
19 12 0.50
ACGTcount: A:0.24, C:0.11, G:0.04, T:0.61
Consensus pattern (17 bp):
TCTTATTATTGTATTCA
Found at i:82951345 original size:12 final size:12
Alignment explanation
Indices: 82951328--82951352 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82951318 AACAACATAT
82951328 ATATATATATAC
1 ATATATATATAC
82951340 ATATATATATAC
1 ATATATATATAC
82951352 A
1 A
82951353 CAATGAAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
ATATATATATAC
Found at i:82951762 original size:26 final size:27
Alignment explanation
Indices: 82951723--82951779 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
82951713 ATTATTCAAA
*
82951723 ATAATAATTAATTTAT-ATAATTAATAT
1 ATAAAAATTAATTT-TGATAATTAATAT
*
82951750 ATAAAAATT-ATTTTGATAATTCATAT
1 ATAAAAATTAATTTTGATAATTAATAT
82951776 ATAA
1 ATAA
82951780 TACTAATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 1 0.04
26 18 0.67
27 8 0.30
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (27 bp):
ATAAAAATTAATTTTGATAATTAATAT
Found at i:82954532 original size:40 final size:40
Alignment explanation
Indices: 82954463--82954687 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
82954453 AAACCAAGTA
* * *
82954463 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
82954502 CCTTCGGGACTTAACCCGGATATAGTAACTCACACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
82954542 CCTTCGGGTCTTAGCCTGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82954582 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TA--ACTCGCACAAATG
*
82954625 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
82954665 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
82954688 CATCCGAATA
Statistics
Matches: 158, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
39 12 0.08
40 109 0.69
42 1 0.01
43 36 0.23
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82954664 original size:83 final size:80
Alignment explanation
Indices: 82954463--82954687 Score: 290
Period size: 83 Copynumber: 2.8 Consensus size: 80
82954453 AAACCAAGTA
* * * * *
82954463 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* *
82954527 TAACTCACACACATG
66 AAACTCACACAAATG
* * * * *
82954542 CCTTCGGGTCTTAGCCTGGAAATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
82954607 CAACTACTCGCACAAATG
66 -AA--ACTCACACAAATG
*
82954625 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
82954688 CATCCGAATA
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 12 0.10
80 42 0.34
81 1 0.01
83 68 0.55
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
AAACTCACACAAATG
Found at i:82961788 original size:24 final size:23
Alignment explanation
Indices: 82961744--82961800 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 23
82961734 TTTTACTTAT
* *
82961744 TTTCTTATTACTTAGTTATTTACG
1 TTTCTTATTACTCAGTAATTT-CG
82961768 TTTCTTATTCACTCA-TAATTTCG
1 TTTCTTATT-ACTCAGTAATTTCG
*
82961791 -TTATTATTAC
1 TTTCTTATTAC
82961801 GTATAAGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 2 0.07
22 7 0.24
23 2 0.07
24 14 0.48
25 4 0.14
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.56
Consensus pattern (23 bp):
TTTCTTATTACTCAGTAATTTCG
Found at i:82963209 original size:17 final size:18
Alignment explanation
Indices: 82963178--82963211 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
82963168 AATTTAACTT
82963178 TAATTAAATTATTTAAAA
1 TAATTAAATTATTTAAAA
*
82963196 TAATT-AATTTTTTAAA
1 TAATTAAATTATTTAAA
82963212 TTATAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATTAAATTATTTAAAA
Found at i:82963504 original size:21 final size:20
Alignment explanation
Indices: 82963480--82963537 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 20
82963470 AGGATTTAAT
*
82963480 GTTTAGGGTTCATGGTTATGG
1 GTTTAGGGTTCATGGTTAT-A
82963501 GTTTAGGGTTACAT-GTTATA
1 GTTTAGGGTT-CATGGTTATA
* *
82963521 GTTTAGTGTTCAGGGTT
1 GTTTAGGGTTCATGGTT
82963538 TAAAGATTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
