Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 259 of 325
Found at i:84391453 original size:42 final size:42
Alignment explanation
Indices: 84391394--84391485 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
84391384 TAGTCTCCCC
* ** *
84391394 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
84391436 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
84391478 AAATGGGC
1 AAATGGGC
84391486 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:84408296 original size:19 final size:19
Alignment explanation
Indices: 84408259--84408296 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
84408249 ACCTATCAGA
*
84408259 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
84408278 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
84408297 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:84419458 original size:83 final size:84
Alignment explanation
Indices: 84419322--84419534 Score: 234
Period size: 83 Copynumber: 2.5 Consensus size: 84
84419312 CTTTGTGACG
* * ** * ***
84419322 AACTACGAAAGAATAAGTCTTTGTGGCGAACTATGAAAGAATAAGATTTTGTGGAGAACTATGAA
1 AACTATGAAAGAATAAGACCCTGTGGTGAACTATGAAAGAATAAGCGCTTGTGGAGAACTATGAA
* **
84419387 ACAATAAG-CCTTTATGGTG
66 ACAAAAAGACC-TTATGGCA
* * *
84419406 AACTATGAAATAATAA-ACTCCTGT-GTGAACTATGAAAGATTAAGCGCTTGTGGCGAACTATGA
1 AACTATGAAAGAATAAGAC-CCTGTGGTGAACTATGAAAGAATAAGCGCTTGTGGAGAACTATGA
*
84419469 AACAAAAAGACCTTGTGGCA
65 AACAAAAAGACCTTATGGCA
* *
84419489 AACTATGAAAGAATAAGACCTTGTGGTGAACTATGAAAGACTAAGC
1 AACTATGAAAGAATAAGACCCTGTGGTGAACTATGAAAGAATAAGC
84419535 CCTTATTGTT
Statistics
Matches: 107, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
83 66 0.62
84 41 0.38
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.25
Consensus pattern (84 bp):
AACTATGAAAGAATAAGACCCTGTGGTGAACTATGAAAGAATAAGCGCTTGTGGAGAACTATGAA
ACAAAAAGACCTTATGGCA
Found at i:84419538 original size:28 final size:28
Alignment explanation
Indices: 84419300--84419566 Score: 223
Period size: 28 Copynumber: 9.6 Consensus size: 28
84419290 AACACGTTAG
* * ** *
84419300 GAAAGAACAAGCCTTTGTGACGAACTAC
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
* * *
84419328 GAAAGAATAAGTCTTTGTGGCGAACTAT
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
*** *
84419356 GAAAGAATAAGATTTTGTGGAGAACTAT
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
* * *
84419384 GAAACAATAAGCCTTTATGGTGAACTAT
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
* *
84419412 GAAATAATAAACTCC-TGT-GTGAACTAT
1 GAAAGAATAAGC-CCTTGTGGTGAACTAT
* * *
84419439 GAAAGATTAAGCGCTTGTGGCGAACTAT
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
* * * **
84419467 GAAACAAAAAGACCTTGTGGCAAACTAT
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
*
84419495 GAAAGAATAAGACCTTGTGGTGAACTAT
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
* * * *
84419523 GAAAGACTAAGCCCTTATTGTTAACTAT
1 GAAAGAATAAGCCCTTGTGGTGAACTAT
* *
84419551 CAAAGATTAAGCCCTT
1 GAAAGAATAAGCCCTT
84419567 ATGGCGACTT
Statistics
Matches: 198, Mismatches: 38, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 21 0.11
28 175 0.88
29 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.26
Consensus pattern (28 bp):
GAAAGAATAAGCCCTTGTGGTGAACTAT
Found at i:84424112 original size:24 final size:24
Alignment explanation
Indices: 84424085--84424182 Score: 133
Period size: 24 Copynumber: 4.0 Consensus size: 24
84424075 AAGGCTGTCA
*
84424085 GGAGAAGATTTAGGAGCTGGTAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
84424109 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* ** *
84424133 GGAGAGGATTTAGGAAATGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
84424157 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
84424182 G
1 G
84424183 AGCAGGAGTT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
24 61 0.95
25 3 0.05
ACGTcount: A:0.37, C:0.04, G:0.39, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:84432031 original size:24 final size:24
Alignment explanation
Indices: 84432004--84432101 Score: 169
Period size: 24 Copynumber: 4.0 Consensus size: 24
84431994 AAGGCTGTCA
84432004 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
84432028 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
84432052 GGAGAAGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
84432076 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
84432101 G
1 G
84432102 AGCAGGAGTT
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
24 66 0.96
25 3 0.04
ACGTcount: A:0.37, C:0.05, G:0.38, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:84448198 original size:14 final size:14
Alignment explanation
Indices: 84448179--84448207 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
84448169 CCCAAGGTGT
84448179 AGCCACAATTCGAG
1 AGCCACAATTCGAG
84448193 AGCCACAATTCGAG
1 AGCCACAATTCGAG
84448207 A
1 A
84448208 TTTACGTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.28, G:0.21, T:0.14
Consensus pattern (14 bp):
AGCCACAATTCGAG
Found at i:84451094 original size:40 final size:40
Alignment explanation
Indices: 84450999--84451106 Score: 137
Period size: 40 Copynumber: 2.6 Consensus size: 40
84450989 CGAATTCTCA
* * *
84450999 CACACTAAGTGCCAATACATAGCTGAATCTATTTCAATCCCG
1 CACACTAAGTGCC-ATACATAGCCGAAGCTATTACAAT-CCG
* *
84451041 CACACTAAATGCCATACATAGCCGAAGCTATCTAGAAT-CG
1 CACACTAAGTGCCATACATAGCCGAAGCTAT-TACAATCCG
84451081 CACACTAAGTGCCATACATAGCCGAA
1 CACACTAAGTGCCATACATAGCCGAA
84451107 TTATCATCAA
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
40 27 0.46
41 16 0.27
42 16 0.27
ACGTcount: A:0.36, C:0.29, G:0.14, T:0.21
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATTACAATCCG
Found at i:84456844 original size:39 final size:39
Alignment explanation
Indices: 84456785--84456864 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
84456775 CCTCTCCTCC
84456785 CTGGCTACCCGTTACAAGTCTAGAATCAGACGGTGCTAT
1 CTGGCTACCCGTTACAAGTCTAGAATCAGACGGTGCTAT
*
84456824 CTGGCTACCCGTTACGAGTCTAGAATCAGACGGTGCTAT
1 CTGGCTACCCGTTACAAGTCTAGAATCAGACGGTGCTAT
84456863 CT
1 CT
84456865 CTTCAATGGG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
CTGGCTACCCGTTACAAGTCTAGAATCAGACGGTGCTAT
Found at i:84458791 original size:31 final size:31
Alignment explanation
Indices: 84458756--84458819 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
84458746 TCACCAGTGA
* *
84458756 TAGGCAATGTAATTCATTTGCAATAGTGGTC
1 TAGGCAATGTAATTCATTGGCAATAGTCGTC
84458787 TAGGCAATGTAATTCATTGGCAATAGTCGTC
1 TAGGCAATGTAATTCATTGGCAATAGTCGTC
84458818 TA
1 TA
84458820 CTCTGGACCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (31 bp):
TAGGCAATGTAATTCATTGGCAATAGTCGTC
Found at i:84461564 original size:54 final size:54
Alignment explanation
Indices: 84461385--84461575 Score: 217
Period size: 55 Copynumber: 3.5 Consensus size: 54
84461375 TTACCATTGT
* ** *
84461385 CATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-GAACTCA-CTAATGC
1 CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATC-AATGC
* * **
84461438 CATGCCTTGGCATTGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAATGC
1 CATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAATGC
* * * *
84461493 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCATATAGAACTTATCAATGC
1 CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGC
*
84461547 CATGCCTTGGCATGGTCTTACATGATATC
1 CATGCCTTGACATGGTCTTACATGATATC
84461576 TTTATCTTAC
Statistics
Matches: 116, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.02
53 30 0.26
54 39 0.34
55 42 0.36
56 3 0.03
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGC
Found at i:84461612 original size:47 final size:47
Alignment explanation
Indices: 84461557--84461678 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
84461547 CATGCCTTGG
* * *
84461557 CATGGTCTTACATGATATCTTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
84461604 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
84461651 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
84461679 GTGCCAATGC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:84468236 original size:54 final size:54
Alignment explanation
Indices: 84468056--84468249 Score: 212
Period size: 55 Copynumber: 3.6 Consensus size: 54
84468046 TTACCATTGT
* * * * * * * *
84468056 CATGTCTTGACATGGCCTTACGTGGTATCTTTGCGTTAT-GAACTCACCAATGC
1 CATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGC
** *
84468109 CATGCCTTGGCATGGTCTTACATGGGA-CCTTTGTCTTATAGTAACTCATCAATGC
1 CATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAATGC
* ** * *
84468164 CATGTCTTAACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGC
1 CATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGC
84468218 CATGCCTTGGCATGGTCTTACATGATATCCTT
1 CATGCCTTGGCATGGTCTTACATGATATCCTT
84468250 ATCTTACCAA
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
52 1 0.01
53 29 0.25
54 41 0.35
55 43 0.37
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
CATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGC
Found at i:84468255 original size:109 final size:108
Alignment explanation
Indices: 84468056--84468255 Score: 267
Period size: 109 Copynumber: 1.8 Consensus size: 108
84468046 TTACCATTGT
* * * * *
84468056 CATGTCTTGACATGGCCTTACGTGGTATCTTTGCGTTATGAACTCACCAATGCCATGCCTTGGCA
1 CATGTCTTAACATGGCCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCA
* *
84468121 TGGTCTTACATGGGACCTTTGTCTTATAGTAACTCATCAATGC
66 TGGTCTTACATGAGACCTTTATCTTATAGTAACTCATCAATGC
* * * *
84468164 CATGTCTTAACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGC
1 CATGTCTTAACATGGCCTTACATGATATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGC
*
84468229 ATGGTCTTACATGATATCC-TTATCTTA
65 ATGGTCTTACATGAGA-CCTTTATCTTA
84468256 CCAAATGTCA
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
108 32 0.41
109 44 0.56
110 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (108 bp):
CATGTCTTAACATGGCCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCA
TGGTCTTACATGAGACCTTTATCTTATAGTAACTCATCAATGC
Found at i:84468281 original size:47 final size:47
Alignment explanation
Indices: 84468228--84468348 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
84468218 CATGCCTTGG
* *
84468228 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
84468275 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
84468322 CATGATCTTACAT-AGTATCCTTGTCTT
1 CATGGTCTTACATGA-TATCCTTGTCTT
84468349 GGTGCCAATG
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:84468429 original size:53 final size:45
Alignment explanation
