Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 26 of 325
Found at i:7771401 original size:16 final size:16
Alignment explanation
Indices: 7771382--7771420 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7771372 TTATTTCAAG
*
7771382 TTTAGATGAATTTAAA
1 TTTAGATCAATTTAAA
*
7771398 TTTAAATCAATTTAAA
1 TTTAGATCAATTTAAA
*
7771414 TTAAGAT
1 TTTAGAT
7771421 TCATCAAATC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.44
Consensus pattern (16 bp):
TTTAGATCAATTTAAA
Found at i:7774365 original size:2 final size:2
Alignment explanation
Indices: 7774358--7774384 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7774348 ATTGAAATTA
7774358 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7774385 AACAATTGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7774900 original size:7 final size:7
Alignment explanation
Indices: 7774864--7774897 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
7774854 TTTAAATTAT
7774864 TTATATG
1 TTATATG
7774871 TTATATG
1 TTATATG
7774878 TTATATG
1 TTATATG
* *
7774885 CTATATA
1 TTATATG
7774892 TTATAT
1 TTATAT
7774898 ATTTTTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (7 bp):
TTATATG
Found at i:7776074 original size:14 final size:14
Alignment explanation
Indices: 7776057--7776083 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7776047 ATATTTGAAA
7776057 AAAATTTAAAAAAT
1 AAAATTTAAAAAAT
7776071 AAAATTTAAAAAA
1 AAAATTTAAAAAA
7776084 AGTATATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAAATTTAAAAAAT
Found at i:7777092 original size:22 final size:21
Alignment explanation
Indices: 7777057--7777106 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
7777047 AAAAGATCTA
7777057 CTATTTTTTGTTGTTTTAATG
1 CTATTTTTTGTTGTTTTAATG
* *
7777078 TTATTTTATTGTTGTTTTAGTG
1 CTATTTT-TTGTTGTTTTAATG
7777100 CTATTTT
1 CTATTTT
7777107 CTTATTCGTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 6 0.24
22 19 0.76
ACGTcount: A:0.14, C:0.04, G:0.14, T:0.68
Consensus pattern (21 bp):
CTATTTTTTGTTGTTTTAATG
Found at i:7780233 original size:16 final size:16
Alignment explanation
Indices: 7780212--7780279 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
7780202 TTTGGTTCGC
7780212 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
7780228 TGTATTGGATTAGAAG
1 TGTATTGGATTAGAGG
7780244 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
7780260 TGTATTAGATTAAAGG
1 TGTATTGGATTAGAGG
7780276 TGTA
1 TGTA
7780280 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:7780603 original size:157 final size:157
Alignment explanation
Indices: 7780409--7780718 Score: 548
Period size: 157 Copynumber: 2.0 Consensus size: 157
7780399 CCCTTAGCAT
*
7780409 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
7780474 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
7780539 TTTAATAAAATTCTTAATAATTACCAG
131 TTTAATAAAATTCTTAATAATTACCAG
* * *
7780566 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTGATAAGATTATTAATATGAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
7780631 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
7780696 TTTAATAAAATTCTTAATAATTA
131 TTTAATAAAATTCTTAATAATTA
7780719 ATATTCTTAT
Statistics
Matches: 145, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
157 145 1.00
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (157 bp):
AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTACCAG
Found at i:7780715 original size:82 final size:81
Alignment explanation
Indices: 7780472--7780721 Score: 186
Period size: 76 Copynumber: 3.1 Consensus size: 81
7780462 TATTATTATC
* * *
7780472 AATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTAT-ATTAAAATATAT
7780537 AATTTAATAAAATTCTT
65 AATTTAATAAAATTCTT
* * * * *
7780554 AATAATTACCAGA-AATTT-GT--T-TTGGT-AA-ATTATTATTGTT--AT-TGTTAT-TTAAAT
1 AATAA-TA--A-ATAATTTAATCATATT--TAAACATAATTATTATTAAATATATTATATTAAAA
* * * * *
7780608 TTTGATAAGATT-AT-TAA-TATG
60 TAT-ATAA-TTTAATAAAATTCTT
7780629 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATA-TTAAAATATAT
7780694 AATTTAATAAAATTCTT
65 AATTTAATAAAATTCTT
*
7780711 AATAATTAATA
1 AATAATAAATA
7780722 TTCTTATATG
Statistics
Matches: 121, Mismatches: 24, Indels: 46
0.63 0.13 0.24
Matches are distributed among these distances:
71 1 0.01
72 6 0.05
73 1 0.01
74 3 0.02
75 10 0.08
76 21 0.17
77 6 0.05
78 8 0.07
79 8 0.07
80 6 0.05
81 21 0.17
82 20 0.17
83 3 0.02
84 1 0.01
85 5 0.04
86 1 0.01
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (81 bp):
AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATATTAAAATATATA
ATTTAATAAAATTCTT
Found at i:7780792 original size:157 final size:155
Alignment explanation
Indices: 7780455--7780776 Score: 349
Period size: 157 Copynumber: 2.0 Consensus size: 155
7780445 TTAAATTTTA
* * * *
7780455 ATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATA
1 ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
* * * * * * *
7780520 TTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTACCAGAAATTTGTTTTGGTAAATT
66 TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTAGTAAATC
* * * * *
7780585 ATTATTGTTATTGTTATTTAAATTTTG
131 ATAATTATTATTGATATATAAA--TAG
* *
7780612 ATAAGATTATTAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATA
1 ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
* * ** *
7780677 TTATACTTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTATTCA
66 TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACA--CAAATATG-ATTTAGT-A
7780742 AATCATAATATATTATATGATACTATAAA-AG
127 AATCATAAT-TATTAT-TGATA-TATAAATAG
7780773 ATAA
1 ATAA
7780777 TTTGAAATAA
Statistics
Matches: 137, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
157 102 0.74
159 4 0.03
160 4 0.03
161 13 0.09
162 5 0.04
163 4 0.03
164 5 0.04
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (155 bp):
ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTAGTAAATC
ATAATTATTATTGATATATAAATAG
Found at i:7781615 original size:13 final size:13
Alignment explanation
Indices: 7781597--7781626 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7781587 CAATCAGCTA
7781597 AATTCAGAAAAAC
1 AATTCAGAAAAAC
*
7781610 AATTCAGAAAAAT
1 AATTCAGAAAAAC
7781623 AATT
1 AATT
7781627 ACATGACAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.10, G:0.07, T:0.23
Consensus pattern (13 bp):
AATTCAGAAAAAC
Found at i:7785646 original size:38 final size:38
Alignment explanation
Indices: 7785592--7785665 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
7785582 TTAAATCACA
*
7785592 TACTATATAACTTGGGGGTTTGCATACTATGTCATATG
1 TACTATATAACATGGGGGTTTGCATACTATGTCATATG
7785630 TACTATATAACATGGGGGTTTGCATACTATGTCATA
1 TACTATATAACATGGGGGTTTGCATACTATGTCATA
7785666 CCATATAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (38 bp):
TACTATATAACATGGGGGTTTGCATACTATGTCATATG
Found at i:7785680 original size:34 final size:34
Alignment explanation
Indices: 7785590--7785729 Score: 138
Period size: 34 Copynumber: 4.0 Consensus size: 34
7785580 TATTAAATCA
* *
7785590 CATACTATATAACT-TGGGGGTTTGCATACTATGT
1 CATACCATATAA-TGTGGGGGTTCGCATACTATGT
* ** *
7785624 CATATGTACTATATAACATGGGGGTTTGCATACTATGT
1 C--A--TACCATATAATGTGGGGGTTCGCATACTATGT
* *
7785662 CATACCATATAATGTGGGGGTTCACATACTTTGT
1 CATACCATATAATGTGGGGGTTCGCATACTATGT
**
7785696 CATACCATATAATGTGATGGTTCGCATACTATGT
1 CATACCATATAATGTGGGGGTTCGCATACTATGT
7785730 ATTAAGTGAT
Statistics
Matches: 90, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
34 57 0.63
36 2 0.02
38 31 0.34
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (34 bp):
CATACCATATAATGTGGGGGTTCGCATACTATGT
Found at i:7786116 original size:18 final size:18
Alignment explanation
Indices: 7786093--7786130 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
7786083 TTAAAATAGG
7786093 ATTAGGAGTTAG-TTTAAA
1 ATTAGGA-TTAGATTTAAA
*
7786111 ATTAGGATTTGATTTAAA
1 ATTAGGATTAGATTTAAA
7786129 AT
1 AT
7786131 AATGACTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.42
Consensus pattern (18 bp):
ATTAGGATTAGATTTAAA
Found at i:7791588 original size:12 final size:12
Alignment explanation
Indices: 7791571--7791595 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7791561 TGATATTTGT
7791571 TATAAAAATAAA
1 TATAAAAATAAA
7791583 TATAAAAATAAA
1 TATAAAAATAAA
7791595 T
1 T
7791596 TTAACTCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
TATAAAAATAAA
Found at i:7793404 original size:137 final size:137
Alignment explanation
Indices: 7793142--7793406 Score: 388
Period size: 137 Copynumber: 1.9 Consensus size: 137
7793132 AATCGGTTAA
* * * * *
7793142 TCTATTTTTAAAGACGTCAGATTTTTCTTTTGGAATTTCACTTCTCATTTGAAAAAAGTGAAACA
1 TCTACTTTTAAAAACATCAGATTTTTCTTTTGGAATTTCACTTATCATTGGAAAAAAGTGAAACA
* * * * *
7793207 CTTTGCAATACATAGTTGCATGCAGTGTAATATTATTGCCTCGTGTTGTTCTGCATTGAAAGACG
66 CTTTGCAATACATAATTGCATGCAATGTAACATTATTGCCTCGTGTTGCTCTGCACTGAAAGACG
7793272 ACTATAT
131 ACTATAT
* * *
7793279 TCTACTTTTAAAAACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAA-TGAAAC
1 TCTACTTTTAAAAACATCAGATTTTTCTTTTGGAATTTCACTTATCA-TTGGAAAAAAGTGAAAC
*
7793343 ACTTTGCAATACATAATTGCATGCAATGTAACATTATTGCCTCGTGTTGCTCTTCACTGAAAGA
65 ACTTTGCAATACATAATTGCATGCAATGTAACATTATTGCCTCGTGTTGCTCTGCACTGAAAGA
7793407 TGGCAATATT
Statistics
Matches: 113, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
137 105 0.93
138 8 0.07
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (137 bp):
TCTACTTTTAAAAACATCAGATTTTTCTTTTGGAATTTCACTTATCATTGGAAAAAAGTGAAACA
CTTTGCAATACATAATTGCATGCAATGTAACATTATTGCCTCGTGTTGCTCTGCACTGAAAGACG
ACTATAT
Found at i:7793563 original size:156 final size:156
Alignment explanation
Indices: 7793279--7796814 Score: 4620
Period size: 156 Copynumber: 22.8 Consensus size: 156
7793269 ACGACTATAT
* *
7793279 TCTACTTTTAAAAACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAATGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * *
7793344 CTTTGCAATACATAATTGCATGCAATGTAACATTATTGCCTCGTGTTGCTCTTCACTGAAAGATG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * * *
7793409 GCAATATTTTCTATAAAATTGACTAA
131 GCGATATTTTCTATAAAATCGGCGAA
*
7793435 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTTTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * *
7793500 CTTTGCAATACATAGTTGCATGCAATGTAACGTTATTGTCC-CGTGTTGTTCTTCACTGAAAGAT
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTG-CCTCGTGTTGTTCTTCACTGAAAGAC
** * *
7793564 GGTAATATTTTCTATAAAATTGGCAAA
130 GGCGATATTTTCTATAAAATCGGCGAA
7793591 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * *
7793656 CTTTGCAATACATAGTTGCATGCAATGTAACGTTATTGTCC-CGCGTTGTTCTTCACTGAAAAAC
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTG-CCTCGTGTTGTTCTTCACTGAAAGAC
** **
7793720 GATGATATTTTCTATAAAA-CTGGTAAA
130 GGCGATATTTTCTATAAAATC-GGCGAA
* *
7793747 TCTACTTTTAAAGACATTAGACTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAAAA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * *
7793812 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTTACTGAAAAATG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
*
7793877 ACGATATTTTCTATAAAAT-GGCGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* * *
7793902 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTATTATTACTTGGCAAAAGCGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * *
7793967 CTTTGTAATACATAGTTGCATGCAGGGTAACATTATTGCCTCG-GTTGTTCTTCACTGAATGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * * **
7794031 ACGATATTTTCTGTAAAACCGGTTAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
7794057 TCTACTTTTAAAGACATTAGGTTTTTCTTTTGGAATTTCTCTTATCATTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
** * *
7794122 CTTTGCAATACATAGTTGCATTAAGTGTAACATTATTGCCTCGTGTTATTCTTCACTAAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
** * *
7794187 ATGAAATTTTCTATAAAATCGACGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
7794213 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTATCTTATCACTTGGCCAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * *
7794278 CTTTGTAATACATAGTTGCATGCAATGTAACATTATTGCCTC-TGTTCTTCTTCACTGAAAAACA
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
*
7794342 GTGATATTTTCTATAAAA-CGGGCGAA
131 GCGATATTTTCTATAAAATC-GGCGAA
* *
7794368 CCTACTTTTAAAAACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * ** * * *
7794433 CTTTGCAATACATAGTTGCATGTAGTGTAACATTATTGCTTTATGTTGTTCTTCATTGAAAAACT
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
*
7794498 GCGATATTTTCTATAAAATTGGCGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* * *
7794524 TCTACTTTTAAAGACATTTGATTTTTATTTTGGAATTTCTCTTATTACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
** * * ** * *
7794589 CTTTAAAATACATAGTTGTATGTAGTGTAACATTATTGCCTCGCATTGTTCTGCACTGAAAGACA
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* *
7794654 GCAATATTTTCTATAAAATCGGCAAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
7794680 TATACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGAAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * *
7794745 CTTTGTAATACATAGTTGCATGTAGTGTAGCATTATTGCCTCGTGTTGTTCTGCATTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * *
7794810 ACGATATTTTCTATAAAATCGACCAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
7794836 TCTACTTTTAAAGACATTAGATTTTTTTTTTTTGAAATTTCTCTTATCACTTGGCAAAAGTGAAA
1 TCTACTTTTAAAGACATTAGA--TTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAA
*
7794901 CACTTTGCAATACATAGTTGCATTCAGTGTAACATTATTGCCTCGTGTTGTTCTGT-A-TGGAAA
64 CACTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCT-TCACT-GAAA
** *
7794964 GACGGTTATATTTTCTATAAAATCGTCGAA
127 GACGGCGATATTTTCTATAAAATCGGCGAA
* * *
7794994 TCTACTTTTAAATACATTAGGTTTTTCTTTTGGAATTTCGCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * *
7795059 CTTTGCAATACATAGTTGCATTCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGGCA
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
** * *
7795124 ATGATATTTTTTATAAAATCGACGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* * * *
7795150 TCTACTTTTAAAGACATTAGAATGTTATTTTGGAGTTTCTCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* *
7795215 CTTTGCAATACATAGTTGCATGCAGTGTAACGTTATTGCCTCGTGTTGTTCTACACTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* *
7795280 ACTATATTTTCTATAAAATCGGCGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
7795306 TCTACTTTTAAAGACATTAGATTTTTCTTTTGAAATTTCTCTTATCACTTGGCAAAAATGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* *
7795371 CTTTGCAATACATAGTTGCATGCAATGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACT
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * *
7795436 GCGATATTTTCTATAAAATTGACGTA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
7795462 TCTACATTTAAAGATATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * * * * *
7795527 CTTTGCAATACATAGTTGGATTCAATGTAACATTACTACCTCGTGTTGTTCTACACTGAAAGACA
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
7795592 GCGATATTTTCTATAAAATCGGCGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
7795618 TCTACTTTTAAAGACATTAGA-TTGTCTTTAT-GAATTTCTCTTATCACTTGGAAAAAGTGAAAC
1 TCTACTTTTAAAGACATTAGATTTTTCTTT-TGGAATTTCTCTTATCACTTGGCAAAAGTGAAAC
* ** * * *** * * *
7795681 ACTTTGCAATACATAGTTGTATGCAGCATAACATGTGTAGAAAGACAGCGATATT-TTCTAC--A
65 ACTTTGCAATACATAGTTGCATGCAGTGTAACAT-TATTG--CCTC-GTGTTGTTCTTC-ACTGA
* * * * * *
7795743 AA-ATCGACGA-ATATACTTTTAAA--GAC--A
125 AAGA-CGGCGATATTTTCTATAAAATCGGCGAA
* * * * * * * ** **
7795770 T-TAGATTTT----TCTTTTGGA-ATTTCTCTT---A--TCACTTGGAAAAAGT-G---AA---A
1 TCTA-CTTTTAAAGAC-ATTAGATTTTTCTTTTGGAATTTCTCTT--ATCACTTGGCAAAAGTGA
* * * * * *
7795817 CAC-TT-TGCAATACAAAGTTGCATGTAGTGTAACATTATTGCCTTGTGTTGTTACGT-ACTGAA
62 AACACTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTT-CTTCACTGAA
*
7795879 AGACGGTGATATTTTCTATAAAATCGGCGAA
126 AGACGGCGATATTTTCTATAAAATCGGCGAA
* * *
7795910 TCTACTTTTAAAGACATCAGGTTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAATTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * *
7795975 CTTTGCAATACATAGTTACATGTAGTATAACATTATTGCCTCATGTTGTTCTTCACTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
*
7796040 GCGATATTTTCTATAAAATCGACGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* *
7796066 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATATCTCTCATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * *
7796131 CTTTACAAAACATAATTGCATGCAGTGTAACATTATTGCTTCGTGTTGTTCTTCACTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* *
7796196 AC-ATTATTTTCTATAAAATTGGCGAA
131 GCGA-TATTTTCTATAAAATCGGCGAA
* *
7796222 CCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCCCTTATCACTTGGCAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * **
7796287 CTTTACAATACATAGTTGCATTCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGGTG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
*
7796352 GCGATATTTTCTATAAAATCGGTGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* * * *
7796378 TCTACTTTTAAATACATTAGATTTTTCTTTTCGAATATCTCTTTATCACTTGGCAAAAGTGAAAT
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTC-TTATCACTTGGCAAAAGTGAAAC
* * * * *
7796443 ACTTTGTAATACATAGTTGTATGCAGTGTATCATTATTGCCTTGTGTTGTTCTTCACTGAAAGAT
65 ACTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGAC
7796508 GGCGATATTTTCTATAAAATCGGCGAA
130 GGCGATATTTTCTATAAAATCGGCGAA
* * *
7796535 TCTACTTTGAAAGACATTAGATTTTTCTTTTAGAATTTCTCTTATCACTTGGGAAAAGTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
7796600 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
* * *
7796665 ACAATATTTTCTATAAAATTGGCGAA
131 GCGATATTTTCTATAAAATCGGCGAA
* * **
7796691 TATACTTTTAAGGACATTAGATTTTT-TTTTGGAATTTCTCTTATCACTTGGCAAATTTGAAACA
1 TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
* * * *
7796755 CTTTGCAATGCATAGTTGCATTCAATGTAACATTATTGCCTTGTGTTGTTCTTCACTGAA
66 CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAA
7796815 CAAGTAGCTA
Statistics
Matches: 2970, Mismatches: 350, Indels: 121
0.86 0.10 0.04
Matches are distributed among these distances:
133 7 0.00
135 8 0.00
136 13 0.00
137 25 0.01
138 3 0.00
139 3 0.00
140 6 0.00
141 2 0.00
142 2 0.00
143 2 0.00
144 13 0.00
145 1 0.00
146 4 0.00
147 4 0.00
148 3 0.00
149 14 0.00
151 4 0.00
152 6 0.00
154 40 0.01
155 509 0.17
156 1998 0.67
157 155 0.05
158 141 0.05
159 7 0.00
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (156 bp):
TCTACTTTTAAAGACATTAGATTTTTCTTTTGGAATTTCTCTTATCACTTGGCAAAAGTGAAACA
CTTTGCAATACATAGTTGCATGCAGTGTAACATTATTGCCTCGTGTTGTTCTTCACTGAAAGACG
GCGATATTTTCTATAAAATCGGCGAA
Found at i:7795836 original size:137 final size:136
Alignment explanation
Indices: 7795584--7795836 Score: 436
Period size: 137 Copynumber: 1.9 Consensus size: 136
7795574 GTTCTACACT
* * *
7795584 GAAAGACAGCGATATTTTCTATAAAATCGGCGAATCTACTTTTAAAGACATTAGATTGTCTTTAT
1 GAAAGACAGCGATATTTTCTACAAAATCGACGAATATACTTTTAAAGACATTAGATTGTCTTTAT
*
7795649 GAATTTCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACATAGTTGTATGCAGCATAACA
66 GAATTTCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACAAAGTTGTATGCAGCATAACA
7795714 TGTGTA
131 TGTGTA
*
7795720 GAAAGACAGCGATATTTTCTACAAAATCGACGAATATACTTTTAAAGACATTAGATTTTTCTTT-
1 GAAAGACAGCGATATTTTCTACAAAATCGACGAATATACTTTTAAAGACATTAGA-TTGTCTTTA
7795784 TGGAATTTCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACAAAGTTG
65 T-GAATTTCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACAAAGTTG
7795837 CATGTAGTGT
Statistics
Matches: 110, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
136 53 0.48
137 57 0.52
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (136 bp):
GAAAGACAGCGATATTTTCTACAAAATCGACGAATATACTTTTAAAGACATTAGATTGTCTTTAT
GAATTTCTCTTATCACTTGGAAAAAGTGAAACACTTTGCAATACAAAGTTGTATGCAGCATAACA
TGTGTA
Found at i:7799202 original size:125 final size:125
Alignment explanation
Indices: 7799060--7799284 Score: 355
Period size: 125 Copynumber: 1.8 Consensus size: 125
7799050 CAAAAATTAA
* *
7799060 ATCAAGTATAGGATGTCACATTTAGT-GATATTATTGTAATTT-AGATTTCTTTTCATTTTTAAA
1 ATCAAGTATAGGATGTCACATTTAGTAG-TATCATTGTAATTTGA-ATTTATTTTCATTTTTAAA
* *
7799123 ATTATACATTTCGATCTTAAAGAAATTAACTACATATTCAAATCTGAATATTCAACAATCAG
64 ATTATACACTTCGATCTTAAAGAAACTAACTACATATTCAAATCTGAATATTCAACAATCAG
* *
7799185 ATCAAGTATAGGATGTCATATTTAGTAGTATCATTGTAATTTGAATTTATTTTTATTTTTAAAAT
1 ATCAAGTATAGGATGTCACATTTAGTAGTATCATTGTAATTTGAATTTATTTTCATTTTTAAAAT
