Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 257 of 325
Found at i:83714414 original size:12 final size:13
Alignment explanation
Indices: 83714368--83714417 Score: 50
Period size: 12 Copynumber: 3.9 Consensus size: 13
83714358 CAAGTAAAAC
83714368 ATAATAAATATTAT
1 ATAATAAATA-TAT
83714382 ATAATAAA-ATAT
1 ATAATAAATATAT
***
83714394 ATGGGAAATA-AT
1 ATAATAAATATAT
83714406 ATAATAAATATA
1 ATAATAAATATA
83714418 GCATATAATA
Statistics
Matches: 28, Mismatches: 6, Indels: 5
0.72 0.15 0.13
Matches are distributed among these distances:
12 17 0.61
13 3 0.11
14 8 0.29
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (13 bp):
ATAATAAATATAT
Found at i:83714494 original size:20 final size:20
Alignment explanation
Indices: 83714469--83714517 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
83714459 AAATAAATGT
83714469 ATAATATATGTA-AAAATATA
1 ATAATATATGTATAAAA-ATA
*
83714489 ATAATATATATATAAAAATA
1 ATAATATATGTATAAAAATA
83714509 ATAAT-TATG
1 ATAATATATG
83714518 AGAGAATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 3 0.12
20 19 0.73
21 4 0.15
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (20 bp):
ATAATATATGTATAAAAATA
Found at i:83714630 original size:19 final size:19
Alignment explanation
Indices: 83714594--83714643 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
83714584 GAAGTAAAAT
*
83714594 TAAAATAAA-ACA-AATAA
1 TAAAATAAATATAGAATAA
*
83714611 TAAAATATATATAGAATAA
1 TAAAATAAATATAGAATAA
83714630 TAAAATAAATATAG
1 TAAAATAAATATAG
83714644 GACTAAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 8 0.29
18 2 0.07
19 18 0.64
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (19 bp):
TAAAATAAATATAGAATAA
Found at i:83715978 original size:7 final size:8
Alignment explanation
Indices: 83715964--83715995 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
83715954 ATGTTATTCA
*
83715964 TAAAAAAT
1 TAAAAATT
83715972 TAAAAATT
1 TAAAAATT
83715980 TAAAAATT
1 TAAAAATT
83715988 TAAAAATT
1 TAAAAATT
83715996 GATACAGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (8 bp):
TAAAAATT
Found at i:83716347 original size:20 final size:20
Alignment explanation
Indices: 83716305--83716348 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
83716295 CCATTTAATA
*
83716305 TAAAAAATTCTAAAAATTTT
1 TAAAAAATTCTAAAAATTCT
*
83716325 TAAAAAATT-TCAAAATATCT
1 TAAAAAATTCTAAAAAT-TCT
83716345 TAAA
1 TAAA
83716349 TTTTCTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (20 bp):
TAAAAAATTCTAAAAATTCT
Found at i:83717709 original size:27 final size:27
Alignment explanation
Indices: 83717655--83717713 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
83717645 GGTGTAATTA
** *
83717655 ATCAAAAGTTATATCTTTTGGTTATTG
1 ATCAAAAGTTATATCACTTGATTATTG
* *
83717682 ATCAAGAGTTATATCACTTGATTTTTG
1 ATCAAAAGTTATATCACTTGATTATTG
83717709 A-CAAA
1 ATCAAA
83717714 GACACCTATT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (27 bp):
ATCAAAAGTTATATCACTTGATTATTG
Found at i:83722621 original size:27 final size:27
Alignment explanation
Indices: 83722573--83722731 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
83722563 GCGAGGCTGC
* *
83722573 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
* *
83722600 CAGATATTATGGTAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
83722626 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
83722653 CAGATAATTGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
83722680 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
83722707 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
83722732 GACGCTTCCT
Statistics
Matches: 115, Mismatches: 9, Indels: 16
0.82 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 100 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:83722673 original size:54 final size:54
Alignment explanation
Indices: 83722591--83722731 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
83722581 GTGACGAAGT
* * *
83722591 CACCAGATACAGAT-ATTATGGTAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
83722645 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
83722699 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
83722732 GACGCTTCCT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 78 0.94
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:83724391 original size:26 final size:26
Alignment explanation
Indices: 83724352--83724433 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
83724342 TGAAATTCCA
83724352 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
83724378 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
83724404 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
83724430 ATCA
1 ATCA
83724434 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:83727813 original size:6 final size:6
Alignment explanation
Indices: 83727802--83727842 Score: 64
Period size: 6 Copynumber: 6.5 Consensus size: 6
83727792 ATAATTTAAT
83727802 AAATAA AAATAA AAATATA AAACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATA-A AAA-TAA AAATAA AAATAA AAA
83727843 ACATATAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 23 0.70
7 8 0.24
8 2 0.06
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:83727830 original size:20 final size:20
Alignment explanation
Indices: 83727805--83727844 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
83727795 ATTTAATAAA
*
83727805 TAAAAATAAAAATATAAAAC
1 TAAAAATAAAAATAAAAAAC
83727825 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
83727845 ATATAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:83727876 original size:9 final size:9
Alignment explanation
Indices: 83727862--83727920 Score: 66
Period size: 9 Copynumber: 6.6 Consensus size: 9
83727852 TTTATACAAA
83727862 TAATTCGGT
1 TAATTCGGT
*
83727871 TAATTCGGC
1 TAATTCGGT
* *
83727880 TAATTTGGG
1 TAATTCGGT
83727889 TAATTCAGG-
1 TAATTC-GGT
*
83727898 TAACTCGGT
1 TAATTCGGT
83727907 TAATTCGGT
1 TAATTCGGT
83727916 TAATT
1 TAATT
83727921 TTATACTTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
8 2 0.05
9 38 0.90
10 2 0.05
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (9 bp):
TAATTCGGT
Found at i:83729672 original size:116 final size:116
Alignment explanation
Indices: 83729549--83729780 Score: 446
Period size: 116 Copynumber: 2.0 Consensus size: 116
83729539 CTTATATCTT
83729549 CTATTTTTCTTTTTATATCTTTTATAAGTAGTAGGACATATTGGTTTACATCCTAATTCCCATTC
1 CTATTTTTCTTTTTATATCTTTTATAAGTAGTAGGACATATTGGTTTACATCCTAATTCCCATTC
83729614 ATTTTCTAAATTTTTTGTATAATGTTTAGTACTTAATTTATGCTTAACTTG
66 ATTTTCTAAATTTTTTGTATAATGTTTAGTACTTAATTTATGCTTAACTTG
*
83729665 CTATTTTTCTTTTTATATCTTTTATAAGTAGTAGGACGTATTGGTTTACATCCTAATTCCCATTC
1 CTATTTTTCTTTTTATATCTTTTATAAGTAGTAGGACATATTGGTTTACATCCTAATTCCCATTC
*
83729730 ATTTTCTAAATTTTTTTTATAATGTTTAGTACTTAATTTATGCTTAACTTG
66 ATTTTCTAAATTTTTTGTATAATGTTTAGTACTTAATTTATGCTTAACTTG
83729781 TTTAGAAGCT
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 114 1.00
ACGTcount: A:0.25, C:0.13, G:0.09, T:0.52
Consensus pattern (116 bp):
CTATTTTTCTTTTTATATCTTTTATAAGTAGTAGGACATATTGGTTTACATCCTAATTCCCATTC
ATTTTCTAAATTTTTTGTATAATGTTTAGTACTTAATTTATGCTTAACTTG
Found at i:83731249 original size:708 final size:708
Alignment explanation
Indices: 83730250--83731668 Score: 2811
Period size: 708 Copynumber: 2.0 Consensus size: 708
83730240 AGAACATCTC
83730250 TTTGAAATGTTCCAACAAAATAATTTAAAAAAATTTCTTTTGACCGCATATTGTTGTTGTTTACA
1 TTTGAAATGTTCCAACAAAATAATTTAAAAAAATTTCTTTTGACCGCATATTGTTGTTGTTTACA
83730315 ACAATAGTCATAGATTATGCCCAATCATCTATGATTTCTTCATAGTCAGTTATAAGAATATTAGT
66 ACAATAGTCATAGATTATGCCCAATCATCTATGATTTCTTCATAGTCAGTTATAAGAATATTAGT
83730380 TAAGTCTAAATATATTCCTCCTTGAGCAACATTTCTTTTATTTAAATCATCTATTCTATGTGGGA
131 TAAGTCTAAATATATTCCTCCTTGAGCAACATTTCTTTTATTTAAATCATCTATTCTATGTGGGA
83730445 CAAGTTGACTAGATGTTTCTCCTGAATTTTTAGATTTTATTTCATTAGTAGCTATATTTTCGGCT
196 CAAGTTGACTAGATGTTTCTCCTGAATTTTTAGATTTTATTTCATTAGTAGCTATATTTTCGGCT
83730510 TGGTTACCAAAAATTCTAGCTGTATTTTCAACTTTTTCATAATCTTTATTAAAAGATCTTAGATA
261 TGGTTACCAAAAATTCTAGCTGTATTTTCAACTTTTTCATAATCTTTATTAAAAGATCTTAGATA
83730575 ATCATCATTTTGAATATCTGACTCTATTTTTCTTTTTCCATAAAGATCTGTTTGATTAGTATTCA
326 ATCATCATTTTGAATATCTGACTCTATTTTTCTTTTTCCATAAAGATCTGTTTGATTAGTATTCA
83730640 TAGGTTCTGGTATTTCTATATTTTCTTCCTCATCTGTTGAAGTGTTTTCTTTATCAGATTTATAG
391 TAGGTTCTGGTATTTCTATATTTTCTTCCTCATCTGTTGAAGTGTTTTCTTTATCAGATTTATAG
*
83730705 CTTGTAACCTTTAAGTCTTCTAGGTTATCAAAATTACTAGAACTATTATTGTCTATAGTGTCATA
456 CTTGTAACCTTTAAGTCTTCTAGGTTATCAAAATTACTAGAACTACTATTGTCTATAGTGTCATA
83730770 GTTTGACATATAATGATAGTTAAATAAAGTAAAAAAGTCTTTATGTTTTTCATAAATTTGTTCTA
521 GTTTGACATATAATGATAGTTAAATAAAGTAAAAAAGTCTTTATGTTTTTCATAAATTTGTTCTA
83730835 TTAATTTTAAATATTCAACTATTTCATTTTTATCAGATGTTTTAGTAAATTTATTCTTCCAATGT
586 TTAATTTTAAATATTCAACTATTTCATTTTTATCAGATGTTTTAGTAAATTTATTCTTCCAATGT
83730900 TCTATAAGTTGTTTATAGGATTGGAAAACATATTCTTGTTGATGAGTATATTTTCTTT
651 TCTATAAGTTGTTTATAGGATTGGAAAACATATTCTTGTTGATGAGTATATTTTCTTT
83730958 TTTGAAATGTTCCAACAAAATAATTTAAAAAAATTTCTTTTGACCGCATATTGTTGTTGTTTACA
1 TTTGAAATGTTCCAACAAAATAATTTAAAAAAATTTCTTTTGACCGCATATTGTTGTTGTTTACA
83731023 ACAATAGTCATAGATTATGCCCAATCATCTATGATTTCTTCATAGTCAGTTATAAGAATATTAGT
66 ACAATAGTCATAGATTATGCCCAATCATCTATGATTTCTTCATAGTCAGTTATAAGAATATTAGT
83731088 TAAGTCTAAATATATTCCTCCTTGAGCAACATTTCTTTTATTTAAATCATCTATTCTATGTGGGA
131 TAAGTCTAAATATATTCCTCCTTGAGCAACATTTCTTTTATTTAAATCATCTATTCTATGTGGGA
83731153 CAAGTTGACTAGATGTTTCTCCTGAATTTTTAGATTTTATTTCATTAGTAGCTATATTTTCGGCT
196 CAAGTTGACTAGATGTTTCTCCTGAATTTTTAGATTTTATTTCATTAGTAGCTATATTTTCGGCT
83731218 TGGTTACCAAAAATTCTAGCTGTATTTTCAACTTTTTCATAATCTTTATTAAAAGATCTTAGATA
261 TGGTTACCAAAAATTCTAGCTGTATTTTCAACTTTTTCATAATCTTTATTAAAAGATCTTAGATA
83731283 ATCATCATTTTGAATATCTGACTCTATTTTTCTTTTTCCATAAAGATCTGTTTGATTAGTATTCA
326 ATCATCATTTTGAATATCTGACTCTATTTTTCTTTTTCCATAAAGATCTGTTTGATTAGTATTCA
*
83731348 TAGGTTCTGGTATTTCTATATTTTCTTCCTCATCTGTTGAAGTGTTTTCTTTATCAGATTTGTAG
391 TAGGTTCTGGTATTTCTATATTTTCTTCCTCATCTGTTGAAGTGTTTTCTTTATCAGATTTATAG
83731413 CTTGTAACCTTTAAGTCTTCTAGGTTATCAAAATTACTAGAACTACTATTGTCTATAGTGTCATA
456 CTTGTAACCTTTAAGTCTTCTAGGTTATCAAAATTACTAGAACTACTATTGTCTATAGTGTCATA
*
83731478 GTTTGACATATAATGATAGTTAAATAAAGTAAATAAGTCTTTATGTTTTTCATAAATTTGTTCTA
521 GTTTGACATATAATGATAGTTAAATAAAGTAAAAAAGTCTTTATGTTTTTCATAAATTTGTTCTA
83731543 TTAATTTTAAATATTCAACTATTTCATTTTTATCAGATGTTTTAGTAAATTTATTCTTCCAATGT
586 TTAATTTTAAATATTCAACTATTTCATTTTTATCAGATGTTTTAGTAAATTTATTCTTCCAATGT
83731608 TCTATAAGTTGTTTATAGGATTGGAAAACATATTCTTGTTGATGAGTATATTTTCTTT
651 TCTATAAGTTGTTTATAGGATTGGAAAACATATTCTTGTTGATGAGTATATTTTCTTT
83731666 TTT
1 TTT
83731669 CATATTTTTT
Statistics
Matches: 708, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
708 708 1.00
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (708 bp):
TTTGAAATGTTCCAACAAAATAATTTAAAAAAATTTCTTTTGACCGCATATTGTTGTTGTTTACA
ACAATAGTCATAGATTATGCCCAATCATCTATGATTTCTTCATAGTCAGTTATAAGAATATTAGT
TAAGTCTAAATATATTCCTCCTTGAGCAACATTTCTTTTATTTAAATCATCTATTCTATGTGGGA
CAAGTTGACTAGATGTTTCTCCTGAATTTTTAGATTTTATTTCATTAGTAGCTATATTTTCGGCT
TGGTTACCAAAAATTCTAGCTGTATTTTCAACTTTTTCATAATCTTTATTAAAAGATCTTAGATA
ATCATCATTTTGAATATCTGACTCTATTTTTCTTTTTCCATAAAGATCTGTTTGATTAGTATTCA