19 2 0.06
20 12 0.38
21 15 0.47
22 3 0.09
ACGTcount: A:0.17, C:0.05, G:0.33, T:0.45
Consensus pattern (20 bp):
GTTTAGGGTTCATGGTTATA
Found at i:82964395 original size:19 final size:19
Alignment explanation
Indices: 82964350--82964396 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
82964340 ATCAAATTAA
*
82964350 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
82964369 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
82964388 AATAAAAAT
1 AATAAAAAT
82964397 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:82965873 original size:5 final size:5
Alignment explanation
Indices: 82965865--82965894 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
82965855 TTTTTATTAG
*
82965865 TTAAA TTAAA TTAAA TTAAA TTAAT TTAAA
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA
82965895 ATTGCCACGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TTAAA
Found at i:82968528 original size:14 final size:14
Alignment explanation
Indices: 82968509--82968538 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
82968499 AAATCAAAGG
82968509 GATGGAGATTTAGA
1 GATGGAGATTTAGA
82968523 GATGGAGATTTAGA
1 GATGGAGATTTAGA
82968537 GA
1 GA
82968539 AGCAAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.37, T:0.27
Consensus pattern (14 bp):
GATGGAGATTTAGA
Found at i:82968690 original size:14 final size:14
Alignment explanation
Indices: 82968664--82968697 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
82968654 TGGGGATACC
82968664 GATTTTA-GGGGAA
1 GATTTTAGGGGGAA
82968677 GATTTTAGGGGGAA
1 GATTTTAGGGGGAA
82968691 -ATTTTAG
1 GATTTTAG
82968698 ACGTTCCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35
Consensus pattern (14 bp):
GATTTTAGGGGGAA
Found at i:82970111 original size:21 final size:22
Alignment explanation
Indices: 82970075--82970115 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
82970065 TGTTTTTTGG
82970075 AGTTTAGGGTTTTAGGGGTTAT
1 AGTTTAGGGTTTTAGGGGTTAT
*
82970097 AGTTTAGTG-TTTAGGGGTT
1 AGTTTAGGGTTTTAGGGGTT
82970116 TTTAGACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (22 bp):
AGTTTAGGGTTTTAGGGGTTAT
Found at i:82970308 original size:40 final size:41
Alignment explanation
Indices: 82970202--82970400 Score: 226
Period size: 41 Copynumber: 4.9 Consensus size: 41
82970192 ATTATATGAC
* *
82970202 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
82970243 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
82970284 TTTTAGCTG-GTTTTACCAAAAGCGCCGCTAATGCTCT-GT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *** * * *
82970323 TTTTAGCAGCATTTTTTGTTAAAA-CGCCACTATTGTTCT-GT
1 TTTTAGCGGC--GTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
82970364 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
82970401 CGTGTTTTAT
Statistics
Matches: 134, Mismatches: 20, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 18 0.13
40 39 0.29
41 69 0.51
42 8 0.06
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.37
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:82970308 original size:81 final size:81
Alignment explanation
Indices: 82970202--82970409 Score: 242
Period size: 81 Copynumber: 2.6 Consensus size: 81
82970192 ATTATATGAC
* * *
82970202 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGC-GTTTTT-CCAAAA
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GTTTTTAGCAGCAGTTTTTGCCAAAA
*
82970265 GCGCCGCTAATGCTCTGGT
65 -CGCCACTAATGCTCT-GT
* * **
82970284 TTTTAGCTG-GTTTTACCAAAAGCGCCGCTAATGCTCTGTTTTTAGCAGCATTTTTTGTTAAAAC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTTTTTAGCAGCAGTTTTTGCCAAAAC
* *
82970348 GCCACTATTGTTCTGT
66 GCCACTAATGCTCTGT
* * *
82970364 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCCGTGTTTTA
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT-TTTTA
82970410 TAATTTTTAC
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
80 21 0.19
81 70 0.65
82 17 0.16
