Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 263 of 325
Found at i:85881967 original size:9 final size:9
Alignment explanation
Indices: 85881955--85881988 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
85881945 CAAATTATCT
85881955 GAATTAATC
1 GAATTAATC
85881964 GAATTAATC
1 GAATTAATC
85881973 GAATTAA-C
1 GAATTAATC
85881981 TGAATTAA
1 -GAATTAA
85881989 AACTACATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 1 0.04
9 23 0.96
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.32
Consensus pattern (9 bp):
GAATTAATC
Found at i:85882769 original size:17 final size:18
Alignment explanation
Indices: 85882737--85882771 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
85882727 CCAAATGAAC
85882737 AAAAATGGATAGAAATGAT
1 AAAAATGGA-AGAAATGAT
85882756 AAAAATGG-AGAAATGA
1 AAAAATGGAAGAAATGA
85882772 GAAACACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
19 8 0.50
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.17
Consensus pattern (18 bp):
AAAAATGGAAGAAATGAT
Found at i:85883086 original size:14 final size:14
Alignment explanation
Indices: 85883069--85883095 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
85883059 TATAAAGTAC
85883069 TGGGTTAAAAGTCT
1 TGGGTTAAAAGTCT
85883083 TGGGTTAAAAGTC
1 TGGGTTAAAAGTC
85883096 GAGGAATTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.07, G:0.30, T:0.33
Consensus pattern (14 bp):
TGGGTTAAAAGTCT
Found at i:85887572 original size:49 final size:49
Alignment explanation
Indices: 85887515--85887618 Score: 181
Period size: 49 Copynumber: 2.1 Consensus size: 49
85887505 TCAATAAGAG
*
85887515 ATGATTTTGCTTCTATAGTTACTAACACGTCACACTTAATTATCTTTAC
1 ATGATTTTGCTTCTATAGTTACTAACACATCACACTTAATTATCTTTAC
*
85887564 ATGATTTTGCTTCTATAGTTACTAACACATCACATTTAATTATCTTTAC
1 ATGATTTTGCTTCTATAGTTACTAACACATCACACTTAATTATCTTTAC
*
85887613 ACGATT
1 ATGATT
85887619 ACCACAACTA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.30, C:0.19, G:0.08, T:0.43
Consensus pattern (49 bp):
ATGATTTTGCTTCTATAGTTACTAACACATCACACTTAATTATCTTTAC
Found at i:85906859 original size:25 final size:25
Alignment explanation
Indices: 85906771--85906860 Score: 87
Period size: 25 Copynumber: 3.6 Consensus size: 25
85906761 TCATATACAT
*
85906771 GTATGCTCAT-ACGAGTTATGAATCG
1 GTATGCTC-TCACGAGCTATGAATCG
*
85906796 GTATGCTCTCACAAGCTATGAATCG
1 GTATGCTCTCACGAGCTATGAATCG
* * *
85906821 ATAAGCTCAT-ACGAGCTGA-GAATTG
1 GTATGCTC-TCACGAGCT-ATGAATCG
85906846 GTATGCTCTCACGAG
1 GTATGCTCTCACGAG
85906861 TCGTAAATTG
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
24 2 0.04
25 49 0.92
26 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTATGAATCG
Found at i:85913473 original size:16 final size:16
Alignment explanation
Indices: 85913454--85913488 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
85913444 TATGGACTGA
85913454 ATTGAATAATAAAAGT
1 ATTGAATAATAAAAGT
85913470 ATTGAATAATAAAAGT
1 ATTGAATAATAAAAGT
85913486 ATT
1 ATT
85913489 AAATGGATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.34
Consensus pattern (16 bp):
ATTGAATAATAAAAGT
Found at i:85916602 original size:35 final size:35
Alignment explanation
Indices: 85916526--85916656 Score: 108
Period size: 35 Copynumber: 3.7 Consensus size: 35
85916516 ATAGGTAAGT
* * * *
85916526 ATATGTGAGCTTATATTGAACTTGAATATTCGATT
1 ATATGTGAGTTTATATTGAATTTGAATATTCGGTC
* **
85916561 ACATGTGAGTTTATATTGAATTTGTGTATTCGGTC
1 ATATGTGAGTTTATATTGAATTTGAATATTCGGTC
* *
85916596 ATATGTGAAG-TTA-ACTTGAATGTGCATATTCGG-C
1 ATATGTG-AGTTTATA-TTGAATTTGAATATTCGGTC
*
85916630 TATATGTGA-TGTTCTATTGAATTTGAA
1 -ATATGTGAGT-TTATATTGAATTTGAA
85916657 CTATAGGTTA
Statistics
Matches: 76, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
34 3 0.04
35 70 0.92
36 3 0.04
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (35 bp):
ATATGTGAGTTTATATTGAATTTGAATATTCGGTC
Found at i:85923753 original size:42 final size:42
Alignment explanation
Indices: 85923664--85923768 Score: 115
Period size: 42 Copynumber: 2.5 Consensus size: 42
85923654 AGGTTATTAG
* * **
85923664 GATTTCGTATAAGACCATATCTGAGATATGGCCTCGGTATGT
1 GATTTCGTATAAGACCATATCTGAGACATGGCATCAATATGT
*
85923706 GATTTCGTATAAGACCATGTC-GAGGACATGGCATCAATATGAT
1 GATTTCGTATAAGACCATATCTGA-GACATGGCATCAATATG-T
* *
85923749 -ATTTCATGTAAGACCATATC
1 GATTTCGTATAAGACCATATC
85923769 GGGAATATGG
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 2 0.04
42 50 0.94
43 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (42 bp):
GATTTCGTATAAGACCATATCTGAGACATGGCATCAATATGT
Found at i:85926292 original size:20 final size:20
Alignment explanation
Indices: 85926252--85926292 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
85926242 AAACAAAAAT
*
85926252 ATTAAAAATATAAAAATTAA
1 ATTAAAAATATAAAAAATAA
85926272 ATTAAAAATA-AATAAAATAA
1 ATTAAAAATATAA-AAAATAA
85926292 A
1 A
85926293 AAATAGCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (20 bp):
ATTAAAAATATAAAAAATAA
Found at i:85928234 original size:19 final size:21
Alignment explanation
Indices: 85928203--85928242 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
85928193 ATTATTTCTC
85928203 ATTTATCTAAAATAA-AATTT
1 ATTTATCTAAAATAATAATTT
85928223 ATTTAT-TAAAATAATAATTT
1 ATTTATCTAAAATAATAATTT
85928243 TATAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTTATCTAAAATAATAATTT
Found at i:85936572 original size:16 final size:17
Alignment explanation
Indices: 85936546--85936577 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
85936536 CTTTCATTTT
85936546 TTTTCACACTTCAATCC
1 TTTTCACACTTCAATCC
85936563 TTTT-ACACTTCAATC
1 TTTTCACACTTCAATC
85936578 ATTTCAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.25, C:0.31, G:0.00, T:0.44
Consensus pattern (17 bp):
TTTTCACACTTCAATCC
Found at i:85940649 original size:7 final size:7
Alignment explanation
Indices: 85940637--85940662 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
85940627 TAGTCGATTC
85940637 GTATTTA
1 GTATTTA
85940644 GTATTTA
1 GTATTTA
85940651 GTATTTA
1 GTATTTA
85940658 GTATT
1 GTATT
85940663 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:85941199 original size:30 final size:30
Alignment explanation
Indices: 85941159--85941256 Score: 115
Period size: 30 Copynumber: 3.3 Consensus size: 30
85941149 GATGACGACG
*
85941159 CGGGCTCATCAACAGTACCCACACAATCAC
1 CGGGCCCATCAACAGTACCCACACAATCAC
** *
85941189 CGGGCCCATCAACAGCGCCCATACAATCAC
1 CGGGCCCATCAACAGTACCCACACAATCAC
*** * *
85941219 CAAACCCATCAACAGTTCCCACACAGTCAC
1 CGGGCCCATCAACAGTACCCACACAATCAC
85941249 CGGGCCCA
1 CGGGCCCA
85941257 ACACTTCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.32, C:0.43, G:0.14, T:0.11
Consensus pattern (30 bp):
CGGGCCCATCAACAGTACCCACACAATCAC
Found at i:85941332 original size:18 final size:18
Alignment explanation
Indices: 85941309--85941352 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
85941299 ATGCTAGTTG
* *
85941309 TGTATCCTAGCCCTTTTA
1 TGTATCCTAACCCTTATA
85941327 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
*
85941345 TGTTTCCT
1 TGTATCCT
85941353 TGTCCCAGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.18, C:0.27, G:0.09, T:0.45
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:85944293 original size:24 final size:24
Alignment explanation
Indices: 85944265--85944314 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
85944255 CCACTAGAAG
*
85944265 TTGATGTCATTTTCC-ATTACGTAT
1 TTGATGTCA-TTTCCTAGTACGTAT
85944289 TTGATGTCATTTCCTAGTACGTAT
1 TTGATGTCATTTCCTAGTACGTAT
85944313 TT
1 TT
85944315 CAGCATCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (24 bp):
TTGATGTCATTTCCTAGTACGTAT
Found at i:85945163 original size:126 final size:126
Alignment explanation
Indices: 85944938--85945209 Score: 418
Period size: 126 Copynumber: 2.2 Consensus size: 126
85944928 AATAGGAACT
* *
85944938 ACTGTAGTAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTACATTTGCTGACAGTGCATCCTACT
1 ACTGTAGAAAAAGAGCGTCCACATAGGAGCTTTTTTCAGTACATTTGCTGACAGTGCATCCTACT
* *
85945003 TGAAGCAATTTTGAAACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTTAGAAACG
66 TGAAACAATTTTGAAACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGAAACG
* * * * *
85945064 ACTGTAGAAAAAGAGTGTCCACATGGGAGCTTTTTTTAGTACGTTTGCTGACAGTGCATCCTGCT
1 ACTGTAGAAAAAGAGCGTCCACATAGGAGCTTTTTTCAGTACATTTGCTGACAGTGCATCCTACT
** * *
85945129 TGAAACGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGAAACT
66 TGAAACAATTTTGAAACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGAAACG
*
85945190 ACTATAGAAAAAGAGCGTCC
1 ACTGTAGAAAAAGAGCGTCC
85945210 TGAAAAACTA
Statistics
Matches: 131, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
126 131 1.00
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (126 bp):
ACTGTAGAAAAAGAGCGTCCACATAGGAGCTTTTTTCAGTACATTTGCTGACAGTGCATCCTACT
TGAAACAATTTTGAAACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGAAACG
Found at i:85945269 original size:154 final size:155
Alignment explanation
Indices: 85945059--85945360 Score: 498
Period size: 154 Copynumber: 2.0 Consensus size: 155
85945049 ATTTTTTTAG
* * *
85945059 AAACGACTGTAGAAAAAGAGTGTCCACATGGGAGCTTTTTTTAGTACGTTTGCTGACAGTGCATC
1 AAACGACTATAGAAAAAGAGCGTCCACATGGGAGCTTTTTTCAGTACGTTTGCTGACAGTGCATC
*
85945124 CTGCTTGAAACGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGAAAC
66 CTACTTGAAACGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGAAAC
85945189 TACTATAGAAAAAGAGCGTCCTGAA
131 TACTATAGAAAAAGAGCGTCCTGAA
* * * *
85945214 AAACTACTATAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTCAGTACTTTTTCTGACAGTGCATC
1 AAACGACTATAGAAAAAGAGCGTCCACATGGGAGCTTTTTTCAGTACGTTTGCTGACAGTGCATC
* *
85945278 CTACTTGAAGCGTTTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTTCAGAAAC
66 CTACTTGAAACGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGAAAC
*
85945343 TACTGTAGAAAAAGAGCG
131 TACTATAGAAAAAGAGCG
85945361 CCCATGTAGG
Statistics
Matches: 136, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
154 105 0.77
155 31 0.23
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (155 bp):
AAACGACTATAGAAAAAGAGCGTCCACATGGGAGCTTTTTTCAGTACGTTTGCTGACAGTGCATC
CTACTTGAAACGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAGAAAC
TACTATAGAAAAAGAGCGTCCTGAA
Found at i:85945378 original size:125 final size:126
Alignment explanation
Indices: 85945214--85945634 Score: 609
Period size: 125 Copynumber: 3.4 Consensus size: 126
85945204 GCGTCCTGAA
* * *
85945214 AAACTACTATAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTCAGTACTTTTTCTGACAGTGCATC
1 AAACTACTGTAGAAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATC
*
85945278 CTACTTGAAGCGTTTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTTCAG
66 CTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
* * *
85945339 AAACTACTGTAGAAAAAGAGCGCCCATGTAGGAGTTTTTTTCAGTACTTTTGCTGACAGTGC-TC
1 AAACTACTGTAGAAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATC
* *
85945403 CTGCTTAAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA-TTTTTCAG
66 CTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
**
85945463 AAACTACTGTAGAAAAA-AAAGTCCACGCTA-GAGCTTTTTTCAGTACTTTTGCTGACAGTGCAT
1 AAACTACTGTAGAAAAAGAGCGTCCACG-TAGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCAT
** * * * *
85945526 CCTACTTGAAGCAATTTTGAAACTATTTGTTCAAAAACATCTTCTCAAAAATATTTTTTTAG
65 CCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
* * * *
85945588 AAACGACTGTAGAAAAAGAGTGTCCACATAGGAGCTTTTTTAAGTAC
1 AAACTACTGTAGAAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTAC
85945635 GTAAGCGTTT
Statistics
Matches: 263, Mismatches: 27, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
123 36 0.14
124 74 0.28
125 106 0.40
126 47 0.18
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (126 bp):
AAACTACTGTAGAAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATC
CTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
Found at i:85945730 original size:102 final size:103
Alignment explanation
Indices: 85945540--85945736 Score: 279
Period size: 102 Copynumber: 1.9 Consensus size: 103
85945530 CTTGAAGCAA
* *
85945540 TTTTGAAACTATTTGTTCAAAAACATCTTCTCAAAAATATTTTTTTAGAAACGACTGTAGAAAAA
1 TTTTGAAACTATTTGTTCAAAAACATCTTCTCAAAAATATTTTTTCAAAAACGACTGTAGAAAAA
**
85945605 GAGTGTCCACATAGGAGCTTTTTTAAGTACGTAAGCGT
66 GAGCATCCACATAGGAGCTTTTTTAAGTACGTAAGCGT
* * * **
85945643 TTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA-TTTTTCAAAAATTACTGTAGAAAAA
1 TTTTGAAACTATTTGTTCAAAAACATCTTCTCAAAAATATTTTTTCAAAAACGACTGTAGAAAAA
* * *
85945707 GAGCATCCACGTGGGAGCTTTTTTTAGTAC
66 GAGCATCCACATAGGAGCTTTTTTAAGTAC
85945737 TTTTGTTGAT
Statistics
Matches: 82, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
102 46 0.56
103 36 0.44
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Consensus pattern (103 bp):
TTTTGAAACTATTTGTTCAAAAACATCTTCTCAAAAATATTTTTTCAAAAACGACTGTAGAAAAA
GAGCATCCACATAGGAGCTTTTTTAAGTACGTAAGCGT
Found at i:85945730 original size:103 final size:102
Alignment explanation
Indices: 85945540--85945736 Score: 270
Period size: 103 Copynumber: 1.9 Consensus size: 102
85945530 CTTGAAGCAA
* *
85945540 TTTTGAAACTATTTGTTCAAAAACATCTTCTCAAAAATATTTTTTTAGAAACGACTGTAGAAAAA
1 TTTTGAAACTATTTGTTCAAAAACATCTTCTCAAAAATATTTTTTCAAAAACGACTGTAGAAAAA
**
85945605 GAGTGTCCACATAGGAGCTTTTTTAAGTACGTAAGCGT
66 GAGCATCCACATAGGAGCTTTTTT-AGTACGTAAGCGT
* * * **
85945643 TTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA-TTTTTCAAAAATTACTGTAGAAAAA
1 TTTTGAAACTATTTGTTCAAAAACATCTTCTCAAAAATATTTTTTCAAAAACGACTGTAGAAAAA
* *
85945707 GAGCATCCACGTGGGAGCTTTTTTTAGTAC
66 GAGCATCCACATAGGAGC-TTTTTTAGTAC
85945737 TTTTGTTGAT
Statistics
Matches: 82, Mismatches: 11, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
102 40 0.49
103 42 0.51
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Consensus pattern (102 bp):
TTTTGAAACTATTTGTTCAAAAACATCTTCTCAAAAATATTTTTTCAAAAACGACTGTAGAAAAA
GAGCATCCACATAGGAGCTTTTTTAGTACGTAAGCGT
Found at i:85945909 original size:126 final size:127
Alignment explanation
Indices: 85945637--85945938 Score: 457
Period size: 126 Copynumber: 2.4 Consensus size: 127
85945627 TTAAGTACGT
* *
85945637 AAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA--TTTTTCAAAAATTACTGT
1 AAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTTCAAAAACTACTAT
* * * *
85945700 AGAAAAAGAGCATCCACGTGGGAGCTTTTTTTAGTACTTTTGTTGATAGTACATCCTGCTTA
66 AGAAAAAGAGCATCCAAGTGGAAGCTTTTTTTAGTACTTTTGCTGACAGTACATCCTGCTTA
* *
85945762 AAGCGTTTTTGACACTATTTGTTTAGAAATATCTTCTCAAAATTATTTTTTTCAAAAACTACTAT
1 AAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTTCAAAAACTACTAT
* * * *
85945827 AGAAAAA-AGCGTCCAAGTGGAAGCTTTTTTTAGTACTTTTGCTGACAGTGCATCTTGCTTG
66 AGAAAAAGAGCATCCAAGTGGAAGCTTTTTTTAGTACTTTTGCTGACAGTACATCCTGCTTA
* *
85945888 AAGCGGTTTTGACACTATTTGTTCAGAAACATCTTTTCAAAATTATTTTTT
1 AAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTT
85945939 CAGATACATC
Statistics
Matches: 159, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
125 43 0.27
126 93 0.58
127 23 0.14
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (127 bp):
AAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTTCAAAAACTACTAT
AGAAAAAGAGCATCCAAGTGGAAGCTTTTTTTAGTACTTTTGCTGACAGTACATCCTGCTTA
Found at i:85945961 original size:28 final size:28
Alignment explanation
Indices: 85945903--85945973 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
85945893 GTTTTGACAC
* * *
85945903 TATTTGTTCAGAAACATCTTTTCAAAAT
1 TATTTTTTCAGATACATCTTCTCAAAAT
* *
85945931 TATTTTTTCAGATACATCTTCTCTAATT
1 TATTTTTTCAGATACATCTTCTCAAAAT
*
85945959 TATTTTTTTAGATAC
1 TATTTTTTCAGATAC
85945974 TGTAGAAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.30, C:0.14, G:0.06, T:0.51
Consensus pattern (28 bp):
TATTTTTTCAGATACATCTTCTCAAAAT
Found at i:85947212 original size:12 final size:13
Alignment explanation
Indices: 85947187--85947211 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85947177 AATCATAAAA