Indices: 84468398--84468487 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
84468388 CCTTAATCAA
84468398 TGCCAATGCCAATGCCATGTCTTGACATGGTCTTACATGGGATCCT
1 TGCC-ATGCCAATGCCATGTCTTGACATGGTCTTACATGGGATCCT
* * *
84468444 TGCCCTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC
1 TGCCATGCCAATGCCATGTCTTGACATGGTCTTACATGGGATCC
84468488 CTAACCGTCA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 37 0.90
46 4 0.10
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.31
Consensus pattern (45 bp):
TGCCATGCCAATGCCATGTCTTGACATGGTCTTACATGGGATCCT
Found at i:84473419 original size:19 final size:18
Alignment explanation
Indices: 84473385--84473431 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 18
84473375 TTTTTATCAT
84473385 TTATCATTTA-TCAGGCA
1 TTATCATTTATTCAGGCA
84473402 TTATCATTTATTTCAGGCA
1 TTATCATTTA-TTCAGGCA
*
84473421 TTATCACTTAT
1 TTATCATTTAT
84473432 CGGGCTTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 10 0.37
18 1 0.04
19 16 0.59
ACGTcount: A:0.28, C:0.17, G:0.09, T:0.47
Consensus pattern (18 bp):
TTATCATTTATTCAGGCA
Found at i:84473855 original size:9 final size:9
Alignment explanation
Indices: 84473841--84473865 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
84473831 TATATTCTAT
84473841 AAATTTTAG
1 AAATTTTAG
84473850 AAATTTTAG
1 AAATTTTAG
84473859 AAATTTT
1 AAATTTT
84473866 CTCAACTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (9 bp):
AAATTTTAG
Found at i:84488945 original size:39 final size:39
Alignment explanation
Indices: 84488864--84489083 Score: 314
Period size: 39 Copynumber: 5.6 Consensus size: 39
84488854 AACATGTTTT
* *
84488864 TGAGTATTTTGATATATGCTTAAAATATTATGTGATTATA
1 TGAGTATTGTGATATATGCTT-AAATGTTATGTGATTATA
* *
84488904 TGAGTATTGCGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
84488943 TGAGTATTGTGATAAATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
*
84488982 TGAGTATTGTGATATATACTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
84489021 TGAGTATTGTGACATATGCTTAAATTTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
** * *
84489060 TGCTTAATATGATATATGCTTAAA
1 TGAGTATTGTGATATATGCTTAAA
84489084 AGTGAATATG
Statistics
Matches: 163, Mismatches: 17, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 144 0.88
40 19 0.12
ACGTcount: A:0.32, C:0.04, G:0.19, T:0.45
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:84489092 original size:16 final size:16
Alignment explanation
Indices: 84489056--84489093 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
84489046 TTTATGTGAT
*
84489056 TATATGCTTAATATGA
1 TATATGCTTAAAATGA
84489072 TATATGCTTAAAAGTGA
1 TATATGCTTAAAA-TGA
84489089 -ATATG
1 TATATG
84489094 ATTACCATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 17 0.85
17 3 0.15
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.39
Consensus pattern (16 bp):
TATATGCTTAAAATGA
Found at i:84489969 original size:68 final size:68
Alignment explanation
Indices: 84489860--84489996 Score: 238
Period size: 68 Copynumber: 2.0 Consensus size: 68
84489850 TCAGTTTTGA
* * * *
84489860 GATTTTGCTGAGTGGACCTTATACATGTTTAATTATTATTACAAGAATATTTGATGTATGTTCAG
1 GATTTTGCTAAATGGACCTTATACATGTTTAATTATTATTACAAGAATATCTAATGTATGTTCAG
84489925 CAT
66 CAT
84489928 GATTTTGCTAAATGGACCTTATACATGTTTAATTATTATTACAAGAATATCTAATGTATGTTCAG
1 GATTTTGCTAAATGGACCTTATACATGTTTAATTATTATTACAAGAATATCTAATGTATGTTCAG
84489993 CAT
66 CAT
84489996 G
1 G
84489997 CAACAATGAT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.42
Consensus pattern (68 bp):
GATTTTGCTAAATGGACCTTATACATGTTTAATTATTATTACAAGAATATCTAATGTATGTTCAG
CAT
Found at i:84509492 original size:20 final size:20
Alignment explanation
Indices: 84509460--84509497 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
84509450 TGTTTCACAT
84509460 TCATATAACTAATATTTATA
1 TCATATAACTAATATTTATA
*
84509480 TCAT-TAACATAATTTTTA
1 TCATATAAC-TAATATTTA
84509498 ACTTAATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (20 bp):
TCATATAACTAATATTTATA
Found at i:84519119 original size:40 final size:41
Alignment explanation
Indices: 84519056--84519276 Score: 287
Period size: 40 Copynumber: 5.6 Consensus size: 41
84519046 TATTCGAATG
* *
84519056 ATATCCGGGCTAAG-TCCCAAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * **
84519096 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTTCT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
84519136 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
84519176 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
84519216 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
84519256 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
84519277 ATACTTGGGT
Statistics
Matches: 159, Mismatches: 16, Indels: 13
0.85 0.09 0.07
Matches are distributed among these distances:
38 1 0.01
39 13 0.08
40 142 0.89
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:84522819 original size:5 final size:5
Alignment explanation
Indices: 84522809--84522835 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
84522799 AATTTTTAAA
84522809 ATTTT ATTTT ATTTT ATTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT AT
84522836 GGTTGACATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:84526234 original size:45 final size:48
Alignment explanation
Indices: 84526180--84526293 Score: 130
Period size: 50 Copynumber: 2.4 Consensus size: 48
84526170 CTCAAGATGA
* *
84526180 AAGA-CATGTTTGGGACATGCATCGGCTAC-GAGATGT-G-TC-AGTGT
1 AAGACCATGTTTGGGACATGCATCGGC-ACGGAGATGTAGAGCTAGCGT
* *
84526224 AAGACCATGTTTGGGACATGGCATTGGCACGGATATGTGAGAGCTAGCGT
1 AAGACCATGTTTGGGACAT-GCATCGGCACGGAGATGT-AGAGCTAGCGT
84526274 AAGACCATGTTTGGGACATG
1 AAGACCATGTTTGGGACATG
84526294 GTGTCGGCCT
Statistics
Matches: 59, Mismatches: 4, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
44 4 0.07
45 16 0.27
46 13 0.22
48 1 0.02
49 2 0.03
50 23 0.39
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.25
Consensus pattern (48 bp):
AAGACCATGTTTGGGACATGCATCGGCACGGAGATGTAGAGCTAGCGT
Found at i:84533761 original size:15 final size:15
Alignment explanation
Indices: 84533741--84533805 Score: 80
Period size: 15 Copynumber: 4.4 Consensus size: 15
84533731 ATAACGTAAA
84533741 TTCAATACTTAATTT
1 TTCAATACTTAATTT
*
84533756 TTCAATACTTATTTT
1 TTCAATACTTAATTT
*
84533771 TTCAATGCTT-ATTT
1 TTCAATACTTAATTT
*
84533785 TTC-ATCATTTAATTT
1 TTCAAT-ACTTAATTT
84533800 TTCAAT
1 TTCAAT
84533806 TTATCAAACA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
13 2 0.05
14 8 0.19
15 30 0.71
16 2 0.05
ACGTcount: A:0.28, C:0.14, G:0.02, T:0.57
Consensus pattern (15 bp):
TTCAATACTTAATTT
Found at i:84533784 original size:29 final size:30
Alignment explanation
Indices: 84533741--84533805 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
84533731 ATAACGTAAA
*
84533741 TTCAATACTTAATTTTTCAAT-ACTTATTTT
1 TTCAATACTTAATTTTTC-ATCACTTAATTT
* *
84533771 TTCAATGCTT-ATTTTTCATCATTTAATTT
1 TTCAATACTTAATTTTTCATCACTTAATTT
84533800 TTCAAT
1 TTCAAT
84533806 TTATCAAACA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 2 0.06
29 20 0.65
30 9 0.29
ACGTcount: A:0.28, C:0.14, G:0.02, T:0.57
Consensus pattern (30 bp):
TTCAATACTTAATTTTTCATCACTTAATTT
Found at i:84534473 original size:19 final size:19
Alignment explanation
Indices: 84534449--84534489 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
84534439 GAGCAGTTGT
84534449 TGGAAGAATGAAAAGAATG
1 TGGAAGAATGAAAAGAATG
*
84534468 TGGAAGAATGGAAAGAATG
1 TGGAAGAATGAAAAGAATG
84534487 TGG
1 TGG
84534490 CTTTATATCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.46, C:0.00, G:0.37, T:0.17
Consensus pattern (19 bp):
TGGAAGAATGAAAAGAATG
Found at i:84537002 original size:40 final size:40
Alignment explanation
Indices: 84536897--84537042 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
84536887 GCTACTCGTT
*
84536897 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
84536937 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
84536977 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
84537018 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84537043 CATCATTCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.03
40 77 0.83
41 13 0.14
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:84547272 original size:27 final size:27
Alignment explanation
Indices: 84547213--84547293 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
84547203 GCTAACACCC
*
84547213 AGCTCGCCAAACAGACTAGAG-AAACTCT
1 AGCTCACCAAACAGACT-G-GCAAACTCT
*
84547241 AGCTCACCAAATAGACTGGCAAACTCT
1 AGCTCACCAAACAGACTGGCAAACTCT
* *
84547268 AGCTCACCAAACAGATTGGCTAACTC
1 AGCTCACCAAACAGACTGGCAAACTC
84547294 GACTTTCAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
26 1 0.02
27 31 0.66
28 15 0.32
ACGTcount: A:0.37, C:0.30, G:0.16, T:0.17
Consensus pattern (27 bp):
AGCTCACCAAACAGACTGGCAAACTCT
Found at i:84551639 original size:26 final size:27
Alignment explanation
Indices: 84551577--84551639 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
84551567 ATTTTATGTT
*
84551577 TTTTTTAAAT-TATGAATTTTTTATAA
1 TTTTTTAAATATAAGAATTTTTTATAA
*
84551603 TTTTTTGAATATAAG-ATATTTTTAT-A
1 TTTTTTAAATATAAGAAT-TTTTTATAA
84551629 TTTTTTAAATA
1 TTTTTTAAATA
84551640 ATTTATTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 22 0.69
27 10 0.31
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (27 bp):
TTTTTTAAATATAAGAATTTTTTATAA
Found at i:84556351 original size:26 final size:26
Alignment explanation
Indices: 84556320--84556371 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
84556310 TTTGAGTTTG
84556320 GCTATGTGCTAAATTTGTTGGATGGT
1 GCTATGTGCTAAATTTGTTGGATGGT
84556346 GCTATGTGCTAAATTTGTTGGATGGT
1 GCTATGTGCTAAATTTGTTGGATGGT
84556372 TGATTGTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.08, G:0.31, T:0.42
Consensus pattern (26 bp):
GCTATGTGCTAAATTTGTTGGATGGT
Found at i:84559514 original size:42 final size:42
Alignment explanation
Indices: 84559453--84559534 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
84559443 CCGTATCAAT
*
84559453 GCCATATCCCGGATATGGTCTTACATGAAAT-ATCATATCGAC
1 GCCATATCCCGGACATGGTCTTACATGAAATCA-CATATCGAC
* * *
84559495 GCCATGTCCCTGACATGGTCTTATATGAAATCACATATCG
1 GCCATATCCCGGACATGGTCTTACATGAAATCACATATCG
84559535 GTACCGTATC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 34 0.97
43 1 0.03
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (42 bp):
GCCATATCCCGGACATGGTCTTACATGAAATCACATATCGAC
Found at i:84561904 original size:24 final size:24
Alignment explanation