*
7799250 TATACACTTCGATCTTAAATAAACTAACTACATAT
66 TATACACTTCGATCTTAAAGAAACTAACTACATAT
7799285 GAAATTGCCA
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
125 89 0.98
126 2 0.02
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.42
Consensus pattern (125 bp):
ATCAAGTATAGGATGTCACATTTAGTAGTATCATTGTAATTTGAATTTATTTTCATTTTTAAAAT
TATACACTTCGATCTTAAAGAAACTAACTACATATTCAAATCTGAATATTCAACAATCAG
Found at i:7801530 original size:30 final size:29
Alignment explanation
Indices: 7801496--7801561 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
7801486 ATATTAATAT
7801496 AAAATTTAAATTTATTATTATAATTTTTTGA
1 AAAATTT-AATTTATTATTATAATTTTTT-A
* * *
7801527 AAATATTT-TTTTATTTTTATATTTTTTTA
1 AAA-ATTTAATTTATTATTATAATTTTTTA
7801556 AAAATT
1 AAAATT
7801562 ATTATATATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 3 0.10
29 4 0.13
30 17 0.55
31 3 0.10
32 4 0.13
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (29 bp):
AAAATTTAATTTATTATTATAATTTTTTA
Found at i:7801568 original size:20 final size:20
Alignment explanation
Indices: 7801543--7801580 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7801533 TTTTTTATTT
*
7801543 TTATATTTTTTTAAAAATTA
1 TTATATATTTTTAAAAATTA
7801563 TTATATATTTTTAAAAAT
1 TTATATATTTTTAAAAAT
7801581 ATTTGTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TTATATATTTTTAAAAATTA
Found at i:7801574 original size:50 final size:53
Alignment explanation
Indices: 7801509--7801611 Score: 133
Period size: 50 Copynumber: 1.9 Consensus size: 53
7801499 ATTTAAATTT
*
7801509 ATTATTATAATTTTTTGAAAATA-T-TTTTT-TATTTTTATATTTTTTTAAAA
1 ATTATTATAATTTTTTAAAAATATTGTTTTTATATTTTTATATTTTTTTAAAA
7801559 ATTATTAT-ATATTTTTAAAAATATTTGTGTTTTTATATTTTTATATTTTTTTA
1 ATTATTATAAT-TTTTTAAAAATA--T-TGTTTTTATATTTTTATATTTTTTTA
7801612 GAATTAGGAT
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
49 2 0.04
50 19 0.42
54 1 0.02
55 5 0.11
56 18 0.40
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (53 bp):
ATTATTATAATTTTTTAAAAATATTGTTTTTATATTTTTATATTTTTTTAAAA
Found at i:7804053 original size:19 final size:20
Alignment explanation
Indices: 7804011--7804054 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
7804001 TTTTATGCAC
*
7804011 ATTTTATTTAGTTAAACAAG
1 ATTTTATTTAGTTAAAAAAG
* *
7804031 ATTTTATTT-TTTAAAAAAT
1 ATTTTATTTAGTTAAAAAAG
7804050 ATTTT
1 ATTTT
7804055 TTAAAAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (20 bp):
ATTTTATTTAGTTAAAAAAG
Found at i:7804054 original size:14 final size:14
Alignment explanation
Indices: 7804035--7804063 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7804025 AACAAGATTT
7804035 TATTTTTTAAAAAA
1 TATTTTTTAAAAAA
7804049 TATTTTTTAAAAAA
1 TATTTTTTAAAAAA
7804063 T
1 T
7804064 TAAATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TATTTTTTAAAAAA
Found at i:7804360 original size:18 final size:17
Alignment explanation
Indices: 7804309--7804364 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 17
7804299 TTTTTAGGCC
7804309 TAATTTTTATATATTTTA
1 TAATTTTTA-ATATTTTA
* *
7804327 TGATTTCCT-ATAATTTTA
1 TAATTT-TTAAT-ATTTTA
7804345 TAATTTTTAATGATTTTA
1 TAATTTTTAAT-ATTTTA
7804363 TA
1 TA
7804365 TATAAAATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
17 3 0.10
18 26 0.87
19 1 0.03
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (17 bp):
TAATTTTTAATATTTTA
Found at i:7804366 original size:28 final size:27
Alignment explanation
Indices: 7804313--7804366 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
7804303 TAGGCCTAAT
*
7804313 TTTTATATATTTTATGATTTCCTATAA
1 TTTTATATATTTTATGATTTCATATAA
*
7804340 TTTTATA-ATTTTTAATGATTTTATATA
1 TTTTATATA-TTTT-ATGATTTCATATA
7804367 TAAAATACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 1 0.04
27 11 0.48
28 11 0.48
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (27 bp):
TTTTATATATTTTATGATTTCATATAA
Found at i:7815745 original size:26 final size:25
Alignment explanation
Indices: 7815716--7815823 Score: 80
Period size: 25 Copynumber: 4.3 Consensus size: 25
7815706 TTCATATGCA
7815716 GGAATGCTCTTAT-GAGCACATA-AACG
1 GGAA-GCTCTT-TCGAGC-CATATAACG
7815742 GGAAGCTCTTTCGAGCCATATAACG
1 GGAAGCTCTTTCGAGCCATATAACG
* **
7815767 GGAAG-T-TTATGTGAGCTGTATAACG
1 GGAAGCTCTT-T-CGAGCCATATAACG
* * *
7815792 GGAAGCTCTTGCGAGCCAAATATCG
1 GGAAGCTCTTTCGAGCCATATAACG
*
7815817 AGAAGCT
1 GGAAGCT
7815824 TAAGCGAGCT
Statistics
Matches: 66, Mismatches: 10, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
23 2 0.03
24 7 0.11
25 50 0.76
26 5 0.08
27 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (25 bp):
GGAAGCTCTTTCGAGCCATATAACG
Found at i:7815757 original size:25 final size:25
Alignment explanation
Indices: 7815716--7815801 Score: 81
Period size: 25 Copynumber: 3.4 Consensus size: 25
7815706 TTCATATGCA
7815716 GGAATGCTCTTATGAGCACATA-AACG
1 GGAA-GCTCTTATGAGC-CATATAACG
7815742 GGAAGCTCTT-TCGAGCCATATAACG
1 GGAAGCTCTTAT-GAGCCATATAACG
**
7815767 GGAAG-T-TTATGTGAGCTGTATAACG
1 GGAAGCTCTTA--TGAGCCATATAACG
7815792 GGAAGCTCTT
1 GGAAGCTCTT
7815802 GCGAGCCAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
23 2 0.04
24 6 0.12
25 35 0.69
26 6 0.12
27 2 0.04
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (25 bp):
GGAAGCTCTTATGAGCCATATAACG
Found at i:7815807 original size:25 final size:25
Alignment explanation
Indices: 7815729--7815823 Score: 86
Period size: 25 Copynumber: 3.8 Consensus size: 25
7815719 ATGCTCTTAT
*
7815729 GAGCACATA-AACGGGAAGCTCTTTC
1 GAGC-CATATAACGGGAAGCTCTTGC
* *
7815754 GAGCCATATAACGGGAAG-TTTATGT
1 GAGCCATATAACGGGAAGCTCT-TGC
**
7815779 GAGCTGTATAACGGGAAGCTCTTGC
1 GAGCCATATAACGGGAAGCTCTTGC
* * *
7815804 GAGCCAAATATCGAGAAGCT
1 GAGCCATATAACGGGAAGCT
7815824 TAAGCGAGCT
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
24 6 0.11
25 47 0.85
26 2 0.04
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.22
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCTTGC
Found at i:7815833 original size:50 final size:50
Alignment explanation
Indices: 7815738--7815833 Score: 129
Period size: 50 Copynumber: 1.9 Consensus size: 50
7815728 TGAGCACATA
* * * * * *
7815738 AACGGGAAGCTCTTTCGAGCCATATAACGGGAAGTTTATGTGAGCTGTAT
1 AACGGGAAGCTCTTGCGAGCCAAATAACGAGAAGCTTAAGCGAGCTGTAT
*
7815788 AACGGGAAGCTCTTGCGAGCCAAATATCGAGAAGCTTAAGCGAGCT
1 AACGGGAAGCTCTTGCGAGCCAAATAACGAGAAGCTTAAGCGAGCT
7815834 ATTAATCAGA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (50 bp):
AACGGGAAGCTCTTGCGAGCCAAATAACGAGAAGCTTAAGCGAGCTGTAT
Found at i:7828982 original size:16 final size:16
Alignment explanation
Indices: 7828958--7829008 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
7828948 TGAATTACTA
*
7828958 ATTACAGTTCTATTCT
1 ATTACAGTTCTATTCC
*
7828974 ATTATAGTTCTATTCC
1 ATTACAGTTCTATTCC
*
7828990 ATTACAGCTCTATTCC
1 ATTACAGTTCTATTCC
7829006 ATT
1 ATT
7829009 CTAATGAACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (16 bp):
ATTACAGTTCTATTCC
Found at i:7834789 original size:22 final size:22
Alignment explanation
Indices: 7834751--7834793 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7834741 TGTTGCCAGT
*
7834751 CGTTCAATAGACGGAGCTTCAC
1 CGTTCAATAGACAGAGCTTCAC
7834773 CGTTCAATAG-CAAGAGCTTCA
1 CGTTCAATAGAC-AGAGCTTCA
7834794 TGGCTTCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (22 bp):
CGTTCAATAGACAGAGCTTCAC
Found at i:7838544 original size:11 final size:11
Alignment explanation
Indices: 7838528--7838558 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
7838518 GTAATGTTAA
7838528 AATATATACAT
1 AATATATACAT
7838539 AATATATACAT
1 AATATATACAT
7838550 ATATATATA
1 A-ATATATA
7838559 AAATAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (11 bp):
AATATATACAT
Found at i:7838713 original size:20 final size:19
Alignment explanation
Indices: 7838690--7838755 Score: 51
Period size: 22 Copynumber: 3.2 Consensus size: 19
7838680 TACGAAAATA
*
7838690 ATACTATATATAAAATATGT
1 ATACTA-ATATAAAATATAT
*
7838710 ATACAAGAATAATAAAATATAT
1 ATAC--TAAT-ATAAAATATAT
*
7838732 ATACTAATATTAATAATAAAT
1 ATACTAATA-TAA-AATATAT
7838753 ATA
1 ATA
7838756 GTAGGAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
19 1 0.03
20 10 0.27
21 11 0.30
22 15 0.41
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.35
Consensus pattern (19 bp):
ATACTAATATAAAATATAT
Found at i:7839197 original size:17 final size:16
Alignment explanation
Indices: 7839175--7839219 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
7839165 AATACTTCAC
7839175 AAATATATATATACTAA
1 AAATATATATATAC-AA
*
7839192 AAATATACATA-ACAA
1 AAATATATATATACAA
*
7839207 TAATATATATATA
1 AAATATATATATA
7839220 TGTATATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 11 0.46
16 3 0.12
17 10 0.42
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATATATATATACAA
Found at i:7841101 original size:88 final size:88
Alignment explanation
Indices: 7841009--7841175 Score: 194
Period size: 88 Copynumber: 1.9 Consensus size: 88
7840999 ACTAGACATT
* * * * * *
7841009 AAAAACAAAAATTGAGAATAGCTC-AGCACGTGAGCTAAGGCTCAACTCACCTATCGCAATATGA
1 AAAAACAAAAATTGAAAATACCTCGA-CACGTAACCCAAGGCTCAACTCACCTATCGCAATATAA
7841073 G-TAGATTTTTGAAAACAGAATTCA
65 GTTA-ATTTTTGAAAACAGAATTCA
* * ** * *
7841097 AAAAATAGATTTTGAAAATACCTCGACACGTAACCCGAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACAAAAATTGAAAATACCTCGACACGTAACCCAAGGCTCAACTCACCTATCGCAATATAAG
7841162 TTAATTTTTGAAAA
66 TTAATTTTTGAAAA
7841176 ATATAAATTG
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
88 62 0.95
89 3 0.05
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.25
Consensus pattern (88 bp):
AAAAACAAAAATTGAAAATACCTCGACACGTAACCCAAGGCTCAACTCACCTATCGCAATATAAG
TTAATTTTTGAAAACAGAATTCA
Found at i:7841193 original size:16 final size:16
Alignment explanation
Indices: 7841172--7841205 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7841162 TTAATTTTTG
*
7841172 AAAAATATAAATTGAA
1 AAAAATAGAAATTGAA
7841188 AAAAATAGAAATTGAA
1 AAAAATAGAAATTGAA
7841204 AA
1 AA
7841206 CACCTCAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (16 bp):
AAAAATAGAAATTGAA
Found at i:7841258 original size:89 final size:88
Alignment explanation