85947187 GGTAATTTTTTTT
1 GGTAATTTTTTTT
85947200 GGTAATTTTTTT
1 GGTAATTTTTTT
85947212 GTTATAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (13 bp):
GGTAATTTTTTTT
Found at i:85947342 original size:17 final size:17
Alignment explanation
Indices: 85947320--85947356 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
85947310 GCTATTGAGG
85947320 TATGTTTGTATTTATTT
1 TATGTTTGTATTTATTT
85947337 TATGTTTGTATTTATTT
1 TATGTTTGTATTTATTT
85947354 TAT
1 TAT
85947357 ATTTTCATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.11, T:0.70
Consensus pattern (17 bp):
TATGTTTGTATTTATTT
Found at i:85951555 original size:16 final size:17
Alignment explanation
Indices: 85951519--85951557 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
85951509 TTTTAAAAGG
85951519 AAAACAAATGAATCTTA
1 AAAACAAATGAATCTTA
*
85951536 AAAACAATTGAATCTTA
1 AAAACAAATGAATCTTA
85951553 AAAAC
1 AAAAC
85951558 TTAATGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.59, C:0.13, G:0.05, T:0.23
Consensus pattern (17 bp):
AAAACAAATGAATCTTA
Found at i:85966181 original size:15 final size:15
Alignment explanation
Indices: 85966163--85966191 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
85966153 ATGTTATTAA
85966163 ATTAAATTATATTTT
1 ATTAAATTATATTTT
85966178 ATTAAATTATATTT
1 ATTAAATTATATTT
85966192 AATAATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTAAATTATATTTT
Found at i:85966200 original size:58 final size:58
Alignment explanation
Indices: 85966133--85966269 Score: 152
Period size: 58 Copynumber: 2.4 Consensus size: 58
85966123 TTAATTCATA
* * * *
85966133 TAATAATAATTATATTAAGAATGTTATTAAATTAA--ATTATATTTTATTAAATTATATT
1 TAATAATAATTATATTAA-AATATCATTAAATTAATTATTAT-TTTTAATAAAATATATT
* * * *
85966191 TAATAATAATTATGTTGAAATATCGTTAAATTATTTATTATTTTTAATAAAATATATT
1 TAATAATAATTATATTAAAATATCATTAAATTAATTATTATTTTTAATAAAATATATT
* *
85966249 TAACAATAATTTTATTAAAAT
1 TAATAATAATTATATTAAAAT
85966270 TTAATAACAA
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
57 12 0.18
58 48 0.74
59 5 0.08
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (58 bp):
TAATAATAATTATATTAAAATATCATTAAATTAATTATTATTTTTAATAAAATATATT
Found at i:85966267 original size:26 final size:25
Alignment explanation
Indices: 85966232--85966282 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
85966222 TATTTATTAT
*
85966232 TTTTAATAAAATATATTTAACAATAA
1 TTTTAATAAAATATA-ATAACAATAA
* *
85966258 TTTTATTAAAATTTAATAACAATAA
1 TTTTAATAAAATATAATAACAATAA
85966283 CAATAATCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (25 bp):
TTTTAATAAAATATAATAACAATAA
Found at i:85966415 original size:44 final size:46
Alignment explanation
Indices: 85966364--85966450 Score: 135
Period size: 44 Copynumber: 1.9 Consensus size: 46
85966354 TACAAAATTT
85966364 ATTCCATTCAACCAAACACA-AGAATT-CT-ATTACAGCTCTATCCC
1 ATTCCATTCAACCAAACA-ATAGAATTACTAATTACAGCTCTATCCC
*
85966408 ATTCCATTCAACCAAACAATTGAATTACTAATTACAGCTCTAT
1 ATTCCATTCAACCAAACAATAGAATTACTAATTACAGCTCTAT
85966451 TCAATTACAG
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
43 1 0.03
44 23 0.59
45 2 0.05
46 13 0.33
ACGTcount: A:0.38, C:0.28, G:0.05, T:0.30
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAATAGAATTACTAATTACAGCTCTATCCC
Found at i:85966458 original size:16 final size:16
Alignment explanation
Indices: 85966437--85966476 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
85966427 TTGAATTACT
*
85966437 AATTACAGCTCTATTC
1 AATTACAGATCTATTC
*
85966453 AATTACAGATTTATTC
1 AATTACAGATCTATTC
85966469 AATTACAG
1 AATTACAG
85966477 TGAACCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (16 bp):
AATTACAGATCTATTC
Found at i:85969124 original size:33 final size:33
Alignment explanation
Indices: 85969020--85969115 Score: 120
Period size: 33 Copynumber: 2.9 Consensus size: 33
85969010 CAGTCCAGTA
* *
85969020 CCATCGCAGTACAACACTCCTCCCGGCCCGTAT
1 CCATCGCAGTACAACACTCCTCCCAGCTCGTAT
* ** *
85969053 CCATCGCATTACTTCACTCCTCCCAGGTCGTAT
1 CCATCGCAGTACAACACTCCTCCCAGCTCGTAT
* *
85969086 CCATCGCAGTACAGCACTCCTCCTAGCTCG
1 CCATCGCAGTACAACACTCCTCCCAGCTCG
85969116 AGTTCATCGA
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.20, C:0.43, G:0.15, T:0.23
Consensus pattern (33 bp):
CCATCGCAGTACAACACTCCTCCCAGCTCGTAT
Found at i:85971191 original size:13 final size:13
Alignment explanation
Indices: 85971173--85971209 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
85971163 AGAAAATTAG
85971173 CAAATCATACATA
1 CAAATCATACATA
85971186 CAAATCATACATA
1 CAAATCATACATA
*
85971199 TAAATTCATAC
1 CAAA-TCATAC
85971210 CAAACTATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (13 bp):
CAAATCATACATA
Found at i:85973085 original size:13 final size:13
Alignment explanation
Indices: 85973067--85973092 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85973057 CATAACTAAC
85973067 TTAATAAATATTT
1 TTAATAAATATTT
85973080 TTAATAAATATTT
1 TTAATAAATATTT
85973093 ACGGACTCGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTAATAAATATTT
Found at i:85975194 original size:42 final size:42
Alignment explanation
Indices: 85975148--85975291 Score: 94
Period size: 42 Copynumber: 3.4 Consensus size: 42
85975138 ATGACATGCT
*
85975148 CGTGTCCTAGGCTGTGTGGGCATTCGATGTAAGGCACATGGC