Indices: 84561874--84561924 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
84561864 TATAAAGACG
84561874 TCTTATTCTTTAAAAATTATTTTA
1 TCTTATTCTTTAAAAATTATTTTA
84561898 TCTTATTCTTTAAAAATTATTTTA
1 TCTTATTCTTTAAAAATTATTTTA
84561922 TCT
1 TCT
84561925 CTAATTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.59
Consensus pattern (24 bp):
TCTTATTCTTTAAAAATTATTTTA
Found at i:84563960 original size:12 final size:12
Alignment explanation
Indices: 84563943--84563969 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
84563933 CACACGCTCA
84563943 TGTGCTAAGCCG
1 TGTGCTAAGCCG
84563955 TGTGCTAAGCCG
1 TGTGCTAAGCCG
84563967 TGT
1 TGT
84563970 AATAGCCTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.22, G:0.33, T:0.30
Consensus pattern (12 bp):
TGTGCTAAGCCG
Found at i:84564103 original size:12 final size:12
Alignment explanation
Indices: 84564086--84564119 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
84564076 GGACGAAAAT
84564086 AAGCCATTTTAC
1 AAGCCATTTTAC
84564098 AAGCCATTTTAC
1 AAGCCATTTTAC
84564110 AAGCCATTTT
1 AAGCCATTTT
84564120 TCTCACCCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.35
Consensus pattern (12 bp):
AAGCCATTTTAC
Found at i:84566049 original size:16 final size:16
Alignment explanation
Indices: 84566030--84566060 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84566020 CTTCTTCACT
84566030 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
84566046 TACTTACTTACTTAA
1 TACTCACTTACTTAA
84566061 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:84566066 original size:20 final size:20
Alignment explanation
Indices: 84566027--84566066 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
84566017 AAACTTCTTC
* *
84566027 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
84566047 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
84566067 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:84566443 original size:108 final size:110
Alignment explanation
Indices: 84566299--84566496 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
84566289 ATCCTTTTGA
* * *
84566299 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCTA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
84566362 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
84566407 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
84566472 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
84566497 CGGTATCCTT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.60
109 6 0.08
110 25 0.31
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:84566506 original size:55 final size:53
Alignment explanation
Indices: 84566252--84566506 Score: 254
Period size: 55 Copynumber: 4.8 Consensus size: 53
84566242 ACACGGGTAC
* * *
84566252 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
84566301 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * *
84566354 CTCACC-TATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAT-TGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * * * *
84566409 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
84566462 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACC-ATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
84566507 AAACCCTAAT
Statistics
Matches: 168, Mismatches: 24, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
49 39 0.23
52 5 0.03
53 44 0.26
54 9 0.05
55 69 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:84570120 original size:16 final size:16
Alignment explanation
Indices: 84570099--84570138 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
84570089 ATCATTAAAC
84570099 CATTCACAAGTGATTG
1 CATTCACAAGTGATTG
84570115 CATTCACAAGTGATTG
1 CATTCACAAGTGATTG
*
84570131 CATCCACA
1 CATTCACA
84570139 TCATTTTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (16 bp):
CATTCACAAGTGATTG
Found at i:84570587 original size:39 final size:39
Alignment explanation
Indices: 84570516--84570676 Score: 144
Period size: 39 Copynumber: 4.1 Consensus size: 39
84570506 AGTACTGAAA
* * * * * *
84570516 TACAACAGGGGAACATAGGTGCGTTCAAGGGTATCAAAG
1 TACAACAGGGGCACGTAAGTGAGATCAAGGGTACCAAAG
* * *
84570555 TACAACAGGTGCACGTAAGTGTGATCAGGGGTACCGAAA-
1 TACAACAGGGGCACGTAAGTGAGATCAAGGGTACC-AAAG
* **
84570594 CACAGTAGGGGCACGTAAGTGAGATCAAGGGTACCAAAG
1 TACAACAGGGGCACGTAAGTGAGATCAAGGGTACCAAAG
* * * * * *
84570633 TAGAACAGGGGAACGTAAGTGAAATAAATGGTACCGAAG
1 TACAACAGGGGCACGTAAGTGAGATCAAGGGTACCAAAG
84570672 TACAA
1 TACAA
84570677 GAGTTTTCTA
Statistics
Matches: 96, Mismatches: 24, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
38 3 0.03
39 90 0.94
40 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.30, T:0.16
Consensus pattern (39 bp):
TACAACAGGGGCACGTAAGTGAGATCAAGGGTACCAAAG
Found at i:84573953 original size:23 final size:22
Alignment explanation
Indices: 84573899--84573989 Score: 94
Period size: 23 Copynumber: 4.0 Consensus size: 22
84573889 TACCAAGATA
84573899 TCAGCTC-TAAGAGCTTACTATT
1 TCAGCTCGT-AGAGCTTACTATT
* *
84573921 CTCAGTTCGTATGAGCTTACTGTT
1 -TCAGCTCGTA-GAGCTTACTATT
84573945 TCAGCTCGTCAGAGCTTACTATT
1 TCAGCTCGT-AGAGCTTACTATT
* *
84573968 TCAGCTCAATAGAGATTACTAT
1 TCAGCTC-GTAGAGCTTACTAT
84573990 CCATCAGCTC
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
23 44 0.76
24 14 0.24
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.36
Consensus pattern (22 bp):
TCAGCTCGTAGAGCTTACTATT
Found at i:84579736 original size:39 final size:39
Alignment explanation
Indices: 84579693--84579816 Score: 133
Period size: 39 Copynumber: 3.2 Consensus size: 39
84579683 ATTACTGAAA
* *
84579693 TACAACAGGGGCACGCAAGTGTGATCAGGGGTACCGAAG
1 TACAACAGGGGCACGTAAGTGAGATCAGGGGTACCGAAG
* * * ** *
84579732 TACAACAGGGGCACATAAGT-ACGATGAAGGGTGTCGAAA
1 TACAACAGGGGCACGTAAGTGA-GATCAGGGGTACCGAAG
* * *
84579771 TACAACAGGGGCACGTGAGTGAGATTAGGGGTACCAAAG
1 TACAACAGGGGCACGTAAGTGAGATCAGGGGTACCGAAG
84579810 TACAACA
1 TACAACA
84579817 ATTTTCTACT
Statistics
Matches: 67, Mismatches: 16, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
39 66 0.99
40 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.32, T:0.15
Consensus pattern (39 bp):
TACAACAGGGGCACGTAAGTGAGATCAGGGGTACCGAAG
Found at i:84581877 original size:23 final size:23
Alignment explanation
Indices: 84581851--84581900 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
84581841 GATTTCTGAT
84581851 AAATTCAACGGGATTAACATGAG
1 AAATTCAACGGGATTAACATGAG
*
84581874 AAATTCAATGGGATTAACATGAG
1 AAATTCAACGGGATTAACATGAG
84581897 AAAT
1 AAAT
84581901 AAAGATGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (23 bp):
AAATTCAACGGGATTAACATGAG
Found at i:84585106 original size:32 final size:33
Alignment explanation
Indices: 84585044--84585104 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
84585034 TTTTCATACA
84585044 TAATCAAATATTTTTATTTTGAAAATTTTTAAT
1 TAATCAAATATTTTTATTTTGAAAATTTTTAAT
* *
84585077 TAATTAAATA-TTTTATTTT-AAATTTTTT
1 TAATCAAATATTTTTATTTTGAAAATTTTT
84585105 TACTTGTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 8 0.31
32 9 0.35
33 9 0.35
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (33 bp):
TAATCAAATATTTTTATTTTGAAAATTTTTAAT
Found at i:84596743 original size:6 final size:6
Alignment explanation
Indices: 84596725--84596754 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
84596715 GCTAAAAGAA
*
84596725 AATTTT AAGTTT AATTTT AATTTT AATTTT
1 AATTTT AATTTT AATTTT AATTTT AATTTT
84596755 GCAAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (6 bp):
AATTTT
Found at i:84601637 original size:42 final size:41
Alignment explanation
Indices: 84601579--84601732 Score: 175
Period size: 42 Copynumber: 3.7 Consensus size: 41
84601569 TAAGACCATG
* *
84601579 TGTAAGACCATATCTGGGATATGGCATCAATATGAGACTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTCA
* * * * *
84601621 TGTAAGACCATATCTGGGATATGGAATTGATGTAAGTTTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAG-ATTCA
* *
84601663 TGTAAGACCATAGT-TGGGCTAATGGCATCGATACGAGATTACA
1 TGTAAGACCATA-TCTGGGAT-ATGGCATCGATATGAGATT-CA
84601706 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
84601733 TGGTATGGTA
Statistics
Matches: 92, Mismatches: 15, Indels: 10
0.79 0.13 0.09
Matches are distributed among these distances:
42 61 0.66
43 31 0.34
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTCA
Found at i:84601721 original size:85 final size:84
Alignment explanation
Indices: 84601579--84601734 Score: 226
Period size: 85 Copynumber: 1.8 Consensus size: 84
84601569 TAAGACCATG
* *
84601579 TGTAAGACCATATCTGGGATATGGCATCAATATGAGACTTCGTGTAAGACCATATCTGGGATATG
1 TGTAAGACCATATCTGGGATATGGCATCAATACGAGACTTCATGTAAGACCATATCTGGGATATG
84601644 GAATTGATGTAAGTTTTCA
66 GAATTGATGTAAGTTTTCA
* *
84601663 TGTAAGACCATAGT-TGGGCTAATGGCATCGATACGAGA-TTACATGTAAGACCATATCTGGGAT
1 TGTAAGACCATA-TCTGGGAT-ATGGCATCAATACGAGACTT-CATGTAAGACCATATCTGGGAT
*
84601726 ATGGCATTG
63 ATGGAATTG
84601735 GTATGGTACC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
84 19 0.30
85 45 0.70
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (84 bp):
TGTAAGACCATATCTGGGATATGGCATCAATACGAGACTTCATGTAAGACCATATCTGGGATATG
GAATTGATGTAAGTTTTCA
Found at i:84607267 original size:24 final size:24
Alignment explanation
Indices: 84607235--84607298 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
84607225 TGGCTTGGAG
*
84607235 GAGCTTACCATTTACAGCTCATAA
1 GAGCATACCATTTACAGCTCATAA
* * * *
84607259 GAGCATACCATTCAAAGCTCGTAT
1 GAGCATACCATTTACAGCTCATAA
*
84607283 GAGCATA-CATGTACAG
1 GAGCATACCATTTACAG
84607299 GAATTGATGG
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 6 0.19
24 26 0.81
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.25
Consensus pattern (24 bp):
GAGCATACCATTTACAGCTCATAA
Found at i:84612321 original size:39 final size:39
Alignment explanation
Indices: 84612267--84612435 Score: 293
Period size: 39 Copynumber: 4.3 Consensus size: 39
84612257 TAATGGAGAA
*
84612267 TTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
84612306 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
84612345 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGCG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
84612384 TTATATCCGGGCTAAGCCCCGAAAGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
84612423 TTATATCCGGGCT
1 TTATATCCGGGCT
84612436 TAAAGTCCGG
Statistics
Matches: 124, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 124 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:84613068 original size:43 final size:43
Alignment explanation