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (81 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTTTTTAGCAGCAGTTTTTGCCAAAAC
GCCACTAATGCTCTGT
Found at i:82970728 original size:24 final size:26
Alignment explanation
Indices: 82970674--82970742 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 26
82970664 ATTGTTATCG
* * * *
82970674 TATAAAAGTAAAATGAATTATTACAT
1 TATAAAATTAAAATCATTTATAACAT
82970700 T-TAAAATTAAAAT-ATTTATAAC-T
1 TATAAAATTAAAATCATTTATAACAT
82970723 TATAAAATTCAAAATCATTT
1 TATAAAATT-AAAATCATTT
82970743 GAATCCATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
23 2 0.05
24 14 0.38
25 16 0.43
26 5 0.14
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (26 bp):
TATAAAATTAAAATCATTTATAACAT
Found at i:82971674 original size:15 final size:15
Alignment explanation
Indices: 82971656--82971687 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
82971646 AAAGAGCTCG
82971656 AAAAATATGAGTCTA
1 AAAAATATGAGTCTA
*
82971671 AAAAATTTGAGTCTA
1 AAAAATATGAGTCTA
82971686 AA
1 AA
82971688 GTAAGTCCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.28
Consensus pattern (15 bp):
AAAAATATGAGTCTA
Found at i:82983709 original size:17 final size:17
Alignment explanation
Indices: 82983687--82983736 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
82983677 AATTAAGCCG
82983687 TGTGGGCCACACAGGCA
1 TGTGGGCCACACAGGCA
**
82983704 TGTGGGCCACATGGGCA
1 TGTGGGCCACACAGGCA
82983721 TGTGGGCCCACACAGG
1 TGTGGG-CCACACAGG
82983737 TGAACCATAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 21 0.75
18 7 0.25
ACGTcount: A:0.20, C:0.28, G:0.38, T:0.14
Consensus pattern (17 bp):
TGTGGGCCACACAGGCA
Found at i:82985380 original size:40 final size:40
Alignment explanation
Indices: 82985287--82985504 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
82985277 AAGCCAAGTA
* * *
82985287 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
82985325 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
82985365 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82985405 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
82985445 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
82985486 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
82985505 TTATCATCCA
Statistics
Matches: 159, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 102 0.64
41 24 0.15
42 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82993940 original size:18 final size:17
Alignment explanation
Indices: 82993907--82993940 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
82993897 AATTGAGCCG
*
82993907 TGTGGGCCACAGGGGTA
1 TGTGGGCCACACGGGTA
82993924 TGTGGGCCCACACGGGT
1 TGTGGG-CCACACGGGT
82993941 GAACCATACG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.15, C:0.24, G:0.44, T:0.18
Consensus pattern (17 bp):
TGTGGGCCACACGGGTA
Found at i:82997845 original size:27 final size:29
Alignment explanation
Indices: 82997783--82997845 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 29
82997773 AAATAGAGGT
*
82997783 TGAGATTTAAGTTGTAGATGAATTATATA
1 TGAGGTTTAAGTTGTAGATGAATTATATA
*
82997812 TGTGGTTTAAG-TGTA-ATGAATTATA-A
1 TGAGGTTTAAGTTGTAGATGAATTATATA
82997838 TGAAGGTT
1 TG-AGGTT
82997846 ATCTAGCAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 3 0.10
27 14 0.47
28 4 0.13
29 9 0.30
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (29 bp):
TGAGGTTTAAGTTGTAGATGAATTATATA
Found at i:82999673 original size:24 final size:23
Alignment explanation
Indices: 82999629--82999673 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
82999619 TTTTCTAAAA
**
82999629 AATATAATAATAAATTTAATATT
1 AATATAATAATAAATAAAATATT
*
82999652 AATATTAATATTAAATAAAATA
1 AATA-TAATAATAAATAAAATA
82999674 AAAATCTCTC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 4 0.22
24 14 0.78
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
AATATAATAATAAATAAAATATT
Found at i:83001624 original size:22 final size:23
Alignment explanation