1 CGTGTCCTAGGCTGTGTGGGCATTCGATGTAAGGCACATGAC
** * ** ** * ** * * *
85975190 CGTGTGGGTAGGCCGTGTGACTCACACGGTAAAATG-ACACGTC
1 CGTGT-CCTAGGCTGTGTG-GGCATTCGATGTAAGGCACATGAC
*
85975233 AGTGTCCTAGG-TCGTGTGGGCATTCGATGTAAGGCACATGAC
1 CGTGTCCTAGGCT-GTGTGGGCATTCGATGTAAGGCACATGAC
* *
85975275 CGTGTCCCAGCCTGTGT
1 CGTGTCCTAGGCTGTGT
85975292 TCCTACCCGT
Statistics
Matches: 67, Mismatches: 30, Indels: 10
0.63 0.28 0.09
Matches are distributed among these distances:
41 8 0.12
42 31 0.46
43 20 0.30
44 8 0.12
ACGTcount: A:0.19, C:0.23, G:0.33, T:0.25
Consensus pattern (42 bp):
CGTGTCCTAGGCTGTGTGGGCATTCGATGTAAGGCACATGAC
Found at i:85975250 original size:85 final size:85
Alignment explanation
Indices: 85975104--85975279 Score: 275
Period size: 85 Copynumber: 2.1 Consensus size: 85
85975094 GGTCACACGC
* * *
85975104 CCGTGTGGGTAAGTCGTGTGACTCACACGGTCAAATGACATGCTCGTGTCCTAGGCTGTGTGGGC
1 CCGTGTGGGTAAGCCGTGTGACTCACACGGTAAAATGACACGCTCGTGTCCTAGGCTGTGTGGGC
*
85975169 ATTCGATGTAAGGCACATGG
66 ATTCGATGTAAGGCACATGA
*
85975189 CCGTGTGGGTAGGCCGTGTGACTCACACGGTAAAATGACACG-TCAGTGTCCTAGG-TCGTGTGG
1 CCGTGTGGGTAAGCCGTGTGACTCACACGGTAAAATGACACGCTC-GTGTCCTAGGCT-GTGTGG
85975252 GCATTCGATGTAAGGCACATGA
64 GCATTCGATGTAAGGCACATGA
85975274 CCGTGT
1 CCGTGT
85975280 CCCAGCCTGT
Statistics
Matches: 84, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
84 3 0.04
85 81 0.96
ACGTcount: A:0.20, C:0.22, G:0.33, T:0.25
Consensus pattern (85 bp):
CCGTGTGGGTAAGCCGTGTGACTCACACGGTAAAATGACACGCTCGTGTCCTAGGCTGTGTGGGC
ATTCGATGTAAGGCACATGA
Found at i:85976513 original size:23 final size:24
Alignment explanation
Indices: 85976458--85976513 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
85976448 AGCCTTACTA
*
85976458 TGGGAAGTTCACAAAGAACCATAT
1 TGGGAAGCTCACAAAGAACCATAT
* * *
85976482 GGGGAAGCTCATAAAGAGCC-TAT
1 TGGGAAGCTCACAAAGAACCATAT
85976505 TGGGAAGCT
1 TGGGAAGCT
85976514 TATCCAGGCT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 11 0.41
24 16 0.59
ACGTcount: A:0.36, C:0.16, G:0.29, T:0.20
Consensus pattern (24 bp):
TGGGAAGCTCACAAAGAACCATAT
Found at i:85976585 original size:48 final size:47
Alignment explanation
Indices: 85976460--85976596 Score: 127
Period size: 48 Copynumber: 2.9 Consensus size: 47
85976450 CCTTACTATG
* * *
85976460 GGAAGTTCACAAAGAACCATATGGGGAAGCTCATAAAGAGCCTATTG
1 GGAAGTTTACAAAGAACCATATCGGGAAGCTCATAAAGAGCCTATTA
* * * * *
85976507 GGAAGCTTATC-CAG-GCTATATAACGAGAAGCTCAT-AAGAGCCATAATTA
1 GGAAGTTTA-CAAAGAACCATAT--CGGGAAGCTCATAAAGAGCC-T-ATTA
*
85976556 GGAAGTTTACAAAGAACCATATCGGGAAGCTCACAAAGAGC
1 GGAAGTTTACAAAGAACCATATCGGGAAGCTCATAAAGAGC
85976597 AATATAATGG
Statistics
Matches: 68, Mismatches: 14, Indels: 14
0.71 0.15 0.15
Matches are distributed among these distances:
46 5 0.07
47 16 0.24
48 23 0.34
49 19 0.28
50 5 0.07
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.19
Consensus pattern (47 bp):
GGAAGTTTACAAAGAACCATATCGGGAAGCTCATAAAGAGCCTATTA
Found at i:85979200 original size:4 final size:4
Alignment explanation
Indices: 85979191--85979226 Score: 54
Period size: 4 Copynumber: 8.5 Consensus size: 4
85979181 AAAAATACCT
85979191 TTTC TTTC TTTC TTTC TTCTC TTTTC TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TT-TC -TTTC TTTC TTTC TT
85979227 CTCCCTCTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 24 0.80
5 4 0.13
6 2 0.07
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:85979218 original size:18 final size:18
Alignment explanation
Indices: 85979195--85979229 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
85979185 ATACCTTTTC
85979195 TTTCTTTCTTTCTTCTCT
1 TTTCTTTCTTTCTTCTCT
85979213 TTTCTTTCTTTCTTCTC
1 TTTCTTTCTTTCTTCTC
85979230 CCTCTCTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTCTTTCTTTCTTCTCT
Found at i:85979234 original size:22 final size:22
Alignment explanation
Indices: 85979189--85979241 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
85979179 ATAAAAATAC
*
85979189 CTTTTCTTTCTTTCTTTCTTCT
1 CTTTTCTTTCTTTCTTTCTCCT
85979211 CTTTTCTTTCTTTC-TTCTCCCT
1 CTTTTCTTTCTTTCTTTCT-CCT
*
85979233 CTCTTCTTT
1 CTTTTCTTT
85979242 GTTATGTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 4 0.14
22 24 0.86
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (22 bp):
CTTTTCTTTCTTTCTTTCTCCT
Found at i:85979239 original size:18 final size:18
Alignment explanation
Indices: 85979197--85979241 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
85979187 ACCTTTTCTT
* *
85979197 TCTTTCTTTCTTCTCTTT
1 TCTTTCTTTCTTCTCCTC
85979215 TCTTTCTTTCTTCTCC-C
1 TCTTTCTTTCTTCTCCTC
85979232 TCTCTTCTTT
1 TCT-TTCTTT
85979242 GTTATGTTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 3 0.12
18 21 0.88
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (18 bp):
TCTTTCTTTCTTCTCCTC
Found at i:85987482 original size:30 final size:31
Alignment explanation
Indices: 85987430--85987488 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
85987420 GGTTCATTCA
85987430 GGGAAGAAGAAAAAAAAAGAAAA-AGAAATT
1 GGGAAGAAGAAAAAAAAAGAAAATAGAAATT
* * **
85987460 GGGAAGAAGTAAAATAGGGAAAATAGAAA
1 GGGAAGAAGAAAAAAAAAGAAAATAGAAA
85987489 GAAAGTAGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.08
Consensus pattern (31 bp):
GGGAAGAAGAAAAAAAAAGAAAATAGAAATT
Found at i:85989382 original size:17 final size:19
