Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 255 of 325
Found at i:83060058 original size:18 final size:18
Alignment explanation
Indices: 83060032--83060067 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
83060022 AGGCCACATA
*
83060032 CAGATGTGGTTATCGTGG
1 CAGAGGTGGTTATCGTGG
83060050 CAGAGGTGGTTATCGTGG
1 CAGAGGTGGTTATCGTGG
83060068 TAAAGGAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.11, G:0.42, T:0.31
Consensus pattern (18 bp):
CAGAGGTGGTTATCGTGG
Found at i:83068868 original size:12 final size:13
Alignment explanation
Indices: 83068851--83068883 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
83068841 CTTACCTAAT
*
83068851 TAAAATTTT-ATA
1 TAAAATTTTCACA
83068863 TAAAATTTTCACA
1 TAAAATTTTCACA
83068876 TAAAATTT
1 TAAAATTT
83068884 ATTTTCCACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (13 bp):
TAAAATTTTCACA
Found at i:83080358 original size:4 final size:4
Alignment explanation
Indices: 83080349--83080375 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
83080339 TTATAGTTGT
83080349 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
83080376 GATATTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:83081264 original size:77 final size:76
Alignment explanation
Indices: 83081004--83081272 Score: 237
Period size: 77 Copynumber: 3.6 Consensus size: 76
83080994 TTTCTTAACG
* * * *
83081004 GTTACTTAAAACTTTAAAAT-A-TCTTTAAAAAATTAAGTAATTCCTAAATTAATGGAAAATTAT
1 GTTACTTAAAACCTT--AATCAGTCTTTAAAAAATTAAGTAATTCCTAAACT-ATGGGAAATTAC
*
83081067 TTAAATTT-TTTAAC
63 TT-AATTTCTTTAAT
* * ** * * * * *
83081081 ATTACTTAAAA-CTTTATTTGTTCTTTAAGAAATTAAGCAAATCCTAAACAATGGG--A-TAGTT
1 GTTACTTAAAACCTTAATCAG-TCTTTAAAAAATTAAGTAATTCCTAAACTATGGGAAATTACTT
*
83081142 AATTTCTTTTAT
65 AATTTCTTTAAT
* * ** *
83081154 GCTACTTAAAACCTTAACCAACCTTTAAGAAATTAAGTAATTCCTAAACTATGGGAAAGTTACTT
1 GTTACTTAAAACCTTAATCAGTCTTTAAAAAATTAAGTAATTCCTAAACTATGGGAAA-TTACTT
*
83081219 AATTTCTTTGAT
65 AATTTCTTTAAT
*
83081231 GTTACTTAAAACCTTAATCAGTCTTTAAAAAATTTAGTAATT
1 GTTACTTAAAACCTTAATCAGTCTTTAAAAAATTAAGTAATT
83081273 TACTTACTTT
Statistics
Matches: 151, Mismatches: 32, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
72 5 0.03
73 47 0.31
74 7 0.05
75 1 0.01
76 6 0.04
77 85 0.56
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (76 bp):
GTTACTTAAAACCTTAATCAGTCTTTAAAAAATTAAGTAATTCCTAAACTATGGGAAATTACTTA
ATTTCTTTAAT
Found at i:83085878 original size:17 final size:18
Alignment explanation
Indices: 83085856--83085889 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
83085846 ATATGTACAT
83085856 TTTAAA-ATGAATAATAG
1 TTTAAATATGAATAATAG
*
83085873 TTTAAATATGTATAATA
1 TTTAAATATGAATAATA
83085890 TGTGAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (18 bp):
TTTAAATATGAATAATAG
Found at i:83086823 original size:17 final size:16
Alignment explanation
Indices: 83086803--83086855 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 16
83086793 AAAGATTTAT
83086803 AAAATAAATAAAACAAA
1 AAAATAAA-AAAACAAA
*
83086820 AAAATATCAAAAACGAAA
1 AAAATA-AAAAAAC-AAA
* *
83086838 AATATAAAAAAAGAAA
1 AAAATAAAAAAACAAA
83086854 AA
1 AA
83086856 GAAAATAAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
16 5 0.17
17 16 0.53
18 9 0.30
ACGTcount: A:0.79, C:0.06, G:0.04, T:0.11
Consensus pattern (16 bp):
AAAATAAAAAAACAAA
Found at i:83086838 original size:16 final size:16
Alignment explanation
Indices: 83086810--83086855 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
83086800 TATAAAATAA
*
83086810 ATAAAACAA-AAAAAT
1 ATAAAAAAAGAAAAAT
* *
83086825 ATCAAAAACGAAAAAT
1 ATAAAAAAAGAAAAAT
83086841 ATAAAAAAAGAAAAA
1 ATAAAAAAAGAAAAA
83086856 GAAAATAAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 6 0.24
16 19 0.76
ACGTcount: A:0.78, C:0.07, G:0.04, T:0.11
Consensus pattern (16 bp):
ATAAAAAAAGAAAAAT
Found at i:83087752 original size:90 final size:90
Alignment explanation
Indices: 83087567--83087765 Score: 267
Period size: 90 Copynumber: 2.2 Consensus size: 90
83087557 CTACAACATG
* * * *
83087567 CTCCACTGCAACTTCAAGGAGATAAGGTGTGTTTTGATGTGCTCTACTGCAACTTCAGAGAGACA
1 CTCCACTACAACTTCAGGGAAATAAGGTGTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGACA
* * *
83087632 GGATCTGTAATTTAGCTTCAATCTA
66 CGATCTATAATTTAGCTTCAACCTA
* *
83087657 TTCCACTACAACTTCAGGGAAATAATGTGTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGACA
1 CTCCACTACAACTTCAGGGAAATAAGGTGTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGACA
** *
83087722 CGATCTATAAATTT-TTTTTAACCTA
66 CGATCTAT-AATTTAGCTTCAACCTA
83087747 CTCCACTACAACTT-AGGGA
1 CTCCACTACAACTTCAGGGA
83087766 GATAGGATGG
Statistics
Matches: 95, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
89 5 0.05
90 85 0.89
91 5 0.05
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (90 bp):
CTCCACTACAACTTCAGGGAAATAAGGTGTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGACA
CGATCTATAATTTAGCTTCAACCTA
Found at i:83087834 original size:45 final size:45
Alignment explanation
Indices: 83087784--83088039 Score: 160
Period size: 45 Copynumber: 5.7 Consensus size: 45
83087774 GGTGGCTTAA
* * * * *
83087784 ATCTGCTTCACTGCAACTTCAGAAAGACAAGATTCGCTGTCTTTG
1 ATCTGCTCCACTACAACTTCAGAAAGACAAGATTCACAGTCTTCG
* * * ** * *
83087829 ATCTGCTCTACTGCAACTTTAGGGAGACAAGA-TCTACAATCTT-T
1 ATCTGCTCCACTACAACTTCAGAAAGACAAGATTC-ACAGTCTTCG
* ** * * * * ** * **
83087873 AGCCTGCTCCGTTACAACTTTAGAGAGATAGGA-TGGCGGT-TTAA
1 A-TCTGCTCCACTACAACTTCAGAAAGACAAGATTCACAGTCTTCG
* * *
83087917 ATCTGCTTCACTACAACTTCAGAAAGGCAAGATTCACCGTCTTCG
1 ATCTGCTCCACTACAACTTCAGAAAGACAAGATTCACAGTCTTCG
* ** * *
83087962 ATCTACTCCACTACAACTTCAGGGAGACAAGATTTACAATCTTCG
1 ATCTGCTCCACTACAACTTCAGAAAGACAAGATTCACAGTCTTCG
* *
83088007 ATCTGCTCCACTGCAACTTTAGAAAGACAAGAT
1 ATCTGCTCCACTACAACTTCAGAAAGACAAGAT
83088040 CTAAAATCTT
Statistics
Matches: 157, Mismatches: 49, Indels: 10
0.73 0.23 0.05
Matches are distributed among these distances:
43 24 0.15
44 10 0.06
45 123 0.78
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (45 bp):
ATCTGCTCCACTACAACTTCAGAAAGACAAGATTCACAGTCTTCG
Found at i:83087936 original size:133 final size:132
Alignment explanation
Indices: 83087689--83088004 Score: 398
Period size: 133 Copynumber: 2.4 Consensus size: 132
83087679 TAATGTGTGT
* * * *
83087689 TTTGATCTGCTCTACTGCAACTTCAGAGAGACACGATCTATAAATTTTTTTTAACCTACTCCACT
1 TTTGATCTGCTCTACTGCAACTTCAGGGAGACAAGATCTA-CAA---TCTTTAACCTACTCCACT
* * *
83087754 ACAACTTAGGGAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGAAAGACAAGATTC
62 ACAACTTAGAGAGATAGGATGGCGGCTTAAATCTGCTTCACTACAACTTCAGAAAGACAAGATTC
* *
83087819 GCTGTC
127 ACCGTC
* * * **
83087825 TTTGATCTGCTCTACTGCAACTTTAGGGAGACAAGATCTACAATCTTTAGCCTGCTCCGTTACAA
1 TTTGATCTGCTCTACTGCAACTTCAGGGAGACAAGATCTACAATCTTTAACCTACTCCACTACAA
* *
83087890 CTTTAGAGAGATAGGATGGCGGTTTAAATCTGCTTCACTACAACTTCAGAAAGGCAAGATTCACC
66 C-TTAGAGAGATAGGATGGCGGCTTAAATCTGCTTCACTACAACTTCAGAAAGACAAGATTCACC
83087955 GTC
130 GTC
* * * * *
83087958 TTCGATCTACTCCACTACAACTTCAGGGAGACAAGATTTACAATCTT
1 TTTGATCTGCTCTACTGCAACTTCAGGGAGACAAGATCTACAATCTT
83088005 CGATCTGCTC
Statistics
Matches: 157, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
132 18 0.11
133 100 0.64
135 2 0.01
136 37 0.24
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (132 bp):
TTTGATCTGCTCTACTGCAACTTCAGGGAGACAAGATCTACAATCTTTAACCTACTCCACTACAA
CTTAGAGAGATAGGATGGCGGCTTAAATCTGCTTCACTACAACTTCAGAAAGACAAGATTCACCG
TC
Found at i:83088048 original size:45 final size:45
Alignment explanation
Indices: 83087925--83088067 Score: 146
Period size: 45 Copynumber: 3.2 Consensus size: 45
83087915 AAATCTGCTT
* ***
83087925 CACTACAACTTCAGAAAGGCAAGAT-TCACCGTCTTCGATCTACTC
1 CACTACAACTTCAGAAAGACAAGATCT-AAAATCTTCGATCTACTC
** * * *
83087970 CACTACAACTTCAGGGAGACAAGATTTACAATCTTCGATCTGCTC
1 CACTACAACTTCAGAAAGACAAGATCTAAAATCTTCGATCTACTC
* * *
83088015 CACTGCAACTTTAGAAAGACAAGATCTAAAATCTTC-AGCCTACTC
1 CACTACAACTTCAGAAAGACAAGATCTAAAATCTTCGA-TCTACTC
83088060 CACTACAA
1 CACTACAA
83088068 TTTTAGGGAG
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
44 1 0.01
45 79 0.98
46 1 0.01
ACGTcount: A:0.34, C:0.29, G:0.13, T:0.24
Consensus pattern (45 bp):
CACTACAACTTCAGAAAGACAAGATCTAAAATCTTCGATCTACTC
Found at i:83088097 original size:178 final size:178
Alignment explanation
Indices: 83087823--83088206 Score: 475
Period size: 178 Copynumber: 2.2 Consensus size: 178
83087813 AGATTCGCTG
* * ** * * * **
83087823 TCTTTGATCTGCTCTACTGCAACTTTAGGGAGACAAGATCTACAATCTTTAGCCTGCTCCGTTAC
1 TCTTCGATCTGCTCCACTGCAACTTTAGAAAGACAAGATCTAAAATCTTCAGCCTACTCCACTAC
* * * *
83087888 AACTTTAGAGAGATAGGATGGCGGTTTAAATCTGCTTCACTACAACTTCA-GAAAGGCAAGATTC
66 AACTTTAGAGAGATAGGATGGCGGCTTAAATCTGATTCACTACAACTTCAGGAAA-ACAAAATTC
*
83087952 ACCGTCTTCGATCTACTCCACTACAACTTCAGGGAGACAAGATTTACAA
130 ACCGTCTTCGATCTACTCCACTACAACTTCAGGGAGACAAGATCTACAA
83088001 TCTTCGATCTGCTCCACTGCAACTTTAGAAAGACAAGATCTAAAATCTTCAGCCTACTCCACTAC
1 TCTTCGATCTGCTCCACTGCAACTTTAGAAAGACAAGATCTAAAATCTTCAGCCTACTCCACTAC
* * * * * **
83088066 AATTTTAGGGAGATAGGATGGTGGCTTAAATCTGATTCATTGCAACTTCAGGAAAACAAAATTTG
66 AACTTTAGAGAGATAGGATGGCGGCTTAAATCTGATTCACTACAACTTCAGGAAAACAAAATTCA
* ** * *
83088131 CCGTTTTCGATCTGTTCTACTGCAACTTCAGGGAGACAAGATCTACAA
131 CCGTCTTCGATCTACTCCACTACAACTTCAGGGAGACAAGATCTACAA
* * *
83088179 TCTTC-AGCCTACTCCACTACAACTTTAG