Indices: 7841046--7841259 Score: 252
Period size: 89 Copynumber: 2.4 Consensus size: 88
7841036 ACGTGAGCTA
* * * * **
7841046 AGGCTCAACTCACCTATCGCAATATGAGTAGATTTTTGAAAACAGAATTCAAAAAATAGATTTTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAATTAAAAAAATAGAAATTG
*
7841111 AAAATACCTCGACACGTAACCCG
66 AAAACACCTCGACACGTAACCCG
* * *
7841134 AGGCTCAACTCACCTCTCGCAATATAAGTTAATTTTTGAAAAATATAAATTGAAAAAAATAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACA-AAATT-AAAAAAATAGAAA
* ** *
7841199 TTGAAAACACCTC-A-ACTTGTCCTG
63 TTGAAAACACCTCGACACGTAACCCG
*
7841223 AGGCTCAACTCACCTCTCGCAATATGTGTTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
7841260 TTGAAAAGCA
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
88 34 0.32
89 45 0.42
90 5 0.05
91 22 0.21
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.29
Consensus pattern (88 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAAATTAAAAAAATAGAAATTG
AAAACACCTCGACACGTAACCCG
Found at i:7841390 original size:73 final size:77
Alignment explanation
Indices: 7841194--7841413 Score: 268
Period size: 73 Copynumber: 2.9 Consensus size: 77
7841184 TGAAAAAAAT
* * *
7841194 AGAAATTGAAAACACCTCAACTTGTCCTGAGGCTCAACTCACCTCTCGCAATATGTGTTGATTTT
1 AGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
7841259 TTTGAAAAGCAGAAGC
64 TTTG--AAGCAGAAGC
* * * * * *
7841275 AAAAATTGAAAATAACTCAGCGTGCCCTGAGGCTTAACTCACCTCTCACAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
7841340 TG-A-CA-AA-C
66 TGAAGCAGAAGC
* * *
7841348 AGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAATTCACCTCTCGCAATATAAGTTGATTTT
1 AGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
7841413 T
66 T
7841414 TTTAAACATA
Statistics
Matches: 121, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
73 58 0.48
74 2 0.02
75 2 0.02
76 1 0.01
79 6 0.05
81 52 0.43
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.30
Consensus pattern (77 bp):
AGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TGAAGCAGAAGC
Found at i:7841508 original size:87 final size:87
Alignment explanation
Indices: 7841344--7841519 Score: 219
Period size: 87 Copynumber: 2.0 Consensus size: 87
7841334 GATTTTTGAC
* * * * * *
7841344 AAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAATTCACCTCTCGCAATATAAGTTGA
1 AAACAAAAATTGAAATTACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCACAATATAAGTCGA
*** *
7841409 TTTTTTTTAAACATAAATTAAA
66 TTTTTGAAAAACAGAAATTAAA
* *
7841431 AAACAAAAATTGAACA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTCG
1 AAACAAAAATTGAA-ATTACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCACAATATAAGTCG
*
7841495 ATTTTTGAAAAACAGAAATTGAA
65 ATTTTTGAAAAACAGAAATTAAA
7841518 AA
1 AA
7841520 TACCTCAGCG
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
87 74 0.99
88 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (87 bp):
AAACAAAAATTGAAATTACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCACAATATAAGTCGA
TTTTTGAAAAACAGAAATTAAA
Found at i:7841512 original size:160 final size:155
Alignment explanation
Indices: 7841188--7841573 Score: 540
Period size: 160 Copynumber: 2.5 Consensus size: 155
7841178 ATAAATTGAA
* * * *
7841188 AAAAATAGAAATTGAAAACACCTCAACTTGTCCTGAGGCTCAACTCACCTCTCGCAATATGTGTT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * * *
7841253 GA-TTTTTTTGAAAAGCAGAAGCAAAAATTGAAAATAACTCAGCGTGCCCTGAGGCTTAACTCAC
66 GATTTTTTTTCAAAAGAAAAAACAAAAATTGAAAATAACTCAGCGTGCCCCGAGGCTCAACTCAC
*
7841317 CTCTCACAATATGAGTTGATTTTTG
131 CTCTCACAATATGAGTCGATTTTTG
* * * *
7841342 ACAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAATTCACCTCTCGCAATATAAGTT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
7841407 GATTTTTTTTAAACATAAATTAAAAAACAAAAATTGAACATACCTCAGCGTGCCCCGAGGCTCAA
66 GATTTTTTTT---CA-AAA-GAAAAAACAAAAATTGAAAATAACTCAGCGTGCCCCGAGGCTCAA
7841472 CTCACCTCTCACAATATGAGTCGATTTTTG
126 CTCACCTCTCACAATATGAGTCGATTTTTG
* *
7841502 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
7841567 GATTTTT
66 GATTTTT
7841574 AAAAACAGAA
Statistics
Matches: 202, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
154 59 0.29
155 7 0.03
158 1 0.00
159 3 0.01
160 132 0.65
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (155 bp):
AAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTTCAAAAGAAAAAACAAAAATTGAAAATAACTCAGCGTGCCCCGAGGCTCAACTCAC
CTCTCACAATATGAGTCGATTTTTG
Found at i:7841548 original size:73 final size:72
Alignment explanation
Indices: 7841429--7841585 Score: 242
Period size: 73 Copynumber: 2.2 Consensus size: 72
7841419 ACATAAATTA
* * *
7841429 AAAAACAAAAATTGAACATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTC
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACATCTCACAATATGAGTC
7841494 GATTTTT
66 GATTTTT
* * *
7841501 GAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGT
1 -AAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACATCTCACAATATGAGT
*
7841566 TGATTTTT
65 CGATTTTT
7841574 AAAAACAGAAAT
1 AAAAACAGAAAT
7841586 AAAAATATCA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
72 12 0.16
73 65 0.84
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.24
Consensus pattern (72 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACATCTCACAATATGAGTC
GATTTTT
Found at i:7853745 original size:11 final size:11
Alignment explanation
Indices: 7853729--7853757 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7853719 GTAATGTTAA
7853729 AATATATACAT
1 AATATATACAT
7853740 AATATATACAT
1 AATATATACAT
7853751 -ATATATA
1 AATATATA
7853758 AAATAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (11 bp):
AATATATACAT
Found at i:7853868 original size:19 final size:20
Alignment explanation
Indices: 7853807--7853873 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 20
7853797 AAATATATAC
7853807 ATAATAA-TATTAA-AATAAA
1 ATAATAAGTA-TAATAATAAA
*
7853826 ATAATAAGTGATAATAGTGAAA
1 ATAATAAGT-ATAATAAT-AAA
7853848 ATAATAAGTATAATAATAAA
1 ATAATAAGTATAATAATAAA
7853868 TATAAT
1 -ATAAT
7853874 GATATACGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 7 0.17
20 7 0.17
21 15 0.37
22 12 0.29
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.31
Consensus pattern (20 bp):
ATAATAAGTATAATAATAAA
Found at i:7853946 original size:21 final size:21
Alignment explanation
Indices: 7853888--7853952 Score: 55
Period size: 21 Copynumber: 3.1 Consensus size: 21
7853878 TACGAAAATA
*
7853888 ATACT-ATATATAA-AATATGT
1 ATACTAATAT-TAATAATATAT
* *
7853908 ATAC-AAGAATAATAAATATAT
1 ATACTAATATTAAT-AATATAT
*
7853929 ATACTAATATTAATAATAAAT
1 ATACTAATATTAATAATATAT
7853950 ATA
1 ATA
7853953 GTAGGAATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
19 3 0.09
20 6 0.17
21 19 0.54
22 7 0.20
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (21 bp):
ATACTAATATTAATAATATAT
Found at i:7854140 original size:21 final size:21
Alignment explanation
Indices: 7854108--7854150 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
7854098 ATTGAAAATG
*
7854108 TATACATAATATATATAAACA
1 TATACATAATATACATAAACA
*
7854129 TATACGAT-ATATACATATACA
1 TATAC-ATAATATACATAAACA
7854150 T
1 T
7854151 TAGAAATGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.35
Consensus pattern (21 bp):
TATACATAATATACATAAACA
Found at i:7856794 original size:70 final size:70
Alignment explanation
Indices: 7856662--7856796 Score: 155
Period size: 70 Copynumber: 1.9 Consensus size: 70
7856652 AAATTTTTGG
* * *** * * *
7856662 GGAATTCTCTTGAAGTTTACCCTGTTGGAAGTTAGTACTTGTGTTATTTTTCTGTATATATTTTT
1 GGAATTCTCTTGAAGTTCACCCTGTTGGAAGGTAGTACTCAAGTTACTTTTCTGAAGATATTTTT
7856727 GGGGT
66 GGGGT
* * *
7856732 GGAATTCTCTTGAAGTTCATCCTGTTGGAAGGTAGTTCTCAAGTT-CTTTTCTGAACGCTATTTT
1 GGAATTCTCTTGAAGTTCACCCTGTTGGAAGGTAGTACTCAAGTTACTTTTCTGAA-GATATTTT
7856796 T
65 T
7856797 TCCCCCTTCG
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
69 8 0.15
70 45 0.85
ACGTcount: A:0.19, C:0.13, G:0.21, T:0.46
Consensus pattern (70 bp):
GGAATTCTCTTGAAGTTCACCCTGTTGGAAGGTAGTACTCAAGTTACTTTTCTGAAGATATTTTT
GGGGT
Found at i:7860649 original size:15 final size:16
Alignment explanation
Indices: 7860608--7860652 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
7860598 TATTATTGTC
*
7860608 AAGATTCATTTGTTTAA
1 AAGATTAATTT-TTTAA
*
7860625 AAGCTTAATTTTTTAA
1 AAGATTAATTTTTTAA
7860641 AA-ATTAATTTTT
1 AAGATTAATTTTT
7860653 AATTTTTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 9 0.36
16 7 0.28
17 9 0.36
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.51
Consensus pattern (16 bp):
AAGATTAATTTTTTAA
Found at i:7860688 original size:20 final size:19
Alignment explanation
Indices: 7860663--7860703 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
7860653 AATTTTTTAT
* *
7860663 AAATTTTTAAAATATTATTA
1 AAATTTATAAAA-AATATTA
7860683 AAATTTATAAAAAATATTA
1 AAATTTATAAAAAATATTA
7860702 AA
1 AA
7860704 TAAATTTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
AAATTTATAAAAAATATTA
Found at i:7861334 original size:21 final size:22
Alignment explanation
Indices: 7861310--7861365 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
7861300 GAAATTTATT
* *
7861310 TAATATTTTTATACATTT-TAA
1 TAATATTTTTATAAATTTAAAA
7861331 TAAT-TTTTTATAAATTTAAAA
1 TAATATTTTTATAAATTTAAAA
*
7861352 TAA-ATTTTTTTAAA
1 TAATATTTTTATAAA
7861366 AAAAAATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATATTTTTATAAATTTAAAA
Found at i:7861340 original size:20 final size:21
Alignment explanation
Indices: 7861310--7861365 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
7861300 GAAATTTATT
* *
7861310 TAATATTTTTATACATTT-TAA
1 TAAT-TTTTTATAAATTTAAAA
7861331 TAATTTTTTATAAATTTAAAA
1 TAATTTTTTATAAATTTAAAA
7861352 TAAATTTTTT-TAAA
1 T-AATTTTTTATAAA
7861366 AAAAAATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.39
21 11 0.35
22 8 0.26
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
TAATTTTTTATAAATTTAAAA
Found at i:7865398 original size:13 final size:13
Alignment explanation
Indices: 7865380--7865407 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7865370 TAATCTTACC
7865380 TTACCAACCACTT
1 TTACCAACCACTT
7865393 TTACCAACCACTT
1 TTACCAACCACTT
7865406 TT
1 TT