Indices: 83001579--83001627 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
83001569 GAATTATAAA
83001579 ATATATAAAATATGTACATATAT
1 ATATATAAAATATGTACATATAT
* * *
83001602 ATATGTAAAA-ATGTATATTTAT
1 ATATATAAAATATGTACATATAT
83001624 ATAT
1 ATAT
83001628 TTATAAAGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (23 bp):
ATATATAAAATATGTACATATAT
Found at i:83003518 original size:41 final size:42
Alignment explanation
Indices: 83003468--83003905 Score: 203
Period size: 44 Copynumber: 10.3 Consensus size: 42
83003458 CACTACAATA
* **
83003468 TCAGGGAGATAAGA-CCTGATGCGATCTACTCTGCTGTAACC
1 TCAGGGAGATAAGATCCTGATGCGATCTGCTCCACTGTAACC
* * *** * *
83003509 TCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACT
1 TCAGGGAGATAAGATCC-TGA-TGCGATCTGCTCCACTGTAACC
* ** * * * *
83003553 TCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATC
1 TCAGGGAGATAAGATCCTG-ATGCGATCTGCTCCACTGTAACC
* * * *
83003596 TCAGGGAGATAAGA-CCTGATGTGATCTTCTCTACTGTAACT
1 TCAGGGAGATAAGATCCTGATGCGATCTGCTCCACTGTAACC
* ** * *
83003637 TCAGAGAGATAAGATCCT--T-TAAT-TCGCTCCATTGTAATC
1 TCAGGGAGATAAGATCCTGATGCGATCT-GCTCCACTGTAACC
* * * * *
83003676 TCAAGGAGATAGGATTACT-AT-CTTTGATCTGCTCCGCTGTAATC
1 TCAGGGAGATAAGA-TCCTGATGC---GATCTGCTCCACTGTAACC
* * *
83003720 TCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACC
1 TCAGGGAGATAAGATC-CT-GATGCGATCTGCTCCACTGTAACC
* * * *
83003764 TCAGGGAGATAAGAT-CTGAAATTCTTCGGTCTACTCCAATGTAACC
1 TCAGGGAGATAAGATCCTG--A---TGCGATCTGCTCCACTGTAACC
* * ** *
83003810 TCAGGGTGATAAGA-CCTGATGCGATCTACTCTGCTGTAACT
1 TCAGGGAGATAAGATCCTGATGCGATCTGCTCCACTGTAACC
* * *** * *
83003851 TCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC
1 TCAGGGAGATAAGATCC-TGA-TGCGATCTGCTCCACTGTAACC
83003895 TCAGGGAGATA
1 TCAGGGAGATA
83003906 GGATTACTAG
Statistics
Matches: 292, Mismatches: 80, Indels: 47
0.70 0.19 0.11
Matches are distributed among these distances:
38 1 0.00
39 23 0.08
40 4 0.01
41 71 0.24
42 11 0.04
43 35 0.12
44 110 0.38
45 1 0.00
46 35 0.12
47 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (42 bp):
TCAGGGAGATAAGATCCTGATGCGATCTGCTCCACTGTAACC
Found at i:83003921 original size:175 final size:173
Alignment explanation
Indices: 83003450--83004004 Score: 568
Period size: 175 Copynumber: 3.2 Consensus size: 173
83003440 TTAGGTTTAA
** ** *
83003450 GTCTACTCCACTACAATATCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAG
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAG
* *
83003515 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA-CTTCAGGGAGATAGGA-TAGTGTCTTCG
66 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATC-TCAGGGAGATAGGATTACTG-CTTCA
* *
83003578 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTG--A-T-GTG
129 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTG
* * * * * * *
83003619 ATCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATTCG--CT-C-CAT--TGTAA-TCT
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGA-CC--TGATGCGATCTACTC-TGCTGTAACT-T
* * * * * *
83003677 CA-AGGAGATAGGAT--TACTATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-C
61 CAGA-GAGATAAGATCCT-TTAT-TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TAC
* *
83003738 TGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCG
122 T-GCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTT-G
* *
83003792 GTCTACTCCAATGTAACCTCAGGGTGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAG
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAG
83003857 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAA
66 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACT-GCTTCAA
* *
83003922 TCTACTCCGTTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTG
130 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTC-TTG
** *
83003967 GTCTGTTCCACTGTAATCTCAGGGAGATAAGACTCTGA
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGAC-CTGA
83004005 ATAAGCCTAA
Statistics