TAGGTTCTGGTATTTCTATATTTTCTTCCTCATCTGTTGAAGTGTTTTCTTTATCAGATTTATAG
CTTGTAACCTTTAAGTCTTCTAGGTTATCAAAATTACTAGAACTACTATTGTCTATAGTGTCATA
GTTTGACATATAATGATAGTTAAATAAAGTAAAAAAGTCTTTATGTTTTTCATAAATTTGTTCTA
TTAATTTTAAATATTCAACTATTTCATTTTTATCAGATGTTTTAGTAAATTTATTCTTCCAATGT
TCTATAAGTTGTTTATAGGATTGGAAAACATATTCTTGTTGATGAGTATATTTTCTTT
Found at i:83748677 original size:20 final size:19
Alignment explanation
Indices: 83748648--83748689 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
83748638 TAAAATATAA
83748648 TTTCTAAAAAATAATTTATT
1 TTTCT-AAAAATAATTTATT
*
83748668 TTTCTGAAAATAATTTATT
1 TTTCTAAAAATAATTTATT
83748687 TTT
1 TTT
83748690 TTGGTGTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (19 bp):
TTTCTAAAAATAATTTATT
Found at i:83749220 original size:22 final size:23
Alignment explanation
Indices: 83749176--83749220 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
83749166 TCAGCTTGGA
**
83749176 TGCTGGTCTGCCTGTTGGTTTGC
1 TGCTGGTCTGCCTGTTGCATTGC
*
83749199 TGCTGGT-TTCCTGTTGCATTGC
1 TGCTGGTCTGCCTGTTGCATTGC
83749221 AGGCCAAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.02, C:0.22, G:0.31, T:0.44
Consensus pattern (23 bp):
TGCTGGTCTGCCTGTTGCATTGC
Found at i:83750520 original size:4 final size:4
Alignment explanation
Indices: 83750511--83750541 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
83750501 TTTATATCCA
*
83750511 TATC TATC TATC TATC TATC TACC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TAT
83750542 ATATATATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (4 bp):
TATC
Found at i:83752342 original size:102 final size:103
Alignment explanation
Indices: 83752158--83752350 Score: 259
Period size: 102 Copynumber: 1.9 Consensus size: 103
83752148 TCCCTAATGA
* *
83752158 CAACTCTAGATGTGGCGGCACTGATAATTTTTTTTTACTTTTTCAGTATCACTTCTTCATGTGGA
1 CAACTCTAGATGTGGCGGCACCGATAATTTTTTTTTACTTTTTCAATATCACTTCTTCATGTGGA
* *
83752223 GTCACCAAAATTAGTAAAAAGAAATTTTCATCCAGTAC
66 GGCACCAAAATTAGTAAAAAAAAATTTTCATCCAGTAC
* * * *
83752261 CAACTTTAGTTGTGGTGGCACCGATAA-TTTTTTTTACTTTTTTAATAAT-ACCTT-TTCATGTG
1 CAACTCTAGATGTGGCGGCACCGATAATTTTTTTTTACTTTTTCAAT-ATCA-CTTCTTCATGTG
83752323 GAGGCACCAAAATCT-GTAAAAAAAAATT
64 GAGGCACCAAAAT-TAGTAAAAAAAAATT
83752351 CCCTAGTGCC
Statistics
Matches: 79, Mismatches: 8, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
102 50 0.63
103 29 0.37
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.38
Consensus pattern (103 bp):
CAACTCTAGATGTGGCGGCACCGATAATTTTTTTTTACTTTTTCAATATCACTTCTTCATGTGGA
GGCACCAAAATTAGTAAAAAAAAATTTTCATCCAGTAC
Found at i:83752437 original size:101 final size:99
Alignment explanation
Indices: 83752318--83752545 Score: 305
Period size: 101 Copynumber: 2.3 Consensus size: 99
83752308 ATACCTTTTC
* *
83752318 ATGTGGAGGCACCAAAATCTGTAAAAAAAAATTCCCTAGTGCCAACTCCAAATGTGGTAGCACTA
1 ATGTGGAGGCACCAAAATCTGTAAAAAAAAATTCCCTAGTGCCAACTCCAAATGTGATAGCACCA
** *
83752383 GTACTTTTTTTTTGAATTATTCGATGCCGCCTCTAT
66 GTA-AATTTTTTTGAATTATTCAATGCC-CCTCTAT
* * *
83752419 ATGTGGAGGCACCAAAATCTATAAAAAAAAATTCTCTGGTGCCAACTCCAAATGTGATAGCACCA
1 ATGTGGAGGCACCAAAATCTGTAAAAAAAAATTCCCTAGTGCCAACTCCAAATGTGATAGCACCA
* *
83752484 GTAAATTTTTTTGAATTTTTCAATGCCCCTCTTT
66 GTAAATTTTTTTGAATTATTCAATGCCCCTCTAT
* * *
83752518 ATTTAGAGACACCAAAA-CTTGTAAAAAA
1 ATGTGGAGGCACCAAAATC-TGTAAAAAA
83752546 CAAAAAAATT
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
98 1 0.01
99 28 0.25
100 20 0.18
101 63 0.56
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.31
Consensus pattern (99 bp):
ATGTGGAGGCACCAAAATCTGTAAAAAAAAATTCCCTAGTGCCAACTCCAAATGTGATAGCACCA
GTAAATTTTTTTGAATTATTCAATGCCCCTCTAT
Found at i:83753403 original size:16 final size:16
Alignment explanation
Indices: 83753382--83753412 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83753372 TTCTTTCAAC
*
83753382 ATAATAACAATAAAAA
1 ATAATAAAAATAAAAA
83753398 ATAATAAAAATAAAA
1 ATAATAAAAATAAAA
83753413 CCTTCACCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.19
Consensus pattern (16 bp):
ATAATAAAAATAAAAA
Found at i:83753693 original size:100 final size:101
Alignment explanation
Indices: 83753457--83753742 Score: 317
Period size: 100 Copynumber: 2.8 Consensus size: 101
83753447 TAGCTAGTGA
* * *
83753457 TGCCACCACATTTAGAGTTGACACCAGGAAAATTTTTTTTTACTA-ATTTTGGTGCCTCCACATG
1 TGCCGCCACATTTAGAGTTGGCACCAGGGAAATTTTTTTTTAC-AGATTTTGGTGCCTCCACATG
* *
83753521 AAGAGGCGGCACCGAAAAATTTTAAAAAAAATTACAGG
65 AAGAGGCGACACCGAAAAA-TGTAAAAAAAATTACAGG
** * * * *
83753559 TATCGTCACATTTGGAGTTGGCACCAGGGTAATTTTTTTTTTACAGATTTTGGTGCCTCTACATG
1 TGCCGCCACATTTAGAGTTGGCACCAGGG-AAATTTTTTTTTACAGATTTTGGTGCCTCCACATG
* * ** * **
83753624 ATGAGGTGACATTG-AAAA-GTAGAAAAAATTATTGG
65 AAGAGGCGACACCGAAAAATGTAAAAAAAATTACAGG
* * * *
83753659 TGCCGCCACATCTAGAGTTGGCACCAGGGGAATTTTTTTTTACTGATTTTGGTGCCTCCATATGA
1 TGCCGCCACATTTAGAGTTGGCACCAGGGAAATTTTTTTTTACAGATTTTGGTGCCTCCACATGA
*
83753724 AGAGGCAACACCGAAAAAT
66 AGAGGCGACACCGAAAAAT
83753743 TTTTAAAAAA
Statistics
Matches: 147, Mismatches: 33, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
99 39 0.27
100 41 0.28
102 27 0.18
103 40 0.27
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (101 bp):
TGCCGCCACATTTAGAGTTGGCACCAGGGAAATTTTTTTTTACAGATTTTGGTGCCTCCACATGA
AGAGGCGACACCGAAAAATGTAAAAAAAATTACAGG
Found at i:83753751 original size:100 final size:100
Alignment explanation
Indices: 83753457--83753752 Score: 324
Period size: 103 Copynumber: 2.9 Consensus size: 100
83753447 TAGCTAGTGA
* * * *
83753457 TGCCACCACATTTAGAGTTGACACCAGGAAAATTTTTTTTTACTAATTTTGGTGCCTCCACATGA
1 TGCCGCCACATTTAGAGTTGGCACCAGGGAAATTTTTTTTTACTGATTTTGGTGCCTCCACATGA
*
83753522 AGAGGCGGCACCGAAAAATTTTAAAAAAAATTACAGG
66 AGAGGCGACACCGAAAAATTTT--AAAAAATTACAGG
** * * * * *
83753559 TATCGTCACATTTGGAGTTGGCACCAGGGTAATTTTTTTTTTACAGATTTTGGTGCCTCTACATG
1 TGCCGCCACATTTAGAGTTGGCACCAGGG-AAATTTTTTTTTACTGATTTTGGTGCCTCCACATG
* * ** * ** **
83753624 ATGAGGTGACATTG-AAAAGTAGAAAAAATTATTGG
65 AAGAGGCGACACCGAAAAATTTTAAAAAATTACAGG
* * *
83753659 TGCCGCCACATCTAGAGTTGGCACCAGGGGAATTTTTTTTTACTGATTTTGGTGCCTCCATATGA
1 TGCCGCCACATTTAGAGTTGGCACCAGGGAAATTTTTTTTTACTGATTTTGGTGCCTCCACATGA
*
83753724 AGAGGCAACACCGAAAAATTTTTAAAAAA
66 AGAGGCGACACCGAAAAA-TTTTAAAAAA
83753753 ATTTAAAAAA
Statistics
Matches: 152, Mismatches: 39, Indels: 7
0.77 0.20 0.04
Matches are distributed among these distances:
99 39 0.26
100 39 0.26
101 7 0.05
102 27 0.18
103 40 0.26
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (100 bp):
TGCCGCCACATTTAGAGTTGGCACCAGGGAAATTTTTTTTTACTGATTTTGGTGCCTCCACATGA
AGAGGCGACACCGAAAAATTTTAAAAAATTACAGG
Found at i:83753852 original size:111 final size:111
Alignment explanation
Indices: 83753646--83753851 Score: 272
Period size: 111 Copynumber: 1.9 Consensus size: 111
83753636 TGAAAAGTAG
* *
83753646 AAAAAATTATTGGTGCCGCCACATCTAGAGTTGGCACCAGGGGAATTTTTTTTTACTGATTTTGG
1 AAAAAATTATTAGTGCCGCCACATCTAGAGTTGGCACCAGGGGAATTTTTTTTTACTAATTTTGG
* * *
83753711 TGCCTCCATATGAAGAGGCAACACCGAAAAATTTTTAAAAAAATTT
66 TGACTCCACATGAAGAGGCAACACCAAAAAATTTTTAAAAAAATTT
* * * *
83753757 AAAAAATTATTAGTGTCGGCACATCTTGAGTTGGCACCAGGGGAATTTTTTTTTTATTAATTTTG
1 AAAAAATTATTAGTGCCGCCACATCTAGAGTTGGCACCAGGGGAA-TTTTTTTTTACTAATTTTG
* * * *
83753822 GTTACTCTACGTGAAGA-G-ACCACCAAAAAA
65 GTGACTCCACATGAAGAGGCAACACCAAAAAA
83753852 AAAATTTACA
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
110 10 0.12
111 42 0.52
112 29 0.36
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (111 bp):
AAAAAATTATTAGTGCCGCCACATCTAGAGTTGGCACCAGGGGAATTTTTTTTTACTAATTTTGG
TGACTCCACATGAAGAGGCAACACCAAAAAATTTTTAAAAAAATTT
Found at i:83756967 original size:21 final size:22
Alignment explanation
Indices: 83756941--83756985 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
83756931 TTTTGGTATT
*
83756941 TTATTAAT-TAATTTAATGTTA
1 TTATTAATATAATTAAATGTTA
* *
83756962 TTATTAGTATAATTAAATTTTA
1 TTATTAATATAATTAAATGTTA
83756984 TT
1 TT
83756986 TTTATGCTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (22 bp):
TTATTAATATAATTAAATGTTA
Found at i:83759253 original size:18 final size:18
Alignment explanation
Indices: 83759230--83759267 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
83759220 GAAAAATAAT
83759230 AGTAAGTGCATTCCTTAG
1 AGTAAGTGCATTCCTTAG
83759248 AGTAAGTGCATTCCTTAG
1 AGTAAGTGCATTCCTTAG
83759266 AG
1 AG
83759268 AAATTTGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (18 bp):
AGTAAGTGCATTCCTTAG
Found at i:83769008 original size:44 final size:44
Alignment explanation
Indices: 83768906--83769020 Score: 126
Period size: 44 Copynumber: 2.6 Consensus size: 44
83768896 TAGCAAATAT
* * * * *
83768906 TATCTCTCTGAAGTTACAGTAGAGAAGATTAAAGCTATAAATCT
1 TATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCATAAACCC
83768950 TAT-TGCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCACT-AACCC
1 TATCT-CTCTGAAGTTGCAGTAGAGCAGATTAAAGCCA-TAAACCC
* * *
83768994 TATCTCTCTAAAGTTGTAGTGGAGCAG
1 TATCTCTCTGAAGTTGCAGTAGAGCAG
83769021 TTGAAGATAG
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
43 1 0.02
44 57 0.95
45 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (44 bp):
TATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCATAAACCC
Found at i:83769067 original size:88 final size:87
Alignment explanation
Indices: 83768957--83769263 Score: 253
Period size: 88 Copynumber: 3.3 Consensus size: 87
83768947 TCTTATTGCT
* * * *
83768957 CTGAAGTTGCAGTAGAGCAGATTAAAGCCACTAACCCTATCTCTCTAAAGTTGTAGTGGAGCAGT
1 CTGAAGTTGCAGTGGAGTAGATTAAAGCCAC-AACCCTATCTCACTAAAGTTGCAGTGGAGCAGT
*
83769022 TGAAGATAGCGAATCTTATTTCC
65 TGAAGATAGCGAATCTTATCTCC
* * * * *
83769045 CTGAAGTTGCAGTGGAATAGATTTGAGCTACAAGTCACAATTCCTATAC-CCCTGAAGTTGCAGT
1 CTGAAGTTGCAGTGGAGTAGA--T----TA-AAGCCACAA-CCCTAT-CTCACTAAAGTTGCAGT
*
83769109 GAGATGGA-TTGAAGTTATTATGGCGAATCTTATCTCC
57 G-GA-GCAGTTGAAG--A-TA--GCGAATCTTATCTCC
* * * * *
83769146 CTGAAGTTACTGTGGAGTAGATTGAAGCCACAAACCTTATCTCACTAAAATTGCAGTGGAGCAGG
1 CTGAAGTTGCAGTGGAGTAGATTAAAGCCAC-AACCCTATCTCACTAAAGTTGCAGTGGAGCA-G
*
83769211 TTGAAGTTA-C-AAGTCTTATCTCC
64 TTGAAGATAGCGAA-TCTTATCTCC
83769234 CTGAAGTTGCAGTGGAGTAGATTAAAGCCA
1 CTGAAGTTGCAGTGGAGTAGATTAAAGCCA
83769264 TAAATTTTAT
Statistics
Matches: 173, Mismatches: 25, Indels: 42
0.72 0.10 0.17
Matches are distributed among these distances:
87 2 0.01
88 56 0.32
90 1 0.01
91 2 0.01
92 2 0.01
93 3 0.02
94 33 0.19
95 27 0.16
96 9 0.05
97 2 0.01
98 1 0.01
99 3 0.02
101 32 0.18
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (87 bp):
CTGAAGTTGCAGTGGAGTAGATTAAAGCCACAACCCTATCTCACTAAAGTTGCAGTGGAGCAGTT
GAAGATAGCGAATCTTATCTCC
Found at i:83769205 original size:44 final size:43
Alignment explanation
Indices: 83769134--83769290 Score: 152
Period size: 44 Copynumber: 3.6 Consensus size: 43
83769124 TATTATGGCG
* * *
83769134 AATCTTATCTCCCTGAAGTTACTGTGGAGTAGATTGAAGCCACA
1 AATCTTATCT-CCTAAAGTTGCAGTGGAGTAGATTGAAGCCACA
* * * * **
83769178 AACCTTATCTCACTAAAATTGCAGTGGAGCAGGTTGAAGTTACA
1 AATCTTATCTC-CTAAAGTTGCAGTGGAGTAGATTGAAGCCACA
* * * *
83769222 AGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCATA
1 AATCTTATCT-CCTAAAGTTGCAGTGGAGTAGATTGAAGCCACA
*
83769266 AATTTTATCTCCTTAAAGTTGCAGT
1 AATCTTATCTCC-TAAAGTTGCAGT