7865408 TTTTGGGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.36, G:0.00, T:0.36
Consensus pattern (13 bp):
TTACCAACCACTT
Found at i:7874406 original size:15 final size:15
Alignment explanation
Indices: 7874386--7874416 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7874376 AAAACAATTC
7874386 CAAAGTTGTTATTAG
1 CAAAGTTGTTATTAG
7874401 CAAAGTTGTTATTAG
1 CAAAGTTGTTATTAG
7874416 C
1 C
7874417 TTTGGACAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (15 bp):
CAAAGTTGTTATTAG
Found at i:7875179 original size:27 final size:27
Alignment explanation
Indices: 7875141--7875192 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
7875131 CAAAAGCCGT
*
7875141 TTGTGCCTCTGGCAGAGGCGACACCGG
1 TTGTGCCTCTGGCAAAGGCGACACCGG
*
7875168 TTGTGCCTCTGGCAAAGGCGGCACC
1 TTGTGCCTCTGGCAAAGGCGACACC
7875193 TCGTTTGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19
Consensus pattern (27 bp):
TTGTGCCTCTGGCAAAGGCGACACCGG
Found at i:7875224 original size:3 final size:3
Alignment explanation
Indices: 7875218--7875286 Score: 52
Period size: 3 Copynumber: 22.7 Consensus size: 3
7875208 GGTTGGGGAC
* * *
7875218 CTT CTT CTT CTT C-T CTT CTC CTT -TT TTT CTT GCTC CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT -CTT CTT CTT CTT
* *
7875262 CTT CTC CTT GCTG CTT CTT GCTT CT
1 CTT CTT CTT -CTT CTT CTT -CTT CT
7875287 GCTGCTGAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
2 4 0.08
3 41 0.79
4 7 0.13
ACGTcount: A:0.00, C:0.35, G:0.06, T:0.59
Consensus pattern (3 bp):
CTT
Found at i:7875280 original size:32 final size:29
Alignment explanation
Indices: 7875224--7875283 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
7875214 GGACCTTCTT
**
7875224 CTTCTTCTCTTCTCCTTTTTTTCTTGCTC
1 CTTCTTCTCTTCTCCTTTGCTTCTTGCTC
7875253 CTTCTTCTTCTTCTCCTTGCTGCTTCTTGCT
1 CTTCTTC-TCTTCTCCTT--TGCTTCTTGCT
7875284 TCTGCTGCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 7 0.27
30 10 0.38
32 9 0.35
ACGTcount: A:0.00, C:0.35, G:0.07, T:0.58
Consensus pattern (29 bp):
CTTCTTCTCTTCTCCTTTGCTTCTTGCTC
Found at i:7882073 original size:21 final size:22
Alignment explanation
Indices: 7882048--7882089 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
7882038 GATAAAATTA
*
7882048 AATCTCGAAACTCAAA-ATAAT
1 AATCTCAAAACTCAAATATAAT
*
7882069 AATCTCAAAACTTAAATATAA
1 AATCTCAAAACTCAAATATAA
7882090 AATTCTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.55, C:0.17, G:0.02, T:0.26
Consensus pattern (22 bp):
AATCTCAAAACTCAAATATAAT
Found at i:7882509 original size:20 final size:19
Alignment explanation
Indices: 7882484--7882528 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
7882474 CGAAAAATAA
7882484 TTTCTGAAAAATGATTTACT
1 TTTCTG-AAAATGATTTACT
*
7882504 TTTCTGGAAATGATTTACT
1 TTTCTGAAAATGATTTACT
7882523 TTTCTG
1 TTTCTG
7882529 GTGTTTGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (19 bp):
TTTCTGAAAATGATTTACT
Found at i:7882516 original size:19 final size:19
Alignment explanation
Indices: 7882492--7882529 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7882482 AATTTCTGAA
7882492 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
7882511 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
7882530 TGTTTGGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (19 bp):
AAATGATTTACTTTTCTGG
Found at i:7882931 original size:16 final size:16
Alignment explanation
Indices: 7882907--7882942 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7882897 AATTTAATAC
7882907 AAAAATCCAAAACCAT
1 AAAAATCCAAAACCAT
* *
7882923 AAAATTCCAAAATCAT
1 AAAAATCCAAAACCAT
7882939 AAAA
1 AAAA
7882943 GAAAAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.19, G:0.00, T:0.17
Consensus pattern (16 bp):
AAAAATCCAAAACCAT
Found at i:7884825 original size:43 final size:43
Alignment explanation
Indices: 7884716--7884879 Score: 163
Period size: 43 Copynumber: 3.8 Consensus size: 43
7884706 TATCGAGATG
* * **
7884716 TGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTGA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATATT-A
*
7884760 -GATTAAGTGTAAGACCATGTCTGGGACATTGGCATCATATTA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATATTA
* * * *
7884802 TGATTTCGTGTAAGACCATGTCTGAGACAGTGACATCA-ATATA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATAT-TA
* * * * *
7884845 TGATAACATATAAGACCATATCTGGGATA-TGGCAT
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCAT
7884880 TGTGCGAGCT
Statistics
Matches: 100, Mismatches: 18, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
42 8 0.08
43 92 0.92
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATATTA
Found at i:7888151 original size:32 final size:32
Alignment explanation
Indices: 7888064--7888192 Score: 152
Period size: 32 Copynumber: 4.0 Consensus size: 32
7888054 TTTCTGAGTG
* * **
7888064 GTACACACAAAGTATACCTTTCCTTTTCATA-T
1 GTACACACAAAGTGTACATAACCTTTTCA-AGT
* * * *
7888096 GGTATACACAAAGTATACCTAACCTTTCCAAGT
1 -GTACACACAAAGTGTACATAACCTTTTCAAGT
7888129 GTACACACAAAGTGTACATAACCTTTTCAAGT
1 GTACACACAAAGTGTACATAACCTTTTCAAGT
*
7888161 GTACATACAAAGTGTACATAACCTTTTCAAGT
1 GTACACACAAAGTGTACATAACCTTTTCAAGT
7888193 TTCAAGTTGT
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
32 60 0.70
33 26 0.30
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.31
Consensus pattern (32 bp):
GTACACACAAAGTGTACATAACCTTTTCAAGT
Found at i:7890847 original size:13 final size:13
Alignment explanation
Indices: 7890829--7890854 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7890819 TGTGAAAAAT
7890829 AAAATAAAATAAA
1 AAAATAAAATAAA
7890842 AAAATAAAATAAA
1 AAAATAAAATAAA
7890855 GAACACACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAATAAAATAAA
Found at i:7893966 original size:46 final size:46
Alignment explanation
Indices: 7893833--7893967 Score: 162
Period size: 46 Copynumber: 2.9 Consensus size: 46
7893823 TTTGACATGA
* * * * * ** *
7893833 TGCCATAGTGTCTTTCAACTATAGTCTTACTCATTTTCTGCCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTATATCACGT
* * *
7893879 TGCCATGGTATCTTTCAATCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTATATCACGT
*
7893925 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTATATCA
7893968 GAGAGCACAC
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTATATCACGT
Found at i:7895796 original size:11 final size:11
Alignment explanation
Indices: 7895780--7895835 Score: 60
Period size: 11 Copynumber: 5.2 Consensus size: 11
7895770 CTTTATATAC
7895780 TAATAAAATAA
1 TAATAAAATAA
7895791 TAATAAAATAA
1 TAATAAAATAA
* **
7895802 TAA-AATATCT
1 TAATAAAATAA
* *
7895812 TATTAAAATAT
1 TAATAAAATAA
7895823 TAATAAAATAA
1 TAATAAAATAA
7895834 TA
1 TA
7895836 TTTATATAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
10 6 0.17
11 30 0.83
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:7895845 original size:43 final size:41
Alignment explanation
Indices: 7895780--7895863 Score: 105
Period size: 43 Copynumber: 2.0 Consensus size: 41
7895770 CTTTATATAC
*
7895780 TAATAAAATAATAATAAAATAATAAAATATCTTATTAAAATAT
1 TAATAAAATAATAATAAAATAATAAAATA-ATTA-TAAAATAT
* * * *
7895823 TAATAAAATAATATTTATATAATTAAATAATTATAAAATAT
1 TAATAAAATAATAATAAAATAATAAAATAATTATAAAATAT
7895864 CAAAATATCT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
41 8 0.22
42 3 0.08
43 25 0.69
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (41 bp):
TAATAAAATAATAATAAAATAATAAAATAATTATAAAATAT
Found at i:7905119 original size:23 final size:24
Alignment explanation
Indices: 7905075--7905120 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
7905065 AGCTTTGGAT
* *
7905075 AGCCATATAACAGGATGTTCAAGTG
1 AGCCATAT-ACAGGAAGCTCAAGTG
7905100 AGCCATAT-CAGGAAGCTCAAG
1 AGCCATATACAGGAAGCTCAAG
7905121 AAGAGCATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.20
Consensus pattern (24 bp):
AGCCATATACAGGAAGCTCAAGTG
Found at i:7905142 original size:25 final size:25
Alignment explanation
Indices: 7905104--7905151 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
7905094 CAAGTGAGCC
7905104 ATATCAGGAAGCTCA-AGAAGAGCAT
1 ATATCAGGAAGCTCATA-AAGAGCAT
* *
7905129 ATATCTGGACGCTCATAAAGAGC
1 ATATCAGGAAGCTCATAAAGAGC
7905152 TGTATTTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.19
Consensus pattern (25 bp):
ATATCAGGAAGCTCATAAAGAGCAT
Found at i:7911267 original size:128 final size:129
Alignment explanation
Indices: 7911110--7911368 Score: 457
Period size: 129 Copynumber: 2.0 Consensus size: 129
7911100 TCCTCCCAAG
*
7911110 TTTCTGAGAAAATAAATATGAAATTAATTTAGTATA-TAATACATTTATTTCTTAGTAAAATAAA
1 TTTCTGAGAAAATAAATATGAAATTAATTTAGTATATTAATACATTTATTTATTAGTAAAATAAA
*
7911174 GGGCATACTATCCCGTTAGTCACTCTAAATAGTGGTCGTTCCTATTTTGGTCATCCCATTTTTT
66 GGGCAAACTATCCCGTTAGTCACTCTAAATAGTGGTCGTTCCTATTTTGGTCATCCCATTTTTT
*
7911238 TTTCTGAGAAAATAAATATGAAATTAATTTAGTATATTAATGCATTTATTTATTAGTAAAATAAA
1 TTTCTGAGAAAATAAATATGAAATTAATTTAGTATATTAATACATTTATTTATTAGTAAAATAAA
* * *
7911303 GGGCAAACTATCTCGTTAGTTACTCTAAATAGTGGTCGTTCCTATTTTGGTCATCTCATTTTTT
66 GGGCAAACTATCCCGTTAGTCACTCTAAATAGTGGTCGTTCCTATTTTGGTCATCCCATTTTTT
7911367 TT
1 TT
7911369 GTTAATTTAG
Statistics
Matches: 124, Mismatches: 6, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
128 36 0.29
129 88 0.71
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (129 bp):
TTTCTGAGAAAATAAATATGAAATTAATTTAGTATATTAATACATTTATTTATTAGTAAAATAAA
GGGCAAACTATCCCGTTAGTCACTCTAAATAGTGGTCGTTCCTATTTTGGTCATCCCATTTTTT
Found at i:7918270 original size:24 final size:24
Alignment explanation
Indices: 7918237--7918290 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
7918227 TTATAAAAAT
*
7918237 TTTAGGTTTAAAATTTGA-TTTTC
1 TTTAGATTTAAAATTTGATTTTTC
7918260 GTTTAGATTTAAAATTTGATTTTTC
1 -TTTAGATTTAAAATTTGATTTTTC
7918285 TTTAGA
1 TTTAGA
7918291 ATAAAGAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 23 0.82
25 5 0.18
ACGTcount: A:0.28, C:0.04, G:0.13, T:0.56
Consensus pattern (24 bp):
TTTAGATTTAAAATTTGATTTTTC
Found at i:7918470 original size:15 final size:15
Alignment explanation
Indices: 7918425--7918490 Score: 60
Period size: 15 Copynumber: 4.3 Consensus size: 15
7918415 ATAACTTAAA
* *
7918425 TTCAATACTTAAATT
1 TTCAACACTTAATTT