1 TCTTCGA-TCTGCTCCACTGCAACTTTAG
83088207 GGAGATAGGA
Statistics
Matches: 175, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
177 1 0.01
178 170 0.97
179 4 0.02
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (178 bp):
TCTTCGATCTGCTCCACTGCAACTTTAGAAAGACAAGATCTAAAATCTTCAGCCTACTCCACTAC
AACTTTAGAGAGATAGGATGGCGGCTTAAATCTGATTCACTACAACTTCAGGAAAACAAAATTCA
CCGTCTTCGATCTACTCCACTACAACTTCAGGGAGACAAGATCTACAA
Found at i:83088112 original size:133 final size:133
Alignment explanation
Indices: 83087970--83088307 Score: 496
Period size: 133 Copynumber: 2.5 Consensus size: 133
83087960 CGATCTACTC
* * ** * **
83087970 CACTACAACTTCAGGGAGACAAGATTTACAATCTTCGATCTGCTCCACTGCAACTTTAGAAAGAC
1 CACTGCAACTTCAGGAAGACAAGATTTACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAGAC
*
83088035 AAGATCTAAAATCTTCAGCCTACTCCACTACAATTTTAGGGAGATAGGATGGTGGCTTAAATCTG
66 AAGATCTAAAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTG
83088100 ATT
131 ATT
* * * * * * *
83088103 CATTGCAACTTCAGGAAAACAAAATTTGCCGTTTTCGATCTGTTCTACTGCAACTTCAGGGAGAC
1 CACTGCAACTTCAGGAAGACAAGATTTACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAGAC
* *
83088168 AAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATTTG
66 AAGATCTAAAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTG
*
83088233 CTT
131 ATT
* *
83088236 CACTGCAACTTCAGGAAGACAAGATTCACCGTCTTCGATCTGCTCCACTGTAACTTCAGGGAGAC
1 CACTGCAACTTCAGGAAGACAAGATTTACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAGAC
83088301 AAGATCT
66 AAGATCT
83088308 GTAGAATCAG
Statistics
Matches: 178, Mismatches: 27, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
133 178 1.00
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (133 bp):
CACTGCAACTTCAGGAAGACAAGATTTACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAGAC
AAGATCTAAAATCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATGGTGGCTTAAATCTG
ATT
Found at i:83088182 original size:311 final size:312
Alignment explanation
Indices: 83087692--83088305 Score: 894
Period size: 311 Copynumber: 2.0 Consensus size: 312
83087682 TGTGTGTTTT
* * * * *
83087692 GATCTGCTCTACTGCAACTTCAGAGAGACACGATCTATAAATTTTTTTTAACCTACTCCACTACA
1 GATCTGCTCCACTGCAACTTCAGAAAGACAAGATCTATAAA--TTCTTCAACCTACTCCACTACA
* * *
83087757 ACTTAGGGAGATAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGAAAGACAAGATTCGCT
64 ACTTAGGGAGATAGGATGGTGGCTTAAATCTGATTCACTGCAACTTCAGAAAGACAAAATTCGCC
* * * **
83087822 GTCTTTGATCTGCTCTACTGCAACTTTAGGGAGACAAGATCTACAATCTTTAGCCTGCTCCGTTA
129 GTCTTTGATCTGCTCTACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTA
* *
83087887 CAACTTTAGAGAGATAGGATGGCGGTTTAAATCTGCTTCACTACAACTTCAGAAAGGCAAGATTC
194 CAACTTTAGAGAGATAGGATGGCGGCTTAAATCTGCTTCACTACAACTTCAGAAAGACAAGATTC
83087952 ACCGTCTTCGATCTACTCCACTACAACTTCAGGGAGACAAGATTTACAATCTTC
259 ACCGTCTTCGATCTACTCCACTACAACTTCAGGGAGACAAGATTTACAATCTTC
* *
83088006 GATCTGCTCCACTGCAACTTTAGAAAGACAAGATCTA-AAA-TCTTCAGCCTACTCCACTACAAT
1 GATCTGCTCCACTGCAACTTCAGAAAGACAAGATCTATAAATTCTTCAACCTACTCCACTACAA-
* * *
83088069 TTTAGGGAGATAGGATGGTGGCTTAAATCTGATTCATTGCAACTTCAGGAAA-ACAAAATTTGCC
65 CTTAGGGAGATAGGATGGTGGCTTAAATCTGATTCACTGCAACTTCA-GAAAGACAAAATTCGCC
*
83088133 GT-TTTCGATCTGTTCTACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACT
129 GTCTTT-GATCTGCTCTACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACT
* * * * *
83088197 ACAACTTTAGGGAGATAGGATGGTGGCTTAAATTTGCTTCACTGCAACTTCAGGAAGACAAGATT
193 ACAACTTTAGAGAGATAGGATGGCGGCTTAAATCTGCTTCACTACAACTTCAGAAAGACAAGATT
* **
83088262 CACCGTCTTCGATCTGCTCCACTGTAACTTCAGGGAGACAAGAT
258 CACCGTCTTCGATCTACTCCACTACAACTTCAGGGAGACAAGAT
83088306 CTGTAGAATC
Statistics
Matches: 268, Mismatches: 29, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
310 22 0.08
311 206 0.77
312 4 0.01
313 3 0.01
314 33 0.12
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (312 bp):
GATCTGCTCCACTGCAACTTCAGAAAGACAAGATCTATAAATTCTTCAACCTACTCCACTACAAC
TTAGGGAGATAGGATGGTGGCTTAAATCTGATTCACTGCAACTTCAGAAAGACAAAATTCGCCGT
CTTTGATCTGCTCTACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACA
ACTTTAGAGAGATAGGATGGCGGCTTAAATCTGCTTCACTACAACTTCAGAAAGACAAGATTCAC
CGTCTTCGATCTACTCCACTACAACTTCAGGGAGACAAGATTTACAATCTTC
Found at i:83100846 original size:18 final size:18
Alignment explanation
Indices: 83100823--83100857 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
83100813 GTACCTGCTC
83100823 AACTCTAGCAACAGGCTT
1 AACTCTAGCAACAGGCTT
* *
83100841 AACTCTGGCAACTGGCT
1 AACTCTAGCAACAGGCT
83100858 CTGCCTCATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (18 bp):
AACTCTAGCAACAGGCTT
Found at i:83106498 original size:17 final size:18
Alignment explanation
Indices: 83106476--83106522 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
83106466 TAAAATTGTA
83106476 ATATTATATAATTTAT-C
1 ATATTATATAATTTATAC
*
83106493 ATATTAT-TAA-ATATAC
1 ATATTATATAATTTATAC
83106509 ATATTTATATAATT
1 ATA-TTATATAATT
83106523 ATTTATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
15 3 0.12
16 7 0.29
17 11 0.46
18 3 0.12
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (18 bp):
ATATTATATAATTTATAC
Found at i:83106958 original size:37 final size:37
Alignment explanation
Indices: 83106907--83106981 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
83106897 TTTGTTCTTG
* * *
83106907 ACAGGGAATAACTCCTATTCATTTTTGTTTTTGCTCT
1 ACAGAGAATAACTCCTATTCATTTCTGTCTTTGCTCT
* *
83106944 ACAGAGAATCACTCCTGTTCATTTCTGTCTTTGCTCT
1 ACAGAGAATAACTCCTATTCATTTCTGTCTTTGCTCT
83106981 A
1 A
83106982 TAGGAAATCT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43
Consensus pattern (37 bp):
ACAGAGAATAACTCCTATTCATTTCTGTCTTTGCTCT
Found at i:83111418 original size:153 final size:152
Alignment explanation
Indices: 83111049--83111472 Score: 638
Period size: 154 Copynumber: 2.8 Consensus size: 152
83111039 ACTCTATTTC
* * * * *
83111049 GAAATAGTTAAAAAAAATAAAAATTTTGTTTTAAAATTTTAAATTTTTCTTTAAAATGACTTAAA
1 GAAATAGTTAAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTAAAA
* *
83111114 AAAACATATTTTTATTTTTCAAAATCTAAACTTTCTCTCTCTTTT--AAAAAAAACACTATTTTT
66 AAAATAAATTTTTATTTTTCAAAATCTAAACTTTCTC-CT-TTTTAAAAAAAAAACACTATTTTT
*
83111177 CTTAAAGATTAAAGCTTTTATTTT
129 CTTAAAGATTAAAGCTTTTACTTT
*
83111201 GAAGTAGTTGAAAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTAA
1 GAAATAGTT--AAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTAA
*
83111266 AAAAAATAGATTTTTATTTTTCAAAATCTAAACTTTCTCCTTTTTAAAAATAAAAACACTATTTT
64 AAAAAATAAATTTTTATTTTTCAAAATCTAAACTTTCTCCTTTTTAAAAA-AAAAACACTATTTT
83111331 TCTTAAAGATTAAAGCTTTTACTTT
128 TCTTAAAGATTAAAGCTTTTACTTT
* *
83111356 GAAATAGTTAAAAAAAATCAAAACTTTGTTTTAAAATTTTGAACTTTCCTTTAAAATAACTAAAA
1 GAAATAGTTAAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTAAAA
* *
83111421 ATAAATAAATTTTTATTTGTT-AAAATCTAAAATTTCTCTTTTTTAAAAAAAA
66 A-AAATAAATTTTTATTT-TTCAAAATCTAAACTTTCTCCTTTTTAAAAAAAA
83111473 TAAAAAATTC
Statistics
Matches: 250, Mismatches: 15, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
152 12 0.05
153 60 0.24
154 130 0.52
155 48 0.19
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (152 bp):
GAAATAGTTAAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTAAAA
AAAATAAATTTTTATTTTTCAAAATCTAAACTTTCTCCTTTTTAAAAAAAAAACACTATTTTTCT
TAAAGATTAAAGCTTTTACTTT
Found at i:83111651 original size:4 final size:4
Alignment explanation
Indices: 83111642--83111668 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
83111632 TATGACAAAA
83111642 AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAA
83111669 TAGAATGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:83114329 original size:43 final size:43
Alignment explanation
Indices: 83114267--83114478 Score: 202
Period size: 43 Copynumber: 5.0 Consensus size: 43
83114257 ATGTGACATT
* * *
83114267 GATATGTGATTACGAGTAAGACCACGTTTGGGACGTTGGCGTC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
83114310 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
* * * *
83114353 GATATGT-AGTTACGTGTAAGACCATGTCTGGGACATCGGTATC
1 GATATGTGA-TTACGTGTAAGACCACGTCTGGGACGTTGGCATC
* * **
83114396 G-TATTTGATT-CATGTAAGACC-CTGTCTGGGACAG-CAGCATC
1 GATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATC
** * * *
83114437 GATATAAGA-TAGCATGTAAGACCACGTCTAGGACATTGGCAT
1 GATATGTGATTA-CGTGTAAGACCACGTCTGGGACGTTGGCAT
83114479 TGTACGATAT
Statistics
Matches: 141, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
41 26 0.18
42 12 0.09
43 102 0.72
44 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (43 bp):
GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:83126255 original size:27 final size:28
Alignment explanation
Indices: 83126208--83126265 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
83126198 TCTTAATTAA
**
83126208 TTTTTTTATTAAAAAGATATTGTATTTC
1 TTTTTTTATTAAAAAGATATTCCATTTC
*
83126236 TTTTTTT-TTACAAAA-TTATTCCATTTC
1 TTTTTTTATTA-AAAAGATATTCCATTTC
83126263 TTT
1 TTT
83126266 GTTCATTTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 15 0.58
28 11 0.42
ACGTcount: A:0.28, C:0.09, G:0.03, T:0.60
Consensus pattern (28 bp):
TTTTTTTATTAAAAAGATATTCCATTTC
Found at i:83126952 original size:19 final size:19
Alignment explanation
Indices: 83126913--83126954 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
83126903 TCTAATTGAA
*
83126913 ATTTATTATTTATTATAAT