Alignment explanation
Indices: 85989362--85989401 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
85989352 ATAATAATAT
85989362 ATAG-ATAAAAAA-ACATA
1 ATAGTATAAAAAAGACATA
85989379 ATAGTATAAAAAATGACATA
1 ATAGTATAAAAAA-GACATA
85989399 ATA
1 ATA
85989402 TAAAATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.20
18 8 0.40
20 8 0.40
ACGTcount: A:0.65, C:0.05, G:0.07, T:0.23
Consensus pattern (19 bp):
ATAGTATAAAAAAGACATA
Found at i:85989422 original size:23 final size:23
Alignment explanation
Indices: 85989396--85989475 Score: 67
Period size: 23 Copynumber: 3.3 Consensus size: 23
85989386 AAAAAATGAC
85989396 ATAATATAAAATAATTATAATAT
1 ATAATATAAAATAATTATAATAT
85989419 ATAATATGAAAGTATATATGTAT-ATA-
1 ATAATAT-AAA--ATA-AT-TATAATAT
85989445 AT-ATATATAAATAATTAATAAATAT
1 ATAATATA-AAATAATT-AT-AATAT
85989470 ATAATA
1 ATAATA
85989476 CAAGTAAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 19
0.71 0.00 0.29
Matches are distributed among these distances:
21 1 0.02
22 4 0.09
23 10 0.22
24 7 0.15
25 8 0.17
26 8 0.17
27 5 0.11
28 3 0.07
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (23 bp):
ATAATATAAAATAATTATAATAT
Found at i:85989497 original size:11 final size:11
Alignment explanation
Indices: 85989396--85989498 Score: 52
Period size: 13 Copynumber: 8.6 Consensus size: 11
85989386 AAAAAATGAC
85989396 ATAATATAA-A
1 ATAATATAATA
85989406 ATAATTATAATA
1 ATAA-TATAATA
85989418 TATAATATGAA-A
1 -ATAATAT-AATA
*
85989430 GTATATATGTATATA
1 --ATA-ATATA-ATA
85989445 ATATATATAAATA
1 ATA-ATAT-AATA
85989458 ATTAATA-AATA
1 A-TAATATAATA
*
85989469 TATAATACAAGTA
1 -ATAATATAA-TA
85989482 A-AATATAATA
1 ATAATATAATA
85989492 ATAATAT
1 ATAATAT
85989499 GTAAATAAGA
Statistics
Matches: 76, Mismatches: 3, Indels: 27
0.72 0.03 0.25
Matches are distributed among these distances:
10 7 0.09
11 25 0.33
12 9 0.12
13 27 0.36
14 7 0.09
15 1 0.01
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.37
Consensus pattern (11 bp):
ATAATATAATA
Found at i:85989570 original size:22 final size:22
Alignment explanation
Indices: 85989539--85989592 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
85989529 GTGAAAAGTA
*
85989539 ATATATAATAAATA-ACAATAAT
1 ATATAAAATAAATATA-AATAAT
* *
85989561 ATATAAAATAATTATATATAAT
1 ATATAAAATAAATATAAATAAT
85989583 ATA-AAAATAA
1 ATATAAAATAA
85989593 GATTAAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.25
22 20 0.71
23 1 0.04
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
ATATAAAATAAATATAAATAAT
Found at i:85989576 original size:13 final size:12
Alignment explanation
Indices: 85989543--85989592 Score: 52
Period size: 11 Copynumber: 4.3 Consensus size: 12
85989533 AAAGTAATAT
*
85989543 ATAATAAATAACA
1 ATAATATATAA-A
85989556 ATAATATATAAA
1 ATAATATATAAA
*
85989568 ATAAT-TAT-AT
1 ATAATATATAAA
85989578 ATAATATA-AAA
1 ATAATATATAAA
85989589 ATAA
1 ATAA
85989593 GATTAAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
10 6 0.19
11 10 0.31
12 6 0.19
13 10 0.31
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (12 bp):
ATAATATATAAA
Found at i:85989578 original size:33 final size:32
Alignment explanation
Indices: 85989532--85989600 Score: 79
Period size: 33 Copynumber: 2.1 Consensus size: 32
85989522 ATGTTTTGTG
* *
85989532 AAAAGTAATATATAATAA-ATAACAATAATATAT
1 AAAAGTAATATAT-ATAATATAAAAATAAGAT-T
85989565 AAAA-TAATTATATATAATATAAAAATAAGATT
1 AAAAGTAA-TATATATAATATAAAAATAAGATT
85989597 AAAA
1 AAAA
85989601 ATAAAACAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
32 12 0.38
33 20 0.62
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (32 bp):
AAAAGTAATATATATAATATAAAAATAAGATT
Found at i:85993918 original size:46 final size:46
Alignment explanation
Indices: 85993851--85994025 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
85993841 TGTAACCCGC
*
85993851 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * *
85993897 CCATAAGTGAGCTTGGACTCAACTCAACGAGCTCGGATGACTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* ** *
85993947 -C-TCA-TGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
85993990 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
85994026 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.56
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:85993966 original size:93 final size:93
Alignment explanation
Indices: 85993859--85994028 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
85993849 GCCCATAAGC
** * * **
85993859 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAGCTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
85993924 CGAGCTCGGATGACTAGTTACATCTCAT
66 CAAGCTCGGATGACTAGTTACATCTCAT
85993952 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
85994017 CAAGCTCGGATG
66 CAAGCTCGGATG
85994029 CCCAAATATC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CAAGCTCGGATGACTAGTTACATCTCAT
Found at i:85996991 original size:31 final size:31
Alignment explanation
Indices: 85996956--85997019 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
85996946 AATTAGGTGA
**
85996956 TTGAACTT-AGCTTGTTGGTTTAAATTGGTAC
1 TTGAACTTGA-CTTGTTGGTCCAAATTGGTAC
*
85996987 TTGAACTTGACTTTTTGGTCCAAATTGGTAC
1 TTGAACTTGACTTGTTGGTCCAAATTGGTAC
85997018 TT
1 TT
85997020 ATGGTAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 28 0.97