* *
7918440 TTCAATATTTAATTT
1 TTCAACACTTAATTT
*
7918455 TTCAACACTTATTTTT
1 TTCAACACTTA-ATTT
*
7918471 GTTCGACACTTAATTT
1 -TTCAACACTTAATTT
7918487 TTCA
1 TTCA
7918491 GTTTATCAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
15 25 0.61
16 6 0.15
17 10 0.24
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.52
Consensus pattern (15 bp):
TTCAACACTTAATTT
Found at i:7941191 original size:32 final size:32
Alignment explanation
Indices: 7941150--7941227 Score: 113
Period size: 32 Copynumber: 2.4 Consensus size: 32
7941140 GGAGGGTGGC
*
7941150 CGTGTGGGCCACA-GGAGCTAGGCCAAATTGGG
1 CGTGTGGGCCACACGG-GCTAGGCCAAATTAGG
7941182 CGTGTGGGCCACACGGGCTAGGCCAAATTAGG
1 CGTGTGGGCCACACGGGCTAGGCCAAATTAGG
* *
7941214 CATGTGGGCTACAC
1 CGTGTGGGCCACAC
7941228 TGAGGTGTGG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
32 40 0.95
33 2 0.05
ACGTcount: A:0.22, C:0.24, G:0.37, T:0.17
Consensus pattern (32 bp):
CGTGTGGGCCACACGGGCTAGGCCAAATTAGG
Found at i:7948502 original size:28 final size:29
Alignment explanation
Indices: 7948357--7948503 Score: 88
Period size: 28 Copynumber: 5.2 Consensus size: 29
7948347 AAAAGCGTCC
* ** *
7948357 TTTAACAGAGATTGTTACAAATGTTTCCT
1 TTTAATAGAGATTGCCACAAAGGTTTCCT
* * ** *
7948386 TTTAATAGAGATAGTCATGAAGGATTT-AT
1 TTTAATAGAGATTGCCACAAAGG-TTTCCT
* * * * *
7948415 ATTAACAGAGATCG-TACGAAGGATTT-CT
1 TTTAATAGAGATTGCCACAAAGG-TTTCCT
* * *
7948443 TTTACTAGAGATTGCCATAAAGGTTTTC-
1 TTTAATAGAGATTGCCACAAAGGTTTCCT
7948471 TTTAATAGAGATTGCCACAAA-GTTTCCT
1 TTTAATAGAGATTGCCACAAAGGTTTCCT
7948499 TTTAA
1 TTTAA
7948504 CGAGGTCACC
Statistics
Matches: 91, Mismatches: 23, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
27 5 0.05
28 48 0.53
29 35 0.38
30 3 0.03
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.37
Consensus pattern (29 bp):
TTTAATAGAGATTGCCACAAAGGTTTCCT
Found at i:7953485 original size:3 final size:3
Alignment explanation
Indices: 7953477--7953594 Score: 50
Period size: 3 Copynumber: 38.7 Consensus size: 3
7953467 TATTTATTTC
* * * *
7953477 TAT TAT TA- TAT ATAT AAAT TAT TAT TAT TAT T-T GTTT TAT TTT TAA
1 TAT TAT TAT TAT -TAT TA-T TAT TAT TAT TAT TAT -TAT TAT TAT TAT
** * *
7953523 CCT TAT TTT TA- TAT TAT ATAT TA- TAT AAT TAT T-T TAT TAT ATAT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT -TAT
7953567 TAT T-T ATAT TAT TATT TAT TAT ATAT TA
1 TAT TAT -TAT TAT TA-T TAT TAT -TAT TA
7953595 CTTTTCACGA
Statistics
Matches: 86, Mismatches: 15, Indels: 28
0.67 0.12 0.22
Matches are distributed among these distances:
2 10 0.12
3 57 0.66
4 19 0.22
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:7953544 original size:7 final size:7
Alignment explanation
Indices: 7953532--7953594 Score: 67
Period size: 7 Copynumber: 9.0 Consensus size: 7
7953522 ACCTTATTTT
7953532 TATATTA
1 TATATTA
7953539 TATATTA
1 TATATTA
7953546 TATAATTA
1 TAT-ATTA
*
7953554 TTTTATTA
1 -TATATTA
7953562 TATATTA
1 TATATTA
*
7953569 TTTA-TA
1 TATATTA
7953575 T-TATTA
1 TATATTA
*
7953581 TTTATTA
1 TATATTA
7953588 TATATTA
1 TATATTA
7953595 CTTTTCACGA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
5 2 0.04
6 6 0.12
7 30 0.62
8 8 0.17
9 2 0.04
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (7 bp):
TATATTA
Found at i:7953560 original size:23 final size:26
Alignment explanation
Indices: 7953525--7953594 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 26
7953515 ATTTTTAACC
*
7953525 TTATTTTTATATTATATATTATATA-A
1 TTATTATT-TATTATATATTATATATA
*
7953551 TTA-T-TTTATTATATATTATTTATA
1 TTATTATTTATTATATATTATATATA
7953575 TTATTATTTATTATATATTA
1 TTATTATTTATTATATATTA
7953595 CTTTTCACGA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
23 15 0.38
24 6 0.15
25 2 0.05
26 17 0.43
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (26 bp):
TTATTATTTATTATATATTATATATA
Found at i:7953562 original size:16 final size:16
Alignment explanation
Indices: 7953534--7953594 Score: 72
Period size: 16 Copynumber: 3.7 Consensus size: 16
7953524 CTTATTTTTA
7953534 TATTATATATTATATAAT
1 TATT-TATATTATAT-AT
7953552 TATTT-TATTATATAT
1 TATTTATATTATATAT
7953567 TATTTATATTAT-TATT
1 TATTTATATTATATA-T
7953583 TATTATATATTA
1 TATT-TATATTA
7953595 CTTTTCACGA
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
15 9 0.22
16 19 0.47
17 8 0.20
18 4 0.10
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTTATATTATATAT
Found at i:7953570 original size:26 final size:26
Alignment explanation
Indices: 7953525--7953697 Score: 90
Period size: 26 Copynumber: 6.4 Consensus size: 26
7953515 ATTTTTAACC
7953525 TTATTT-TTATAT-TATATATTATATAA
1 TTATTTATTATATAT-TAT-TTATATAA
*
7953551 TTATTTTATTATATATTATTTATATTA
1 TTA-TTTATTATATATTATTTATATAA
* *
7953578 TTATTTATTATATATTACTTTTCACGAAATA
1 TTATTTATTATATATTA--TTT-A-TATA-A
* *
7953609 TTATTATTTTACATTATTATTTATAT-A
1 TTATT-TATTATA-TATTATTTATATAA
* * *
7953636 TTA-TTATTATATTTTTACTTGTATAA
1 TTATTTATTATA-TATTATTTATATAA
*
7953662 TATATTTA-T-TA-ATCATTTATATATA
1 T-TATTTATTATATATTATTTATATA-A
*
7953687 TTATATATTAT
1 TTATTTATTAT
7953698 TTTTGCATAT
Statistics
Matches: 113, Mismatches: 18, Indels: 32
0.69 0.11 0.20
Matches are distributed among these distances:
24 13 0.12
25 18 0.16
26 23 0.20
27 20 0.18
28 15 0.13
29 3 0.03
30 2 0.02
31 9 0.08
32 5 0.04
33 5 0.04
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.60
Consensus pattern (26 bp):
TTATTTATTATATATTATTTATATAA
Found at i:7953741 original size:16 final size:16
Alignment explanation
Indices: 7953717--7953785 Score: 52
Period size: 16 Copynumber: 4.2 Consensus size: 16
7953707 TATACTTTCA
*
7953717 TATTATATATTATAAT
1 TATTTTATATTATAAT
*
7953733 TATTTTATATTAT-GT
1 TATTTTATATTATAAT
* *
7953748 TATTTTTATACTATTA-
1 TA-TTTTATATTATAAT
*
7953764 TATTTTTTATCTATATAT
1 TATTTTATAT-TATA-AT
7953782 TATT
1 TATT
7953786 ATCATTAAAC
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
15 9 0.22
16 27 0.66
17 1 0.02
18 4 0.10
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (16 bp):
TATTTTATATTATAAT
Found at i:7953785 original size:34 final size:34
Alignment explanation
Indices: 7953719--7953785 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
7953709 TACTTTCATA
*
7953719 TTATATATTATAATTATTTTATATTATGTTATTT
1 TTATATATTATAATTATTTTATATTATATTATTT
*
7953753 TTATACTATTAT-ATT-TTTTATCTATATATTATT
1 TTATA-TATTATAATTATTTTATAT-TATATTATT
7953786 ATCATTAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 7 0.24
34 16 0.55
35 6 0.21
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (34 bp):
TTATATATTATAATTATTTTATATTATATTATTT
Found at i:7954048 original size:18 final size:19
Alignment explanation
Indices: 7954027--7954073 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
7954017 TTCTAAACCA
7954027 ATATATTTTTTATT-TTAT
1 ATATATTTTTTATTCTTAT
* * *
7954045 ATATAATTATTATTCTTTT
1 ATATATTTTTTATTCTTAT
*
7954064 ATAAATTTTT
1 ATATATTTTT
7954074 GTTATTATAT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
ATATATTTTTTATTCTTAT
Found at i:7972055 original size:46 final size:46
Alignment explanation
Indices: 7972008--7972373 Score: 491
Period size: 46 Copynumber: 8.0 Consensus size: 46
7971998 GCTCTCTGAT
* * *
7972008 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
7972054 ATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
7972100 ATGAAATGAATAAGAACATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
7972146 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
7972192 ATGAAATGTGTAAGACCATGGTTGAAAGATAACATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * *
7972238 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
7972284 ATGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
7972330 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
7972374 TCAAAGATAA
Statistics
Matches: 284, Mismatches: 35, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 1 0.00
46 283 1.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:7972675 original size:16 final size:17
Alignment explanation
Indices: 7972654--7972686 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7972644 ATGATGGTGC
7972654 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
*
7972670 ATGAAATGATTGCTATA
1 ATGAAATGATTGATATA
7972687 TACTAATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.03, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:7982412 original size:5 final size:5
Alignment explanation
Indices: 7982402--7982433 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
7982392 TCAGTGTGAA
7982402 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
7982434 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:7982427 original size:9 final size:9
Alignment explanation
Indices: 7982403--7982433 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
7982393 CAGTGTGAAA
7982403 AAATAAAAT
1 AAATAAAAT
7982412 AAAATAAAAT
1 -AAATAAAAT
7982422 AAATAAAAT
1 AAATAAAAT
7982431 AAA
1 AAA
7982434 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:7986866 original size:5 final size:5
Alignment explanation
Indices: 7986856--7986887 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
7986846 AATTTGTGAA
7986856 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
7986888 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:7986881 original size:9 final size:9
Alignment explanation
Indices: 7986857--7986887 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
7986847 ATTTGTGAAA
7986857 AAATAAAAT
1 AAATAAAAT
7986866 AAAATAAAAT
1 -AAATAAAAT
7986876 AAATAAAAT
1 AAATAAAAT
7986885 AAA
1 AAA
7986888 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:7994016 original size:16 final size:16
Alignment explanation
Indices: 7993997--7994052 Score: 71
Period size: 15 Copynumber: 3.6 Consensus size: 16
7993987 AATAAAAATG
*
7993997 TTTTAGATAATTTCTA
1 TTTTAGATCATTTCTA
*
7994013 TTTT-GGTCATTTCTA
1 TTTTAGATCATTTCTA
*
7994028 TTTTAGATCATTTATA
1 TTTTAGATCATTTCTA
7994044 TTTT-GATCA
1 TTTTAGATCA
7994053 CTTTTCGTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
15 18 0.51
16 17 0.49
ACGTcount: A:0.25, C:0.09, G:0.09, T:0.57
Consensus pattern (16 bp):
TTTTAGATCATTTCTA