Indices: 84613007--84613094 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
84612997 TGGTTATAAG
84613007 ATAAAAATTATATTCTTAGACTTCTTAATGAGTCTAGTTTCAA
1 ATAAAAATTATATTCTTAGACTTCTTAATGAGTCTAGTTTCAA
84613050 ATAAAAATTATATTCTTAGACTTCTTAATGAGTCTAGTTTCAA
1 ATAAAAATTATATTCTTAGACTTCTTAATGAGTCTAGTTTCAA
84613093 AT
1 AT
84613095 GAAATAAACA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.42
Consensus pattern (43 bp):
ATAAAAATTATATTCTTAGACTTCTTAATGAGTCTAGTTTCAA
Found at i:84616714 original size:79 final size:81
Alignment explanation
Indices: 84616578--84616760 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
84616568 TCGAATGATG
* *
84616578 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
84616642 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
84616657 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
84616719 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
84616737 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
84616761 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:84616776 original size:40 final size:41
Alignment explanation
Indices: 84616578--84616762 Score: 231
Period size: 40 Copynumber: 4.6 Consensus size: 41
84616568 TCGAATGATG
* * *
84616578 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
84616618 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
84616658 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
84616697 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
84616738 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84616763 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 35 0.28
40 82 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:84616785 original size:79 final size:79
Alignment explanation
Indices: 84616631--84616785 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
84616621 GGACTAAGAT
* **
84616631 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
84616696 ATCCGGGTTAAGTC
66 ATCCGAGTTAAGTC
* *
84616710 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
84616773 TATATCC-AGTTAA
63 TAAATCCGAGTTAA
84616786 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGAGTTAAGTC
Found at i:84618204 original size:5 final size:5
Alignment explanation
Indices: 84618194--84618223 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
84618184 TAACAAGATG
84618194 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
84618224 TTGAAATGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:84621889 original size:39 final size:39
Alignment explanation
Indices: 84621833--84621962 Score: 217
Period size: 39 Copynumber: 3.3 Consensus size: 39
84621823 TAATGGAGAA
84621833 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
84621872 TTATATCCGGGCCAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
84621911 TTATATCCAGGCTAAG-CCCAGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCC-GAAGGCATTCGTGCTGGTG
84621950 TTATATCCGGGCT
1 TTATATCCGGGCT
84621963 TAAAGTCCAG
Statistics
Matches: 85, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
38 3 0.04
39 82 0.96
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:84626441 original size:27 final size:26
Alignment explanation
Indices: 84626406--84626517 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
84626396 AGCATGGCTG
* *
84626406 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
84626432 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
84626460 CCAGAATAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
84626487 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
84626514 CCAG
1 CCAG
84626518 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.69
28 17 0.23
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:84634266 original size:28 final size:26
Alignment explanation
Indices: 84634210--84634294 Score: 98
Period size: 27 Copynumber: 3.2 Consensus size: 26
84634200 AGCATGGCTG
** *
84634210 CCAGAACAGATAATGTGATAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
84634236 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
84634264 CCAGAATAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
84634291 CCAG
1 CCAG
84634295 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
26 5 0.10
27 30 0.59
28 16 0.31
ACGTcount: A:0.39, C:0.21, G:0.25, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:84641873 original size:28 final size:28
Alignment explanation
Indices: 84641842--84641911 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
84641832 ATATTTTCCT
*
84641842 TCGCACACTTAGTGCTCGA-TAATCAAAC
1 TCGCACACTTAGTGCTC-ATTAACCAAAC
84641870 TCGCACACTTAGTGCTCATTAACCAAAC
1 TCGCACACTTAGTGCTCATTAACCAAAC
*
84641898 TCGCACGCTTAGTG
1 TCGCACACTTAGTG
84641912 AAATTTTCAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 38 0.97
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (28 bp):
TCGCACACTTAGTGCTCATTAACCAAAC
Found at i:84643288 original size:43 final size:42
Alignment explanation
Indices: 84643241--84643377 Score: 120
Period size: 43 Copynumber: 3.2 Consensus size: 42
84643231 TCCCTAACGT
* * *
84643241 GGTCTTACATGTAATTCAATATCGATGCCTTTGTCCCAGACAG
1 GGTCTTACAT-AAATTCAATATCGATGCCTATGTCCCAGACAC
* * *
84643284 GGTCTTACACAAAATT-AGATA-CGATGCCGATGTCCCAGACAT
1 GGTCTTACA-TAAATTCA-ATATCGATGCCTATGTCCCAGACAC
* *
84643326 GATCTTATACATAAATATC-A-ATCGAGGCCTATGTCCCAGACAC
1 GGTC-T-TACATAAAT-TCAATATCGATGCCTATGTCCCAGACAC
84643369 GGTCTTACA
1 GGTCTTACA
84643378 CGATATCTCA
Statistics
Matches: 76, Mismatches: 11, Indels: 16
0.74 0.11 0.16
Matches are distributed among these distances:
41 4 0.05
42 24 0.32
43 43 0.57
44 5 0.07
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (42 bp):
GGTCTTACATAAATTCAATATCGATGCCTATGTCCCAGACAC
Found at i:84643320 original size:42 final size:43
Alignment explanation
Indices: 84643261--84643378 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 43
84643251 GTAATTCAAT
* *
84643261 ATCGATGCCTTTGTCCCAGACAGGGTCTTACACA-AAAT-T-A
1 ATCGATGCCTATGTCCCAGACACGGTCTTACACATAAATATCA
* * * *
84643301 GATACGATGCCGATGTCCCAGACATGATCTTATACATAAATATCA
1 -AT-CGATGCCTATGTCCCAGACACGGTCTTACACATAAATATCA
*
84643346 ATCGAGGCCTATGTCCCAGACACGGTCTTACAC
1 ATCGATGCCTATGTCCCAGACACGGTCTTACAC
84643379 GATATCTCAG
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
41 2 0.03
42 27 0.43
43 30 0.48
44 3 0.05
45 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATCGATGCCTATGTCCCAGACACGGTCTTACACATAAATATCA
Found at i:84644917 original size:39 final size:39
Alignment explanation
Indices: 84644864--84644979 Score: 155
Period size: 39 Copynumber: 3.0 Consensus size: 39
84644854 CTGGACATAT
* *
84644864 TTCCAGCA-AGTAGCCTACGGACCTTAAGTCC-GAGTATAA
1 TTCCAGCACA-TAGCCTGCGGACCCTAAGTCCGGA-TATAA
* *
84644903 TTCTAGCACATAGCCTGCAGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
84644942 TTCCAGCACATAGCCTGCGGACCCTAAGTCTGGATATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
84644980 CATCACTGAA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
39 65 0.96
40 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:84653451 original size:21 final size:22
Alignment explanation
Indices: 84653421--84653466 Score: 85
Period size: 21 Copynumber: 2.1 Consensus size: 22
84653411 TTATACATTG
84653421 ATTTAGTAAATTAGTTTATGAA
1 ATTTAGTAAATTAGTTTATGAA
84653443 ATTT-GTAAATTAGTTTATGAA
1 ATTTAGTAAATTAGTTTATGAA
84653464 ATT
1 ATT
84653467 AGAATATGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (22 bp):
ATTTAGTAAATTAGTTTATGAA
Found at i:84654171 original size:39 final size:39
Alignment explanation
Indices: 84654112--84654203 Score: 141
Period size: 39 Copynumber: 2.4 Consensus size: 39
84654102 GCATGATATT
* *
84654112 TGGAAACATATTCGGGCTTGAGGTCCACAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCACAGGCTACGTGC
*
84654151 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCACAGGCTACGTGC
*
84654190 TGG-AATATATCCGG
1 TGGAAACATATCCGG
84654204 GCCTAAAGTC
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
38 10 0.20
39 39 0.80
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
TGGAAACATATCCGGACTTGAGGTCCACAGGCTACGTGC
Found at i:84654220 original size:39 final size:39
Alignment explanation
Indices: 84654134--84654222 Score: 108
Period size: 39 Copynumber: 2.3 Consensus size: 39
84654124 CGGGCTTGAG
* * * *
84654134 GTCCACAGGCTACGTGCTGGAAACATATCCGGACTTGAG
1 GTCCGCAGGCTACGTGCTGGAAACATATCCGGACCTAAA
* *
84654173 GTCCGCAGGCTACGTGCTGG-AATATATCCGGGCCTAAA
1 GTCCGCAGGCTACGTGCTGGAAACATATCCGGACCTAAA
84654211 GTCCTGCAGGCT
1 GTCC-GCAGGCT
84654223 TTGTGCTAGT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 17 0.40
39 26 0.60
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.21
Consensus pattern (39 bp):
GTCCGCAGGCTACGTGCTGGAAACATATCCGGACCTAAA
Found at i:84659746 original size:23 final size:22
Alignment explanation
Indices: 84659695--84659746 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
84659685 CCTCGTCTTT
*
84659695 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
84659717 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
84659740 TTCTTTT
1 TTCTTTT
84659747 TCAATTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:84659755 original size:12 final size:12
Alignment explanation
Indices: 84659704--84659759 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
84659694 TTTCTTTTGT
84659704 TTCTTTTTCTAAC
1 TTCTTTTTC-AAC
* *
84659717 -TCATTTTC-TC
1 TTCTTTTTCAAC
84659727 TTCTTTCTTCAAC
1 TTCTTT-TTCAAC
*
84659740 TTCTTTTTCAAT
1 TTCTTTTTCAAC
84659752 TTCTTTTT
1 TTCTTTTT
84659760 GTTTCACATT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 1 0.03
11 4 0.11
12 23 0.66
13 7 0.20
ACGTcount: A:0.12, C:0.23, G:0.00, T:0.64
Consensus pattern (12 bp):
TTCTTTTTCAAC
Found at i:84667879 original size:16 final size:16
Alignment explanation
Indices: 84667858--84667890 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
84667848 AAGAGAATTG
84667858 AAAAGAG-GAGAAAAAT
1 AAAAGAGTG-GAAAAAT
84667874 AAAAGAGTGGAAAAAT
1 AAAAGAGTGGAAAAAT
84667890 A
1 A
84667891 GAAAATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.94
17 1 0.06
ACGTcount: A:0.67, C:0.00, G:0.24, T:0.09
Consensus pattern (16 bp):
AAAAGAGTGGAAAAAT
Found at i:84677391 original size:16 final size:16
Alignment explanation
Indices: 84677370--84677400 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84677360 TCTTCTTGTA
84677370 TTTCATGTAATATTTT
1 TTTCATGTAATATTTT
*
84677386 TTTCATGTCATATTT
1 TTTCATGTAATATTT
84677401 CCTTATTACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.10, G:0.06, T:0.61