Matches: 308, Mismatches: 48, Indels: 53
0.75 0.12 0.13
Matches are distributed among these distances:
165 1 0.00
166 4 0.01
167 47 0.15
168 40 0.13
169 28 0.09
170 10 0.03
171 1 0.00
172 10 0.03
173 28 0.09
174 2 0.01
175 125 0.41
176 11 0.04
177 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (173 bp):
GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAG
AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTGCTTCAAT
CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTG
Found at i:83003948 original size:219 final size:211
Alignment explanation
Indices: 83003491--83003955 Score: 574
Period size: 219 Copynumber: 2.2 Consensus size: 211
83003481 ACCTGATGCG
* * * *** * *
83003491 ATCTACTCTGCTGTAACCTCAGAGAGATAAGATC-CTTTATTTTAATCCGCTCCACTGTAACTTC
1 ATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTC-TGGCTTCAATCCGCTCCACTGTAACCTC
* * * ** * *
83003555 AGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATGTGA
65 AGGGAGATAAGATAATGTCTTCGATCTACTCCAATGTAACCTCAGGGAGATAAGACCTGATGCGA
* * *
83003620 TCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATTCGCTCCATTGTAATCTCAAGGAGA
130 TCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATCTCAAGGAGA
* **
83003685 TAGGATTACTATCTTTG
195 TAGGATTACTAGCTTCA
* *
83003702 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCA
1 ATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCCGCTCCACTGTAACCTCA
* *
83003767 GGGAGATAAGATCTGAAAT-TCTTCGGTCTACTCCAATGTAACCTCAGGGTGATAAGACCTGATG
66 GGGAGATAAGA--T--AATGTCTTCGATCTACTCCAATGTAACCTCAGGGAGATAAGACCTGATG
*
83003831 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCT
127 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCC-----TTTAATCCGCTCCACTGTAATCT
*
83003896 CAGGGAGATAGGATTACTAGCTTCA
187 CAAGGAGATAGGATTACTAGCTTCA
*
83003921 ATCTACTCCGTTGTAATCTCAGGGAGATAAGATCT
1 ATCTACTCCGCTGTAATCTCAGGGAGATAAGATCT
83003956 GAAATTCTTT
Statistics
Matches: 215, Mismatches: 29, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
211 63 0.29
212 1 0.00
213 1 0.00
214 73 0.34
215 2 0.01
219 75 0.35
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (211 bp):
ATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCCGCTCCACTGTAACCTCA
GGGAGATAAGATAATGTCTTCGATCTACTCCAATGTAACCTCAGGGAGATAAGACCTGATGCGAT
CTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATCTCAAGGAGAT
AGGATTACTAGCTTCA
Found at i:83016656 original size:22 final size:23
Alignment explanation
Indices: 83016611--83016664 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 23
83016601 GAATTATAAA
83016611 ATATATAAAATATGTACATATAT
1 ATATATAAAATATGTACATATAT
* * *
83016634 ATATGTAAAA-ATGTATATTTAT
1 ATATATAAAATATGTACATATAT
*
83016656 ATTTATAAA
1 ATATATAAA
83016665 GGTTAGAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 17 0.65
23 9 0.35
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.43
Consensus pattern (23 bp):
ATATATAAAATATGTACATATAT
Found at i:83016779 original size:22 final size:22
Alignment explanation
Indices: 83016754--83016795 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
83016744 ATATATACAA
* * *
83016754 AAAAATGTGTATAAGTATATGT
1 AAAAATATGTAAAAATATATGT
83016776 AAAAATATGTAAAAATATAT
1 AAAAATATGTAAAAATATAT
83016796 AATAATATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (22 bp):
AAAAATATGTAAAAATATATGT
Found at i:83016785 original size:10 final size:10
Alignment explanation
Indices: 83016770--83016808 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
83016760 GTGTATAAGT
83016770 ATATGTAAAA
1 ATATGTAAAA
83016780 ATATGTAAAA
1 ATATGTAAAA
*
83016790 ATATATAATAA
1 ATATGTAA-AA
83016801 TATATGTA
1 -ATATGTA
83016809 TATATCTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 17 0.68
11 2 0.08
12 6 0.24
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (10 bp):
ATATGTAAAA
Found at i:83019081 original size:28 final size:29
Alignment explanation
Indices: 83019022--83019082 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