Found at i:7995436 original size:16 final size:16
Alignment explanation
Indices: 7995412--7995445 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7995402 CATTATTCCA
7995412 AACAAGAGTTGTTCTC
1 AACAAGAGTTGTTCTC
*
7995428 AACAGGAGTTGTTCTC
1 AACAAGAGTTGTTCTC
7995444 AA
1 AA
7995446 GTAATAACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (16 bp):
AACAAGAGTTGTTCTC
Found at i:8001832 original size:17 final size:18
Alignment explanation
Indices: 8001810--8001853 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
8001800 TAATAAGAGT
8001810 TAATATTAAAT-TTAATC
1 TAATATTAAATATTAATC
* *
8001827 TAATATT-TATATTAATT
1 TAATATTAAATATTAATC
8001844 TAATATTAAA
1 TAATATTAAA
8001854 ATGATTAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 2 0.09
17 19 0.86
18 1 0.05
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATATTAAATATTAATC
Found at i:8023268 original size:13 final size:14
Alignment explanation
Indices: 8023241--8023269 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8023231 CTTCTTTGAG
8023241 AAAAATTTCTATAA
1 AAAAATTTCTATAA
8023255 AAAAATTTCT-TAA
1 AAAAATTTCTATAA
8023268 AA
1 AA
8023270 TTTTAATTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AAAAATTTCTATAA
Found at i:8024607 original size:19 final size:19
Alignment explanation
Indices: 8024583--8024619 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
8024573 ATCCCAAGAG
8024583 TGAGAACAATAGAAAAATT
1 TGAGAACAATAGAAAAATT
8024602 TGAGAACAATAGAAAAAT
1 TGAGAACAATAGAAAAAT
8024620 CAAAATTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.59, C:0.05, G:0.16, T:0.19
Consensus pattern (19 bp):
TGAGAACAATAGAAAAATT
Found at i:8026966 original size:6 final size:6
Alignment explanation
Indices: 8026955--8026980 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8026945 TTGTTATTGA
8026955 TAGTGC TAGTGC TAGTGC TAGTGC TA
1 TAGTGC TAGTGC TAGTGC TAGTGC TA
8026981 TTAAAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.15, G:0.31, T:0.35
Consensus pattern (6 bp):
TAGTGC
Found at i:8033075 original size:21 final size:23
Alignment explanation
Indices: 8033036--8033092 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
8033026 GTTTTAAAAT
* *
8033036 TTGGGCTCAGGTAGTTTTA-GG-A
1 TTGGGCT-AGGTTGGTTTAGGGTA
8033058 TTGGGCTAGGTTGGTTTAGGGTA
1 TTGGGCTAGGTTGGTTTAGGGTA
8033081 TTGGGCTAGGTT
1 TTGGGCTAGGTT
8033093 AGTTGGGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 9 0.29
22 9 0.29
23 13 0.42
ACGTcount: A:0.14, C:0.07, G:0.40, T:0.39
Consensus pattern (23 bp):
TTGGGCTAGGTTGGTTTAGGGTA
Found at i:8033999 original size:127 final size:126
Alignment explanation
Indices: 8033783--8034010 Score: 314
Period size: 127 Copynumber: 1.8 Consensus size: 126
8033773 GCACGTGAGT
*
8033783 AAAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAG
1 AAAGGCTCAACCCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAG
* *
8033848 CGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTGAAAAAGTAGAAATTA
66 CATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTA
* ** * * *
8033909 AAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAA-ACAGAAATTGAAATTACCTC
1 AAAGGCTCAACCCACCTCTCGCAATATGAGTTGA-AATT-AAAACACAAAAATTGAAAATACCTC
* * * *
8033973 ATCATGTCCTGAGGCTTAACTCACCTCTCGCAATATGA
64 AGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
8034011 ATTGAAAAAA
Statistics
Matches: 87, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
126 32 0.37
127 52 0.60
128 3 0.03
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (126 bp):
AAAGGCTCAACCCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAG
CATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTA
Found at i:8034143 original size:78 final size:76
Alignment explanation
Indices: 8034039--8034374 Score: 431
Period size: 71 Copynumber: 4.5 Consensus size: 76
8034029 AGTGTGTAAT
* ** * * *
8034039 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGATTTTATTTTGAAAACAGAAATTGAAAATAC
*
8034104 CTCAGCATGTGAAC
66 CTCAGC--GTG-TC
** * *
8034118 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTAATTTTTTTTTGAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGATTTTATTTTGAAAACAGAAATTGAAAATAC
*
8034182 CTCAACGTGTC
66 CTCAGCGTGTC
* *
8034193 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA----ATTTTGAAAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGATTTTATTTTGAAAACAGAAATTGAAAATAC
8034254 CTCAGCGTGTC
66 CTCAGCGTGTC
*
8034265 CTGAGGCTCAACTCATTTCTCGCAATAT-AGTTGA----ATTTTGAAAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGATTTTATTTTGAAAACAGAAATTGAAAATAC
8034325 CTCAGCGTGTC
66 CTCAGCGTGTC
*
8034336 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGATTTT
8034375 GAAAAACAAA
Statistics
Matches: 237, Mismatches: 14, Indels: 15
0.89 0.05 0.06
Matches are distributed among these distances:
71 71 0.30
72 67 0.28
75 1 0.00
76 33 0.14
78 64 0.27
79 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (76 bp):
CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGATTTTATTTTGAAAACAGAAATTGAAAATAC
CTCAGCGTGTC
Found at i:8034349 original size:143 final size:144
Alignment explanation
Indices: 8034079--8034392 Score: 422
Period size: 143 Copynumber: 2.2 Consensus size: 144
8034069 GTTGATTTTT
*
8034079 TTTTAAAAACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATA
1 TTTTGAAAACAGAAATTGAAAATACCTCAGCA-GTGAACCGAGGCTCAACTCACCTCTCGCAATA
*
8034144 TAAGTTAATTTTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAT
65 TAAGTTAA----TTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCAT
8034209 TTCTCGCAATATAAGTTGAA
126 TTCTCGCAATATAAGTTG-A
* * **
8034229 TTTTGAAAACAGAAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCAACTCATTTCTCGCAATA
1 TTTTGAAAACAGAAATTGAAAATACCTCAGCAGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
* *
8034292 T-AGTTGAA-TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTC
65 TAAGTT-AATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCATTTC
*
8034355 TCGCAATATGAGTTGA
129 TCGCAATATAAGTTGA
*
8034371 TTTTGAAAAACAAAAATT-AAAA
1 TTTTG-AAAACAGAAATTGAAAA
8034393 GGCTTAACTC
Statistics
Matches: 150, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
142 9 0.06
143 77 0.51
147 6 0.04
148 29 0.19
150 29 0.19
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.30
Consensus pattern (144 bp):
TTTTGAAAACAGAAATTGAAAATACCTCAGCAGTGAACCGAGGCTCAACTCACCTCTCGCAATAT
AAGTTAATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCATTTCTC
GCAATATAAGTTGA
Found at i:8034487 original size:122 final size:124
Alignment explanation
Indices: 8034268--8034502 Score: 323
Period size: 122 Copynumber: 1.9 Consensus size: 124
8034258 GCGTGTCCTG
** * * * *
8034268 AGGCTCAACTCATTTCTCGCAATATAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAGCGT
* * *
8034333 GTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 GCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
* * *
8034392 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACATAAACTAAAAATACCTCGGCG
1 AGGCTCAACTCACCTCTCGCAATAT-AGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAGCG
*
8034454 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAA
65 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAA
8034503 AAATTAAAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
122 67 0.69
123 3 0.03
124 25 0.26
125 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAGCGT
GCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
Found at i:8034511 original size:69 final size:71
Alignment explanation
Indices: 8034392--8034565 Score: 214
Period size: 69 Copynumber: 2.5 Consensus size: 71
8034382 AAAAATTAAA
* * * * **
8034392 AGGCTTAACTCACCTCTCGCAATATGAG-TCA-ATTTAAAACATAAACTAAAAATACCTCGGCGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACATAAACTAAAAATACCTCAACGT
8034455 GCCCCG
66 GCCCCG
*
8034461 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAA-A-AAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACATAAACTAAAAATACCTCAACGT
* **
8034524 GTCTTG
66 GCCCCG
8034530 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
8034566 CTTGGAAAGC
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
68 1 0.01
69 81 0.88
70 3 0.03
71 7 0.08
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.29
Consensus pattern (71 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACATAAACTAAAAATACCTCAACGT
GCCCCG
Found at i:8047792 original size:21 final size:23
Alignment explanation
Indices: 8047753--8047806 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
8047743 GTTTTAAAAT
*
8047753 TTGGGCTCAGGTAGTTTTA-GG-A
1 TTGGGCT-AGGTAGGTTTAGGGTA
*
8047775 TTGGGCTAGGTTGGTTTAGGGTA
1 TTGGGCTAGGTAGGTTTAGGGTA
8047798 TTGGGCTAG
1 TTGGGCTAG
8047807 ATTAGTTGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 9 0.32
22 9 0.32
23 10 0.36
ACGTcount: A:0.15, C:0.07, G:0.41, T:0.37
Consensus pattern (23 bp):
TTGGGCTAGGTAGGTTTAGGGTA
Found at i:8051244 original size:17 final size:18
Alignment explanation
Indices: 8051206--8051244 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8051196 TTAATAAATT
*
8051206 AATTTAAAAATATATATT
1 AATTTAAAAATATATATA
*
8051224 AATTTAAAAA-ATCTATA
1 AATTTAAAAATATATATA
8051241 AATT
1 AATT
8051245 AAACAACTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (18 bp):
AATTTAAAAATATATATA
Found at i:8052956 original size:19 final size:19
Alignment explanation
Indices: 8052918--8052980 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
8052908 TAAATTAATC
***
8052918 ATATATTTATTTTGGATAA
1 ATATATTTATTTTATTTAA
8052937 ATATATTTATTTTATTTAAA
1 ATATATTTATTTTATTT-AA
* ** *
8052957 ATAAATAAATATTATTTAA
1 ATATATTTATTTTATTTAA
8052976 ATATA
1 ATATA
8052981 AATAGATTAA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
19 20 0.57
20 15 0.43
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (19 bp):
ATATATTTATTTTATTTAA
Found at i:8056681 original size:26 final size:27
Alignment explanation
Indices: 8056652--8056712 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 27
8056642 AACAATTTTA
* *
8056652 AAAAAAAACTAAGTAAC-AAATAAATT
1 AAAAAAAACTAAATAACTAAATAAACT
* *
8056678 AAAAGAAA-TAAATAACTACATAAACT
1 AAAAAAAACTAAATAACTAAATAAACT
*