32 1 0.03
ACGTcount: A:0.22, C:0.12, G:0.20, T:0.45
Consensus pattern (31 bp):
TTGAACTTGACTTGTTGGTCCAAATTGGTAC
Found at i:86017982 original size:18 final size:17
Alignment explanation
Indices: 86017928--86017979 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
86017918 AATATAATTT
* *
86017928 TATTTTTTAAAAATATTAT
1 TATTTTTT--AAATTTTAA
*
86017947 TATTTTATTATATTTTAA
1 TATTTT-TTAAATTTTAA
86017965 TATTTTTTAAATTTT
1 TATTTTTTAAATTTT
86017980 TAAAATTCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 8 0.29
18 12 0.43
19 6 0.21
20 2 0.07
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TATTTTTTAAATTTTAA
Found at i:86018217 original size:15 final size:14
Alignment explanation
Indices: 86018190--86018225 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 14
86018180 TGCAGCAGCA
86018190 AAGAGAGAAAAGAAG
1 AAGA-AGAAAAGAAG
86018205 AAGAAGAATAAGAAG
1 AAGAAGAA-AAGAAG
86018220 AAGAAG
1 AAGAAG
86018226 GAGGAGGAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.03
Consensus pattern (14 bp):
AAGAAGAAAAGAAG
Found at i:86019348 original size:5 final size:5
Alignment explanation
Indices: 86019338--86019369 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
86019328 TTGTGTGTTC
86019338 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
86019370 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:86019352 original size:9 final size:9
Alignment explanation
Indices: 86019338--86019368 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
86019328 TTGTGTGTTC
86019338 TTTATTTTA
1 TTTATTTTA
86019347 TTTATTTTA
1 TTTATTTTA
86019356 TTTTATTTTA
1 -TTTATTTTA
86019366 TTT
1 TTT
86019369 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:86023777 original size:5 final size:5
Alignment explanation
Indices: 86023767--86023798 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
86023757 TTGTGTGTTC
86023767 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
86023799 TCACAAATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:86023781 original size:9 final size:9
Alignment explanation
Indices: 86023767--86023797 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
86023757 TTGTGTGTTC
86023767 TTTATTTTA
1 TTTATTTTA
86023776 TTTATTTTA
1 TTTATTTTA
86023785 TTTTATTTTA
1 -TTTATTTTA
86023795 TTT
1 TTT
86023798 TTCACAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:86024123 original size:11 final size:11
Alignment explanation
Indices: 86024088--86024115 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
86024078 GAGAGTAAGA
86024088 AATTTTAATGT
1 AATTTTAATGT
86024099 AATTTTAATGT
1 AATTTTAATGT
86024110 AATTTT
1 AATTTT
86024116 GATATAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (11 bp):
AATTTTAATGT
Found at i:86024845 original size:24 final size:23
Alignment explanation
Indices: 86024807--86024864 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 23
86024797 ATTTAAAAAT
*
86024807 TATTAAAATATAATAAAATAATAA
1 TATTAAAA-AAAATAAAATAATAA
* *
86024831 TATTTAAAAAAAATAAAATTATAT
1 TA-TTAAAAAAAATAAAATAATAA
86024855 TATTAAAAAA
1 TATTAAAAAA
86024865 TGAGTCGCGC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.27
24 16 0.53
25 6 0.20
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (23 bp):
TATTAAAAAAAATAAAATAATAA
Found at i:86025873 original size:17 final size:18
Alignment explanation
Indices: 86025848--86025882 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
86025838 ATATAATAAA
*
86025848 AAATTATAATT-TAAAAT
1 AAATAATAATTATAAAAT
86025865 AAATAATAATTATAAAAT
1 AAATAATAATTATAAAAT
86025883 TAGAAACAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
AAATAATAATTATAAAAT
Found at i:86031511 original size:126 final size:126
Alignment explanation
Indices: 86031352--86031590 Score: 408
Period size: 126 Copynumber: 1.9 Consensus size: 126
86031342 ATTTAAGCCT
86031352 TAAGAGAATATTCAAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGAAT
1 TAAGAGAATATTCAAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGAAT
* *
86031417 CTTCGAATTCTTTAAATACTGAAAATTGCCTTTATTTTGAAAATTTTTTAGAGTGAACTGG
66 CTTCGAATTCTTTAAATACCGAAAATTGCCTTTATTTTGAAAAATTTTTAGAGTGAACTGG
* * *
86031478 TAAGAGGATATTCGAATATTCAAGAA-AAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGAT
1 TAAGAGAATATTCAAATATTCAA-AACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGAA
*
86031542 TCTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTT
65 TCTTCGAATTCTTTAAATACCGAAAATTGCCTTTATTTTGAAAAATTTT
86031591 GAGAAAAAAT
Statistics
Matches: 106, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
126 104 0.98
127 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (126 bp):
TAAGAGAATATTCAAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGAAT
CTTCGAATTCTTTAAATACCGAAAATTGCCTTTATTTTGAAAAATTTTTAGAGTGAACTGG
Found at i:86031729 original size:13 final size:12
Alignment explanation
Indices: 86031697--86031746 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
86031687 AACCATGTAT
86031697 AAATAA-TAA-A
1 AAATAATTAATA
86031707 AAATAA-TAATA
1 AAATAATTAATA
*
86031718 ATAGTAATTAATA
1 A-AATAATTAATA
86031731 GAAATAATTAATA
1 -AAATAATTAATA
86031744 AAA
1 AAA
86031747 CAACAGTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 9 0.26
11 2 0.06
12 7 0.21
13 15 0.44