83019012 CATGTTTTTA
*
83019022 TTTAAATTTTTATAAAAAACATTTGAATT
1 TTTAAATTTTTATAAAAAAAATTTGAATT
83019051 TTTAAATTTTT-TAAATAAAAA-TTGTAATT
1 TTTAAATTTTTATAAA-AAAAATTTG-AATT
83019080 TTT
1 TTT
83019083 TATAAAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 7 0.24
29 22 0.76
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (29 bp):
TTTAAATTTTTATAAAAAAAATTTGAATT
Found at i:83019090 original size:20 final size:22
Alignment explanation
Indices: 83019055--83019106 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 22
83019045 TGAATTTTTA
* *
83019055 AATTTTTTAAATAAAAATTGT-
1 AATTTTTTATATAAAAATTATG
83019076 AATTTTTTATA-AAAAATTATG
1 AATTTTTTATATAAAAATTATG
83019097 AATTTTTTAT
1 AATTTTTTAT
83019107 TTTTATGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 8 0.29
21 20 0.71
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (22 bp):
AATTTTTTATATAAAAATTATG
Found at i:83019140 original size:29 final size:27
Alignment explanation
Indices: 83019079--83019141 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
83019069 AAATTGTAAT
*
83019079 TTTTTATAAAAAATTATGAATTTTTTA
1 TTTTTATAAAAAATTATAAATTTTTTA
* *
83019106 TTTTTATGAAATATTATAAAATTTTTATA
1 TTTTTATAAAAAATTAT-AAATTTTT-TA
83019135 TTTTTAT
1 TTTTTAT
83019142 TATATACTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 15 0.48
28 7 0.23
29 9 0.29
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (27 bp):
TTTTTATAAAAAATTATAAATTTTTTA
Found at i:83019549 original size:15 final size:15
Alignment explanation
Indices: 83019531--83019569 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
83019521 TAACCTTATT
83019531 ATTTTTTAATTTAAA
1 ATTTTTTAATTTAAA
*
83019546 ATTTTTATAATTTTAA
1 ATTTTT-TAATTTAAA
*
83019562 TTTTTTTA
1 ATTTTTTA
83019570 GATCTTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
ATTTTTTAATTTAAA
Found at i:83024875 original size:18 final size:18
Alignment explanation
Indices: 83024848--83024891 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
83024838 TACATCCAAT
83024848 ACAA-CCAATTAAACCCA
1 ACAACCCAATTAAACCCA
* *
83024865 ATAACCCAATTTAACCCA
1 ACAACCCAATTAAACCCA
83024883 ACAACCCAA
1 ACAACCCAA
83024892 GCTACCCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.50, C:0.36, G:0.00, T:0.14
Consensus pattern (18 bp):
ACAACCCAATTAAACCCA
Found at i:83025325 original size:10 final size:9
Alignment explanation
Indices: 83025310--83025349 Score: 53
Period size: 10 Copynumber: 4.1 Consensus size: 9
83025300 ACCTATATAT
83025310 ATATAAAAA
1 ATATAAAAA
83025319 CATATAAAAA
1 -ATATAAAAA
83025329 TATAATAAAAA
1 -AT-ATAAAAA
83025340 ATATAAAAA
1 ATATAAAAA
83025349 A
1 A
83025350 GGGGAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
9 8 0.29
10 13 0.46
11 7 0.25
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.23
Consensus pattern (9 bp):
ATATAAAAA
Found at i:83026378 original size:26 final size:23
Alignment explanation
Indices: 83026328--83026375 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
83026318 TTATTATTAT
*
83026328 TTCTAATATATATTATGTAAATA
1 TTCTAATATATATTATATAAATA
*
83026351 TTCTAATACTATATTATATATATA
1 TTCTAATA-TATATTATATAAATA
83026375 T
1 T
83026376 ATTTTTCGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (23 bp):
TTCTAATATATATTATATAAATA
Found at i:83026685 original size:21 final size:22
Alignment explanation
Indices: 83026655--83026725 Score: 60
Period size: 23 Copynumber: 3.3 Consensus size: 22
83026645 TATATTATCC
83026655 ATGTTATTATTAATATTA-GTAT
1 ATGTT-TTATTAATATTAGGTAT
*
83026677 ATGTTTTATT-AT-TTATGTAT
1 ATGTTTTATTAATATTAGGTAT
* *
83026697 ATATCTTTAATACATA-TAGGTAT
1 ATGT-TTTATTA-ATATTAGGTAT
83026720 ATGTTT
1 ATGTTT
83026726 ATGTAATGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
19 3 0.08
20 9 0.22
21 10 0.25
22 7 0.17
23 11 0.28
ACGTcount: A:0.32, C:0.03, G:0.10, T:0.55
Consensus pattern (22 bp):
ATGTTTTATTAATATTAGGTAT