Consensus pattern (16 bp):
TTTCATGTAATATTTT
Found at i:84679221 original size:37 final size:37
Alignment explanation
Indices: 84679180--84679277 Score: 99
Period size: 37 Copynumber: 2.6 Consensus size: 37
84679170 AAACTCTTAA
* *
84679180 GAGAGCCAATCCAACCAATAACACACCAAAATCTCAT
1 GAGAGCTAATCCAACCAATAACACACCAAAAGCTCAT
* * * *
84679217 GAGAGATAATCC-ACCAGATAACACTCCAGACGCTCAT
1 GAGAGCTAATCCAACCA-ATAACACACCAAAAGCTCAT
* * *
84679254 GAGATCTAATCCATCCGATAACAC
1 GAGAGCTAATCCAACCAATAACAC
84679278 GCCTCGACAC
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
36 4 0.08
37 43 0.88
38 2 0.04
ACGTcount: A:0.41, C:0.31, G:0.12, T:0.16
Consensus pattern (37 bp):
GAGAGCTAATCCAACCAATAACACACCAAAAGCTCAT
Found at i:84713507 original size:5 final size:5
Alignment explanation
Indices: 84713497--84713528 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
84713487 TTGTGTGTTC
84713497 TTTAT TTTAT TTTA- TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
84713529 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:84713516 original size:14 final size:14
Alignment explanation
Indices: 84713497--84713527 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
84713487 TTGTGTGTTC
84713497 TTTATTTTATTTTA
1 TTTATTTTATTTTA
84713511 TTTATTTTATTTTA
1 TTTATTTTATTTTA
84713525 TTT
1 TTT
84713528 TTCACAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:84723787 original size:40 final size:40
Alignment explanation
Indices: 84723706--84723926 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
84723696 AAACCAAGTA
** * *
84723706 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
84723745 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
84723785 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
84723825 CCTTCAGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
84723865 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
84723905 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
84723927 CAATCCGAAT
Statistics
Matches: 168, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 26 0.15
40 142 0.85
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:84728207 original size:10 final size:11
Alignment explanation
Indices: 84728184--84728208 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
84728174 ACAACAATTC
84728184 AAAAACATTAA
1 AAAAACATTAA
84728195 AAAAACATTAA
1 AAAAACATTAA
84728206 AAA
1 AAA
84728209 CAGAATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAACATTAA
Found at i:84730337 original size:24 final size:21
Alignment explanation
Indices: 84730306--84730352 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
84730296 AAATTTTTCA
84730306 TGGAACAGGGTCACACGCCCGTG
1 TGGAACAGGG--ACACGCCCGTG
*
84730329 TGGACACAGGGACACGCTCGTG
1 TGGA-ACAGGGACACGCCCGTG
84730351 TG
1 TG
84730353 CCTTCAACAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 12 0.55
23 4 0.18
24 6 0.27
ACGTcount: A:0.21, C:0.28, G:0.36, T:0.15
Consensus pattern (21 bp):
TGGAACAGGGACACGCCCGTG
Found at i:84736516 original size:40 final size:40
Alignment explanation
Indices: 84736465--84736709 Score: 379
Period size: 40 Copynumber: 6.1 Consensus size: 40
84736455 GGATGATAAT
*
84736465 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
84736504 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
84736544 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
84736585 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
*
84736625 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTATA
* *
84736665 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
84736705 TCCGG
1 TCCGG
84736710 TTAAAGCCCG
Statistics
Matches: 196, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
39 2 0.01
40 191 0.97
41 3 0.02
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA
Found at i:84744783 original size:40 final size:40
Alignment explanation
Indices: 84744537--84744774 Score: 365
Period size: 40 Copynumber: 6.0 Consensus size: 40
84744527 ATTCGGATGA
* *
84744537 TAATTTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAC
*
84744577 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAC
*
84744617 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAC
*
84744657 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAC
*
84744697 T-ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACT-AC
1 TAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGAC
*
84744737 T-ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTG
1 TAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTG
84744775 GCTATATCCA
Statistics
Matches: 189, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
39 4 0.02
40 183 0.97
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAC
Found at i:84763711 original size:43 final size:43
Alignment explanation
Indices: 84763664--84763764 Score: 148
Period size: 43 Copynumber: 2.3 Consensus size: 43
84763654 TTCAATGAAC
* ** * *
84763664 TCGCACACTTAGTGCCAATTAATTAGTTGAAGCTATAATTGCA
1 TCGCACACTTAGTGCCAAATAATTAGCCGAAGATAAAATTGCA
*
84763707 TCGCACACTTAGTGCCAAATAATTAGCCGAAGATAAAATTGTA
1 TCGCACACTTAGTGCCAAATAATTAGCCGAAGATAAAATTGCA
84763750 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
84763765 TATTTACTCA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAAATAATTAGCCGAAGATAAAATTGCA
Found at i:84766015 original size:43 final size:43
Alignment explanation
Indices: 84765954--84766124 Score: 186
Period size: 43 Copynumber: 4.0 Consensus size: 43
84765944 ATTATCGAGA
* * *
84765954 TGTGATTACATGTAAGACCATGTATGGGATATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *
84765997 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTTAA
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAT
* * * *
84766041 T-CGATTACATGTAAGACCCTCTCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * *
84766082 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
84766125 GAGCATAATG
Statistics
Matches: 108, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
41 1 0.01
42 8 0.07
43 96 0.89
44 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:84766111 original size:86 final size:85
Alignment explanation
Indices: 84765957--84766119 Score: 211
Period size: 86 Copynumber: 1.9 Consensus size: 85
84765947 ATCGAGATGT
* * * * * * *
84765957 GATTACATGTAAGACCATGTATGGGATATTGGCATTGTATTGTGATTACATGTAAGACCATGTTT
1 GATTACATGTAAGACCATCTATGGGACAGTGGCATCGTATTGTGATAACATGTAAGACCATATCT
84766022 GGGACATTGGCATCGTTAATC
66 GGGACA-TGGCATCGTTAATC
* *
84766043 GATTACATGTAAGACCCTCTCTGGGACAGTGGCATCG-ATATGTGATAACATGTAAGACCATATC
1 GATTACATGTAAGACCATCTATGGGACAGTGGCATCGTAT-TGTGATAACATGTAAGACCATATC
*
84766107 TGGGATATGGCAT
65 TGGGACATGGCAT
84766120 TGTATGAGCA
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
85 8 0.12
86 58 0.88
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (85 bp):
GATTACATGTAAGACCATCTATGGGACAGTGGCATCGTATTGTGATAACATGTAAGACCATATCT
GGGACATGGCATCGTTAATC
Found at i:84767153 original size:52 final size:52
Alignment explanation
Indices: 84767078--84767197 Score: 204
Period size: 52 Copynumber: 2.3 Consensus size: 52
84767068 ATGAAAAAAG
*
84767078 GAAAAGAAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAA
1 GAAAAGGAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAA
*
84767130 GAAAAGGAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGTAA
1 GAAAAGGAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAA
* *
84767182 GAAAAAGAAGGAAAAA
1 GAAAAGGAAGAAAAAA
84767198 GAGCTTTGAG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 64 1.00
ACGTcount: A:0.50, C:0.10, G:0.23, T:0.17
Consensus pattern (52 bp):
GAAAAGGAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAA
Found at i:84768648 original size:40 final size:40
Alignment explanation
Indices: 84768425--84768681 Score: 306
Period size: 40 Copynumber: 6.5 Consensus size: 40
84768415 CGGATGATAA
* * * *
84768425 CCGGGCTAAGTCCCAAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
84768465 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
84768505 CCAGGCTAAGTCGCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
84768545 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
84768585 CCGGGCTAAGCCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
84768625 CCGGGCTATGTCCCGAAGGCA-TTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
84768664 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
84768682 TACTTGGCTT
Statistics
Matches: 191, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
38 15 0.08
39 14 0.07
40 162 0.85
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:84772127 original size:48 final size:48
Alignment explanation
Indices: 84772065--84772332 Score: 226
Period size: 48 Copynumber: 5.6 Consensus size: 48
84772055 TCCATATGTC
* * * *
84772065 GATGCCAT-ATCCCAGATATGGTCTTATACAAAGC-CTCATATCGGT-GCT
1 GATGCCATGA-CCCAGACATGGTCTTACAC-AAGCACACATATC-ATCGCT
*
84772113 GATGCCATGACCCAGACATGGTCTTACACTAGCACACATATCATCGCT
1 GATGCCATGACCCAGACATGGTCTTACACAAGCACACATATCATCGCT
* **
84772161 GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAT-G-T
1 GATGCCATGACCCAGACATGGTCTTACACAAGCACACATATC-ATCGCT
* ** * * * *
84772208 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATGAACACA
1 -GATGCCATGACCCAGACATGGTCTTACACAAGCACACATATCATCGCT
* * ** * *
84772257 GATGCCATGTCCCAAACATGGTCTTACACTGGCACATATATCA-AG-T
1 GATGCCATGACCCAGACATGGTCTTACACAAGCACACATATCATCGCT
* *
84772303 CGATGCCATGTCCCAAACATGGTCTTACAC
1 -GATGCCATGACCCAGACATGGTCTTACAC
84772333 TGGCTCTTAT
Statistics
Matches: 195, Mismatches: 17, Indels: 17
0.85 0.07 0.07
Matches are distributed among these distances:
47 35 0.18
48 157 0.81
49 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (48 bp):
GATGCCATGACCCAGACATGGTCTTACACAAGCACACATATCATCGCT
Found at i:84772184 original size:96 final size:96
Alignment explanation
Indices: 84772065--84772333 Score: 319
Period size: 96 Copynumber: 2.8 Consensus size: 96
84772055 TCCATATGTC
* * * * **
84772065 GATGCCATATCCCAGATATGGTCTTATACAAAGC-CTCATATCGGTG-CTGATGCCATGACCCAG
1 GATGCCATGTCCCAGACATGGTCTTACAC-AAGCACACATATCAATGTC-GATGCCATGACCCAG
* * *
84772128 ACATGGTCTTACACTAGCACACATATCATCGCT
64 ACATGGTCTTACACTAGCACACATATCAACACA
** *
84772161 GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAATGTCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATCAATGTCGATGCCATGACCCAGAC
* *
84772226 ATGGTCTTACACTGGCACACATATGAACACA
66 ATGGTCTTACACTAGCACACATATCAACACA
* ** * * *