1 ATTTATTATTTATTAAAAT
83126932 ATTTATT-TTTATTAAATAT
1 ATTTATTATTTATTAAA-AT
83126951 ATTT
1 ATTT
83126955 GGATAGATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTATTATTTATTAAAAT
Found at i:83127699 original size:55 final size:54
Alignment explanation
Indices: 83127620--83127734 Score: 194
Period size: 55 Copynumber: 2.1 Consensus size: 54
83127610 TTTTAGTTGT
* * *
83127620 TTCTTTTTTTTTCTATATTTTCTATACTTGAGCTTTTTATAATATTTTGAAATA
1 TTCTTTTTTTTTCTATATTCTCTATACTTGAGATTTTTATAATATTCTGAAATA
83127674 TTCTTTTTCTTTTCTATATTCTCTATACTTGAGATTTTTATAATATTCTGAAATA
1 TTCTTTTT-TTTTCTATATTCTCTATACTTGAGATTTTTATAATATTCTGAAATA
83127729 TTCTTT
1 TTCTTT
83127735 CTCCTATTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
54 8 0.14
55 49 0.86
ACGTcount: A:0.23, C:0.11, G:0.05, T:0.60
Consensus pattern (54 bp):
TTCTTTTTTTTTCTATATTCTCTATACTTGAGATTTTTATAATATTCTGAAATA
Found at i:83135291 original size:37 final size:37
Alignment explanation
Indices: 83135239--83135323 Score: 107
Period size: 37 Copynumber: 2.3 Consensus size: 37
83135229 TGTGAGTACG
* * * **
83135239 TGTAAGACCACAACTGGGCTATGGCATCGTAATGGCA
1 TGTAAGACCATAACTGAGATATGGCATCGTAATCCCA
* *
83135276 TGTAAGACCATAACTGAGATATGGCATTGTGATCCCA
1 TGTAAGACCATAACTGAGATATGGCATCGTAATCCCA
83135313 TGTAAGACCAT
1 TGTAAGACCAT
83135324 GTCTGGGACA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.25
Consensus pattern (37 bp):
TGTAAGACCATAACTGAGATATGGCATCGTAATCCCA
Found at i:83135363 original size:48 final size:48
Alignment explanation
Indices: 83135303--83135531 Score: 289
Period size: 48 Copynumber: 4.8 Consensus size: 48
83135293 GATATGGCAT
* *
83135303 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATA
1 TGTGATCACATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * * *
83135351 TGTGATCACATGTAAGACCATGTTTGGGACATGGCATTAGTATCAATA
1 TGTGATCACATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
83135399 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGAATCTATA
1 TGTGATCACATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
83135447 TGTGAT-ACCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
1 TGTGATCA-CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
** * * * *
83135495 TGTGATTTCGTTTAAGACTATGTTTGGGACATGGCAT
1 TGTGATCACATGTAAGACCATGTCTGGGACATGGCAT
83135532 CGATATGAGA
Statistics
Matches: 156, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
48 156 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (48 bp):
TGTGATCACATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:83137175 original size:40 final size:40
Alignment explanation
Indices: 83137105--83137198 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
83137095 CCGACTCCGT
* * *
83137105 CCAACCCAACACACC--ATGTGGGGATAAAATCGACCCAC
1 CCAACCCTACACACCAAATATGGGAATAAAATCGACCCAC
* *
83137143 CCATCCCTACACACCAAATATGGGAATAAAATCGACCCAT
1 CCAACCCTACACACCAAATATGGGAATAAAATCGACCCAC
*
83137183 CCAACCTTACACACCA
1 CCAACCCTACACACCA
83137199 TAAAGTACCA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 13 0.28
40 34 0.72
ACGTcount: A:0.38, C:0.37, G:0.11, T:0.14
Consensus pattern (40 bp):
CCAACCCTACACACCAAATATGGGAATAAAATCGACCCAC
Found at i:83162875 original size:8 final size:8
Alignment explanation
Indices: 83162862--83162887 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
83162852 TGTTACTACT
83162862 CACTTTTA
1 CACTTTTA
83162870 CACTTTTA
1 CACTTTTA
83162878 CACTTTTA
1 CACTTTTA
83162886 CA
1 CA
83162888 AATAAGTCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.46
Consensus pattern (8 bp):
CACTTTTA
Found at i:83170893 original size:39 final size:39
Alignment explanation
Indices: 83170850--83170925 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
83170840 TTCGTAAGTA
83170850 GTTTACCTCTAAGTCTCATTAGGAAGGATTCAGCGTGTG
1 GTTTACCTCTAAGTCTCATTAGGAAGGATTCAGCGTGTG
*
83170889 GTTTACCTCTAAGTCTCTTTAGGAAGGATTCAGCGTG
1 GTTTACCTCTAAGTCTCATTAGGAAGGATTCAGCGTG
83170926 GGTGATTGTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.34
Consensus pattern (39 bp):
GTTTACCTCTAAGTCTCATTAGGAAGGATTCAGCGTGTG
Found at i:83172765 original size:31 final size:30
Alignment explanation
Indices: 83172714--83172801 Score: 79
Period size: 29 Copynumber: 2.9 Consensus size: 30
83172704 GTGAGACCCC
* **
83172714 TTGCATGTGAGACCACATAGGCGAACCCTCT
1 TTGCATGTGAAACCTTATAGGCGAACCCT-T
* *
83172745 TTGCATGTGAAACCTTATAGGC-TAGCCTT
1 TTGCATGTGAAACCTTATAGGCGAACCCTT
* * * *
83172774 TGGTATGCGAACCCTTATAGGCGAACCC
1 TTGCATGTGAAACCTTATAGGCGAACCC
83172802 CAATTGTGAA
Statistics
Matches: 45, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
29 19 0.42
30 7 0.16
31 19 0.42
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (30 bp):
TTGCATGTGAAACCTTATAGGCGAACCCTT
Found at i:83177926 original size:17 final size:17
Alignment explanation
Indices: 83177896--83177929 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
83177886 AATAATAATG
83177896 CTAATAAATTTAAAAAA
1 CTAATAAATTTAAAAAA
83177913 CTAA-AAATTATAAAAAA
1 CTAATAAATT-TAAAAAA
83177930 ATCTTAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
CTAATAAATTTAAAAAA
Found at i:83177974 original size:24 final size:25
Alignment explanation
Indices: 83177947--83178001 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 25
83177937 AATTCATATT
83177947 TATTTT-CTATAATTATAAAAAAAA
1 TATTTTACTATAATTATAAAAAAAA
*
83177971 TATTTTAAATTATAATTATAAAAAAAA
1 TATTTT--ACTATAATTATAAAAAAAA
83177998 TATT
1 TATT
83178002 AAAAAGATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 6 0.22
27 21 0.78
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (25 bp):
TATTTTACTATAATTATAAAAAAAA
Found at i:83178501 original size:14 final size:16
Alignment explanation
Indices: 83178484--83178522 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
83178474 TAAAACATGT
83178484 AAAATA-ATTTT-TTA
1 AAAATATATTTTGTTA
*
83178498 AAAATATATTTTGTTT
1 AAAATATATTTTGTTA
83178514 AAAATATAT
1 AAAATATAT
83178523 ATATAAACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.27
15 5 0.23
16 11 0.50
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (16 bp):
AAAATATATTTTGTTA
Found at i:83179808 original size:21 final size:21
Alignment explanation
Indices: 83179783--83179851 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
83179773 CAAACATGGA
83179783 CGTGTGGCTACCCCACACGCC
1 CGTGTGGCTACCCCACACGCC
* *
83179804 CGTGTGGCTACCCCACATGCT
1 CGTGTGGCTACCCCACACGCC
* * * *
83179825 CATGTGGCTACTCTACACGTC
1 CGTGTGGCTACCCCACACGCC
83179846 CGTGTG
1 CGTGTG
83179852 CTCAGACCAT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.14, C:0.38, G:0.25, T:0.23
Consensus pattern (21 bp):
CGTGTGGCTACCCCACACGCC
Found at i:83191103 original size:19 final size:18
Alignment explanation
Indices: 83191054--83191105 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
83191044 ACAAAGGTAG
83191054 CATATAATAATT-ATAATT
1 CATATAAT-ATTCATAATT
*
83191072 CATATACTATTCATAATT
1 CATATAATATTCATAATT
*
83191090 CATGTAAATATTCATA
1 CATAT-AATATTCATA
83191106 TATATATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 3 0.10
18 17 0.59
19 9 0.31
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (18 bp):
CATATAATATTCATAATT
Found at i:83197394 original size:22 final size:24
Alignment explanation
Indices: 83197341--83197396 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
83197331 TCTTCCAAAG
*
83197341 TTTTATTTCACTTTCATTTGTAGT
1 TTTTATTTCACTTTCATTTGTAAT
** *
83197365 TTAGATTTCTC-TT-ATTTGTAAT
1 TTTTATTTCACTTTCATTTGTAAT
83197387 TTTTATTTCA
1 TTTTATTTCA
83197397 GTTTTTATTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
22 15 0.60
23 2 0.08
24 8 0.32
ACGTcount: A:0.20, C:0.11, G:0.07, T:0.62
Consensus pattern (24 bp):
TTTTATTTCACTTTCATTTGTAAT
Found at i:83216102 original size:28 final size:28
Alignment explanation
Indices: 83216070--83216125 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
83216060 AATAAAAGTT
83216070 AGCCAAATTCTTCAACAATTCATCTATA
1 AGCCAAATTCTTCAACAATTCATCTATA
83216098 AGCCAAATTCTTCAACAATTCATCTATA
1 AGCCAAATTCTTCAACAATTCATCTATA
83216126 CATCCTACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.25, G:0.04, T:0.32
Consensus pattern (28 bp):
AGCCAAATTCTTCAACAATTCATCTATA
Found at i:83219731 original size:41 final size:41
Alignment explanation
Indices: 83219677--83219757 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
83219667 AAGTAGTTTA
* * ** *
83219677 GGCCTTAGCCCATTTCAGTTTCAGTATCAGATATGCATTAG
1 GGCCTAAGCCCATTACAGTAACAGTATCAGATATACATTAG
83219718 GGCCTAAGCCCATTACAGTAACAGTATCAGATATACATTA
1 GGCCTAAGCCCATTACAGTAACAGTATCAGATATACATTA
83219758 ATCAGTAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (41 bp):
GGCCTAAGCCCATTACAGTAACAGTATCAGATATACATTAG
Found at i:83220336 original size:17 final size:19
Alignment explanation
Indices: 83220304--83220343 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
83220294 ATGTGGACTA
83220304 CCCATATGGACCCACAC-G
1 CCCATATGGACCCACACTG
*
83220322 CCCATGTGG-CCCACACTG
1 CCCATATGGACCCACACTG
83220340 CCCA
1 CCCA
83220344 GATCAGTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.23, C:0.47, G:0.17, T:0.12
Consensus pattern (19 bp):
CCCATATGGACCCACACTG
Found at i:83233621 original size:16 final size:16
Alignment explanation
Indices: 83233600--83233637 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