Found at i:83028298 original size:34 final size:34
Alignment explanation
Indices: 83028255--83028323 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
83028245 ATGATAATTA
83028255 TGTGTTGTTTTGTCTTCTCTTCTACTTTTTATTT
1 TGTGTTGTTTTGTCTTCTCTTCTACTTTTTATTT
83028289 TGTGTTGTTTTGTCTTCTCTTCTACTTTTTATTT
1 TGTGTTGTTTTGTCTTCTCTTCTACTTTTTATTT
83028323 T
1 T
83028324 TTAAATATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.06, C:0.14, G:0.12, T:0.68
Consensus pattern (34 bp):
TGTGTTGTTTTGTCTTCTCTTCTACTTTTTATTT
Found at i:83034694 original size:30 final size:30
Alignment explanation
Indices: 83034658--83034717 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
83034648 TAAATAAATA
83034658 AATAACAAATAACAAAAGACTATCATCTTC
1 AATAACAAATAACAAAAGACTATCATCTTC
83034688 AATAACAAATAACAAAAGACTATCATCTTC
1 AATAACAAATAACAAAAGACTATCATCTTC
83034718 TTTCTTTTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.53, C:0.20, G:0.03, T:0.23
Consensus pattern (30 bp):
AATAACAAATAACAAAAGACTATCATCTTC
Found at i:83042161 original size:46 final size:46
Alignment explanation
Indices: 83041980--83042200 Score: 184
Period size: 46 Copynumber: 4.8 Consensus size: 46
83041970 TCATTTGTGC
* * * *
83041980 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCA-CATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGA-GATGAGA
* ** * *
83042026 GCCAGTACAAGACCATGTCTGGGACATGGCAACGGC-ATTGAGAAGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-TGAGATGAGA
* * * *
83042074 GCTAGTGTAAGATATGTATGGGATATGCATCGGCCT-CGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTATGAGATG-AGA
* *
83042120 ACTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTG-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGAGA
*
83042165 TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCT
83042201 TCAATTTCGA
Statistics
Matches: 140, Mismatches: 24, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
44 9 0.06
45 17 0.12
46 65 0.46
47 28 0.20
48 20 0.14
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGAGA
Found at i:83042287 original size:47 final size:46
Alignment explanation
Indices: 83042123--83042294 Score: 190
Period size: 49 Copynumber: 3.7 Consensus size: 46
83042113 GATGTAAACT
*
83042123 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TATGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTATG-GATGAGTC
*
83042167 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCAATTTCGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTT--A--TGGATGAGTC
* * ** *
83042216 ACTGTAAGACCATGTCTAGGACATGGCATCAACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTT-ATGGATGAGTC
*
83042263 AGTGTAAGACCATGTCTGGAACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
83042295 TATTACACCC
Statistics
Matches: 106, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
44 9 0.08
45 14 0.13
46 12 0.11
47 31 0.29
48 1 0.01
49 35 0.33
50 3 0.03
51 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTATGGATGAGTC
Found at i:83052846 original size:12 final size:12
Alignment explanation
Indices: 83052829--83052858 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
83052819 TCAGTGAGTT
83052829 ACACGGCCTAGC
1 ACACGGCCTAGC
83052841 ACACGGCCTAGC
1 ACACGGCCTAGC
83052853 ACACGG
1 ACACGG
83052859 GCGTATAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.40, G:0.27, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:83056531 original size:24 final size:24
Alignment explanation
Indices: 83056480--83056532 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
83056470 TGTAATAAGA
** *
83056480 TATATATATATGTGTATGTGTGTG
1 TATATATATATGACTATGTATGTG
83056504 TATATATATATGACT-TGTATGTG
1 TATATATATATGACTATGTATGTG
83056527 T-TATAT
1 TATATAT
83056533 GAGCATGTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 5 0.19
23 8 0.31
24 13 0.50
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.51
Consensus pattern (24 bp):
TATATATATATGACTATGTATGTG
Done.