84772257 GATGCCATGTCCCAAACATGGTCTTACACTGGCACATATATCAA-GTCGATGCCATGTCCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATCAATGTCGATGCCATGACCCAGAC
84772321 ATGGTCTTACACT
66 ATGGTCTTACACT
84772334 GGCTCTTATC
Statistics
Matches: 154, Mismatches: 17, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
95 34 0.22
96 119 0.77
97 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATCAATGTCGATGCCATGACCCAGAC
ATGGTCTTACACTAGCACACATATCAACACA
Found at i:84772361 original size:95 final size:96
Alignment explanation
Indices: 84772113--84772380 Score: 342
Period size: 96 Copynumber: 2.8 Consensus size: 96
84772103 TATCGGTGCT
* * * * * * * *
84772113 GATGCCATGACCCAGACATGGTCTTACACTAGCACACATATCATCGCTGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCAACACAGACGCCATGTCCCAAAC
84772178 ATGGTCTTACACTGGCACACATATCAATGTC
66 ATGGTCTTACACTGGCACACATATCAATGTC
* * *
84772209 GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATGAACACAGATGCCATGTCCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCAACACAGACGCCATGTCCCAAAC
*
84772274 ATGGTCTTACACTGGCACATATATCAA-GTC
66 ATGGTCTTACACTGGCACACATATCAATGTC
* ** * * *
84772304 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTTATCTCAATACCA-ACGCCATGTACCAAA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCAACA-CAGACGCCATGTCCCAAA
*
84772368 TATGGTCTTACAC
65 CATGGTCTTACAC
84772381 GGTATCTCAT
Statistics
Matches: 153, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
95 67 0.44
96 86 0.56
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (96 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCAACACAGACGCCATGTCCCAAAC
ATGGTCTTACACTGGCACACATATCAATGTC
Found at i:84772378 original size:48 final size:47
Alignment explanation
Indices: 84772116--84772380 Score: 246
Period size: 48 Copynumber: 5.6 Consensus size: 47
84772106 CGGTGCTGAT
* * * * * * *
84772116 GCCATGACCCAGACATGGTCTTACACTAGCACACATATCATCG-CTGAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCACATATATCA-AGTC-AAC
* * * *
84772164 GCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAATGTCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCACATATATCAA-GTCAAC
* * * ** *
84772212 GCCATGTCCCAGACATGGTCTTACACTGGCACACATATGAACACAGAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCACATATATCAAGTCA-AC
* *
84772260 GCCATGTCCCAAACATGGTCTTACACTGGCACATATATCAAGTCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGGCACATATATCAAGTCAAC
* * *
84772307 GCCATGTCCCAAACATGGTCTTACACTGGCTCTTATCTCAA-TACCAAC
1 GCCATGTCCCAAACATGGTCTTACACTGGCACATATATCAAGT--CAAC
* *
84772355 GCCATGTACCAAATATGGTCTTACAC
1 GCCATGTCCCAAACATGGTCTTACAC
84772381 GGTATCTCAT
Statistics
Matches: 192, Mismatches: 20, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
46 1 0.01
47 41 0.21
48 149 0.78
49 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.25
Consensus pattern (47 bp):
GCCATGTCCCAAACATGGTCTTACACTGGCACATATATCAAGTCAAC
Found at i:84778620 original size:46 final size:45
Alignment explanation
Indices: 84778532--84778705 Score: 136
Period size: 46 Copynumber: 3.8 Consensus size: 45
84778522 ACAACTCATA
* * *
84778532 GCCGATGCATGCCCCGGACATGTCTTACACT-GCCTTATGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCC-T-CGTCTCGAG
* * *
84778578 GCCGATGCATGTCCCGGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-CTCGTCTCGAG
* * * * * * *
84778624 GCCTATGCCATGTCACAGACATGGTATTACACAAGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-CTCGT-CTCGAG
* *
84778672 GACGATGCATGTCTCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
84778706 TCACAATAAC
Statistics
Matches: 103, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
46 53 0.51
47 28 0.27
48 21 0.20
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCCTCGTCTCGAG
Found at i:84785538 original size:51 final size:51
Alignment explanation
Indices: 84785453--84785652 Score: 303
Period size: 51 Copynumber: 3.9 Consensus size: 51
84785443 ATTGATACAC
* * * * *
84785453 AGTGGCCTTCACATGGTACCACCCGTGTAG-CCAAAGCTATTTTATTTACAA
1 AGTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTATATTCACAA
84785504 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAA
*
84785555 AGTGGCCTTCACATAATACCACACTTGTGTCCAAAGCTATTATATTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAA
* * *
84785606 AATGGCCTTCACATAGTACCACACTTGTGTCCGAAGCTATTTTATTC
1 AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
84785653 CTAAGGCTCA
Statistics
Matches: 138, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
50 1 0.01
51 137 0.99
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.30
Consensus pattern (51 bp):
AGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAA
Found at i:84785713 original size:28 final size:28
Alignment explanation
Indices: 84785676--84785769 Score: 115
Period size: 28 Copynumber: 3.5 Consensus size: 28
84785666 GAAAAATTTC
*
84785676 TCACTTAGCACAATGCCATGGACTTATT
1 TCACTTAGCACAATGACATGGACTTATT
*
84785704 TCACTTAGCACATTGACATGGACTTATT
1 TCACTTAGCACAATGACATGGACTTATT
* * *
84785732 TCACTTAG----ATGTCATGGTCTTACT
1 TCACTTAGCACAATGACATGGACTTATT
84785756 TCACTTAGCACAAT
1 TCACTTAGCACAAT
84785770 CTCATATCCT
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
24 20 0.36
28 36 0.64
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (28 bp):
TCACTTAGCACAATGACATGGACTTATT
Found at i:84785753 original size:24 final size:26
Alignment explanation
Indices: 84785692--84785765 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 26
84785682 AGCACAATGC
84785692 CATGGACTTATTTCACTTAGCACATTGA
1 CATGGACTTATTTCACTTAG--CATTGA
*
84785720 CATGGACTTATTTCACTTAG-A-TGT
1 CATGGACTTATTTCACTTAGCATTGA
* *
84785744 CATGGTCTTACTTCACTTAGCA
1 CATGGACTTATTTCACTTAGCA
84785766 CAATCTCATA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
24 20 0.48
25 2 0.05
28 20 0.48
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.38
Consensus pattern (26 bp):
CATGGACTTATTTCACTTAGCATTGA
Found at i:84796924 original size:43 final size:42
Alignment explanation
Indices: 84796863--84797019 Score: 185
Period size: 43 Copynumber: 3.7 Consensus size: 42
84796853 CATACAATTT
* *
84796863 TCGATATGTGTTCTCGTGTAAGACCACGACTGGGACGTTGGCA
1 TCGATATGTGAT-TCGTGTAAGACCACGTCTGGGACGTTGGCA
* * *
84796906 TCGATATGTGATTACGTGTAAGACCATGTGTGGGACATTGGCA
1 TCGATATGTGATT-CGTGTAAGACCACGTCTGGGACGTTGGCA
*
84796949 TCG-TATTTGATTCGTGTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCGATATGTGATTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCA
*
84796990 TCGATATGTGATTGCATGTAAGACCACGTC
1 TCGATATGTGATT-CGTGTAAGACCACGTC
84797020 CGGTACATTG
Statistics
Matches: 97, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
41 27 0.28
42 17 0.18
43 52 0.54
44 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (42 bp):
TCGATATGTGATTCGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:84797028 original size:84 final size:84
Alignment explanation
Indices: 84796876--84797029 Score: 213
Period size: 84 Copynumber: 1.8 Consensus size: 84
84796866 ATATGTGTTC
* * **
84796876 TCGTGTAAGACCACGACTGGGACGTTGGCATCGATATGTGATTACGTGTAAGACCATGTGTGGGA
1 TCGTGTAAGACCACGACTGGGACGTTGGCATCGATATGTGATTACATGTAAGACCACGTCCGGGA
84796941 CATTGGCATCGTATTTGAT
66 CATTGGCATCGTATTTGAT
* *
84796960 TCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGATTGCATGTAAGACCACGTCCGG
1 TCGTGTAAGACCAC-GACTGGGAC-GTTGGCATCGATATGTGATTACATGTAAGACCACGTCCGG
*
84797023 TACATTG
64 GACATTG
84797030 ACATTGTACG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
83 1 0.02
84 59 0.97
85 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (84 bp):
TCGTGTAAGACCACGACTGGGACGTTGGCATCGATATGTGATTACATGTAAGACCACGTCCGGGA
CATTGGCATCGTATTTGAT
Found at i:84799714 original size:51 final size:50
Alignment explanation
Indices: 84799638--84799785 Score: 181
Period size: 51 Copynumber: 2.9 Consensus size: 50
84799628 CTAATACATG
* *
84799638 GTGGCCTTCACAAAGTAGCAAACTTGTATTAAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTAGCACACTTGTA-TAAAAGCTATTTTATTCACAAA
* *
84799689 GTGGCCTTCACATAGTAGCACACTTGTGA-ACAACGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTAGCACACTTGT-ATA-AAAGCTATTTTATTCACAAA
* * * *
84799740 GTGGCCTTCACATAGTACCACATTTGTCTCCAAAGCTATTTTATTC
1 GTGGCCTTCACATAGTAGCACACTTGTAT-AAAAGCTATTTTATTC
84799786 CTAAGGTTCA
Statistics
Matches: 83, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
50 1 0.01
51 81 0.98
52 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (50 bp):
GTGGCCTTCACATAGTAGCACACTTGTATAAAAGCTATTTTATTCACAAA
Found at i:84799856 original size:24 final size:24
Alignment explanation
Indices: 84799821--84799920 Score: 101
Period size: 24 Copynumber: 4.0 Consensus size: 24
84799811 ACTTAGCACA
* *
84799821 ATGCCGTGGACTTATTTCACTTAG
1 ATGCCATGGACTCATTTCACTTAG
* * *
84799845 ATGCCATAGACTCATTTCGCTCAG
1 ATGCCATGGACTCATTTCACTTAG
84799869 CACATTGCCATGGACTCATTTCACTTAG
1 ---A-TGCCATGGACTCATTTCACTTAG
* *
84799897 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTCATTTCACTTAG
84799921 CACAATGTCA
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
24 40 0.65
25 1 0.02
27 1 0.02
28 20 0.32
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (24 bp):
ATGCCATGGACTCATTTCACTTAG
Found at i:84799871 original size:52 final size:52
Alignment explanation
Indices: 84799809--84799927 Score: 157
Period size: 52 Copynumber: 2.3 Consensus size: 52
84799799 GGGAAATTTC
* * *
84799809 TCACTTAGCACAATGCCGTGGACTTATTTCACTTAGATGCCATAGACTCATT
1 TCACTCAGCACAATGCCATGGACTCATTTCACTTAGATGCCATAGACTCATT
* * * * *
84799861 TCGCTCAGCACATTGCCATGGACTCATTTCACTTAGATGCCATGGTCTTATT
1 TCACTCAGCACAATGCCATGGACTCATTTCACTTAGATGCCATAGACTCATT
*
84799913 TCACTTAGCACAATG
1 TCACTCAGCACAATG
84799928 TCATATCCTA
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 56 1.00
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (52 bp):
TCACTCAGCACAATGCCATGGACTCATTTCACTTAGATGCCATAGACTCATT
Found at i:84801250 original size:118 final size:118
Alignment explanation
Indices: 84801039--84801274 Score: 429
Period size: 118 Copynumber: 2.0 Consensus size: 118
84801029 TAAGGATAAA
84801039 ATTTTGAGCATGATTTTACTCATGATTTTCGACATTCATCTCTTTGATCCTTCTTTGATTTGTTT
1 ATTTTGAGCATGATTTTACTCATGATTTTCGACATTCATCTCTTTGATCCTTCTTTGATTTGTTT
*
84801104 GTCTTCTCCTTTGTTTCAAAGCATGTTGTAAAGCAGGATCTATGGAGAGTAAG
66 GTCTTCTCCTTTGTTTCAAAGCACGTTGTAAAGCAGGATCTATGGAGAGTAAG
*
84801157 ATTTTGAGCATGATTTTACTCTTGATTTTTC-ACATTCATCTCTTTGATCCTTCTTTGATTTGTT
1 ATTTTGAGCATGATTTTACTCATGA-TTTTCGACATTCATCTCTTTGATCCTTCTTTGATTTGTT
*
84801221 TGTCTTCTCCTTTGTTTCAAAGCACGTTGTAAAGCAGGATCTATGGAGGGTAAG