83769291 TGTAACACCC
Statistics
Matches: 88, Mismatches: 22, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
43 3 0.03
44 84 0.95
45 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (43 bp):
AATCTTATCTCCTAAAGTTGCAGTGGAGTAGATTGAAGCCACA
Found at i:83769287 original size:233 final size:231
Alignment explanation
Indices: 83768843--83769290 Score: 497
Period size: 233 Copynumber: 1.9 Consensus size: 231
83768833 AAGATCGGTG
* * *
83768843 AAGTCATAAATCCCATATCCCTGAAGTTGCAGTGGGATGGATTGAAGTTATTATAGCAAATATTA
1 AAGTCACAAATCCCATACCCCTGAAGTTGCAGTGAGATGGATTGAAGTTATTATAGCAAATATTA
* * * * * * *
83768908 TCTCTCTGAAGTTACAGTAGAGAAGATTAAAGCTATAAATCTTATTGCTCTGAAGTTGCAGTAGA
66 TCTCCCTGAAGTTACAGTAGAGAAGATTAAAGCCACAAACCTTATTGCACTAAAATTGCAGTAGA
* * *
83768973 GCAGATTAAAGCCACTAACCCTATCTCTCTAAAGTTGTAGTGGAGCAGTTGAAGATAGCGAATCT
131 GCAGATTAAAGCCACTAACCCTATCTCCCTAAAGTTGCAGTGGAGCAGTTAAAGATA--GAATCT
* *
83769038 TATTTCCCTGAAGTTGCAGTGGAATAGATTTGAGCTAC
194 TATCTCCCTAAAGTTGCAGTGGAATAGATTTGAGCTAC
* * * * *
83769076 AAGTCACAATTCCTATACCCCTGAAGTTGCAGTGAGATGGATTGAAGTTATTATGGCGAATCTTA
1 AAGTCACAAATCCCATACCCCTGAAGTTGCAGTGAGATGGATTGAAGTTATTATAGCAAATATTA
* * * * *
83769141 TCTCCCTGAAGTTACTGTGGAGTAGATTGAAGCCACAAACCTTATCT-CACTAAAATTGCAGTGG
66 TCTCCCTGAAGTTACAGTAGAGAAGATTAAAGCCACAAACCTTAT-TGCACTAAAATTGCAGTAG
* * ** * * * *
83769205 AGCAGGTTGAAGTTAC-AAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCATA-AA
130 AGCAGATTAAAGCCACTAA-CCCTATCTCCCTAAAGTTGCAGTGGAGCAG-TTAAAG--ATAGAA
* *
83769268 TTTTATCTCCTTAAAGTTGCAGT
191 TCTTATCTCCCTAAAGTTGCAGT
83769291 TGTAACACCC
Statistics
Matches: 175, Mismatches: 35, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
232 2 0.01
233 164 0.94
234 6 0.03
236 3 0.02
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (231 bp):
AAGTCACAAATCCCATACCCCTGAAGTTGCAGTGAGATGGATTGAAGTTATTATAGCAAATATTA
TCTCCCTGAAGTTACAGTAGAGAAGATTAAAGCCACAAACCTTATTGCACTAAAATTGCAGTAGA
GCAGATTAAAGCCACTAACCCTATCTCCCTAAAGTTGCAGTGGAGCAGTTAAAGATAGAATCTTA
TCTCCCTAAAGTTGCAGTGGAATAGATTTGAGCTAC
Found at i:83773960 original size:16 final size:15
Alignment explanation
Indices: 83773934--83773963 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
83773924 ACTAGATTGG
83773934 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
83773949 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
83773964 ACGCCATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:83776077 original size:39 final size:40
Alignment explanation
Indices: 83776001--83776176 Score: 232
Period size: 40 Copynumber: 4.5 Consensus size: 40
83775991 CACTCGAATA
** *
83776001 CCTTCGGGAAATAGCCCGGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCC-GAAACTAGTAACTCGCACAAATG
*
83776041 CCTTCGGGACTTAGCCCG-AACTAGTAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGAAACTAGTAACTCGCACAAATG
*
83776080 CTTTCGGGACTTAGCCCGAAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGAAACTAGTAACTCGCACAAATG
* * ** *
83776120 CCTTCGGGACTTAGCTCGAAATTAGCCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGAAACTAGTAACTCGCACAAATG
83776160 CCTTCGGG-CTTAGCCCG
1 CCTTCGGGACTTAGCCCG
83776177 GTTATCAATC
Statistics
Matches: 121, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 43 0.36
40 77 0.64
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGAAACTAGTAACTCGCACAAATG
Found at i:83776106 original size:79 final size:79
Alignment explanation
Indices: 83776023--83776176 Score: 229
Period size: 79 Copynumber: 1.9 Consensus size: 79
83776013 AGCCCGGATA
* * * *
83776023 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG-AACTAGTAATTCGCACAAATGCTTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAAACTAGCAACTAGCACAAATGCCTTCGG
83776087 GACTTAGCCCGAAAC
66 G-CTTAGCCCGAAAC
* * *
83776102 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGAAATTAGCCACTAGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAAACTAGCAACTAGCACAAATGCCTTCGG
83776167 GCTTAGCCCG
66 GCTTAGCCCG
83776177 GTTATCAATC
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
79 44 0.66
80 23 0.34
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (79 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAAACTAGCAACTAGCACAAATGCCTTCGG
GCTTAGCCCGAAAC
Found at i:83782791 original size:40 final size:40
Alignment explanation
Indices: 83782747--83782923 Score: 250
Period size: 40 Copynumber: 4.5 Consensus size: 40
83782737 CACTCGAATA
** *
83782747 CCTTCGGGAAATAGCCCGGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCC-GAAACTAGTAACTCGCACAAATG
83782787 CCTTCGGGACTTAGCCCGAAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGAAACTAGTAACTCGCACAAATG
83782827 CCTTCGGGACTTAGCCCGAAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGAAACTAGTAACTCGCACAAATG
* * * ** *
83782867 CCTTCGGGACTTAGCTCGGAATTAGCCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGAAACTAGTAACTCGCACAAATG
83782907 CCTTCGGG-CTTAGCCCG
1 CCTTCGGGACTTAGCCCG
83782924 GTTATCAATC
Statistics
Matches: 126, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 11 0.09
40 115 0.91
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGAAACTAGTAACTCGCACAAATG
Found at i:83785409 original size:34 final size:34
Alignment explanation
Indices: 83785338--83785456 Score: 122
Period size: 33 Copynumber: 3.6 Consensus size: 34
83785328 AGTCCCCTTT
* * *
83785338 TGTTATTTTTACTA-T-TTAT-TAATTAATTTAA
1 TGTTATTATTACTATTATTATATCATTAATTTTA
* * *
83785369 TGTTATTATTACTATAATTATAT-TTTCATTTTA
1 TGTTATTATTACTATTATTATATCATTAATTTTA
83785402 TGCTTATTATTA-TATTATTATATCATTAATTTTA
1 TG-TTATTATTACTATTATTATATCATTAATTTTA
* *
83785436 TATTACTATTACTATTATTAT
1 TGTTATTATTACTATTATTAT
83785457 TATATTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
31 13 0.18
33 31 0.43
34 28 0.39
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.60
Consensus pattern (34 bp):
TGTTATTATTACTATTATTATATCATTAATTTTA
Found at i:83785419 original size:8 final size:8
Alignment explanation
Indices: 83785406--83785462 Score: 50
Period size: 8 Copynumber: 7.5 Consensus size: 8
83785396 ATTTTATGCT
83785406 TATTATTA
1 TATTATTA
83785414 TATTATTA
1 TATTATTA
*
83785422 TATCATTA
1 TATTATTA
83785430 -ATT-TTA
1 TATTATTA
*
83785436 TATTA--C
1 TATTATTA
*
83785442 TATTACTA
1 TATTATTA
83785450 TTATTATTA
1 -TATTATTA
83785459 TATT
1 TATT
83785463 TCCTTTTTGT
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
6 8 0.21
7 5 0.13
8 19 0.49
9 7 0.18
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (8 bp):
TATTATTA
Found at i:83786104 original size:15 final size:15
Alignment explanation
Indices: 83786084--83786112 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
83786074 TTCGGGGATT
83786084 TAAGATATTGCGTCC
1 TAAGATATTGCGTCC
83786099 TAAGATATTGCGTC
1 TAAGATATTGCGTC
83786113 GTAACTTACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (15 bp):
TAAGATATTGCGTCC
Found at i:83787487 original size:3 final size:3
Alignment explanation
Indices: 83787479--83787506 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
83787469 TTCAAATCAA
83787479 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
83787507 CTTTAGTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:83795839 original size:27 final size:26
Alignment explanation
Indices: 83795791--83795850 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
83795781 GCGAGGCTGC
*
83795791 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
83795818 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
83795844 CAGATAT
1 CAGATAT
83795851 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:83814433 original size:17 final size:19
Alignment explanation
Indices: 83814391--83814434 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
83814381 ATGAAATTTT
*
83814391 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
83814410 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
83814428 AA-TATTA
1 AATTATTA
83814435 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:83815299 original size:18 final size:18
Alignment explanation
Indices: 83815276--83815312 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
83815266 AGCAATGAAG
83815276 AGTTTGAATTAAATTCAA
1 AGTTTGAATTAAATTCAA
83815294 AGTTTGAATTAAATTCAA
1 AGTTTGAATTAAATTCAA
83815312 A
1 A
83815313 AAGGAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (18 bp):
AGTTTGAATTAAATTCAA
Found at i:83818678 original size:24 final size:24
Alignment explanation
Indices: 83818636--83818731 Score: 77
Period size: 24 Copynumber: 4.0 Consensus size: 24
83818626 TCCTTCTGAA
* *
83818636 CTGATGAACAGTAAGCTCTATTGAG
1 CTGA-GAATAGTAAGCTCTAATGAG
* *
83818661 TTG-GAAATAGTAAACTCTAATGAG
1 CTGAG-AATAGTAAGCTCTAATGAG
*
83818685 CTGAGAATAGTAAGCTCTTATGAG
1 CTGAGAATAGTAAGCTCTAATGAG
* * * * *
83818709 ATAAGAACAATAAGCTCTTATGA
1 CTGAGAATAGTAAGCTCTAATGA
83818732 ATTGATATAT
Statistics
Matches: 58, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
23 1 0.02
24 54 0.93
25 3 0.05
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (24 bp):
CTGAGAATAGTAAGCTCTAATGAG
Found at i:83827819 original size:28 final size:28
Alignment explanation
Indices: 83827779--83827848 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
83827769 ATAGTAAGTC
*
83827779 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
83827807 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
83827835 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83827849 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:83835692 original size:28 final size:28
Alignment explanation
Indices: 83835652--83835721 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
83835642 ATAGTAAGTC
*
83835652 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
83835680 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
83835708 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83835722 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:83844159 original size:93 final size:93
Alignment explanation
Indices: 83844045--83844216 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
83844035 CGCCCATAAG
* *
83844045 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83844110 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
83844138 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83844203 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
83844217 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:83844213 original size:46 final size:46
Alignment explanation
Indices: 83844038--83844213 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
83844028 TGTAACCCGC
* * * *
83844038 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
83844084 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
83844134 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
83844177 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
83844214 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:83844232 original size:46 final size:46
Alignment explanation
Indices: 83844087--83844225 Score: 144
Period size: 47 Copynumber: 3.0 Consensus size: 46
83844077 TTCGCATCCA
83844087 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
83844135 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