8056704 AAAATAAAC
1 AAAAAAAAC
8056713 AAACTCAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
25 7 0.25
26 21 0.75
ACGTcount: A:0.69, C:0.10, G:0.03, T:0.18
Consensus pattern (27 bp):
AAAAAAAACTAAATAACTAAATAAACT
Found at i:8064059 original size:56 final size:56
Alignment explanation
Indices: 8063973--8064085 Score: 217
Period size: 56 Copynumber: 2.0 Consensus size: 56
8063963 GAAAAATAGA
*
8063973 TAGCTATCTATTTTTCCTCCGAAATCTCTAAGAAGAAGATGTCGAGTGGAGAGCCC
1 TAGCTATCTATTTTTCCTCCGAAATCTCTAAGAAGAAGACGTCGAGTGGAGAGCCC
8064029 TAGCTATCTATTTTTCCTCCGAAATCTCTAAGAAGAAGACGTCGAGTGGAGAGCCC
1 TAGCTATCTATTTTTCCTCCGAAATCTCTAAGAAGAAGACGTCGAGTGGAGAGCCC
8064085 T
1 T
8064086 TTGGATGGTT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (56 bp):
TAGCTATCTATTTTTCCTCCGAAATCTCTAAGAAGAAGACGTCGAGTGGAGAGCCC
Found at i:8068761 original size:17 final size:17
Alignment explanation
Indices: 8068739--8068772 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8068729 TTTATTTCCC
*
8068739 ATATATTATTTATTTTA
1 ATATATTATTTACTTTA
*
8068756 ATATATTCTTTACTTTA
1 ATATATTATTTACTTTA
8068773 GATTATTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (17 bp):
ATATATTATTTACTTTA
Found at i:8069098 original size:26 final size:27
Alignment explanation
Indices: 8069069--8069125 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
8069059 TTTAAACTCC
*
8069069 TTTACATATTATTTATTTTAAA-TATT
1 TTTACATATTATTTACTTTAAACTATT
* *
8069095 TTTATATGTTATTTACTTTAAACTATT
1 TTTACATATTATTTACTTTAAACTATT
8069122 TTTA
1 TTTA
8069126 TTATATGTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 19 0.70
27 8 0.30
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (27 bp):
TTTACATATTATTTACTTTAAACTATT
Found at i:8069393 original size:25 final size:24
Alignment explanation
Indices: 8069355--8069417 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
8069345 ATATTATTTT
8069355 ATTGTTTTGAATATTAATGATTTTTAA
1 ATTGTTTT--ATATTAATGA-TTTTAA
* *
8069382 ATTGTTTTATATTATTTATTTTAA
1 ATTGTTTTATATTAATGATTTTAA
8069406 ATTGCTTTTATA
1 ATTG-TTTTATA
8069418 GTATCTATTC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 10 0.30
25 15 0.45
27 8 0.24
ACGTcount: A:0.30, C:0.02, G:0.08, T:0.60
Consensus pattern (24 bp):
ATTGTTTTATATTAATGATTTTAA
Found at i:8069408 original size:24 final size:25
Alignment explanation
Indices: 8069376--8069431 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
8069366 TATTAATGAT
* *
8069376 TTTTAAATTG-TTTTATATTATTTA
1 TTTTAAATTGCTTTTATAGTATCTA
8069400 TTTTAAATTGCTTTTATAGTATCTA
1 TTTTAAATTGCTTTTATAGTATCTA
*
8069425 TTCTAAA
1 TTTTAAA
8069432 CCTTTAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 10 0.36
25 18 0.64
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.59
Consensus pattern (25 bp):
TTTTAAATTGCTTTTATAGTATCTA
Found at i:8074115 original size:5 final size:5
Alignment explanation
Indices: 8074107--8074191 Score: 59
Period size: 5 Copynumber: 16.8 Consensus size: 5
8074097 TAAAAAAACA
* * * *
8074107 AAAAG AAAAG AAAAG AAAAG AAAAC ACAA- AAAA- AAAAC AACAAA AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AA-AAG AAAAG
* *
8074156 -AAGG AAAAAG AAACAAA AAAAG AAAAG AAAAG AAAA
1 AAAAG -AAAAG -AA-AAG AAAAG AAAAG AAAAG AAAA
8074192 AGGAGAGGCC
Statistics
Matches: 66, Mismatches: 9, Indels: 10
0.78 0.11 0.12
Matches are distributed among these distances:
4 10 0.15
5 42 0.64
6 12 0.18
7 2 0.03
ACGTcount: A:0.81, C:0.06, G:0.13, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:8074125 original size:22 final size:21
Alignment explanation
Indices: 8074100--8074192 Score: 82
Period size: 22 Copynumber: 4.2 Consensus size: 21
8074090 TTCACCTTAA
8074100 AAAAACAAAAAGAAAAGAAAAG
1 AAAAA-AAAAAGAAAAGAAAAG
* *
8074122 AAAAGAAAACACA-AAAAAAAAAC
1 AAAA-AAAA-A-AGAAAAGAAAAG
* *
8074145 AACAAAAAAAG-AAGGAAAAAG
1 AAAAAAAAAAGAAAAG-AAAAG
8074166 AAACAAAAAAAGAAAAGAAAAG
1 AAA-AAAAAAAGAAAAGAAAAG
8074188 AAAAA
1 AAAAA
8074193 GGAGAGGCCA
Statistics
Matches: 56, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
20 3 0.05
21 9 0.16
22 27 0.48
23 16 0.29
24 1 0.02
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (21 bp):
AAAAAAAAAAGAAAAGAAAAG
Found at i:8074155 original size:39 final size:37
Alignment explanation
Indices: 8074098--8074191 Score: 104
Period size: 39 Copynumber: 2.5 Consensus size: 37
8074088 TATTCACCTT
8074098 AAAAAAACAAAAAGAAAAGAAA-AGAAAAGAAAACACAAA
1 AAAAAAACAAAAAGAAAAGAAAGA-AAAAG-AAACA-AAA
*
8074137 AAAAAAACAACAAA-AAAAGAAGGAAAAAGAAACAAAA
1 AAAAAAACAA-AAAGAAAAGAAAGAAAAAGAAACAAAA
*
8074174 AAAGAAAA-GAAAAGAAAA
1 AAA-AAAACAAAAAGAAAA
8074192 AGGAGAGGCC
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
36 3 0.06
37 11 0.22
38 9 0.18
39 22 0.45
40 4 0.08
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (37 bp):
AAAAAAACAAAAAGAAAAGAAAGAAAAAGAAACAAAA
Found at i:8078651 original size:16 final size:17
Alignment explanation
Indices: 8078630--8078662 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8078620 TTTTGAATTC
8078630 TATATAAAT-TTTTAAA
1 TATATAAATATTTTAAA
*
8078646 TATATATATATTTTAAA
1 TATATAAATATTTTAAA
8078663 AAACTTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TATATAAATATTTTAAA
Found at i:8081628 original size:18 final size:18
Alignment explanation
Indices: 8081605--8081645 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
8081595 TTTTGAAATC
*
8081605 AAAATCAGATTGGGCTTT
1 AAAATCAGATTGGACTTT
* *
8081623 AAAATCAGTTTGGATTTT
1 AAAATCAGATTGGACTTT
8081641 AAAAT
1 AAAAT
8081646 TTGCTTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.37
Consensus pattern (18 bp):
AAAATCAGATTGGACTTT
Found at i:8082161 original size:20 final size:21
Alignment explanation
Indices: 8082130--8082171 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
8082120 TTTGAGCACC
8082130 AAAAATTAAAAAATAATTTTA
1 AAAAATTAAAAAATAATTTTA
8082151 AAAAATTAAAAAATAATTTTA
1 AAAAATTAAAAAATAATTTTA
8082172 TCTAGTGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAATTAAAAAATAATTTTA
Found at i:8086740 original size:24 final size:24
Alignment explanation
Indices: 8086708--8086753 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
8086698 CCTTGTTAAC
8086708 CATCTTAACCACTAGACCAGCACA
1 CATCTTAACCACTAGACCAGCACA
8086732 CATCTTAACCACTAGACCAGCA
1 CATCTTAACCACTAGACCAGCA
8086754 GACCCATTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.37, C:0.37, G:0.09, T:0.17
Consensus pattern (24 bp):
CATCTTAACCACTAGACCAGCACA
Found at i:8087826 original size:18 final size:18
Alignment explanation
Indices: 8087803--8087838 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
8087793 GGGAATAACC
8087803 CCCACA-TTTGCTTCTATT
1 CCCACATTTTGC-TCTATT
8087821 CCCACATTTTGCTCTATT
1 CCCACATTTTGCTCTATT
8087839 TTCACTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.17, C:0.33, G:0.06, T:0.44
Consensus pattern (18 bp):
CCCACATTTTGCTCTATT
Found at i:8089737 original size:6 final size:6
Alignment explanation
Indices: 8089728--8089760 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
8089718 TTTATTCTGT
*
8089728 TTTTTA TTTTTA TTTCT- TTTTTA TTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
8089761 ATTATATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:8089749 original size:17 final size:17
Alignment explanation
Indices: 8089727--8089759 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8089717 ATTTATTCTG
8089727 TTTTTTATTTTTATTTC
1 TTTTTTATTTTTATTTC
8089744 TTTTTTATTTTTATTT
1 TTTTTTATTTTTATTT
8089760 TATTATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTTTATTTTTATTTC
Found at i:8089770 original size:10 final size:10
Alignment explanation
Indices: 8089694--8089772 Score: 54
Period size: 11 Copynumber: 7.6 Consensus size: 10
8089684 AAAAAATTTC
8089694 TTTTATTATA
1 TTTTATTATA
8089704 TATTTATATATA
1 T-TTTAT-TATA
* *
8089716 TATTTATTCTG
1 T-TTTATTATA
8089727 TTTT-TTAT-
1 TTTTATTATA
* *
8089735 TTTTATTTCTT
1 TTTTA-TTATA
*
8089746 TTTTATTTTTA
1 TTTTA-TTATA
8089757 TTTTATTATA
1 TTTTATTATA
8089767 TTTTAT
1 TTTTAT
8089773 ATGTAAAATA
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
8 4 0.07
9 3 0.05
10 17 0.30
11 22 0.39
12 11 0.19
ACGTcount: A:0.23, C:0.03, G:0.01, T:0.73
Consensus pattern (10 bp):
TTTTATTATA
Found at i:8093679 original size:15 final size:15
Alignment explanation
Indices: 8093643--8093692 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
8093633 CGATGTCCTT
8093643 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
8093657 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
*
8093673 TTT-CATCGCAT-CA
1 TTTGCATCTCATGCA
8093686 TTTGCAT
1 TTTGCAT
8093693 TCAAAGTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:8102738 original size:179 final size:178
Alignment explanation
Indices: 8102430--8102773 Score: 461
Period size: 179 Copynumber: 1.9 Consensus size: 178
8102420 ACACATAGAA
8102430 ATCTAACTTCAGATGTTTATACGAACAGATCCAGAGATGATTATGGCATTCTTGTGTTTACTAAG
1 ATCTAACTTCAGATGTTTATACGAACAGATCCAGAGATGATTATGGCATTCTTGTGTTTACTAAG
*
8102495 GAACAACATCGAATACATCGCAGATTTTGACTTTCGGATGTTCATCACACAAGAATCCAAGATAA
66 GAACAACATCGAAGACATCGCAGATTTTGACTTTCGGATGTTCATCACACAAGAATCCAAGATAA
* * *
8102560 CATATCTGGCCTCTTATCCCATTTC-AACGGAGAGCAGATACATAAGCAG
131 CAGATCAGGCATC-TAT-CCATTTCGAACGGAGAGCAGATACATAAGCAG
*
8102609 ATCTACAC-TCAGATGTTTATACTGAAGCAGATCCA-AGATGATT-TGGCATTTTTGTGTTTTAC
1 ATCTA-ACTTCAGATGTTTATAC-GAA-CAGATCCAGAGATGATTATGGCATTCTTGTG-TTTAC
* * * *
8102671 -AAGGCACAA-ATCGAAGACATAGGCAGA-TTTGACTTTCGGAGTGTTC-TCACGCGAAGCATCC
62 TAAGGAACAACATCGAAGACAT-CGCAGATTTTGACTTTCGGA-TGTTCATCACAC-AAGAATCC
*
8102732 AAGATAACAGATCAGGCATCTCTCCATTTCGAACGGAGAGCA
124 AAGATAACAGATCAGGCATCTATCCATTTCGAACGGAGAGCA
8102774 NNNNNNNNNN
Statistics
Matches: 147, Mismatches: 10, Indels: 17
0.84 0.06 0.10
Matches are distributed among these distances:
177 7 0.05
178 41 0.28
179 73 0.50
180 18 0.12
181 8 0.05
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (178 bp):
ATCTAACTTCAGATGTTTATACGAACAGATCCAGAGATGATTATGGCATTCTTGTGTTTACTAAG
GAACAACATCGAAGACATCGCAGATTTTGACTTTCGGATGTTCATCACACAAGAATCCAAGATAA
CAGATCAGGCATCTATCCATTTCGAACGGAGAGCAGATACATAAGCAG
Done.