83233590 TATGTGATGA
83233600 ATGTGAACATGCATAT
1 ATGTGAACATGCATAT
83233616 ATGTGAACATGCATAT
1 ATGTGAACATGCATAT
83233632 ATGTGA
1 ATGTGA
83233638 TAAGGCCGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (16 bp):
ATGTGAACATGCATAT
Found at i:83233649 original size:47 final size:47
Alignment explanation
Indices: 83233616--83233792 Score: 300
Period size: 47 Copynumber: 3.8 Consensus size: 47
83233606 ACATGCATAT
*
83233616 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCTATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
83233663 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * *
83233710 ACGTGAACATGCATATTTGTGATAAGGCCGAATGGCCAATGTGGTGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
83233757 ATATGAACATGCATATATGTGATAAAGCCGAATGGC
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGC
83233793 TAGTGTGAAA
Statistics
Matches: 122, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 122 1.00
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.26
Consensus pattern (47 bp):
ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:83234059 original size:37 final size:37
Alignment explanation
Indices: 83233955--83234063 Score: 130
Period size: 37 Copynumber: 2.9 Consensus size: 37
83233945 GGGAATATAT
* * * *
83233955 TCCGGGTGAGACCCGATGACTAT-GTGTAGAGAGTATG
1 TCCGGGTAAGACCCGATGACT-TCGTGTGGAGATTTTG
* *
83233992 TCCGGGTAAGACCCGATGACTACGTATGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTTTG
**
83234029 TCCGGGTAAGACCCGAAAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTT
83234064 CGTCTGAGCT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTTTG
Found at i:83237273 original size:19 final size:20
Alignment explanation
Indices: 83237251--83237294 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
83237241 TCAAAAACTC
* *
83237251 AAAATAATTCTTAAAATT-T
1 AAAATAATTATAAAAATTCT
*
83237270 AAAATATTTATAAAAATTCT
1 AAAATAATTATAAAAATTCT
83237290 AAAAT
1 AAAAT
83237295 TTATATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAATAATTATAAAAATTCT
Found at i:83237316 original size:23 final size:24
Alignment explanation
Indices: 83237273--83237318 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
83237263 AAAATTTAAA
*
83237273 ATATTTATAAAAATTCTAAAATTT
1 ATATTTATAAAAATTCAAAAATTT
83237297 ATATTTA-AAAAATAT-AAAAATT
1 ATATTTATAAAAAT-TCAAAAATT
83237319 AAAAATTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
ATATTTATAAAAATTCAAAAATTT
Found at i:83241413 original size:23 final size:23
Alignment explanation
Indices: 83241380--83241506 Score: 127
Period size: 23 Copynumber: 5.5 Consensus size: 23
83241370 TTTTTTACAA
* *
83241380 AGAATCCTCACTAGTTATTGTAG
1 AGAATCTTCACTAGTTATTGCAG
*
83241403 GGAATCTTCACT-GTTCATTGCAG
1 AGAATCTTCACTAGTT-ATTGCAG
* *
83241426 -GAAATCTTCACTACTTATTGCAC
1 AG-AATCTTCACTAGTTATTGCAG
* *
83241449 AGAATCTTTACT-GTTTATTGTAG
1 AGAATCTTCACTAG-TTATTGCAG
83241472 AGAATCTTCACTA-TTAATTGCAG
1 AGAATCTTCACTAGTT-ATTGCAG
83241495 AGAATCTTCACT
1 AGAATCTTCACT
83241507 GTTCGTCTTT
Statistics
Matches: 86, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
22 6 0.07
23 77 0.90
24 3 0.03
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (23 bp):
AGAATCTTCACTAGTTATTGCAG
Found at i:83241454 original size:46 final size:46
Alignment explanation
Indices: 83241404--83241510 Score: 146
Period size: 46 Copynumber: 2.3 Consensus size: 46
83241394 TTATTGTAGG
83241404 GAATCTTCACTGTTCATTGCAG-GAAATCTTCACTACTT-ATTGCACA
1 GAATCTTCACTGTTCATTGCAGAG-AATCTTCACTA-TTAATTGCACA
* * * *
83241450 GAATCTTTACTGTTTATTGTAGAGAATCTTCACTATTAATTGCAGA
1 GAATCTTCACTGTTCATTGCAGAGAATCTTCACTATTAATTGCACA
83241496 GAATCTTCACTGTTC
1 GAATCTTCACTGTTC
83241511 GTCTTTGTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
45 2 0.04
46 50 0.94
47 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (46 bp):
GAATCTTCACTGTTCATTGCAGAGAATCTTCACTATTAATTGCACA
Found at i:83244883 original size:40 final size:40
Alignment explanation
Indices: 83244799--83245022 Score: 242
Period size: 40 Copynumber: 5.6 Consensus size: 40
83244789 TTGAATGCTG
* *
83244799 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
** * * *
83244838 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
83244879 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
83244919 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * ** *
83244959 TTCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACT-AAT
83244999 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
83245023 GAATGAGTTA
Statistics
Matches: 160, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
39 3 0.02
40 145 0.91
41 12 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:83245043 original size:39 final size:39
Alignment explanation
Indices: 83244879--83245069 Score: 127
Period size: 40 Copynumber: 4.8 Consensus size: 39
83244869 AGTTATTAAT
* ** * *
83244879 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACT-AAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAG-TTCTAAAA
* ** * *
83244919 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACT-AAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAG-TTCTAAAA
* ** *
83244959 TTCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* *
83244999 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* * *
83245039 -CCGGGCTATGTCCTGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
83245070 GAGCTAAATC
Statistics
Matches: 132, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 29 0.22
40 103 0.78
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:83255544 original size:14 final size:13
Alignment explanation
Indices: 83255508--83255545 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
83255498 AAATTTAAAT
83255508 CTAAATAATTATC
1 CTAAATAATTATC
*
83255521 CTTAATAATTATC
1 CTAAATAATTATC
83255534 CTAATATAATTA
1 CTAA-ATAATTA
83255546 AACATTAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:83256853 original size:21 final size:20
Alignment explanation
Indices: 83256828--83256866 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
83256818 AATTATATGG
*
83256828 GCAACAACAACCAAAACAGAA
1 GCAACAACAA-AAAAACAGAA
83256849 GCAACAACAAAAAAACAG
1 GCAACAACAAAAAAACAG
83256867 CATCTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.64, C:0.26, G:0.10, T:0.00
Consensus pattern (20 bp):
GCAACAACAAAAAAACAGAA
Found at i:83275248 original size:14 final size:13
Alignment explanation
Indices: 83275212--83275249 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
83275202 AAATTTAAAT
83275212 CTAAATAATTATC
1 CTAAATAATTATC
*
83275225 CTTAATAATTATC
1 CTAAATAATTATC
83275238 CTAATATAATTA
1 CTAA-ATAATTA
83275250 AACATTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:83283840 original size:27 final size:27
Alignment explanation
Indices: 83283802--83283869 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
83283792 CCATTACAGA
* *
83283802 TTCAGATATAGTTTAATCTTTAGCCCG
1 TTCAGATATAGTTTAAGCCTTAGCCCG
*
83283829 TTCAGATATAGTTTAGGCCTTAGCCCG
1 TTCAGATATAGTTTAAGCCTTAGCCCG
*
83283856 TTCAGATACAGTTT
1 TTCAGATATAGTTT
83283870 TAGATATAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
TTCAGATATAGTTTAAGCCTTAGCCCG
Found at i:83289204 original size:48 final size:48
Alignment explanation
Indices: 83289133--83289309 Score: 227
Period size: 48 Copynumber: 3.7 Consensus size: 48
83289123 AGTACCAATA
* * *
83289133 CCATGTCCCCGACATGGTCTTACATGAATC-CACATATCATCGTCGATG
1 CCATGTCCCAGACATGGTCTTACATG-AGCACACATATCATCGACGATG
*
83289181 CCATGTCCCAGACATGGTCTTACATTG-GCACACATATCATCGCCGATG
1 CCATGTCCCAGACATGGTCTTACA-TGAGCACACATATCATCGACGATG
* * *
83289229 CCATGTCCCAGACATGGTCTTACA-CAGGCACATATATCATCGACGATA
1 CCATGTCCCAGACATGGTCTTACATGA-GCACACATATCATCGACGATG
83289277 CCATGTCCCAGACATGGTCTTACAT-AGGCACAC
1 CCATGTCCCAGACATGGTCTTACATGA-GCACAC
83289310 GTCTTGAATA
Statistics
Matches: 116, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
47 1 0.01
48 113 0.97
49 2 0.02
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACATGAGCACACATATCATCGACGATG
Found at i:83289297 original size:96 final size:96
Alignment explanation
Indices: 83289133--83289309 Score: 266
Period size: 96 Copynumber: 1.8 Consensus size: 96
83289123 AGTACCAATA
* * * * *
83289133 CCATGTCCCCGACATGGTCTTACATGAATCCACATATCATCGTCGATGCCATGTCCCAGACATGG
1 CCATGTCCCAGACATGGTCTTACATCAAGCCACATATCATCGACGATACCATGTCCCAGACATGG
*
83289198 TCTTACATTGGCACACATATCATCGCCGATG
66 TCTTACATAGGCACACATATCATCGCCGATG
* *
83289229 CCATGTCCCAGACATGGTCTTACA-CAGGCACATATATCATCGACGATACCATGTCCCAGACATG
1 CCATGTCCCAGACATGGTCTTACATCAAGC-CACATATCATCGACGATACCATGTCCCAGACATG
83289293 GTCTTACATAGGCACAC
65 GTCTTACATAGGCACAC
83289310 GTCTTGAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
95 2 0.03
96 70 0.97
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (96 bp):
CCATGTCCCAGACATGGTCTTACATCAAGCCACATATCATCGACGATACCATGTCCCAGACATGG
TCTTACATAGGCACACATATCATCGCCGATG
Found at i:83297949 original size:28 final size:28
Alignment explanation
Indices: 83297889--83297949 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
83297879 TGAAGTCGTA
* **
83297889 ACATTAAGTCTCTATTCCCATAGTTGTG
1 ACATTAAGCCTCTATTCCCATAGTCATG
* * *
83297917 GCATTAAGCCTCTGTTCTCATAGTCATG
1 ACATTAAGCCTCTATTCCCATAGTCATG
83297945 ACATT
1 ACATT