83844180 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
83844226 CTAGTGACAT
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.37
47 30 0.40
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:83848586 original size:47 final size:47
Alignment explanation
Indices: 83848532--83848842 Score: 496
Period size: 47 Copynumber: 6.6 Consensus size: 47
83848522 TATTTGAATA
*
83848532 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
83848579 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
83848626 AATGTGAAAGTGTATATATATTTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
83848675 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
83848722 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * * * *
83848769 AATGTGAAAGTATATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
83848816 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
83848843 TCCCGAAGGG
Statistics
Matches: 246, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
47 202 0.82
49 44 0.18
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:83848692 original size:143 final size:141
Alignment explanation
Indices: 83848532--83848842 Score: 523
Period size: 143 Copynumber: 2.2 Consensus size: 141
83848522 TATTTGAATA
83848532 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
83848597 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATTTGATAAGGCCTAAT
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTATATATATGTGATAAGGCCGAAT
* *
83848662 GGCCGATGTGATG
129 GGCCAACGTGATG
83848675 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
83848740 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAGGGCCGAGTGG
66 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCGAATGG
83848805 CCAACGTGATG
131 CCAACGTGATG
* *
83848816 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
83848843 TCCCGAAGGG
Statistics
Matches: 159, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
141 57 0.36
143 102 0.64
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCGAATGG
CCAACGTGATG
Found at i:83850535 original size:40 final size:40
Alignment explanation
Indices: 83850252--83850523 Score: 420
Period size: 40 Copynumber: 6.8 Consensus size: 40
83850242 GAGAATTGAG
83850252 AGTGATGTATCCGGGCTAAGTCCCGAA-AGGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGA-GCATTCGTGCT
83850292 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
83850332 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
83850372 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
83850412 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
83850452 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
83850492 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
83850524 ATCATGCTGG
Statistics
Matches: 215, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 214 1.00
41 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:83854576 original size:47 final size:47
Alignment explanation
Indices: 83854522--83854830 Score: 505
Period size: 47 Copynumber: 6.6 Consensus size: 47
83854512 TATTTGAATA
*
83854522 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
83854569 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
83854616 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
83854665 AATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
83854711 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
83854758 AATGTGAAAGTGTATATATGTGAT-AGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
83854804 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
83854831 TCCCGAAGGG
Statistics
Matches: 248, Mismatches: 10, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
46 87 0.35
47 116 0.47
49 45 0.18
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:83854802 original size:93 final size:94
Alignment explanation
Indices: 83854522--83854830 Score: 523
Period size: 93 Copynumber: 3.3 Consensus size: 94
83854512 TATTTGAATA
83854522 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
83854587 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
83854616 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
83854681 TATGTGATAAGGCCTAAT-GCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
83854711 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
83854776 TGTGAT-AGGCCGAGTGGCCAACGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
* *
83854804 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
83854831 TCCCGAAGGG
Statistics
Matches: 203, Mismatches: 9, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
92 7 0.03
93 93 0.46
94 12 0.06
95 23 0.11
96 68 0.33
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:83857849 original size:37 final size:38
Alignment explanation
Indices: 83857807--83857881 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
83857797 GTTCATCCTT
83857807 TTCATTTC-TTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
83857844 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
83857882 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 8 0.22
38 29 0.78
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:83859153 original size:39 final size:39
Alignment explanation
Indices: 83859067--83859208 Score: 169
Period size: 39 Copynumber: 3.6 Consensus size: 39
83859057 TACTCGAATG
* *
83859067 ATATCTGGGCTAAGTCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCT-AGCGACT
* *
83859107 ACATCCGGACTAAGATCCG-AGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGCGACT
* * *
83859146 ATATCCGGGCTAAGTCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGCGACT
* *
83859185 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-TCCGAAGGC
83859209 CTTGTGCGAG
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
38 4 0.05
39 49 0.56
40 31 0.35
41 4 0.05
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGCGACT
Found at i:83859229 original size:78 final size:79
Alignment explanation
Indices: 83859067--83859235 Score: 182
Period size: 78 Copynumber: 2.2 Consensus size: 79
83859057 TACTCGAATG
* * * * * *
83859067 ATATCTGGGCTAAGTCCGAAGGCTTTTGTGCTAAGCGACTACATCCGGACTAAGATCCGAGGCAT
1 ATATCCGGGCTAAGTCCGAAGGCATTTATGCTAAGCGACCACATCCGGACTAAGACCCGAGGCAC
*
83859132 TTGTGCTAGCGACT
66 TTGTGCGAGCGACT
* * **
83859146 ATATCCGGGCTAAGTCCGAAGGCATTTATGCT-AGTGACCATATCCGGGTTAAGACCCGAAGGC-
1 ATATCCGGGCTAAGTCCGAAGGCATTTATGCTAAGCGACCACATCCGGACTAAGACCCG-AGGCA
* **
83859209 CTTGTGCGAGTGGTT
65 CTTGTGCGAGCGACT
83859224 ATATCC-GGCTAA
1 ATATCCGGGCTAA
83859236 CCCCGAAGAT
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
77 6 0.08
78 36 0.48
79 33 0.44
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTATGCTAAGCGACCACATCCGGACTAAGACCCGAGGCAC
TTGTGCGAGCGACT
Found at i:83865173 original size:28 final size:27
Alignment explanation
Indices: 83865134--83865190 Score: 105
Period size: 28 Copynumber: 2.1 Consensus size: 27
83865124 TGATGTGTTG
83865134 TTCGGCATAGGTAAGCATATTGAAGGC
1 TTCGGCATAGGTAAGCATATTGAAGGC
83865161 TTCGGCCATAGGTAAGCATATTGAAGGC
1 TTCGG-CATAGGTAAGCATATTGAAGGC
83865189 TT
1 TT
83865191 TATCTTGACT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 5 0.17
28 24 0.83
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
TTCGGCATAGGTAAGCATATTGAAGGC
Found at i:83865756 original size:69 final size:70
Alignment explanation
Indices: 83865626--83865759 Score: 164
Period size: 69 Copynumber: 1.9 Consensus size: 70
83865616 TACTCGAATG
* * * *
83865626 ATATCCGGGCTAAGTCCGAAGGCTTTGTGCTAAAGGCGACTACATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCGAAGGCATTATGCT-AAGGCGACCACATCCGGACTAAGACCCGAAGGC
83865691 TGCGAT
65 TGCGAT
* * **
83865697 ATATCCGGGCTAAGTCCCGAAGGCATTATGCT-A-GTGACCATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGT-CCGAAGGCATTATGCTAAGGCGACCACATCCGGACTAAGACCCGAAGGC
83865760 CTTGTGCGAG
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
69 24 0.44
70 1 0.02
71 15 0.28
72 14 0.26
ACGTcount: A:0.27, C:0.25, G:0.28, T:0.21
Consensus pattern (70 bp):
ATATCCGGGCTAAGTCCGAAGGCATTATGCTAAGGCGACCACATCCGGACTAAGACCCGAAGGCT
GCGAT
Found at i:83865779 original size:39 final size:39
Alignment explanation
Indices: 83865696--83865794 Score: 112
Period size: 39 Copynumber: 2.6 Consensus size: 39
83865686 AAGGCTGCGA
* *
83865696 TATATCCGGGCTAAGTCCCGAAGGCATTATGCTAGTGAC
1 TATATCCGGGCTAAGACCCGAAGGCATTATGCGAGTGAC
* * * * **
83865735 CATATCCGGGTTAAGACCCGAAGGCCTTGTGCGAGTGGT
1 TATATCCGGGCTAAGACCCGAAGGCATTATGCGAGTGAC
83865774 TATATCC-GGCTAA-ACCCGAAG
1 TATATCCGGGCTAAGACCCGAAG
83865795 ATGCTTGATT
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
37 8 0.16
38 5 0.10
39 37 0.74
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTATGCGAGTGAC
Found at i:83871318 original size:93 final size:93
Alignment explanation
Indices: 83871205--83871376 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
83871195 CGCCCATAAG
* * *
83871205 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCA
83871270 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
83871298 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCA
83871363 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
83871377 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:83871373 original size:46 final size:46
Alignment explanation
Indices: 83871198--83871373 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
83871188 TGTAACCCGC
* * *
83871198 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
83871244 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
83871294 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
83871337 CCATAAGTGAACTCGGACTCAAATCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
83871374 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:83877355 original size:20 final size:20
Alignment explanation
Indices: 83877332--83877372 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
83877322 TGTGAATTGT
*
83877332 TGCTAAACCATTTCACTGCA
1 TGCTAAACCATCTCACTGCA
*
83877352 TGCTAAACCATCTCATTGCA
1 TGCTAAACCATCTCACTGCA
83877372 T
1 T
83877373 TTTTCGTTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (20 bp):
TGCTAAACCATCTCACTGCA
Found at i:83888881 original size:49 final size:49
Alignment explanation
Indices: 83888761--83888899 Score: 197
Period size: 49 Copynumber: 2.8 Consensus size: 49
83888751 CACCATCTAA
* * *
83888761 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGG
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGG
* * * *
83888812 TACGCATAGTAGCCTACACTTAGTACTACACATGTGACCAATTATCCGG
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGG
83888861 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
83888900 TCACAATAGT
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 43 0.56
50 1 0.01
51 33 0.43
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGG
Found at i:83891194 original size:24 final size:24
Alignment explanation
Indices: 83891161--83891206 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
83891151 AGTAATTTTG
83891161 ATTATCAATTTAT-TTTCTTTAGT
1 ATTATCAATTTATGTTTCTTTAGT
*
83891184 ATTATTCAATTTATGTTTTTTTA
1 ATTA-TCAATTTATGTTTCTTTA
83891207 TTAATTGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 4 0.20