65 TGTCTTCTCCTTTGTTTCAAAGCACGTTGTAAAGCAGGATCTATGGAGAGTAAG
84801275 TTGATAATTC
Statistics
Matches: 114, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
118 109 0.96
119 5 0.04
ACGTcount: A:0.21, C:0.17, G:0.18, T:0.44
Consensus pattern (118 bp):
ATTTTGAGCATGATTTTACTCATGATTTTCGACATTCATCTCTTTGATCCTTCTTTGATTTGTTT
GTCTTCTCCTTTGTTTCAAAGCACGTTGTAAAGCAGGATCTATGGAGAGTAAG
Found at i:84805230 original size:40 final size:39
Alignment explanation
Indices: 84805175--84805471 Score: 321
Period size: 40 Copynumber: 7.5 Consensus size: 39
84805165 CGGATGATAA
* * *
84805175 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* *
84805215 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * * *
84805255 CCGGGCTAAGTCTCGAAGGCATCTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* *
84805295 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* *
84805335 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* *
84805375 CCGGGCTAAGTCCCGAAGGTATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* * *
84805415 TCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAT-T
* *
84805454 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
84805472 TACTTGTCTT
Statistics
Matches: 227, Mismatches: 28, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
38 15 0.07
39 14 0.06
40 198 0.87
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
Found at i:84805308 original size:80 final size:80
Alignment explanation
Indices: 84805175--84805471 Score: 366
Period size: 80 Copynumber: 3.7 Consensus size: 80
84805165 CGGATGATAA
* * * **
84805175 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
*
84805240 TGCGAGTTATTACGT
66 TGCGAGTTATTACAT
* * *
84805255 CCGGGCTAAGTCTCGAAGGCATCTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
84805320 TGCGAGTTATTACAT
66 TGCGAGTTATTACAT
* * * * *
84805335 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGTATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
* *
84805400 TGCGAGTTACTATAT
66 TGCGAGTTATTACAT
* * * * * *
84805415 TCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACATCCGGGCTAAGTCCCGAAGG
84805472 TACTTGTCTT
Statistics
Matches: 191, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
78 16 0.08
79 16 0.08
80 159 0.83
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTATTACAT
Found at i:84805392 original size:120 final size:120
Alignment explanation
Indices: 84805175--84805445 Score: 357
Period size: 120 Copynumber: 2.3 Consensus size: 120
84805165 CGGATGATAA
* * ** *
84805175 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTACATCCGGGCTAAGTCCCAAAGGCATTTG
* * * * *
84805240 TGCGAGTTATTACGTCCGGGCTAAGTCTCGAAGGCATCT-GTGCGAGTTATTACAT
66 TGCGAGCTACTACATCCGGGCTAAGTCCCGAAGGCAT-TGGTGCGAGTTACTACAT
* * *
84805295 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTACATCCGGGCTAAGTCCCAAAGGCATTTG
* * *
84805360 TGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGTATTGGTGCGAGTTACTATAT
66 TGCGAGCTACTACATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACAT
* *
84805415 TCGGGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
84805446 AGCTATATCC
Statistics
Matches: 132, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
119 10 0.08
120 122 0.92
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTACATCCGGGCTAAGTCCCAAAGGCATTTG
TGCGAGCTACTACATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACAT
Found at i:84808419 original size:16 final size:16
Alignment explanation
Indices: 84808398--84808428 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84808388 ATATATTTTC
*
84808398 ATTTGCATCATATATA
1 ATTTGCATCAAATATA
84808414 ATTTGCATCAAATAT
1 ATTTGCATCAAATAT
84808429 TAAATAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTTGCATCAAATATA
Found at i:84819641 original size:41 final size:43
Alignment explanation
Indices: 84819534--84819667 Score: 139
Period size: 43 Copynumber: 3.2 Consensus size: 43
84819524 AAGTCATACA
* * * * **
84819534 ATGCCAACGTCCCAGACGTGGTCTTACATGCAATCTCATATCG
1 ATGCCAATGTCCTAGACATGGTCTTACACGCAATCAAATATCG
* * *
84819577 ATGCCATTATCCCT-GACAGGGTCTTACACG-AATCAAATA-CG
1 ATGCCAATGT-CCTAGACATGGTCTTACACGCAATCAAATATCG
* *
84819618 ATGCCAATGTCCTAGACATGGTCTTACACGTAATAAAATATCG
1 ATGCCAATGTCCTAGACATGGTCTTACACGCAATCAAATATCG
84819661 ATGCCAA
1 ATGCCAA
84819668 CGTCTGAGAC
Statistics
Matches: 74, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
40 3 0.04
41 25 0.34
42 15 0.20
43 29 0.39
44 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCTAGACATGGTCTTACACGCAATCAAATATCG
Found at i:84819685 original size:43 final size:41
Alignment explanation
Indices: 84819597--84819688 Score: 114
Period size: 43 Copynumber: 2.2 Consensus size: 41
84819587 CCCTGACAGG
* * *
84819597 GTCTTACACGAATCAAATACGATGCCAATGTCCTAGACATG
1 GTCTTACACGAATAAAATACGATGCCAACGTCCTAGACATA
*
84819638 GTCTTACACGTAATAAAATATCGATGCCAACGT-CTGAGACGTA
1 GTCTTACACG-AATAAAATA-CGATGCCAACGTCCT-AGACATA
84819681 GTCTTACA
1 GTCTTACA
84819689 TTAGAACACA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
41 10 0.23
42 10 0.23
43 24 0.55
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (41 bp):
GTCTTACACGAATAAAATACGATGCCAACGTCCTAGACATA
Found at i:84820237 original size:28 final size:27
Alignment explanation
Indices: 84820206--84820258 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
84820196 TACATTCCAT
*
84820206 TTATTTC-ACATTTTAGTCCCTCAATTTA
1 TTATTTCTACAATTTAG-CCCT-AATTTA
84820234 TTATTTCTACAATTTAGCCCTAATT
1 TTATTTCTACAATTTAGCCCTAATT
84820259 ATTGAATATC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 4 0.17
28 11 0.48
29 8 0.35
ACGTcount: A:0.26, C:0.21, G:0.04, T:0.49
Consensus pattern (27 bp):
TTATTTCTACAATTTAGCCCTAATTTA
Found at i:84820530 original size:25 final size:25
Alignment explanation
Indices: 84820496--84820546 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
84820486 AATGGCCGAA
84820496 TACCCTAGGCTTTATTTCTTTTCTT
1 TACCCTAGGCTTTATTTCTTTTCTT
*
84820521 TACCTTAGGCTTTATTTCTTTTCTT
1 TACCCTAGGCTTTATTTCTTTTCTT
84820546 T
1 T
84820547 CTTTTTCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.12, C:0.22, G:0.08, T:0.59
Consensus pattern (25 bp):
TACCCTAGGCTTTATTTCTTTTCTT
Found at i:84823096 original size:26 final size:26
Alignment explanation
Indices: 84823067--84823129 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
84823057 TTAGAGATGA
* * *
84823067 ATGAAACATGACAGGTGTGTGAGTTG
1 ATGAAAAATGACAAGTGTGTCAGTTG
* *
84823093 ATGAAAGATGAGAAGTGTGTCAGTTG
1 ATGAAAAATGACAAGTGTGTCAGTTG
84823119 ATGAAAAATGA
1 ATGAAAAATGA
84823130 AGAGGTGATC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.38, C:0.05, G:0.32, T:0.25
Consensus pattern (26 bp):
ATGAAAAATGACAAGTGTGTCAGTTG
Found at i:84825753 original size:17 final size:17
Alignment explanation
Indices: 84825731--84825765 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
84825721 CTAAAGTAGA
84825731 AATTGAATATGAAATTG
1 AATTGAATATGAAATTG
84825748 AATTGAATATGAAATTG
1 AATTGAATATGAAATTG
84825765 A
1 A
84825766 CTATCTACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.17, T:0.34
Consensus pattern (17 bp):
AATTGAATATGAAATTG
Found at i:84828011 original size:518 final size:516
Alignment explanation
Indices: 84827017--84828051 Score: 2025
Period size: 518 Copynumber: 2.0 Consensus size: 516
84827007 ACTAGGGCTC
84827017 TAAAATTATAGGAAAGGATATATATATCAAAAATAAGTGGTAAAATAAAATAAATATATATAAAT
1 TAAAATTATAGGAAAGGATATATATATCAAAAATAAGTGGTAAAATAAAATAAATATATATAAAT
84827082 TTTAAGGTAAATAAATATATACAAAAGACAGCAATAATATCGCGAAATAAAAAGAAATAAAGAAT
66 TTTAAGGTAAATAAATATATACAAAAGACAGCAATAATATCGCGAAATAAAAAGAAATAAAGAAT
84827147 ACTAAAATAATAAAATAAAAGATGAACAAAGCAAATAAAACAAAACAAAGATAACAAATAATATT
131 ACTAAAATAATAAAATAAAAGATGAACAAAGCAAATAAAACAAAACAAAGATAACAAATAATATT
84827212 AATGAAACAAAAAGGGAAATATAATAATAGTAAAGATAAAGTCTTGATTTCAGAAGTTCATTAAA
196 AATGAAACAAAAAGGGAAATATAATAATAGTAAAGATAAAGTCTTGATTTCAGAAGTTCATTAAA
84827277 AAATGAAATAAACAGACACAAAACGAAATAAAATAAAATAATTGTAAAAGACGAAATTACTTAAG
261 AAATGAAATAAACAGACACAAAACGAAATAAAATAAAATAATTGTAAAAGACGAAATTACTTAAG
*
84827342 TAAAGGACCGAATTGAAAATAAAATGGAATTTAAAGTCTAGAATCTGAATAATGAACAAGCATAA
326 TAAAGGACCGAATTGAAAATAAAATGGAATTTAAAGTCTAGAATCTCAATAATGAACAAGCATAA
84827407 GGATCCAGATGGAATGCGTATGAAGATAGGAAGTGTAACACCCCAAACCCGGCCTGGAAGTTTGG
391 GGATCCAGATGGAATGCGTATGAAGATAGGAAGTGTAACACCCCAAACCCGGCCTGGAAGTTTGG
84827472 CTCGAATCTGGCATGTCACATTGAAGTGTTTTTCGAAAACCATGTTTCCATTAAAAACCCT
456 CTCGAATCTGGCATGTCACATTGAAGTGTTTTTCGAAAACCATGTTTCCATTAAAAACCCT
84827533 TAAAATTATAGGAAAGGATATATATATATCAAAAATAAGTGGTAAAATAAAATAAATATATATAA
1 TAAAATTATAGGAAAGG--ATATATATATCAAAAATAAGTGGTAAAATAAAATAAATATATATAA
*
84827598 ATTTTAAGGTAAATAAATATATACAAAAGACAGCAATAATATTGCGAAATAAAAAGAAATAAAGA
64 ATTTTAAGGTAAATAAATATATACAAAAGACAGCAATAATATCGCGAAATAAAAAGAAATAAAGA
84827663 ATACTAAAATAATAAAATAAAAGATGAACAAAGCAAATAAAACAAAACAAAGATAACAAATAATA
129 ATACTAAAATAATAAAATAAAAGATGAACAAAGCAAATAAAACAAAACAAAGATAACAAATAATA
84827728 TTAATGAAACAAAAAGGGAAATATAATAATAGTAAAGATAAAGTCTTGATTTCAGAAGTTCATTA
194 TTAATGAAACAAAAAGGGAAATATAATAATAGTAAAGATAAAGTCTTGATTTCAGAAGTTCATTA
84827793 AAAAATGAAATAAACAGACACAAAACGAAATAAAATAAAATAATTGTAAAAGACGAAATTACTTA
259 AAAAATGAAATAAACAGACACAAAACGAAATAAAATAAAATAATTGTAAAAGACGAAATTACTTA
84827858 AGTAAAGGACCGAATTGAAAATAAAATGGAATTTAAAGTCTAGAATCTCAATAATGAACAAGCAT
324 AGTAAAGGACCGAATTGAAAATAAAATGGAATTTAAAGTCTAGAATCTCAATAATGAACAAGCAT
*
84827923 AAGGATCCAGATGGAATGCGTATGAAGATAGGAAGTGTAACACCTCAAACCCGGCCTGGAAGTTT
389 AAGGATCCAGATGGAATGCGTATGAAGATAGGAAGTGTAACACCCCAAACCCGGCCTGGAAGTTT
84827988 GGCTCGAATCTGGCATGTCACATTGAAGTGTTTTTCGAAAACCATGTTTCCATTAAAAACCCT
454 GGCTCGAATCTGGCATGTCACATTGAAGTGTTTTTCGAAAACCATGTTTCCATTAAAAACCCT
84828051 T
1 T
84828052 CTTAATAATT
Statistics
Matches: 514, Mismatches: 3, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
516 17 0.03
518 497 0.97
ACGTcount: A:0.51, C:0.11, G:0.15, T:0.24
Consensus pattern (516 bp):
TAAAATTATAGGAAAGGATATATATATCAAAAATAAGTGGTAAAATAAAATAAATATATATAAAT
TTTAAGGTAAATAAATATATACAAAAGACAGCAATAATATCGCGAAATAAAAAGAAATAAAGAAT
ACTAAAATAATAAAATAAAAGATGAACAAAGCAAATAAAACAAAACAAAGATAACAAATAATATT
AATGAAACAAAAAGGGAAATATAATAATAGTAAAGATAAAGTCTTGATTTCAGAAGTTCATTAAA
AAATGAAATAAACAGACACAAAACGAAATAAAATAAAATAATTGTAAAAGACGAAATTACTTAAG
TAAAGGACCGAATTGAAAATAAAATGGAATTTAAAGTCTAGAATCTCAATAATGAACAAGCATAA
GGATCCAGATGGAATGCGTATGAAGATAGGAAGTGTAACACCCCAAACCCGGCCTGGAAGTTTGG
CTCGAATCTGGCATGTCACATTGAAGTGTTTTTCGAAAACCATGTTTCCATTAAAAACCCT
Found at i:84828619 original size:6 final size:6