83297950 CCCATGTTGA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.38
Consensus pattern (28 bp):
ACATTAAGCCTCTATTCCCATAGTCATG
Found at i:83300902 original size:13 final size:14
Alignment explanation
Indices: 83300886--83300914 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
83300876 TTTTAAATAT
83300886 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
83300899 TTATAATGGTTTAA
1 TTATAATGGTTTAA
83300913 TT
1 TT
83300915 CGTCGTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:83301780 original size:43 final size:43
Alignment explanation
Indices: 83301701--83301783 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
83301691 TTAGTGGCAT
* * *
83301701 TTTTTTCACAAACGCTGCTAAAGAACAATACTTTTAGCAGTGC
1 TTTTTTCAAAAACGCCGCTAAAGAACAATACCTTTAGCAGTGC
* *
83301744 TTTTTTCAAAAATGCCGCTAAAGAA-TATGACCTTTAGCAG
1 TTTTTTCAAAAACGCCGCTAAAGAACAAT-ACCTTTAGCAG
83301784 CGTTTTCAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 2 0.06
43 32 0.94
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (43 bp):
TTTTTTCAAAAACGCCGCTAAAGAACAATACCTTTAGCAGTGC
Found at i:83304465 original size:18 final size:19
Alignment explanation
Indices: 83304425--83304469 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 19
83304415 GGTTTAATCG
*
83304425 AAATTTTTTTAATATTTTT
1 AAATTTTTATAATATTTTT
83304444 --ATTTTTATAA-ATTTTT
1 AAATTTTTATAATATTTTT
83304460 AAATTTTTAT
1 AAATTTTTAT
83304470 TTAATTGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
16 6 0.26
17 9 0.39
18 8 0.35
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
AAATTTTTATAATATTTTT
Found at i:83305546 original size:19 final size:19
Alignment explanation
Indices: 83305497--83305547 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
83305487 ATTATTTTAA
*
83305497 TAATTTTTTT-AAGAAAAC
1 TAATTTTTTTAAATAAAAC
* *
83305515 T-ATTTTTAATAAATAAAAT
1 TAATTTTT-TTAAATAAAAC
83305534 TAATTTTTTTAAAT
1 TAATTTTTTTAAAT
83305548 TTTAATAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
17 6 0.23
18 2 0.08
19 12 0.46
20 6 0.23
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (19 bp):
TAATTTTTTTAAATAAAAC
Found at i:83306718 original size:17 final size:17
Alignment explanation
Indices: 83306693--83306726 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
83306683 GGTTTAACTA
*
83306693 TTTAATTAATTTTTATT
1 TTTAATTAATTATTATT
*
83306710 TTTATTTAATTATTATT
1 TTTAATTAATTATTATT
83306727 GAATAAGGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTAATTAATTATTATT
Found at i:83316538 original size:5 final size:5
Alignment explanation
Indices: 83316520--83316575 Score: 76
Period size: 5 Copynumber: 11.0 Consensus size: 5
83316510 TATCAAAAAG
* *
83316520 TTGATA TTGGA TTGAA TTGAA TTGAA TTGAA TTGAA TTAAA TTGAA TTGAA
1 TTGA-A TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA TTGAA
*
83316571 CTGAA
1 TTGAA
83316576 CTGATTAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
5 42 0.93
6 3 0.07
ACGTcount: A:0.39, C:0.02, G:0.20, T:0.39
Consensus pattern (5 bp):
TTGAA
Found at i:83317631 original size:16 final size:16
Alignment explanation
Indices: 83317610--83317640 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83317600 AGGTGTGCAT
83317610 GGTTCGGGCCGGGCCG
1 GGTTCGGGCCGGGCCG
*
83317626 GGTTCGGGCTGGGCC
1 GGTTCGGGCCGGGCC
83317641 CACAAAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.29, G:0.55, T:0.16
Consensus pattern (16 bp):
GGTTCGGGCCGGGCCG
Found at i:83317872 original size:40 final size:41
Alignment explanation
Indices: 83317828--83317914 Score: 113
Period size: 40 Copynumber: 2.1 Consensus size: 41
83317818 TCAAATACAT
83317828 TTAAAACAAATATTAAAACAAGAAACAA-ATAAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAATATAAAAAATATA
* * * * * *
83317868 TTAAAACAATTCTTAAAACAATACACAATTTGAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAATATAAAAAATATA
83317909 TTAAAA
1 TTAAAA
83317915 ATTGATTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 24 0.60
41 16 0.40
ACGTcount: A:0.63, C:0.09, G:0.02, T:0.25
Consensus pattern (41 bp):
TTAAAACAAATATTAAAACAAGAAACAATATAAAAAATATA
Found at i:83317966 original size:24 final size:23
Alignment explanation
Indices: 83317929--83317975 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
83317919 ATTATATTAA
* *
83317929 AATTAAAATTAAAATATAAATAT
1 AATTAAAATGAAAAAATAAATAT
*
83317952 AATTAAAAATGAAAAAATATATAT
1 AATT-AAAATGAAAAAATAAATAT
83317976 TTATTATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (23 bp):
AATTAAAATGAAAAAATAAATAT
Found at i:83327333 original size:18 final size:17
Alignment explanation
Indices: 83327301--83327335 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
83327291 CAATATTTTA
*
83327301 TGAAAAAATATTGATAC
1 TGAAAAAAAATTGATAC
83327318 TGAAATAAAAATTGATAC
1 TGAAA-AAAAATTGATAC
83327336 CATTTTGGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.54, C:0.06, G:0.11, T:0.29
Consensus pattern (17 bp):
TGAAAAAAAATTGATAC
Found at i:83329095 original size:16 final size:17
Alignment explanation
Indices: 83329065--83329097 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
83329055 TTCATAAGTA
83329065 TATATCAATTATTTCAT
1 TATATCAATTATTTCAT
83329082 TATATCAA-TATTTCAT
1 TATATCAATTATTTCAT
83329098 GCACCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (17 bp):
TATATCAATTATTTCAT
Found at i:83329443 original size:46 final size:46
Alignment explanation
Indices: 83329378--83329650 Score: 361
Period size: 46 Copynumber: 6.0 Consensus size: 46
83329368 TTATCTTTGA
* * * *
83329378 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
*
83329424 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * * **
83329470 CACGCTGCCATGGTATCTTTCAACCATGGTCTTATTCGTTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
83329516 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
83329562 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
83329608 CAGGTTG-CATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
83329651 ATCAGAGAGC
Statistics
Matches: 207, Mismatches: 19, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
45 40 0.19
46 167 0.81
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:83332602 original size:13 final size:13
Alignment explanation
Indices: 83332584--83332610 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
83332574 TATTTATTAA
83332584 TTTTCATATTTAC
1 TTTTCATATTTAC
83332597 TTTTCATATTTAC
1 TTTTCATATTTAC
83332610 T
1 T
83332611 CCAAACTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.00, T:0.63
Consensus pattern (13 bp):
TTTTCATATTTAC
Found at i:83335662 original size:53 final size:53
Alignment explanation
Indices: 83335547--83335669 Score: 160
Period size: 53 Copynumber: 2.3 Consensus size: 53
83335537 TTTGAATGAC
* *
83335547 AAAGGGGTGCCGACCATGGGTTGTCCAAAACCCCCCAAAAAAATTAATACAAA
1 AAAGGGGTGTCGACCATAGGTTGTCCAAAACCCCCCAAAAAAATTAATACAAA
* *
83335600 AAAGGGGTGTCGACCATAAGG-TGTCCAAAA-CCCTCAAAAAAATTTTATACAAA
1 AAAGGGGTGTCGACCAT-AGGTTGTCCAAAACCCCCCAAAAAAA-TTAATACAAA
* *
83335653 AAATGGGTGTCGGCCAT
1 AAAGGGGTGTCGACCAT
83335670 CTGTTTCAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
52 11 0.18
53 49 0.79
54 2 0.03
ACGTcount: A:0.40, C:0.21, G:0.20, T:0.19
Consensus pattern (53 bp):
AAAGGGGTGTCGACCATAGGTTGTCCAAAACCCCCCAAAAAAATTAATACAAA
Found at i:83336369 original size:21 final size:21
Alignment explanation
Indices: 83336344--83336383 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
83336334 TAACGAGACA
83336344 CTGATGTGGCAAGTTAACTAG
1 CTGATGTGGCAAGTTAACTAG
*
83336365 CTGATGTGGCCAGTTAACT
1 CTGATGTGGCAAGTTAACT
83336384 TGCCATGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (21 bp):
CTGATGTGGCAAGTTAACTAG
Found at i:83337430 original size:3 final size:3
Alignment explanation
Indices: 83337424--83337452 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
83337414 TTTTACAGTC
83337424 TCT TCT TCT TCT TCT TCT TCT TCT T-T TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
83337453 ATTATTAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:83337629 original size:30 final size:31
Alignment explanation
Indices: 83337576--83337644 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 31
83337566 ATTGTTAATC
*
83337576 AGTGATTGTTTTGTCACTTTTTTATAACGTT-
1 AGTGATTGTTTTGTCACTTTTTTA-AAAGTTG
*
83337607 AGTGATTGTTTTGTTA-TTTTTTAAAAGTTG
1 AGTGATTGTTTTGTCACTTTTTTAAAAGTTG
83337637 AGTGATTG
1 AGTGATTG
83337645 AAATAAAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
29 5 0.14
30 15 0.43
31 15 0.43
ACGTcount: A:0.22, C:0.04, G:0.20, T:0.54
Consensus pattern (31 bp):
AGTGATTGTTTTGTCACTTTTTTAAAAGTTG
Found at i:83337966 original size:18 final size:18
Alignment explanation
Indices: 83337943--83337980 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
83337933 GTAGCATTTA
83337943 TGGCAAAATTAAAACTGG
1 TGGCAAAATTAAAACTGG
83337961 TGGCAAAATTAAAACTGG
1 TGGCAAAATTAAAACTGG
83337979 TG
1 TG
83337981 ATGTGTAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.24
Consensus pattern (18 bp):
TGGCAAAATTAAAACTGG
Found at i:83347898 original size:18 final size:18
Alignment explanation
Indices: 83347863--83347944 Score: 56
Period size: 18 Copynumber: 4.4 Consensus size: 18
83347853 TCTCCCTAAA
* *
83347863 TAAAAAAATATATCTTTTT
1 TAAAAAATTATA-ATTTTT
83347882 TAAAAAATTATAATTTTT