24 9 0.45
25 7 0.35
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.63
Consensus pattern (24 bp):
ATTATCAATTTATGTTTCTTTAGT
Found at i:83897985 original size:150 final size:150
Alignment explanation
Indices: 83897714--83897985 Score: 323
Period size: 150 Copynumber: 1.8 Consensus size: 150
83897704 TTTAACAACC
* * * *
83897714 TAGGAGGAAATTGTTAAGCATCTATGTGATAGGGGAATACAAATGTTGAACTTCACTTATGAACT
1 TAGGAGGAAATGGTCAAGCATCTATGTGATAAGGGAATACAAATGTTGAACTTCACCTATGAACT
* * * * *
83897779 CAATATTATTCATGATGAATGGCAGCTAAGTGACAGTTCCGATGGAATCACCCTTCCCATCTACC
66 CAACATTATTCATAATGAATGCCAGCTAAGTGACAATTCCAATGGAATCACCCTTCCCATCTACC
83897844 TGTTCTAGTGTTCAACGACA
131 TGTTCTAGTGTTCAACGACA
* * * ** *
83897864 TAGGAGGAAATGGTCAGGCATCTATAG-GCTAAGGGAATACAAGTGTTGAACTTTGCCTATGAAT
1 TAGGAGGAAATGGTCAAGCATCTAT-GTGATAAGGGAATACAAATGTTGAACTTCACCTATGAAC
* * * * * *
83897928 TTAACATTGTTCATAATGAATGCC-GATTAAGTGATAATTCTAATGGAATCATCCTTCC
65 TCAACATTATTCATAATGAATGCCAG-CTAAGTGACAATTCCAATGGAATCACCCTTCC
83897986 TATTTACATG
Statistics
Matches: 99, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
149 1 0.01
150 97 0.98
151 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (150 bp):
TAGGAGGAAATGGTCAAGCATCTATGTGATAAGGGAATACAAATGTTGAACTTCACCTATGAACT
CAACATTATTCATAATGAATGCCAGCTAAGTGACAATTCCAATGGAATCACCCTTCCCATCTACC
TGTTCTAGTGTTCAACGACA
Found at i:83900568 original size:21 final size:22
Alignment explanation
Indices: 83900544--83900588 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
83900534 TATTTAACCG
*
83900544 AAAATAAATTGGATTA-AAATT
1 AAAATAAATTAGATTATAAATT
* *
83900565 AAAATTAATTATATTATAAATT
1 AAAATAAATTAGATTATAAATT
83900587 AA
1 AA
83900589 TATTCATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
AAAATAAATTAGATTATAAATT
Found at i:83902634 original size:34 final size:34
Alignment explanation
Indices: 83902593--83902660 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
83902583 CTTGAAAGTG
*
83902593 AAAACTTCATGAAAACATAACTAATTTCCTTTCC
1 AAAACTTCATGAAAACACAACTAATTTCCTTTCC
83902627 AAAACTTCATGAAAACACAACTAATTTCCTTTCC
1 AAAACTTCATGAAAACACAACTAATTTCCTTTCC
83902661 TACGAGCTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.41, C:0.25, G:0.03, T:0.31
Consensus pattern (34 bp):
AAAACTTCATGAAAACACAACTAATTTCCTTTCC
Found at i:83904009 original size:27 final size:27
Alignment explanation
Indices: 83903967--83904145 Score: 207
Period size: 27 Copynumber: 6.7 Consensus size: 27
83903957 ACATTGGGGT
* * * *
83903967 AAAACAACCATCTTACCATAAAAGGGC
1 AAAACAATCATTTTACCACATAAGGGC
*
83903994 AAAACAATTATTTTACCACATAAGGGC
1 AAAACAATCATTTTACCACATAAGGGC
* * * *
83904021 AAAACAGTCATTTTACAACATAAGAGA
1 AAAACAATCATTTTACCACATAAGGGC
* * *
83904048 AAAATAGTCATTTTACGACATAAGGGC
1 AAAACAATCATTTTACCACATAAGGGC
* *
83904075 AAAACAACCATTTTACCTCATAAGGGC
1 AAAACAATCATTTTACCACATAAGGGC
* *
83904102 AAAACAACCATTTTACCTCATAAGGGC
1 AAAACAATCATTTTACCACATAAGGGC
83904129 AAAACAATCA-TTTACCA
1 AAAACAATCATTTTACCA
83904146 ACTTGAAGGT
Statistics
Matches: 131, Mismatches: 21, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
26 6 0.05
27 125 0.95
ACGTcount: A:0.45, C:0.21, G:0.11, T:0.22
Consensus pattern (27 bp):
AAAACAATCATTTTACCACATAAGGGC
Found at i:83908792 original size:81 final size:81
Alignment explanation
Indices: 83908670--83908933 Score: 232
Period size: 81 Copynumber: 3.3 Consensus size: 81
83908660 GTATACATTA
* * * * * **
83908670 CATAGGGGTAAAACAATCATT-TTACCATAAAAGGGGGAAACAGTCATTTAACCACGTAAGGGCA
1 CATAAGGGCAAAACAGTCATTATAACCACAAAAGGGAAAAACAGTCATTTAACCAC-TAAGGGCA
* * *
83908734 AAATAGTTATTTTACTT
65 AAACAATTATTTTACCT
* * * * * *
83908751 CATAAGGGCAAAACAGTCATTAT-ACCTCTTAAA-GGAAAAACAATAATTTTACCCCATAAGGGC
1 CATAAGGGCAAAACAGTCATTATAACCAC-AAAAGGGAAAAACAGTCATTTAACCAC-TAAGGGC
83908814 AAAACAATTATTTTACCT
64 AAAACAATTATTTTACCT
* * * *
83908832 CATAAGGGCAACACAATCA-TATAACCACAAAAGGGCAAAACAGTCATTTTACACCA-TAAGGGG
1 CATAAGGGCAAAACAGTCATTATAACCACAAAAGGGAAAAACAGTCA-TTTA-ACCACTAAGGGC
*
83908895 AAAACAATCATTTTACCT
64 AAAACAATTATTTTACCT
* * *
83908913 CAAAAAGGCAAAATAGTCATT
1 CATAAGGGCAAAACAGTCATT
83908934 CACCAATTTG
Statistics
Matches: 144, Mismatches: 32, Indels: 13
0.76 0.17 0.07
Matches are distributed among these distances:
80 6 0.04
81 127 0.88
82 8 0.06
83 3 0.02
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (81 bp):
CATAAGGGCAAAACAGTCATTATAACCACAAAAGGGAAAAACAGTCATTTAACCACTAAGGGCAA
AACAATTATTTTACCT
Found at i:83908933 original size:27 final size:27
Alignment explanation
Indices: 83908670--83908925 Score: 210
Period size: 27 Copynumber: 9.5 Consensus size: 27
83908660 GTATACATTA
* *
83908670 CATAGGGGTAAAACAATCATTTTACCAT
1 CATAAGGGCAAAACAATCATTTTACC-T
* ** * * *
83908698 -AAAAGGGGGAAACAGTCATTTAACCA
1 CATAAGGGCAAAACAATCATTTTACCT
* * * * *
83908724 CGTAAGGGCAAAATAGTTATTTTACTT
1 CATAAGGGCAAAACAATCATTTTACCT
* *
83908751 CATAAGGGCAAAACAGTCATTATACCT
1 CATAAGGGCAAAACAATCATTTTACCT
* * * * *
83908778 CTTAAAGGAAAAACAATAATTTTACCC
1 CATAAGGGCAAAACAATCATTTTACCT
*
83908805 CATAAGGGCAAAACAATTATTTTACCT
1 CATAAGGGCAAAACAATCATTTTACCT
* * * *
83908832 CATAAGGGCAACACAATCATATAACCA
1 CATAAGGGCAAAACAATCATTTTACCT
* *
83908859 CAAAAGGGCAAAACAGTCATTTTACAC-
1 CATAAGGGCAAAACAATCATTTTAC-CT
*
83908886 CATAAGGGGAAAACAATCATTTTACCT
1 CATAAGGGCAAAACAATCATTTTACCT
* *
83908913 CAAAAAGGCAAAA
1 CATAAGGGCAAAA
83908926 TAGTCATTCA
Statistics
Matches: 176, Mismatches: 49, Indels: 7
0.76 0.21 0.03
Matches are distributed among these distances:
26 1 0.01
27 174 0.99
28 1 0.01
ACGTcount: A:0.44, C:0.19, G:0.14, T:0.23
Consensus pattern (27 bp):
CATAAGGGCAAAACAATCATTTTACCT
Found at i:83909084 original size:17 final size:18
Alignment explanation
Indices: 83909053--83909086 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
83909043 CATATTGCGG
83909053 GCCCATGTGGGCCCACAT
1 GCCCATGTGGGCCCACAT
83909071 GCCCATGT-GGCCCACA
1 GCCCATGTGGGCCCACA
83909087 AAGCCCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.18, C:0.41, G:0.26, T:0.15
Consensus pattern (18 bp):
GCCCATGTGGGCCCACAT
Found at i:83909092 original size:18 final size:18
Alignment explanation
Indices: 83909053--83909093 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
83909043 CATATTGCGG
*
83909053 GCCCATGTGGGCCCACAT
1 GCCCATGTGGGCCCACAA
83909071 GCCCATGT-GGCCCACAAA
1 GCCCATGTGGGCCCAC-AA
83909089 GCCCA
1 GCCCA
83909094 AAAATGGCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.22, C:0.41, G:0.24, T:0.12
Consensus pattern (18 bp):
GCCCATGTGGGCCCACAA
Found at i:83911882 original size:47 final size:47
Alignment explanation
Indices: 83911813--83911905 Score: 186
Period size: 47 Copynumber: 2.0 Consensus size: 47
83911803 TAATCACTTG
83911813 TATTTCTACAAGCTCAAGCACACTTTAGACAAGAAAGATAAAAAAAA
1 TATTTCTACAAGCTCAAGCACACTTTAGACAAGAAAGATAAAAAAAA
83911860 TATTTCTACAAGCTCAAGCACACTTTAGACAAGAAAGATAAAAAAA
1 TATTTCTACAAGCTCAAGCACACTTTAGACAAGAAAGATAAAAAAA
83911906 TTATGAAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.51, C:0.17, G:0.11, T:0.22
Consensus pattern (47 bp):
TATTTCTACAAGCTCAAGCACACTTTAGACAAGAAAGATAAAAAAAA
Found at i:83919817 original size:5 final size:5
Alignment explanation
Indices: 83919805--83919868 Score: 112
Period size: 5 Copynumber: 13.0 Consensus size: 5
83919795 TTACTTTATT
*
83919805 TAAT- TAATA TAATA TGATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
83919854 TAATA TAATA TAATA
1 TAATA TAATA TAATA
83919869 ATATTTTATA
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
4 4 0.07
5 53 0.93
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (5 bp):
TAATA
Found at i:83926210 original size:40 final size:41
Alignment explanation
Indices: 83926117--83926211 Score: 147
Period size: 41 Copynumber: 2.3 Consensus size: 41
83926107 TCTTACATCA
83926117 CACACTAAGTGCCAAATATAGCCAAACCTATCTCGATCTCG
1 CACACTAAGTGCCAAATATAGCCAAACCTATCTCGATCTCG
* * * *
83926158 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAT-TCG
1 CACACTAAGTGCCAAATATAGCCAAACCTATCTCGATCTCG
83926198 CACACTAAGTGCCA
1 CACACTAAGTGCCA
83926212 CAAATAAATG
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
40 17 0.34
41 33 0.66
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (41 bp):
CACACTAAGTGCCAAATATAGCCAAACCTATCTCGATCTCG
Found at i:83946610 original size:26 final size:26
Alignment explanation
Indices: 83946579--83946686 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
83946569 TGAAATGTCC
*
83946579 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
83946605 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
83946631 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
**
83946657 ATCATATAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
83946683 ATCA
1 ATCA
83946687 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:83949818 original size:40 final size:41
Alignment explanation
Indices: 83949774--83949891 Score: 114
Period size: 41 Copynumber: 2.9 Consensus size: 41
83949764 AGTGTCGTAC
* *
83949774 ATAGCTGAAGTTATCTT-AAATCACACACTAAGTGCCAAAT
1 ATAGCCGAAGCTATCTTGAAATCACACACTAAGTGCCAAAT
** * *
83949814 ATAGCCGAAGCTATCTTGATCTCGCACACTAAGTGCCATAT
1 ATAGCCGAAGCTATCTTGAAATCACACACTAAGTGCCAAAT
* * * * * *
83949855 ATAGACAAAGCTATGTCG-ATTCGCACACTAAGTGCCA
1 ATAGCCGAAGCTATCTTGAAATCACACACTAAGTGCCA
83949892 CAAATAACCG
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 32 0.49
41 33 0.51
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (41 bp):
ATAGCCGAAGCTATCTTGAAATCACACACTAAGTGCCAAAT
Found at i:83949848 original size:41 final size:40
Alignment explanation
Indices: 83949797--83949891 Score: 136
Period size: 41 Copynumber: 2.4 Consensus size: 40
83949787 TCTTAAATCA
* * *
83949797 CACACTAAGTGCCAAATATAGCCGAAGCTATCTTGATCTCG
1 CACACTAAGTGCCAAATATAGACAAAGCTATCTCGAT-TCG
* *
83949838 CACACTAAGTGCCATATATAGACAAAGCTATGTCGATTCG
1 CACACTAAGTGCCAAATATAGACAAAGCTATCTCGATTCG
83949878 CACACTAAGTGCCA
1 CACACTAAGTGCCA
83949892 CAAATAACCG
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 17 0.35
41 32 0.65
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (40 bp):
CACACTAAGTGCCAAATATAGACAAAGCTATCTCGATTCG
Found at i:83951762 original size:22 final size:24
Alignment explanation
Indices: 83951726--83951774 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
83951716 GCAAAGACCG
83951726 AAATAGAAAACTGAAAAAAAAACT
1 AAATAGAAAACTGAAAAAAAAACT
* *
83951750 AAATA-AAAA-TGAAAGAAAAATT
1 AAATAGAAAACTGAAAAAAAAACT
83951772 AAA
1 AAA
83951775 ACTAACTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 14 0.61
23 4 0.17
24 5 0.22
ACGTcount: A:0.73, C:0.04, G:0.08, T:0.14
Consensus pattern (24 bp):
AAATAGAAAACTGAAAAAAAAACT
Found at i:83957643 original size:25 final size:25
Alignment explanation
Indices: 83957615--83957662 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
83957605 TTATATTATG
* * *
83957615 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
83957640 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
83957663 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:83957723 original size:20 final size:20
Alignment explanation
Indices: 83957698--83957744 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
83957688 GTTTTGATAT