Alignment explanation
Indices: 84828601--84828682 Score: 55
Period size: 6 Copynumber: 13.3 Consensus size: 6
84828591 AAGAAACATT
*
84828601 ATCAGA A-CTAGA ATCAGA AGT-AGA ATCAGGTA A-CAGA ATCAAA ATCAGA
1 ATCAGA ATC-AGA ATCAGA A-TCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* *
84828650 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
84828683 GTGAATGCAA
Statistics
Matches: 60, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
5 6 0.10
6 43 0.72
7 8 0.13
8 3 0.05
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:84828647 original size:31 final size:31
Alignment explanation
Indices: 84828612--84828682 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
84828602 TCAGAACTAG
84828612 AATCAGAAGT-AGAATCAGGTAACAGAATCAA
1 AATCAGAA-TCAGAATCAGGTAACAGAATCAA
*
84828643 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGAATCAGGTAACAGAATCAA
84828674 AATCAGAAT
1 AATCAGAAT
84828683 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
30 1 0.03
31 37 0.97
ACGTcount: A:0.51, C:0.14, G:0.17, T:0.18
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGGTAACAGAATCAA
Found at i:84828855 original size:27 final size:27
Alignment explanation
Indices: 84828825--84828889 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
84828815 AGTAAGTTGA
* *
84828825 GGCAAAGCCTCCAGAAT-AGATATTTGT
1 GGCAAAGCCACCAGAATCAGATA-ATGT
*
84828852 GGCATAGCCACCAGAATCAGATAATGT
1 GGCAAAGCCACCAGAATCAGATAATGT
84828879 GGCAAAGCCAC
1 GGCAAAGCCAC
84828890 TTAACAGAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 28 0.85
28 5 0.15
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
GGCAAAGCCACCAGAATCAGATAATGT
Found at i:84829095 original size:22 final size:22
Alignment explanation
Indices: 84829047--84829105 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
84829037 GTAAATACAT
84829047 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACGAAGCCATAGTCAAG
* * * *
84829069 ATGGCACGAAGCCATATTTAGG
1 TTGGCACGAAGCCATAGTCAAG
*
84829091 TTGGCACAAAGCCAT
1 TTGGCACGAAGCCAT
84829106 CGATAACGTG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACGAAGCCATAGTCAAG
Found at i:84830480 original size:27 final size:27
Alignment explanation
Indices: 84830442--84830572 Score: 165
Period size: 27 Copynumber: 4.9 Consensus size: 27
84830432 ATTACCAAAG
*
84830442 TACCCTCGATTTATAGAGTTA-TCGTTT
1 TACCCTCGATTTATAGAATTACT-GTTT
* *
84830469 TACCCTCGATTTATAGGATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
84830496 TACCCTCGATTTATAGAACTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
84830523 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* * *
84830550 TACCCTTGATTTACAAAATTACT
1 TACCCTCGATTTATAGAATTACT
84830573 AAAATACCCT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:84830580 original size:27 final size:27
Alignment explanation
Indices: 84830550--84830910 Score: 235
Period size: 27 Copynumber: 13.3 Consensus size: 27
84830540 ATTACTGTTT
* *
84830550 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
84830577 TACCCTCGATTTACAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
84830604 TACCCTCG-TTCAGTAAAATTACCAAAA
1 TACCCTTGATTTA-TAAAATTACCAAAA
* * * * *
84830631 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* * * *
84830657 TACCCTTGGTTTGTAAAATTATCGAAA
1 TACCCTTGATTTATAAAATTACCAAAA
** *
84830684 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
84830711 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTATAAAATTACCAAAA
* * * **
84830738 TACCAC-TGGTTTGTGAAATTACCGGAA
1 TACC-CTTGATTTATAAAATTACCAAAA
** *
84830765 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* * * *
84830792 TACCCCTGATTTACAAAGTTACAAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* * **
84830819 TACCCTTGGCTTTCTAAAAATTATGAAAA
1 TACCCTT-GATTTAT-AAAATTACCAAAA
* * * *
84830848 TACCATTGGTTTAACAAAATTACTAAAA
1 TACCCTTGATTT-ATAAAATTACCAAAA
* * * *
84830876 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
*
84830903 CACCCTTG
1 TACCCTTG
84830911 TAGGATGAAA
Statistics
Matches: 265, Mismatches: 60, Indels: 18
0.77 0.17 0.05
Matches are distributed among these distances:
26 24 0.09
27 194 0.73
28 31 0.12
29 16 0.06
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTATAAAATTACCAAAA
Found at i:84830581 original size:54 final size:54
Alignment explanation
Indices: 84830469--84830599 Score: 145
Period size: 54 Copynumber: 2.4 Consensus size: 54
84830459 GTTATCGTTT
* * * * ****
84830469 TACCCTCGATTTATAGGATTACCGTTTTACCCTCGATTTATAGAACTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAACTACTAAAA
* * * *
84830523 TACCCTTGATTTACAGAATTACTGTTTTACCCTTGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAACTACTAAAA
*
84830577 TACCCTCGATTTACAAAATTACC
1 TACCCTCGATTTACAGAATTACC
84830600 AAAATACCCT
Statistics
Matches: 62, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAACTACTAAAA
Found at i:84830608 original size:54 final size:54
Alignment explanation
Indices: 84830550--84830908 Score: 260
Period size: 54 Copynumber: 6.6 Consensus size: 54
84830540 ATTACTGTTT
** *
84830550 TACCCTTGATTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAA
* * * * ** * *
84830604 TACCCTCG-TTCAGTAAAATTACCAAAATACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTTGATT-TGTAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAA
* * * * **
84830657 TACCCTTGGTTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAA
* * *** **
84830711 TACCCCT-AGTTTGTAAAATTACCAAAATACCACT-GGTTTGTGAAATTACCGGAA
1 TACCCTTGA-TTTGTAAAATTACCAAAATACC-CTCGATTTACAAAATTACCAAAA
** * *
84830765 TACCCTCAATTTGTAAAATTACCAAAATACCC-CTGATTTACAAAGTTACAAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCTC-GATTTACAAAATTACCAAAA
* * ** * * * *
84830819 TACCCTTGGCTTTCTAAAAATTATGAAAATACCATTGGTTTAACAAAATTACTAAAA
1 TACCCTT-GATTTGT-AAAATTACCAAAATACCCTCGATTT-ACAAAATTACCAAAA
* * * *
84830876 TACCCTTGGTTTGTAGATTTACCAAAACACCCT
1 TACCCTTGATTTGTAAAATTACCAAAATACCCT
84830909 TGTAGGATGA
Statistics
Matches: 235, Mismatches: 58, Indels: 23
0.74 0.18 0.07
Matches are distributed among these distances:
53 42 0.18
54 129 0.55
55 20 0.09
56 24 0.10
57 20 0.09
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTTGATTTGTAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAA
Found at i:84830635 original size:81 final size:80
Alignment explanation
Indices: 84830550--84830824 Score: 297
Period size: 81 Copynumber: 3.4 Consensus size: 80
84830540 ATTACTGTTT
* * ** * *
84830550 TACCCTTGATTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCTC-GTT
1 TACCCCTGATTTACAAAATTACTAAAATACCCT-GGTTTGTAAAATTACCGAAATACCCTCAATT
*
84830614 CAGTAAAATTACCAAAA
65 -TGTAAAATTACCAAAA
* ** * *
84830631 TA-CCCT-AGTCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTATCGAAATACCCTCAAT
1 TACCCCTGA-TTTACAAAATTACTAAAATACCC-TGGTTTGTAAAATTACCGAAATACCCTCAAT
84830694 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
** * * *
84830711 TACCCCT-AGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGGAATACCCTCAAT
1 TACCCCTGA-TTTACAAAATTACTAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTCAAT
84830775 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
* *
84830792 TACCCCTGATTTACAAAGTTACAAAAATACCCT
1 TACCCCTGATTTACAAAATTACTAAAATACCCT
84830825 TGGCTTTCTA
Statistics
Matches: 166, Mismatches: 22, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
79 1 0.01
80 63 0.38
81 100 0.60
82 2 0.01
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (80 bp):
TACCCCTGATTTACAAAATTACTAAAATACCCTGGTTTGTAAAATTACCGAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:84831032 original size:27 final size:27
Alignment explanation
Indices: 84830932--84831032 Score: 100
Period size: 27 Copynumber: 3.7 Consensus size: 27
84830922 GACTAAAATA
*
84830932 CCCCTATTA-GGTAAAAAGACCGTAAAG
1 CCCCTA-TAGGGTAAAATGACCGTAAAG
*
84830959 CCCCTATAGGGTAAAGA-GACTGTAAAG
1 CCCCTATAGGGTAAA-ATGACCGTAAAG
* *
84830986 CCCCTGTAGGGTAAAGTGACCGTAATA-
1 CCCCTATAGGGTAAAATGACCGTAA-AG
* *
84831013 CCCCTGTATGGTAAAATGAC
1 CCCCTATAGGGTAAAATGAC
84831033 GAATGTGCCC
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
26 2 0.03
27 60 0.94
28 2 0.03
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
CCCCTATAGGGTAAAATGACCGTAAAG
Found at i:84831861 original size:26 final size:26
Alignment explanation
Indices: 84831832--84831937 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
84831822 GAGGAAGTGC
84831832 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
84831858 AAAATGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
84831884 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
84831910 AAAAGGGCTT-TGCCCCA-TTTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
84831933 AAAAG
1 AAAAG
84831938 AGGCAAGGCC
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
23 5 0.07
24 6 0.08
25 7 0.09
26 56 0.76
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:84833028 original size:27 final size:27
Alignment explanation
Indices: 84832994--84833431 Score: 547
Period size: 27 Copynumber: 16.2 Consensus size: 27
84832984 GGTTATCTCG
84832994 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
84833021 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
84833048 GTAATTTTATCCTACGGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
84833075 GTAATTCTACCCTACAGGGCTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
84833101 GATAATTCTACCTTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
84833129 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
84833156 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * **
84833183 GTCATTCTACCCTATAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
84833210 GTAATTCTACCATACAGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
84833237 ATAATTCTACACTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
84833264 GTAATTCTACCTTACAGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
84833291 GTAATTCTACCCTAGAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
84833317 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* **
84833345 GTAATTCTACCATACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
84833372 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
84833399 GTAATTCTACCCTATAGGGTTGTTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
84833426 GTAATT
1 GTAATT
84833432 TTGTAAATCG
Statistics
Matches: 351, Mismatches: 56, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
26 2 0.01
27 348 0.99
28 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Done.