1 TAAAAAATTATAATTTTT
* * * *
83347900 TACAATATTATTAAAATTTA
1 TAAAAAATTA-T-AATTTTT
* **
83347920 TAAAAAATTAAAATTAAT
1 TAAAAAATTATAATTTTT
83347938 TAAAAAA
1 TAAAAAA
83347945 CCATTTAAAA
Statistics
Matches: 48, Mismatches: 13, Indels: 5
0.73 0.20 0.08
Matches are distributed among these distances:
18 23 0.48
19 12 0.25
20 13 0.27
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAAAAATTATAATTTTT
Found at i:83347931 original size:17 final size:18
Alignment explanation
Indices: 83347909--83347944 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
83347899 TTACAATATT
*
83347909 ATTAAAATTTA-TAAAAA
1 ATTAAAATTAATTAAAAA
83347926 ATTAAAATTAATTAAAAA
1 ATTAAAATTAATTAAAAA
83347944 A
1 A
83347945 CCATTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
ATTAAAATTAATTAAAAA
Found at i:83348443 original size:18 final size:19
Alignment explanation
Indices: 83348422--83348457 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
83348412 TTAAAGAAAA
*
83348422 TTAATTTTTA-ATAATTTT
1 TTAAATTTTATATAATTTT
83348440 TTAAATTTTATATAATTT
1 TTAAATTTTATATAATTT
83348458 AGAAATGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TTAAATTTTATATAATTTT
Found at i:83352173 original size:41 final size:41
Alignment explanation
Indices: 83352119--83352217 Score: 126
Period size: 41 Copynumber: 2.4 Consensus size: 41
83352109 CGTGCAATAA
*
83352119 GTAAAGTAATAGCGGCGTTTTTCTCATAAAAGCCGCAAAAG
1 GTAAAGCAATAGCGGCGTTTTTCTCATAAAAGCCGCAAAAG
* * * ** *
83352160 GTAAAGCAGTAGCGGTGTTTTTCTCATAAACGTTGCTAAAG
1 GTAAAGCAATAGCGGCGTTTTTCTCATAAAAGCCGCAAAAG
*
83352201 GTAAAGCAATATCGGCG
1 GTAAAGCAATAGCGGCG
83352218 CAAAATATCT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.26
Consensus pattern (41 bp):
GTAAAGCAATAGCGGCGTTTTTCTCATAAAAGCCGCAAAAG
Found at i:83352343 original size:21 final size:21
Alignment explanation
Indices: 83352317--83352360 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
83352307 CCTAAAATAA
*
83352317 TTTCCCCAAATCCCTTAGTTT
1 TTTCCCCAAATCCCTTAGATT
83352338 TTTCCCCAAATCCCTTAGATT
1 TTTCCCCAAATCCCTTAGATT
83352359 TT
1 TT
83352361 CCTTGAATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.32, G:0.05, T:0.43
Consensus pattern (21 bp):
TTTCCCCAAATCCCTTAGATT
Found at i:83352430 original size:25 final size:25
Alignment explanation
Indices: 83352374--83352460 Score: 86
Period size: 25 Copynumber: 3.5 Consensus size: 25
83352364 TGAATGTCTA
* * *
83352374 CTACATCGCCGTCAATAGTCCTCTC
1 CTACATCGTCGTCGATAGTCCTCTG
* *
83352399 CAACATCGTCGTTGATAGTCCTCTG
1 CTACATCGTCGTCGATAGTCCTCTG
* *
83352424 CTGCATC-ACTGTCGATAGTCCTCTG
1 CTACATCGTC-GTCGATAGTCCTCTG
*
83352449 CTCCATCGTCGT
1 CTACATCGTCGT
83352461 GTACGTTTTT
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
24 1 0.02
25 47 0.96
26 1 0.02
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.31
Consensus pattern (25 bp):
CTACATCGTCGTCGATAGTCCTCTG
Found at i:83354406 original size:39 final size:39
Alignment explanation
Indices: 83354362--83354504 Score: 214
Period size: 39 Copynumber: 3.7 Consensus size: 39
83354352 TCATATTTAA
* * *
83354362 TCAGTAACAATCAGTTATTCAGTACAGTAATTTAGTCAT
1 TCAGTAACTATCAATTATTCAGTACAGTAATTTAGTTAT
* * *
83354401 TCAGTAACTATCAAATATTCAGTGCAGTAGTTTAGTTAT
1 TCAGTAACTATCAATTATTCAGTACAGTAATTTAGTTAT
* *
83354440 TCAATAACTATCAATTATTCAATACAGTAATTTAGTTAT
1 TCAGTAACTATCAATTATTCAGTACAGTAATTTAGTTAT
83354479 TCAGTAACTATCAATTATTCAGTACA
1 TCAGTAACTATCAATTATTCAGTACA
83354505 ATAGTTTACC
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 91 1.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (39 bp):
TCAGTAACTATCAATTATTCAGTACAGTAATTTAGTTAT
Found at i:83354459 original size:18 final size:18
Alignment explanation
Indices: 83354436--83354499 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
83354426 AGTAGTTTAG
83354436 TTATTCAATAACTATCAA
1 TTATTCAATAACTATCAA
* * *
83354454 TTATTCAATACAGTAATTTAG
1 TTATTCAATA-ACT-A-TCAA
*
83354475 TTATTCAGTAACTATCAA
1 TTATTCAATAACTATCAA
83354493 TTATTCA
1 TTATTCA
83354500 GTACAATAGT
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
18 19 0.53
19 3 0.08
20 3 0.08
21 11 0.31
ACGTcount: A:0.39, C:0.14, G:0.05, T:0.42
Consensus pattern (18 bp):
TTATTCAATAACTATCAA
Found at i:83354500 original size:18 final size:18
Alignment explanation
Indices: 83354399--83354502 Score: 64
Period size: 18 Copynumber: 5.4 Consensus size: 18
83354389 TAATTTAGTC
*
83354399 ATTCAGTAACTATCAAAT
1 ATTCAGTAACTATCAATT
* * * *
83354417 ATTCAGTGCAGTAGTTTAGTT
1 ATTCAGT-AACTA--TCAATT
*
83354438 ATTCAATAACTATCAATT
1 ATTCAGTAACTATCAATT
* * * *
83354456 ATTCAATACAGTAATTTAGTT
1 ATTCAGTA-ACT-A-TCAATT
83354477 ATTCAGTAACTATCAATT
1 ATTCAGTAACTATCAATT
83354495 ATTCAGTA
1 ATTCAGTA
83354503 CAATAGTTTA
Statistics
Matches: 63, Mismatches: 17, Indels: 12
0.68 0.18 0.13
Matches are distributed among these distances:
18 31 0.49
19 6 0.10
20 6 0.10
21 20 0.32
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.39
Consensus pattern (18 bp):
ATTCAGTAACTATCAATT
Found at i:83355719 original size:30 final size:28
Alignment explanation
Indices: 83355666--83355727 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 28
83355656 ATTATTTAAT
83355666 TAATAAATATCTTTTACTTAATAATAAA
1 TAATAAATATCTTTTACTTAATAATAAA
*
83355694 TAATAAATATCTATTTACTTTAATAATAAG
1 TAATAAATATCT-TTTAC-TTAATAATAAA
83355724 TAAT
1 TAAT
83355728 TTAAATCCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 12 0.39
29 5 0.16
30 14 0.45
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (28 bp):
TAATAAATATCTTTTACTTAATAATAAA
Found at i:83358075 original size:14 final size:13
Alignment explanation
Indices: 83358049--83358090 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
83358039 AAACCCTAAA
*
83358049 TTTTCTCCTTTCT
1 TTTTCTTCTTTCT
83358062 TTTTCTTTCTTTCT
1 TTTTC-TTCTTTCT
83358076 TTTTCTTCTTTCT
1 TTTTCTTCTTTCT
83358089 TT
1 TT
83358091 CCCCTATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 15 0.56
14 12 0.44
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTCTTCTTTCT
Found at i:83358325 original size:15 final size:15
Alignment explanation
Indices: 83358305--83358333 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
83358295 ATACTTTAAT
83358305 TATAATATAATATAG
1 TATAATATAATATAG
83358320 TATAATATAATATA
1 TATAATATAATATA
83358334 CTAATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.41
Consensus pattern (15 bp):
TATAATATAATATAG
Found at i:83376964 original size:28 final size:29
Alignment explanation
Indices: 83376933--83376996 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
83376923 AACTACAAAA
*
83376933 TTAATTA-AAATTCATAATGTTCATATT-T
1 TTAATTATAAATTAATAAT-TTCATATTAT
* *
83376961 TTAA-TATAAATTAATTATTTTATATTAT
1 TTAATTATAAATTAATAATTTCATATTAT
83376989 TTAATTAT
1 TTAATTAT
83376997 TCTTTTGACA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 9 0.30
28 18 0.60
29 3 0.10
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.55
Consensus pattern (29 bp):
TTAATTATAAATTAATAATTTCATATTAT
Found at i:83377365 original size:86 final size:86
Alignment explanation
Indices: 83377220--83377391 Score: 335
Period size: 86 Copynumber: 2.0 Consensus size: 86
83377210 GAAGACGGTT
83377220 GGAGAGTCAGCATACTATCAAATAGACTAGCTTTGGTATAAAGACATTTCTAAATTGTTCAATGA
1 GGAGAGTCAGCATACTATCAAATAGACTAGCTTTGGTATAAAGACATTTCTAAATTGTTCAATGA
83377285 CATGTATAGGTCTTTTAAGTA
66 CATGTATAGGTCTTTTAAGTA
83377306 GGAGAGTCAGCATACTATCAAATAGACTAGCTTTGGTATAAAGACATTTCTAAATTGTTCAATGA
1 GGAGAGTCAGCATACTATCAAATAGACTAGCTTTGGTATAAAGACATTTCTAAATTGTTCAATGA
*
83377371 CATGTATAGGTCTTTTGAGTA
66 CATGTATAGGTCTTTTAAGTA
83377392 TTTTGTTATA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (86 bp):
GGAGAGTCAGCATACTATCAAATAGACTAGCTTTGGTATAAAGACATTTCTAAATTGTTCAATGA
CATGTATAGGTCTTTTAAGTA
Found at i:83377856 original size:19 final size:19
Alignment explanation
Indices: 83377832--83377869 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
83377822 TACGCGGGTG
83377832 TTAGATAATTTGTCGTACA
1 TTAGATAATTTGTCGTACA
83377851 TTAGATAATTTGTCGTACA
1 TTAGATAATTTGTCGTACA
83377870 CACCTGAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.42
Consensus pattern (19 bp):
TTAGATAATTTGTCGTACA
Found at i:83390298 original size:21 final size:22
Alignment explanation
Indices: 83390258--83390300 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
83390248 AATATTTAAA
*
83390258 AAATTAATTAAATATATTTTTT
1 AAATAAATTAAATATATTTTTT
*
83390280 AAATAAATTGAAT-TATTTTTT
1 AAATAAATTAAATATATTTTTT
83390301 TGAAAAGTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
AAATAAATTAAATATATTTTTT
Found at i:83393704 original size:28 final size:28
Alignment explanation
Indices: 83393663--83393728 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
83393653 ATACGGCCTA
* *
83393663 GGACACGGGTGTGTCGTGGTCATGTGAG
1 GGACACGGGCGTGTCATGGTCATGTGAG
83393691 GGACACGGGCGTGTCATGGTCATGTGAG
1 GGACACGGGCGTGTCATGGTCATGTGAG
83393719 GGACACGGGC
1 GGACACGGGC
83393729 CATAGACAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.17, C:0.18, G:0.45, T:0.20
Consensus pattern (28 bp):
GGACACGGGCGTGTCATGGTCATGTGAG
Found at i:83395628 original size:40 final size:40
Alignment explanation
Indices: 83395573--83395770 Score: 315
Period size: 40 Copynumber: 5.0 Consensus size: 40
83395563 GAAAAAAAAA
* *