83957698 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
83957718 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
83957738 ACATGAT
1 ACATGAT
83957745 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:83957886 original size:24 final size:24
Alignment explanation
Indices: 83957793--83957886 Score: 91
Period size: 25 Copynumber: 3.8 Consensus size: 24
83957783 GGAAGTGCAA
* *
83957793 AAAGGG-TTATGCCACAGTTTACCG
1 AAAGGGCTT-TGCCCCAGTTTATCG
* **
83957817 AAAAGGACTTTTGCCCCAGTTTATTA
1 -AAAGGGC-TTTGCCCCAGTTTATCG
83957843 AAAGGGCCTTTGCCCCAGTTTATCG
1 AAAGGG-CTTTGCCCCAGTTTATCG
*
83957868 AAAGGGCTTTGCCCTAGTT
1 AAAGGGCTTTGCCCCAGTT
83957887 ATTAAAAGAG
Statistics
Matches: 57, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
24 12 0.21
25 31 0.54
26 12 0.21
27 2 0.04
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
AAAGGGCTTTGCCCCAGTTTATCG
Found at i:83957899 original size:24 final size:24
Alignment explanation
Indices: 83957817--83957899 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
83957807 CAGTTTACCG
*
83957817 AAAAGGACTTTTGCCCCAGTTTATT
1 AAAAGGGC-TTTGCCCCAGTTTATT
*
83957842 AAAAGGGCCTTTGCCCCAGTTTATC
1 AAAAGGG-CTTTGCCCCAGTTTATT
* *
83957867 GAAAGGGCTTTGCCCTAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATT
83957890 AAAAGAGGCT
1 AAAAG-GGCT
83957900 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
23 8 0.16
24 14 0.28
25 27 0.54
26 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATT
Found at i:83958164 original size:38 final size:38
Alignment explanation
Indices: 83958108--83958200 Score: 159
Period size: 38 Copynumber: 2.4 Consensus size: 38
83958098 CGTTTACAAT
*
83958108 AAAGGCTTCGGCCCAGTGTTATGAAATATGAAATATGA
1 AAAGGCTTCGACCCAGTGTTATGAAATATGAAATATGA
*
83958146 AAAGGCTTCGACCTAGTGTTATGAAATATGAAATATGA
1 AAAGGCTTCGACCCAGTGTTATGAAATATGAAATATGA
*
83958184 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGACCCAGT
83958201 ATACGCTGAG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 51 1.00
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (38 bp):
AAAGGCTTCGACCCAGTGTTATGAAATATGAAATATGA
Found at i:83976861 original size:47 final size:47
Alignment explanation
Indices: 83976788--83976918 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 47
83976778 CACAATCGAT
* * *
83976788 AAGTACCTATACCATGGCTCGCAGCCAAATCAAGGTAACTTATCTTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCTCA
* * *
83976835 GAGTACCTAAACCATGGCCCGTAGCCAAATCAAGGTAACTTCTCTCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCTCA
* ** *
83976882 AAATACCTATATAATGGCCCGTAGCCAAATTAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
83976919 TTATTCGCAC
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCTCA
Found at i:83995283 original size:34 final size:34
Alignment explanation
Indices: 83995244--83995310 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
83995234 GATGCTTCGC
* *
83995244 TATAAATCACAAATTTTTTACCCGATTCTGGCTA
1 TATAAATCACAAAATCTTTACCCGATTCTGGCTA
*
83995278 TATAAATCACAAAATCTTTACCCGATTTTGGCT
1 TATAAATCACAAAATCTTTACCCGATTCTGGCT
83995311 GTACTAACAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (34 bp):
TATAAATCACAAAATCTTTACCCGATTCTGGCTA
Found at i:83999105 original size:27 final size:26
Alignment explanation
Indices: 83999049--83999156 Score: 144
Period size: 27 Copynumber: 4.0 Consensus size: 26
83999039 AGCATGGCTG
* *
83999049 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
83999075 CCAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
83999102 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
83999129 CTAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
83999156 C
1 C
83999157 TAGGACGCTT
Statistics
Matches: 74, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
26 15 0.20
27 57 0.77
28 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:83999448 original size:19 final size:19
Alignment explanation
Indices: 83999424--83999479 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
83999414 TTGGGCCCCG
83999424 TTGGCCCATTAACCCAATT
1 TTGGCCCATTAACCCAATT
**
83999443 TTGGCCCATTAACCTGATT
1 TTGGCCCATTAACCCAATT
* *
83999462 TCGGCCCGTTAAGCCCAA
1 TTGGCCCATTAA-CCCAA
83999480 AATATCATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 27 0.90
20 3 0.10
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (19 bp):
TTGGCCCATTAACCCAATT
Found at i:84000589 original size:24 final size:23
Alignment explanation
Indices: 84000556--84000637 Score: 119
Period size: 24 Copynumber: 3.4 Consensus size: 23
84000546 GCCGGCCAAC
84000556 TCTTGCTCCTTGATCAGCTCCTAAA
1 TCTT-CTCCTT-ATCAGCTCCTAAA
84000581 TCTTCTCCTTTATCAGCTCCTAAA
1 TCTTCTCC-TTATCAGCTCCTAAA
*
84000605 TCCTCTCCCTTATCAGCTCCTAAA
1 TCTTCT-CCTTATCAGCTCCTAAA
84000629 TCTTCTCCT
1 TCTTCTCCT
84000638 GACAGCCTGT
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
23 3 0.06
24 42 0.79
25 8 0.15
ACGTcount: A:0.18, C:0.37, G:0.06, T:0.39
Consensus pattern (23 bp):
TCTTCTCCTTATCAGCTCCTAAA
Found at i:84003026 original size:24 final size:23
Alignment explanation
Indices: 84002998--84003098 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 23
84002988 CCAACTCTTG
*
84002998 CTCCTTGATCAGCTCCTAAATCTT
1 CTCCTT-ATCAGCTCCTAAATCCT
*
84003022 CTCCTTTATCAGCTCCAAAATCCT
1 CTCC-TTATCAGCTCCTAAATCCT
84003046 CTCCCTTATCAGCTCCTAAATCCT
1 CT-CCTTATCAGCTCCTAAATCCT
84003070 CTCCCTTATCAGCTCCTAAATCCT
1 CT-CCTTATCAGCTCCTAAATCCT
84003094 CTCCT
1 CTCCT
84003099 GACAGCCATT
Statistics
Matches: 72, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
23 3 0.04
24 65 0.90
25 4 0.06
ACGTcount: A:0.21, C:0.40, G:0.05, T:0.35
Consensus pattern (23 bp):
CTCCTTATCAGCTCCTAAATCCT
Found at i:84005576 original size:50 final size:50
Alignment explanation
Indices: 84005508--84005743 Score: 243
Period size: 50 Copynumber: 4.8 Consensus size: 50
84005498 TCGGCCACTT
* * *
84005508 TATGACAGCCAGTGTAAGACCATGGCTGGGACATGGCATCGGCTTCGAGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGAGA
* *
84005558 TATGAAAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCTT-GAG-
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGAGA
* * * ** *
84005606 -AT--G-TCTCAGTGTAAGACCATGTCTAGGACATGGCATTGGCACCGACA
1 TATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGAGA
* * * * * *
84005653 GATGAGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCTGCCTCGATA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGAGA
*
84005703 TATGAGAG-TCAATGTAAGACCATGTCTGGGACATGGCATCG
1 TATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCG
84005744 ACTTTGATGT
Statistics
Matches: 152, Mismatches: 26, Indels: 16
0.78 0.13 0.08
Matches are distributed among these distances:
44 2 0.01
45 30 0.20
46 2 0.01
47 2 0.01
48 2 0.01
49 3 0.02
50 110 0.72
51 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGAGA
Found at i:84005623 original size:45 final size:48
Alignment explanation
Indices: 84005517--84005774 Score: 222
Period size: 50 Copynumber: 5.3 Consensus size: 48
84005507 TTATGACAGC
*
84005517 CAGTGTAAGACCATGGCTGGGACATGGCATCGGCTTCGAGATATGAAAGCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGAGA-ATG--AGCT
* *
84005568 -AGTATAAGACCATGTCTGGGACATGGCATCGGCTT-GAG-ATG-TCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGAGAATGAGCT
* * ** *
84005612 CAGTGTAAGACCATGTCTAGGACATGGCATTGGCACCGACAGATGAGAGC-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGAGA-AT--GAGCT
* * * * *
84005662 CAGTGTAAGACCATGTCTGGGATATGGCATCTGCCTCGATATATGAGAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGAGA-ATGAG-CT
* * * ** *
84005712 CAATGTAAGACCATGTCTGGGACATGGCATCGACTTTGATGTGTAAGC-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGA-GAATGAGCT
84005760 CAGTGTAAGACCATG
1 CAGTGTAAGACCATG
84005775 CCCGAGACAT
Statistics
Matches: 166, Mismatches: 31, Indels: 23
0.75 0.14 0.10
Matches are distributed among these distances:
44 2 0.01
45 30 0.18
46 2 0.01
47 3 0.02
48 19 0.11
49 3 0.02
50 106 0.64
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGAGAATGAGCT
Found at i:84005624 original size:95 final size:95
Alignment explanation
Indices: 84005517--84005692 Score: 253
Period size: 95 Copynumber: 1.9 Consensus size: 95
84005507 TTATGACAGC
* ** * * *
84005517 CAGTGTAAGACCATGGCTGGGACATGGCATCGGCTTCGAGATATGAAAGCTAGTATAAGACCATG
1 CAGTGTAAGACCATGGCTAGGACATGGCATCGGCACCGACAGATGAAAGCCAGTATAAGACCATG
84005582 TCTGGGACATGGCATCGGCTTGAGATGTCT
66 TCTGGGACATGGCATCGGCTTGAGATGTCT
* * * *
84005612 CAGTGTAAGACCATGTCTAGGACATGGCATTGGCACCGACAGATGAGAGCCAGTGTAAGACCATG
1 CAGTGTAAGACCATGGCTAGGACATGGCATCGGCACCGACAGATGAAAGCCAGTATAAGACCATG
*
84005677 TCTGGGATATGGCATC
66 TCTGGGACATGGCATC
84005693 TGCCTCGATA
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
95 70 1.00
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (95 bp):
CAGTGTAAGACCATGGCTAGGACATGGCATCGGCACCGACAGATGAAAGCCAGTATAAGACCATG
TCTGGGACATGGCATCGGCTTGAGATGTCT
Found at i:84011854 original size:30 final size:31
Alignment explanation
Indices: 84011794--84011854 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
84011784 ATTTACGAGC
*
84011794 CTAGGGGTAAAATCGTAATTTTTGTAAAAGT
1 CTAGGGGCAAAATCGTAATTTTTGTAAAAGT
* * *
84011825 CTAGGGGCAAAATGGTCA-TTTTGTCAAAGT
1 CTAGGGGCAAAATCGTAATTTTTGTAAAAGT
84011855 ATAAATTATG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.33
Consensus pattern (31 bp):
CTAGGGGCAAAATCGTAATTTTTGTAAAAGT
Found at i:84012461 original size:48 final size:48
Alignment explanation
Indices: 84012411--84012693 Score: 295
Period size: 48 Copynumber: 5.9 Consensus size: 48
84012401 GCCACATTAC
* * *
84012411 GAGAGCCAGTGTAAGACCCTGTCTGGGACATGGCATTGGCATTGAGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAT
* *
84012459 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGC-TTGAGAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAT
* * *
84012506 --GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGGTAGAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TG-AGAT
* * * *
84012554 GAGAGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGCCTCGATATAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG--AGAT
** * * * *
84012604 GAGAGTTAGTGTAATACCATGTTTGGGACATGGCATCGACTTTGATG-T
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GAT
* * * *
84012652 GTGAGCTAGTGTAAGACCATGTCCGGGACATGGCATTGGCAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
84012694 CTTACCCTAT
Statistics
Matches: 197, Mismatches: 31, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
45 34 0.17
46 1 0.01
47 7 0.04
48 78 0.40
49 1 0.01
50 76 0.39
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (48 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAT
Found at i:84012584 original size:50 final size:50
Alignment explanation
Indices: 84012411--84012694 Score: 280
Period size: 50 Copynumber: 5.9 Consensus size: 50
84012401 GCCACATTAC
* * * *
84012411 GAGAGCCAGTGTAAGACCCTGTCTGGGACATGGCATTGGCAT-TG-AGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGGTAGAT
* * *
84012459 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGC-T-TG-AGAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGGTAGAT
* *
84012506 --GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGGTAGAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGGTAGAT
* * * *
84012554 GAGAGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGCCTCGATATAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGGTAGAT
** * * * * * *
84012604 GAGAGTTAGTGTAATACCATGTTTGGGACATGGCATCGACTTTGAT-G-T
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGGTAGAT
* * * *
84012652 GTGAGCTAGTGTAAGACCATGTCCGGGACATGGCATTGGCATC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC
84012695 TTACCCTATG
Statistics
Matches: 199, Mismatches: 32, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
45 34 0.17
46 1 0.01
47 7 0.04
48 77 0.39
50 80 0.40
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (50 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGGTAGAT
Found at i:84015333 original size:16 final size:17
Alignment explanation
Indices: 84015304--84015338 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
84015294 AATAACCCAC
84015304 AGTAAGCTTCATAGCTA
1 AGTAAGCTTCATAGCTA
*
84015321 AGTAAGC-TCATAGTTA
1 AGTAAGCTTCATAGCTA
84015337 AG
1 AG
84015339 CAATTCAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (17 bp):
AGTAAGCTTCATAGCTA
Found at i:84015689 original size:47 final size:47
Alignment explanation
Indices: 84015591--84015718 Score: 159
Period size: 47 Copynumber: 2.7 Consensus size: 47
84015581 AATCGATAAG
* *** *
84015591 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCTTGGAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCAAAA
* *
84015638 TACCTGA-ACCATGACCCGTAGCCAAATCAAGGTAACTCCTCTCAAAA
1 TACCT-ATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCAAAA
* *
84015685 TACCTATATCATGGCCCGTAGCCAAATTAAGGTA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA
84015719 TTATTCGCAC
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 1 0.01
47 67 0.97
48 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.23
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCAAAA
Found at i:84016307 original size:29 final size:28
Alignment explanation
Indices: 84016261--84016320 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
84016251 TTTTCATTTA
*
84016261 TTTCACAATTCAACCCCTCAATTTACATT
1 TTTCACAATTCAACCCCT-AATGTACATT
* * *
84016290 TTTCACAATTTAATCCCTAATGTGCATT
1 TTTCACAATTCAACCCCTAATGTACATT
84016318 TTT
1 TTT
84016321 ACTCAAAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 11 0.41
29 16 0.59
ACGTcount: A:0.28, C:0.25, G:0.03, T:0.43
Consensus pattern (28 bp):
TTTCACAATTCAACCCCTAATGTACATT
Found at i:84017120 original size:35 final size:35
Alignment explanation
Indices: 84017067--84017187 Score: 100
Period size: 35 Copynumber: 3.5 Consensus size: 35
84017057 CCCTTTCGAG
* **
84017067 GTGTTGCCCTAAATGACCTATATATTGTTTACACA
1 GTGTTGCCCTAAAGGACCTATATACCGTTTACACA
**
84017102 GTGTTGCCCTGGAGGACCTATATACCGTTTACACA
1 GTGTTGCCCTAAAGGACCTATATACCGTTTACACA
* ** * * * *
84017137 ATGTCACCCAAAATGACCTATATATCG-TCATCACA
1 GTGTTGCCCTAAAGGACCTATATACCGTTTA-CACA
**
84017172 GTGTCACCCTAAAGGA
1 GTGTTGCCCTAAAGGA
84017188 TCAGTAGATA
Statistics
Matches: 68, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
34 2 0.03
35 66 0.97
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (35 bp):
GTGTTGCCCTAAAGGACCTATATACCGTTTACACA
Found at i:84023028 original size:26 final size:26
Alignment explanation
Indices: 84022991--84023042 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
84022981 TTTTGCATGA
*
84022991 AAAACAATATAGAAACAAATATTAGC
1 AAAACAAAATAGAAACAAATATTAGC
*
84023017 AAAACAAAATAGAAGCAAATATTAGC
1 AAAACAAAATAGAAACAAATATTAGC
84023043 TCACTTGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.62, C:0.12, G:0.10, T:0.17
Consensus pattern (26 bp):
AAAACAAAATAGAAACAAATATTAGC
Found at i:84025704 original size:48 final size:48
Alignment explanation
Indices: 84025652--84025972 Score: 301
Period size: 48 Copynumber: 6.7 Consensus size: 48
84025642 AGATGTCGAC
* * * *
84025652 GCCATGCCCCGGACATGGTCTTACACTGGCTCACACATCAAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACACATCAATGCCGAT
** * * * *
84025700 GCCATGTCCCAGACATGGTCTTACACTTACTCTCATATATCGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACAC-T-GGCTCACACATCAATGCCGAT
* * * * **
84025750 GCCATGTCCTAGGCATGGTCTTACACTGGCTCTCATCTGTCGGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACA-C-ATCAATGCCGAT
* * *
84025800 GCCATGTCCCAGACATGGTCTTACACT-G-ACACATATCAA-GCTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACACATCAATGCCGAT
* * ***
84025845 GCCATGTCCTAGACATGGTCTTACACTAGCTCTTGTC-TCAATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTC-ACACATCAATGCCGAT
* * *
84025893 GCCATGTCCCAGACATGGTCTTACACTAGCTTACATC-TTAATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCACA-CATCAATGCCGAT
*
84025941 ACCATGTCCCAGACATGGTCTTACACTGGCTC
1 GCCATGTCCCAGACATGGTCTTACACTGGCTC
84025973 TCATAATGTG
Statistics
Matches: 220, Mismatches: 44, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
45 31 0.14
46 3 0.01
47 5 0.02
48 106 0.48
49 3 0.01
50 72 0.33
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTCACACATCAATGCCGAT
Found at i:84025767 original size:50 final size:50
Alignment explanation
Indices: 84025652--84026009 Score: 270
Period size: 48 Copynumber: 7.5 Consensus size: 50
84025642 AGATGTCGAC
* * * * * * * *
84025652 GCCATGCCCCGGACATGGTCTTACACTG--GCTCACACATCAAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGCCGAT
*
84025700 GCCATGTCCCAGACATGGTCTTACACTTACTCTCATATATCGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGCCGAT
* * * * *
84025750 GCCATGTCCTAGGCATGGTCTTACACTGGCTCTCATCTGTCG-GTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAG-GCCGAT
* * *
84025800 GCCATGTCCCAGACATGGTCTTACACTGA----CACATATC-AAGCTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGCCGAT
* * * * *
84025845 GCCATGTCCTAGACATGGTCTTACACT-AGCTCT--TGTCTCAATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATCGAGGCCGAT
* * *
84025893 GCCATGTCCCAGACATGGTCTTACACT-AGCT-TACATCT-T-AATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTCT-CATATATCGAGGCCGAT
* * * *
84025941 ACCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT-GTGGCTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGCCGAT
*
84025989 G-TATGTCCCA-ACAT-GTCTTAC
1 GCCATGTCCCAGACATGGTCTTAC
84026010 TCTAGCACAC
Statistics
Matches: 254, Mismatches: 40, Indels: 35
0.77 0.12 0.11
Matches are distributed among these distances:
44 1 0.00
45 38 0.15
46 9 0.04
47 12 0.05
48 107 0.42
49 3 0.01
50 84 0.33
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGCCGAT
Found at i:84026007 original size:93 final size:93
Alignment explanation
Indices: 84025663--84026018 Score: 313
Period size: 95 Copynumber: 3.8 Consensus size: 93
84025653 CCATGCCCCG
* *
84025663 GACATGGTCTTACACTGGCTCACACATCAAAGT---CGATGCCATGTCCCAGACATGGTCTTACA
1 GACATGGTCTTACACTGGCT--CTCAT-AATGTGGCCGATGCCATGTCCCAGACATGGTCTTACA
* * *
84025725 CTTACTCTCATATATCGAGGCCGATGCCATGTCCTA
63 C-TA---GCACATATC-AAGCCGATGCCATGTCCTA
* *
84025761 GGCATGGTCTTACACTGGCTCTCAT-CTGTCGGTGCCGATGCCATGTCCCAGACATGGTCTTACA
1 GACATGGTCTTACACTGGCTCTCATAATGT--G-GCCGATGCCATGTCCCAGACATGGTCTTACA
*
84025825 CT-GACACATATCAAGCTGATGCCATGTCCTA
63 CTAG-CACATATCAAGCCGATGCCATGTCCTA
*
84025856 GACATGGTCTTACACTAGCTCTTGTC-TCAA--T-GCCGATGCCATGTCCCAGACATGGTCTTAC
1 GACATGGTCTTACACTGGCTC---TCAT-AATGTGGCCGATGCCATGTCCCAGACATGGTCTTAC
* * * *
84025917 ACTAGCTTACATCTTAATGCCGATACCATGTCCCA
62 ACTAGC--ACATATCAA-GCCGATGCCATGTCCTA
* * *
84025952 GACATGGTCTTACACTGGCTCTCATAATGTGGCTGATG-TATGTCCCA-ACAT-GTCTTACTCTA
1 GACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGACATGGTCTTACACTA
84026014 GCACA
66 GCACA
84026019 CATATCACCC
Statistics
Matches: 218, Mismatches: 20, Indels: 47
0.76 0.07 0.16
Matches are distributed among these distances:
91 3 0.01
93 50 0.23
94 8 0.04
95 52 0.24
96 51 0.23
97 2 0.01
98 21 0.10
99 1 0.00
100 30 0.14
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (93 bp):
GACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGACATGGTCTTACACTA
GCACATATCAAGCCGATGCCATGTCCTA
Found at i:84026015 original size:141 final size:143
Alignment explanation
Indices: 84025653--84025968 Score: 390
Period size: 143 Copynumber: 2.2 Consensus size: 143
84025643 GATGTCGACG
* * * *
84025653 CCATGCCCCGGACATGGTCTTACACTGGCTCACACATCAAAG-TCGATGCCATGTCCCAGACATG
1 CCATGTCCCAGACATGGTCTTACACT-G-ACACATATC-AAGCT-GATGCCATGTCCCAGACATG
* * * * * * *
84025717 GTCTTACACTTA-CTCTCATATATCGAGGCCGATGCCATGTCCTAGGCATGGTCTTACACTGGCT
62 GTCTTACAC-TAGCTCT--TGTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
** *
84025781 CTCATCTGTCGGTGCCGATG
124 CTCATCTGTCAATGCCGATA
*
84025801 CCATGTCCCAGACATGGTCTTACACTGACACATATCAAGCTGATGCCATGTCCTAGACATGGTCT
1 CCATGTCCCAGACATGGTCTTACACTGACACATATCAAGCTGATGCCATGTCCCAGACATGGTCT
84025866 TACACTAGCTCTTGTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACATC
66 TACACTAGCTCTTGTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATC
84025930 T-T-AATGCCGATA
130 TGTCAATGCCGATA
84025942 CCATGTCCCAGACATGGTCTTACACTG
1 CCATGTCCCAGACATGGTCTTACACTG
84025969 GCTCTCATAA
Statistics
Matches: 150, Mismatches: 15, Indels: 13
0.84 0.08 0.07
Matches are distributed among these distances:
141 34 0.23
142 2 0.01
143 44 0.29
144 2 0.01
145 35 0.23
146 8 0.05
147 1 0.01
148 24 0.16
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (143 bp):
CCATGTCCCAGACATGGTCTTACACTGACACATATCAAGCTGATGCCATGTCCCAGACATGGTCT
TACACTAGCTCTTGTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCT
GTCAATGCCGATA
Found at i:84032048 original size:50 final size:49
Alignment explanation
Indices: 84031935--84032245 Score: 201
Period size: 48 Copynumber: 6.6 Consensus size: 49
84031925 AGGGTAAGAT
* * * * * * *
84031935 GCCGACGCCATGTCCCAGGCACGGTCTTTCACTGGCT-TACATAT-CAAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCT-CATATACGAG
* * * *
84031983 GTCGATGTCATGTCCCAGACATGGTCTTACACTTACTCTTATATACCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATA-CGAG
* ** *
84032033 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGTTCTCATCTATCG-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATA-CGAG
* * *
84032082 TGTCGATGCCATATCCCAGACATGGTCTT--AC--A----CATAT-C-AA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATACGAG
* *
84032122 GCCGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCATCTTA--AT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCAT-ATACGAG
* * * * * *
84032170 GCCAATGCCATGTCCCATATATGGTCTTACACTGGCTCTCATA-ATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATACGAG
84032218 GCCGATG-CATGTCCCAGACAT-GTCTTAC
1 GCCGATGCCATGTCCCAGACATGGTCTTAC
84032246 TCTAGCACAC
Statistics
Matches: 205, Mismatches: 40, Indels: 38
0.72 0.14 0.13
Matches are distributed among these distances:
39 26 0.13
40 1 0.00
41 2 0.01
42 5 0.02
46 8 0.04
47 15 0.07
48 80 0.39
49 2 0.01
50 66 0.32
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATACGAG
Found at i:84033515 original size:29 final size:29
Alignment explanation
Indices: 84033473--84033531 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
84033463 AATGTGTTAC
84033473 ATTCGAAAATGAATGTGGTTTTCTCACTA
1 ATTCGAAAATGAATGTGGTTTTCTCACTA
84033502 ATTCGAAAATGAATGTGGTTTTCTCACTA