83395573 TATAAACGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
83395613 TATAACTGGGTTAAGTCCCGAAGGCATTCGTGCAGCTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
83395653 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
83395693 TATAACCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
83395733 TATAACCGGGTTAAGTCCCGAAAGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
83395771 GTTACATCCG
Statistics
Matches: 145, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:83403609 original size:40 final size:40
Alignment explanation
Indices: 83403549--83403706 Score: 262
Period size: 40 Copynumber: 4.0 Consensus size: 40
83403539 GAAAAAAAAA
* *
83403549 TATAGCCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
**
83403589 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGTAGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
83403629 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
83403669 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
83403707 GTTACATCCA
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 110 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:83403730 original size:80 final size:80
Alignment explanation
Indices: 83403564--83403732 Score: 223
Period size: 80 Copynumber: 2.1 Consensus size: 80
83403554 CCGGGTTAAG
83403564 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGTAGGTTAT
1 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGTAGGTTAT
* ** ** *
83403629 TATAACCGGGTTAAG
66 TACAACCAAGCCAAA
* * *
83403644 TCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTTGTGCT-GGTTG
1 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTG-TAGGTTA
*
83403708 TTACATCCAAGCCAAA
65 TTACAACCAAGCCAAA
*
83403724 TTCCGAAGG
1 TCCCGAAGG
83403733 TATTTATGTT
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 76 0.99
81 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGTGTAGGTTAT
TACAACCAAGCCAAA
Found at i:83408808 original size:20 final size:20
Alignment explanation
Indices: 83408783--83408846 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
83408773 GTGGTCGAGG
83408783 ATGTACAATGACTAAAGAAA
1 ATGTACAATGACTAAAGAAA
* * * **
83408803 ATGTACTAGTG-GT--CGAGG
1 ATGTAC-AATGACTAAAGAAA
83408821 ATGTACAATGACTAAAGAAA
1 ATGTACAATGACTAAAGAAA
83408841 ATGTAC
1 ATGTAC
83408847 TAGTGGTCGA
Statistics
Matches: 30, Mismatches: 10, Indels: 8
0.62 0.21 0.17
Matches are distributed among these distances:
17 3 0.10
18 9 0.30
20 15 0.50
21 3 0.10
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.23
Consensus pattern (20 bp):
ATGTACAATGACTAAAGAAA
Found at i:83408823 original size:38 final size:38
Alignment explanation
Indices: 83408772--83408857 Score: 172
Period size: 38 Copynumber: 2.3 Consensus size: 38
83408762 AGAGGCACAC
83408772 AGTGGTCGAGGATGTACAATGACTAAAGAAAATGTACT
1 AGTGGTCGAGGATGTACAATGACTAAAGAAAATGTACT
83408810 AGTGGTCGAGGATGTACAATGACTAAAGAAAATGTACT
1 AGTGGTCGAGGATGTACAATGACTAAAGAAAATGTACT
83408848 AGTGGTCGAG
1 AGTGGTCGAG
83408858 AATGAAAAGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.37, C:0.10, G:0.29, T:0.23
Consensus pattern (38 bp):
AGTGGTCGAGGATGTACAATGACTAAAGAAAATGTACT
Found at i:83410091 original size:24 final size:24
Alignment explanation
Indices: 83410064--83410111 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
83410054 AAGTGGGAGA
83410064 ATTGCAGCAGCTCGATTTTGGGCT
1 ATTGCAGCAGCTCGATTTTGGGCT
83410088 ATTGCAGCAGCTCGATTTTGGGCT
1 ATTGCAGCAGCTCGATTTTGGGCT
83410112 TAGTTAGGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.21, G:0.29, T:0.33
Consensus pattern (24 bp):
ATTGCAGCAGCTCGATTTTGGGCT
Found at i:83411589 original size:49 final size:48
Alignment explanation
Indices: 83411286--83411648 Score: 206
Period size: 46 Copynumber: 7.7 Consensus size: 48
83411276 TTTGTGTGCT
* * * *
83411286 AGTGTAAGA-CATGTCTGGGACAT-GCAACGGCCAC-AT-TATAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATCGAT--GAGCC
* * * * *
83411332 AGTGTAAAACCATGTCTGGGACATGGCATCGACATTGA--GATGAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATCGATG--AGCC
* * *
83411380 AGTGTATGA-CATGTCTGGGACAT-GTATCGACCTCGA--GATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATCGATG--AGCC
* * * * *
83411426 AGTGTAAGA-CATGTTTGGGACAT-GTATCGG-CTAC-A-AGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGATCGATGAGCC
* * * * *
83411470 AGTATAAGACCATGCCTGGGACATGGCATCGGCAC-GGATATG-TGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAT-CGAT--GAGCC
* * **
83411520 AGTGTAAGACCATGTTTGGGACATGGCGTCGGCCTCGATTTCGAT-ATTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA--TCGATGAGCC
* * *
83411569 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATCGATGAGCC
*
83411616 AGTGTAAGACCATGTCTGGGACATAGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
83411649 ATTATACCCT
Statistics
Matches: 249, Mismatches: 46, Indels: 42
0.74 0.14 0.12
Matches are distributed among these distances:
44 10 0.04
45 15 0.06
46 69 0.28
47 60 0.24
48 27 0.11
49 32 0.13
50 33 0.13
51 1 0.00
52 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATCGATGAGCC
Found at i:83411632 original size:47 final size:45
Alignment explanation
Indices: 83411327--83411646 Score: 209
Period size: 46 Copynumber: 6.8 Consensus size: 45
83411317 CACATTATAA
* * *
83411327 GAGCTAGTGTAAAACCATGTCTGGGACATGGCATCGACATTGAGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TCGAGAT
* * *
83411373 GAAAGCTAGTGTATGA-CATGTCTGGGACAT-GTATCGACCTCGAGAT
1 G--AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTCGAGAT
* * * *
83411419 GTAAGCCAGTGTAAGA-CATGTTTGGGACAT-GTATCGGCTACAAGAT
1 G--AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGAT
* * * * * * *
83411465 GTGTCAGTATAAGACCATGCCTGGGACATGGCATCGGCACGGATATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTC-GAGA--T
* * * *
83411513 GAGAGCTAGTGTAAGACCATGTTTGGGACATGGCGTCGGCCTCGATTTCGAT
1 --GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGA----GAT
** *
83411565 -ATTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGA--GAT
*
83411611 GAGCCAGTGTAAGACCATGTCTGGGACATAGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
83411647 GCATTATACC
Statistics
Matches: 217, Mismatches: 40, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
44 10 0.05
45 15 0.07
46 64 0.29
47 47 0.22
48 17 0.08
49 29 0.13
50 30 0.14
51 3 0.01
52 1 0.00
54 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (45 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGAT
Found at i:83415005 original size:22 final size:19
Alignment explanation
Indices: 83414979--83415026 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 19
83414969 TATGGGAGTA
83414979 ATTTTATTTTATATATCTATGT
1 ATTTTATTTTAT-T-T-TATGT
83415001 ATTTT-TTTTATTTTATGT
1 ATTTTATTTTATTTTATGT
83415019 A-TTTATTT
1 ATTTTATTT
83415027 ATCTTATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.12
18 9 0.36
19 1 0.04
20 1 0.04
21 6 0.24
22 5 0.20
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (19 bp):
ATTTTATTTTATTTTATGT
Found at i:83415353 original size:19 final size:20
Alignment explanation
Indices: 83415331--83415372 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
83415321 GTGCCCTCTC
83415331 CACA-TGTGTGTGGCCTTCA
1 CACAGTGTGTGTGGCCTTCA
83415350 CACAGGTGTGTGTGGCCTTCA
1 CACA-GTGTGTGTGGCCTTCA
83415371 CA
1 CA
83415373 TGGGCGTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 4 0.19
21 17 0.81
ACGTcount: A:0.17, C:0.26, G:0.29, T:0.29
Consensus pattern (20 bp):
CACAGTGTGTGTGGCCTTCA
Found at i:83415381 original size:19 final size:19
Alignment explanation
Indices: 83415309--83415381 Score: 60
Period size: 21 Copynumber: 3.7 Consensus size: 19
83415299 AATTAGTTGC
*
83415309 TCACATGGGCGTGTGCCCT
1 TCACATGGGCGTGTGGCCT
*
83415328 CTCCACAT--GTGTGTGGCCT
1 -T-CACATGGGCGTGTGGCCT
* *
83415347 TCACACAGGTGTGTGTGGCCT
1 TCACA-TGG-GCGTGTGGCCT
83415368 TCACATGGGCGTGT
1 TCACATGGGCGTGT
83415382 AGACCCCCAC
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
17 4 0.09
18 1 0.02
19 14 0.33
20 3 0.07
21 21 0.49
ACGTcount: A:0.12, C:0.27, G:0.32, T:0.29
Consensus pattern (19 bp):
TCACATGGGCGTGTGGCCT
Found at i:83415381 original size:21 final size:21
Alignment explanation
Indices: 83415336--83415381 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
83415326 CTCTCCACAT
*
83415336 GTGTGTGGCCTTCACACAGGT
1 GTGTGTGGCCTTCACACAGGC
**
83415357 GTGTGTGGCCTTCACATGGGC
1 GTGTGTGGCCTTCACACAGGC
83415378 GTGT
1 GTGT
83415382 AGACCCCCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.11, C:0.22, G:0.37, T:0.30
Consensus pattern (21 bp):
GTGTGTGGCCTTCACACAGGC
Found at i:83423045 original size:25 final size:25
Alignment explanation
Indices: 83423017--83423088 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
83423007 CAACTTATAC
*
83423017 CTTCTCAACTTCTTCAATTTCTATT
1 CTTCTAAACTTCTTCAATTTCTATT
*
83423042 CTTCTGAACTTCTTCAATTTCTATT
1 CTTCTAAACTTCTTCAATTTCTATT
*
83423067 CTTCTAAACTTCTCCAATTTCT
1 CTTCTAAACTTCTTCAATTTCT
83423089 CTTGCTGTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.21, C:0.28, G:0.01, T:0.50
Consensus pattern (25 bp):
CTTCTAAACTTCTTCAATTTCTATT
Found at i:83434413 original size:4 final size:4
Alignment explanation
Indices: 83434387--83434493 Score: 56
Period size: 4 Copynumber: 24.8 Consensus size: 4
83434377 TTAAAAAAAT