1 ATTCGAAAATGAATGTGGTTTTCTCACTA
84033531 A
1 A
84033532 GTATGGAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (29 bp):
ATTCGAAAATGAATGTGGTTTTCTCACTA
Found at i:84033737 original size:16 final size:17
Alignment explanation
Indices: 84033709--84033740 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
84033699 TTAGAATTAG
84033709 ATTGAGAAAATTATTTA
1 ATTGAGAAAATTATTTA
84033726 ATTGAG-AAATTATTT
1 ATTGAGAAAATTATTT
84033741 TTTAAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (17 bp):
ATTGAGAAAATTATTTA
Found at i:84034659 original size:45 final size:45
Alignment explanation
Indices: 84034608--84034705 Score: 171
Period size: 45 Copynumber: 2.2 Consensus size: 45
84034598 ATACTTAACT
* *
84034608 TTTAATTAAACTACTAATCACTAATTTAATGGTTATTGTTCTTCC
1 TTTAATTAAACTACTAATCACTAATATAATGGTTATTATTCTTCC
84034653 TTTAATTAAACTACTAATCACTAATATAATGGTTATTATTCTTCC
1 TTTAATTAAACTACTAATCACTAATATAATGGTTATTATTCTTCC
84034698 -TTAATTAA
1 TTTAATTAA
84034706 GCAAGTCGGA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
44 8 0.16
45 43 0.84
ACGTcount: A:0.35, C:0.14, G:0.05, T:0.46
Consensus pattern (45 bp):
TTTAATTAAACTACTAATCACTAATATAATGGTTATTATTCTTCC
Found at i:84036675 original size:19 final size:20
Alignment explanation
Indices: 84036638--84036678 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
84036628 TTTTGTACGC
84036638 TTTTCCTTTTTCTGAATGAT
1 TTTTCCTTTTTCTGAATGAT
84036658 TTTTCCTGTTTT-TG-ATGAT
1 TTTTCCT-TTTTCTGAATGAT
84036677 TT
1 TT
84036679 GTTTGTATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 9 0.45
21 4 0.20
ACGTcount: A:0.12, C:0.12, G:0.12, T:0.63
Consensus pattern (20 bp):
TTTTCCTTTTTCTGAATGAT
Found at i:84042967 original size:19 final size:19
Alignment explanation
Indices: 84042901--84042971 Score: 72
Period size: 19 Copynumber: 3.8 Consensus size: 19
84042891 CACGCAAAGT
* * *
84042901 GCATACTAA-CGCATACTA
1 GCATACGAAGCGCATATTG
* *
84042919 GCACACGAAGCACATATTG
1 GCATACGAAGCGCATATTG
* *
84042938 GCGTACAAAGCGCATATTG
1 GCATACGAAGCGCATATTG
84042957 GCATACGAAGCGCAT
1 GCATACGAAGCGCAT
84042972 CCTGGCACAC
Statistics
Matches: 41, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
18 7 0.17
19 34 0.83
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.18
Consensus pattern (19 bp):
GCATACGAAGCGCATATTG
Found at i:84042977 original size:19 final size:19
Alignment explanation
Indices: 84042945--84042993 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
84042935 TTGGCGTACA
** *
84042945 AAGCGCATATTGGCATACG
1 AAGCGCATCCTGGCACACG
84042964 AAGCGCATCCTGGCACACG
1 AAGCGCATCCTGGCACACG
* *
84042983 AGGTGCATCCT
1 AAGCGCATCCT
84042994 AGGGCATAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.27, T:0.18
Consensus pattern (19 bp):
AAGCGCATCCTGGCACACG
Found at i:84046848 original size:16 final size:16
Alignment explanation
Indices: 84046827--84046864 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
84046817 CTTGTAGAAG
84046827 ATTGATCCACCTTTCA
1 ATTGATCCACCTTTCA
84046843 ATTGATCCACCTTTCA
1 ATTGATCCACCTTTCA
84046859 ATTGAT
1 ATTGAT
84046865 TAAATAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.08, T:0.39
Consensus pattern (16 bp):
ATTGATCCACCTTTCA
Found at i:84048258 original size:68 final size:68
Alignment explanation
Indices: 84048142--84048276 Score: 180
Period size: 68 Copynumber: 2.0 Consensus size: 68
84048132 CCTATAAGAC
* * * * ** *
84048142 TGTAAGACCATGGTTAGGCTATGGCAACATATGAAGTCCGCCAGGACAGTAAACATGTCATCATA
1 TGTAAGACCATAGCTAGGCTATGGAAACATACGAAGTCCGAAAGGACAGTAAACATGGCATCATA
84048207 TAG
66 TAG
* * *
84048210 TGTAAGACCATAGCTAGGTTATGGAAACATACGAAGTCTGAAATGACAGTAAACATGGCATCATA
1 TGTAAGACCATAGCTAGGCTATGGAAACATACGAAGTCCGAAAGGACAGTAAACATGGCATCATA
84048275 TA
66 TA
84048277 TGATCGCGAG
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
68 57 1.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (68 bp):
TGTAAGACCATAGCTAGGCTATGGAAACATACGAAGTCCGAAAGGACAGTAAACATGGCATCATA
TAG
Found at i:84053415 original size:55 final size:55
Alignment explanation
Indices: 84053355--84053476 Score: 129
Period size: 55 Copynumber: 2.2 Consensus size: 55
84053345 GTTCAAGCTC
* * * *
84053355 CACGCCCGTGTTAAGT-TAACAGGTTCGACCACGGGTGTTAGACACGGGCGTGTCG
1 CACGCCCGTGTTAA-TATAACAGGTTCAACCACGGGTCTTACACACGGGCGTGTCA
* * *** * *
84053410 CACGCCCTTGCTAATATTTGAGTTTCAACCACGGGTCTTCCACACGGGCGTGTCA
1 CACGCCCGTGTTAATATAACAGGTTCAACCACGGGTCTTACACACGGGCGTGTCA
84053465 CACGCCCGTGTT
1 CACGCCCGTGTT
84053477 GTTTTGGCAG
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
54 1 0.02
55 52 0.98
ACGTcount: A:0.19, C:0.30, G:0.27, T:0.25
Consensus pattern (55 bp):
CACGCCCGTGTTAATATAACAGGTTCAACCACGGGTCTTACACACGGGCGTGTCA
Found at i:84068576 original size:18 final size:18
Alignment explanation
Indices: 84068553--84068588 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
84068543 ATAAATATCC
84068553 TTATTTAATATGTACGAA
1 TTATTTAATATGTACGAA
84068571 TTATTTAATATGTACGAA
1 TTATTTAATATGTACGAA
84068589 CTCAGTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44
Consensus pattern (18 bp):
TTATTTAATATGTACGAA
Found at i:84071455 original size:38 final size:38
Alignment explanation
Indices: 84071407--84071720 Score: 466
Period size: 38 Copynumber: 8.3 Consensus size: 38
84071397 GGCTCAAAGG
* * *
84071407 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
84071445 CCCGGATATAATACCAGCATGAAACCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
84071483 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
84071521 CCCAGATATAATACCAACACGAAGCCTGCAGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
84071559 CCCGGATATAATACCAGCACGAAGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
84071597 CCCAGACATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
84071635 CCCGGATATAATACCAGCACGAAGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * **
84071673 CCCGGATATAATACCAGAATGAAGCCTAAGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
84071711 CCCGGATATA
1 CCCGGATATA
84071721 CATCAAATAT
Statistics
Matches: 248, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 248 1.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.20
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:84074767 original size:27 final size:26
Alignment explanation
Indices: 84074713--84075106 Score: 101
Period size: 27 Copynumber: 14.7 Consensus size: 26
84074703 TTAGTTTACC
* * *
84074713 AAATTACTGAAATACCCCC-AGTTGTA
1 AAATTAC-CAAATACCCCCGATTTATA
*
84074739 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAA-TACCCCCGATTTATA
* * *
84074766 AAACTACCCAAATATCCTCGATTTATA
1 AAATTA-CCAAATACCCCCGATTTATA
* ** * * *
84074793 GAATTACCGATTTACCCTCAATTTACA
1 AAATTACC-AAATACCCCCGATTTATA
* *** *
84074820 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACC-AAATACCCCCGATTTATA
* ** *
84074847 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCA-AATACCCCCGATTTATA
* **** *
84074874 GAATTATCGTTTTACCCTCGATTTATA
1 AAATTA-CCAAATACCCCCGATTTATA
* ** *
84074901 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCA-AATACCCCCGATTTATA
* *** * *
84074928 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACC-AAATACCCCCGATTTATA
* ** * *
84074955 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTAC-CAAATACCCCCGATTTATA
* * *
84074982 AAATTAACAAAATACCCTCGA-TCAGTA
1 AAATT-ACCAAATACCCCCGATTTA-TA
* * * *
84075009 AAATTACCAAAATACCTCTGGTTTGTA
1 AAATTACC-AAATACCCCCGATTTATA
* * * *
84075036 AAATTACTAAAATACCCCTGGTTTGTA
1 AAATTAC-CAAATACCCCCGATTTATA
*** *
84075063 AAATTACCAGAATACCATTGATTTGTA
1 AAATTACCA-AATACCCCCGATTTATA
84075090 AAA-TACCGAAATACCCC
1 AAATTACC-AAATACCCC
84075107 TGTAGGGTAG
Statistics
Matches: 301, Mismatches: 51, Indels: 32
0.78 0.13 0.08
Matches are distributed among these distances:
25 3 0.01
26 32 0.11
27 257 0.85
28 9 0.03
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.33
Consensus pattern (26 bp):
AAATTACCAAATACCCCCGATTTATA
Found at i:84074866 original size:81 final size:81
Alignment explanation
Indices: 84074781--84074961 Score: 290
Period size: 81 Copynumber: 2.2 Consensus size: 81
84074771 ACCCAAATAT
*
84074781 CCTCGATTTATAGAATTACCGATTTACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTAT
1 CCTCGATTTATAGAATTACCGATTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTAT
84074846 AGAATTACCATTTTAC
66 AGAATTACCATTTTAC
* * * *
84074862 CCTCGATTTATAGAATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTAT
1 CCTCGATTTATAGAATTACCGATTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTAT
*
84074927 AGAATTACCGTTTTAC
66 AGAATTACCATTTTAC
* *
84074943 CCTCGATTTACAAAATTAC
1 CCTCGATTTATAGAATTAC
84074962 TAAAATACCC
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 91 1.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (81 bp):
CCTCGATTTATAGAATTACCGATTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTAT
AGAATTACCATTTTAC
Found at i:84074972 original size:54 final size:54
Alignment explanation
Indices: 84074781--84074961 Score: 301
Period size: 54 Copynumber: 3.4 Consensus size: 54
84074771 ACCCAAATAT
* *
84074781 CCTCGATTTATAGAATTACCGA-TTTACCCTCAATTTACAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACC-ATTTTACCCTCGATTTATAGAATTACCGTTTTAC
*
84074835 CCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTAC
1 CCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTAC
84074889 CCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTAC
* *
84074943 CCTCGATTTACAAAATTAC
1 CCTCGATTTATAGAATTAC
84074962 TAAAATACCC
Statistics
Matches: 120, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
53 1 0.01
54 119 0.99
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (54 bp):
CCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTAC
Found at i:84074998 original size:54 final size:54
Alignment explanation
Indices: 84074940--84075052 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 54
84074930 ATTACCGTTT
* *
84074940 TACCCTCGATTTA-CAAAATTACTAAAATACC-CTTGGTTTACAAAATTAAC-AAAA
1 TACCCTCGA-TCAGCAAAATTACCAAAATACCTC-TGGTTTACAAAATT-ACTAAAA
* **
84074994 TACCCTCGATCAGTAAAATTACCAAAATACCTCTGGTTTGTAAAATTACTAAAA
1 TACCCTCGATCAGCAAAATTACCAAAATACCTCTGGTTTACAAAATTACTAAAA
84075048 TACCC
1 TACCC
84075053 CTGGTTTGTA
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
53 4 0.08
54 46 0.90
55 1 0.02
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (54 bp):
TACCCTCGATCAGCAAAATTACCAAAATACCTCTGGTTTACAAAATTACTAAAA
Found at i:84074998 original size:81 final size:81
Alignment explanation
Indices: 84074832--84075003 Score: 195
Period size: 81 Copynumber: 2.1 Consensus size: 81
84074822 ATTACCGTTT
* * **
84074832 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTAATACCCTCGATT
* * * ***
84074897 TATAGAATTACCATTT
66 TACAAAATTAACAAAA
* * *
84074913 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTA-C-TAAAATACCCTTGG
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGT--AATACCCTCGA
84074976 TTTACAAAATTAACAAAA
64 TTTACAAAATTAACAAAA
84074994 TACCCTCGAT
1 TACCCTCGAT
84075004 CAGTAAAATT
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.01
80 1 0.01
81 74 0.97
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTAATACCCTCGATT
TACAAAATTAACAAAA
Done.