* * *
83434387 TAAA TGAA T-AA TAAA TGAA TAAA TAAAA CAAA TATACA TAACA TTAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA T-AAA TAAA TA-A-A TAA-A -TAAA
* * *
83434435 TTCAAA TAAA TGAA CAAA TAAA TAAA CAAA TATAA TAGATA TAAA T-AA
1 -T-AAA TAAA TAAA TAAA TAAA TAAA TAAA TA-AA TA-A-A TAAA TAAA
83434483 TAAA TAAA TAA
1 TAAA TAAA TAA
83434494 GTATTAGGTA
Statistics
Matches: 82, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
3 6 0.07
4 47 0.57
5 17 0.21
6 12 0.15
ACGTcount: A:0.65, C:0.06, G:0.04, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:83441402 original size:25 final size:25
Alignment explanation
Indices: 83441373--83441421 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
83441363 ATAATGATTT
83441373 ATGAACTAAATATTTTACAAATGAG
1 ATGAACTAAATATTTTACAAATGAG
83441398 ATGAACTAAATATTTTACAAATGA
1 ATGAACTAAATATTTTACAAATGA
83441422 AGTTTTGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.49, C:0.08, G:0.10, T:0.33
Consensus pattern (25 bp):
ATGAACTAAATATTTTACAAATGAG
Found at i:83441976 original size:44 final size:43
Alignment explanation
Indices: 83441925--83442077 Score: 137
Period size: 44 Copynumber: 3.5 Consensus size: 43
83441915 CGAGGATGAT
83441925 AGATTTGGCGTCTCTGTATTAGATAGGGAGCAGATCAAAGAAGA
1 AGATTTGGCGTCTCTGTATT-GATAGGGAGCAGATCAAAGAAGA
* * * *
83441969 AGATTTGGCGTCTCTGTGTTGAT-GGATAGCAGATCGAAGAAAGC
1 AGATTTGGCGTCTCTGTATTGATAGG-GAGCAGATCAAAG-AAGA
* * * ** * *
83442013 ACATCTAGTATCTCTGTATTGACAGAGAGCAGATCAAAGATAGCA
1 AGATTTGGCGTCTCTGTATTGATAGGGAGCAGATCAAAGA-AG-A
* *
83442058 TGATTTGGTGTCTCTGTATT
1 AGATTTGGCGTCTCTGTATT
83442078 AGGCGAGATG
Statistics
Matches: 84, Mismatches: 20, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
42 2 0.02
43 15 0.18
44 51 0.61
45 16 0.19
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (43 bp):
AGATTTGGCGTCTCTGTATTGATAGGGAGCAGATCAAAGAAGA
Found at i:83443561 original size:11 final size:11
Alignment explanation
Indices: 83443545--83443589 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
83443535 GTAAATAGTA
83443545 TATATATTATT
1 TATATATTATT
*
83443556 TATATATTATC
1 TATATATTATT
*
83443567 TATAATATTGTT
1 TAT-ATATTATT
83443579 TATATTATTAT
1 TATA-TATTAT
83443590 ATATTTTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
11 14 0.50
12 14 0.50
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (11 bp):
TATATATTATT
Found at i:83443574 original size:23 final size:25
Alignment explanation
Indices: 83443543--83443589 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 25
83443533 ATGTAAATAG
83443543 TATATATATTATTTATA-TATTATC
1 TATATATATTATTTATATTATTATC
*
83443567 TATA-ATATTGTTTATATTATTAT
1 TATATATATTATTTATATTATTAT
83443590 ATATTTTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (25 bp):
TATATATATTATTTATATTATTATC
Found at i:83443584 original size:21 final size:21
Alignment explanation
Indices: 83443543--83443636 Score: 70
Period size: 21 Copynumber: 4.3 Consensus size: 21
83443533 ATGTAAATAG
*
83443543 TATATATATTATTTATA-TAT
1 TATATATATTGTTTATATTAT
83443563 TATCTATAATATTGTTTATATTAT
1 TA--TAT-ATATTGTTTATATTAT
*
83443587 TATATATTTTGTTTATAAATT-T
1 TATATATATTGTTTAT--ATTAT
*
83443609 TAT-TATA-TGTTATATATTTAC
1 TATATATATTGTT-TATA-TTAT
83443630 TATATAT
1 TATATAT
83443637 TATTCCTTAC
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
19 1 0.02
20 8 0.13
21 19 0.32
22 13 0.22
23 14 0.23
24 5 0.08
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (21 bp):
TATATATATTGTTTATATTAT
Found at i:83443639 original size:28 final size:25
Alignment explanation
Indices: 83443579--83443640 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
83443569 TAATATTGTT
*
83443579 TATATTATTATATATTTTGTTTATA
1 TATATTATTATATATTTTATTTATA
* * *
83443604 AATTTTATTATATGTTATATATTTACTA
1 TATATTATTATATATT-T-TATTTA-TA
83443632 TATATTATT
1 TATATTATT
83443641 CCTTACATTA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
25 13 0.46
26 1 0.04
27 5 0.18
28 9 0.32
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (25 bp):
TATATTATTATATATTTTATTTATA
Found at i:83443872 original size:15 final size:17
Alignment explanation
Indices: 83443852--83443887 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
83443842 AATTTGTTTA
83443852 TTTA-TTTTTGTATT-T
1 TTTATTTTTTGTATTGT
83443867 TTTATTTTTTGTATTGT
1 TTTATTTTTTGTATTGT
83443884 TTTA
1 TTTA
83443888 GTATGTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.21
16 10 0.53
17 5 0.26
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (17 bp):
TTTATTTTTTGTATTGT
Found at i:83443886 original size:19 final size:18
Alignment explanation
Indices: 83443845--83443886 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
83443835 CGTTCATAAT
83443845 TTGTTTATTTATTTTTGTA
1 TTGTTT-TTTATTTTTGTA
*
83443864 TT-TTTTAT-TTTTTGTA
1 TTGTTTTTTATTTTTGTA
83443880 TTGTTTT
1 TTGTTTT
83443887 AGTATGTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 10 0.48
17 6 0.29
18 3 0.14
19 2 0.10
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.79
Consensus pattern (18 bp):
TTGTTTTTTATTTTTGTA
Found at i:83445729 original size:17 final size:17
Alignment explanation
Indices: 83445707--83445743 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
83445697 ATATGACATT
83445707 ATATAAATTGACAAAAA
1 ATATAAATTGACAAAAA
83445724 ATATAAATTGACAAAAA
1 ATATAAATTGACAAAAA
83445741 ATA
1 ATA
83445744 GACTTGTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.24
Consensus pattern (17 bp):
ATATAAATTGACAAAAA
Found at i:83446788 original size:21 final size:21
Alignment explanation
Indices: 83446745--83446788 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
83446735 TACACTATAT
* ** *
83446745 TTTATATTTTTTTACTTAGAG
1 TTTAAATTTTTTTACAAAAAG
83446766 TTTAAATTTTTTTACAAAAAG
1 TTTAAATTTTTTTACAAAAAG
83446787 TT
1 TT
83446789 AACATTTGTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.57
Consensus pattern (21 bp):
TTTAAATTTTTTTACAAAAAG
Found at i:83446882 original size:14 final size:15
Alignment explanation
Indices: 83446865--83446893 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83446855 GAGTATGGTA
83446865 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
83446879 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
83446894 TACTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:83451805 original size:11 final size:11
Alignment explanation
Indices: 83451781--83451820 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
83451771 GAAATTTTAA
*
83451781 AAAATAAATTT
1 AAAATTAATTT
*
83451792 AAAATTAATAT
1 AAAATTAATTT
83451803 AAAATT-ATTT
1 AAAATTAATTT
83451813 AAAATTAA
1 AAAATTAA
83451821 GTCCAGAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 9 0.36
11 16 0.64
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAATTAATTT
Found at i:83458302 original size:10 final size:10
Alignment explanation
Indices: 83458275--83458345 Score: 65
Period size: 10 Copynumber: 6.9 Consensus size: 10
83458265 TTAAATTCTA
83458275 AAAGATAAAT
1 AAAGATAAAT
*
83458285 ACAA-ATAATT
1 A-AAGATAAAT
*
83458295 AAAGATAATT
1 AAAGATAAAT
83458305 AAAGATAAAT
1 AAAGATAAAT
83458315 AAAGATAAA-
1 AAAGATAAAT
*
83458324 AGCTAGGATAAAT
1 A---AAGATAAAT
83458337 AAAGATAAA
1 AAAGATAAA
83458346 AGCTAAAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
9 3 0.06
10 38 0.75
11 2 0.04
12 7 0.14
13 1 0.02
ACGTcount: A:0.65, C:0.03, G:0.11, T:0.21
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:83458336 original size:22 final size:22
Alignment explanation
Indices: 83458308--83458350 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
83458298 GATAATTAAA
83458308 GATAAATAAAGATAAAAGCTAG
1 GATAAATAAAGATAAAAGCTAG
83458330 GATAAATAAAGATAAAAGCTA
1 GATAAATAAAGATAAAAGCTA
83458351 AAATTAAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.60, C:0.05, G:0.16, T:0.19
Consensus pattern (22 bp):
GATAAATAAAGATAAAAGCTAG
Found at i:83458396 original size:14 final size:13
Alignment explanation
Indices: 83458360--83458397 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
83458350 AAAATTAAAT
83458360 CTAAATAATTATC
1 CTAAATAATTATC
*
83458373 CTTAATAATTATC
1 CTAAATAATTATC
83458386 CTAATATAATTA
1 CTAA-ATAATTA
83458398 GAATTTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:83460326 original size:8 final size:8
Alignment explanation
Indices: 83460310--83460360 Score: 68
Period size: 8 Copynumber: 6.5 Consensus size: 8
83460300 ATCCAAACAA
*
83460310 AATAAAAT
1 AATATAAT
83460318 AATATAAT
1 AATATAAT
83460326 AATATAAT
1 AATATAAT
83460334 AATATAAT
1 AATATAAT
83460342 AA-ATAAT
1 AATATAAT
* *
83460349 AAAATAAA
1 AATATAAT
83460357 AATA
1 AATA
83460361 AAAATTGAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
7 7 0.18
8 32 0.82
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (8 bp):
AATATAAT
Found at i:83460327 original size:3 final size:3
Alignment explanation
Indices: 83460310--83460361 Score: 51
Period size: 3 Copynumber: 18.7 Consensus size: 3
83460300 ATCCAAACAA
83460310 AAT AA- AAT AAT -AT AAT AAT -AT AAT AAT -AT AAT AAAT AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
*
83460351 AAT AAA AAT AA
1 AAT AAT AAT AA
83460362 AAATTGAGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
2 10 0.24
3 28 0.68
4 3 0.07
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Done.