14 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (12 bp):
AAATAATTAATA
Found at i:86032080 original size:14 final size:14
Alignment explanation
Indices: 86032061--86032091 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
86032051 ATATATTTAC
*
86032061 ATAATAAATATATA
1 ATAATAAATAAATA
86032075 ATAATAAATAAATA
1 ATAATAAATAAATA
86032089 ATA
1 ATA
86032092 TAATAATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
ATAATAAATAAATA
Found at i:86032092 original size:19 final size:18
Alignment explanation
Indices: 86032063--86032099 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
86032053 ATATTTACAT
86032063 AATAAATATATAATAATA
1 AATAAATATATAATAATA
86032081 AATAAATAATATAATAATA
1 AATAAAT-ATATAATAATA
86032100 TGAAACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATAAATATATAATAATA
Found at i:86032139 original size:63 final size:64
Alignment explanation
Indices: 86032072--86032214 Score: 161
Period size: 63 Copynumber: 2.2 Consensus size: 64
86032062 TAATAAATAT
* * *
86032072 ATAATAATAAATAAATAATATAATAAT-ATGAAACAT-AA-CTCAAATTAATTAAATTAATAG-A
1 ATAATAA-AAATAAA-AATATAAAAATAATGAAA-ATAAAGATCAAATTAATTAAATTAACAGTA
86032133 AA
63 AA
* *
86032135 ATAATAAAAA-AACAAATATAAAAATAATGAGAATAAAGATCAAATTAATTAATTTAACAGTAAA
1 ATAATAAAAATAA-AAATATAAAAATAATGAAAATAAAGATCAAATTAATTAAATTAACAGTAAA
*
86032199 ATAACAAAAATAAAAA
1 ATAATAAAAATAAAAA
86032215 AGGGGTTAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
61 14 0.21
62 11 0.16
63 26 0.38
64 15 0.22
65 2 0.03
ACGTcount: A:0.65, C:0.05, G:0.04, T:0.26
Consensus pattern (64 bp):
ATAATAAAAATAAAAATATAAAAATAATGAAAATAAAGATCAAATTAATTAAATTAACAGTAAA
Found at i:86032508 original size:18 final size:18
Alignment explanation
Indices: 86032485--86032520 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
86032475 ATAACAAGTA
* *
86032485 GGGTGATGGAGTTAGTGG
1 GGGTGATGAAGGTAGTGG
86032503 GGGTGATGAAGGTAGTGG
1 GGGTGATGAAGGTAGTGG
86032521 ATGGTTTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.56, T:0.25
Consensus pattern (18 bp):
GGGTGATGAAGGTAGTGG
Found at i:86032553 original size:37 final size:37
Alignment explanation
Indices: 86032499--86032573 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
86032489 GATGGAGTTA
86032499 GTGGGGGTGATGAAGGTAGTGGATGGTTTAGTAGGGT
1 GTGGGGGTGATGAAGGTAGTGGATGGTTTAGTAGGGT
*
86032536 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
1 GTGGGGGTGATGAAGGTAGTGGATGGTTTAGTAGGGT
86032573 G
1 G
86032574 ATGGAGTTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.17, C:0.00, G:0.53, T:0.29
Consensus pattern (37 bp):
GTGGGGGTGATGAAGGTAGTGGATGGTTTAGTAGGGT
Found at i:86032573 original size:29 final size:29
Alignment explanation
Indices: 86032540--86032602 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
86032530 TAGGGTGTGG
*
86032540 GGGTGATGGAGGTAGTGGAT-GGTTTAGTA
1 GGGTGATGGAGGTAGAGG-TCGGTTTAGTA
* *
86032569 GGGTGATGGAGTTAGAGGTCGGTTTAGTG
1 GGGTGATGGAGGTAGAGGTCGGTTTAGTA
86032598 GGGTG
1 GGGTG
86032603 TTTAATTTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 1 0.03
29 29 0.97
ACGTcount: A:0.17, C:0.02, G:0.51, T:0.30
Consensus pattern (29 bp):
GGGTGATGGAGGTAGAGGTCGGTTTAGTA
Found at i:86033199 original size:87 final size:85
Alignment explanation
Indices: 86032840--86033250 Score: 522
Period size: 85 Copynumber: 4.8 Consensus size: 85
86032830 AACGAAAATA
* *
86032840 AGATCTGT-AATTTTAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCAAGTCTTTGACCTACTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCGAGTCTTTGACCTGCTC
* *
86032904 CACCACTGCTCGGAGAGCCA
66 CACCACTGCTCGGCGAGCCC
* * *
86032924 AGATCTGTAAATTTTAGCATGTTACCCTACTGCTTAGGGGGCTAAGGCGAGTCTTTGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCGAGTCTTTGACCTGCTC
86032989 CACCACTGCTCGGCGAGCCC
66 CACCACTGCTCGGCGAGCCC
* * * * * *
86033009 A-AGTCTGTAAACTTTAGCCTGTTACCCTACTGCTTACGGGGTTAAAGCGAGTCTTCGACCTACT
1 AGA-TCTGTAAATTTTAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCGAGTCTTTGACCTGCT
* * * *
86033073 CCGCCATTGCTCGGTGAGTCC
65 CCACCACTGCTCGGCGAGCCC
* *
86033094 AGATCTGTAAATTTTAGCCTGTTACCCTACTACTTAAGGGGTTAAGGCGTCTA-TCTTTGATCTG
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCG---AGTCTTTGACCTG
**
86033158 CTCTGCCACTGCTCGGCGAGCCC
63 CTCCACCACTGCTCGGCGAGCCC
* * * *
86033181 AGATCTATAAATTTTAGCCTGTTACCCTACTACTTAGGGGGTGAAGGCGTGTATCTTTGATCTGC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCGAG--TCTTTGACCTGC
86033246 TCCAC
64 TCCAC
86033251 TATTACTTAG
Statistics
Matches: 283, Mismatches: 35, Indels: 15
0.85 0.11 0.05
Matches are distributed among these distances:
84 9 0.03
85 184 0.65
86 1 0.00
87 88 0.31
88 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.30
Consensus pattern (85 bp):
AGATCTGTAAATTTTAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCGAGTCTTTGACCTGCTC
CACCACTGCTCGGCGAGCCC
Found at i:86033272 original size:87 final size:85
Alignment explanation
Indices: 86032839--86033400 Score: 522
Period size: 87 Copynumber: 6.6 Consensus size: 85
86032829 CAACGAAAAT
* * *
86032839 AAGATCTGT-AATTTTAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCAAGTCTTTGACCTACT
1 AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGCT
* *
86032903 CCACCACTGCTCGGAGAGCC
66 CCACCACTGCTCGGCGAGAC
* *
86032923 AAGATCTGTAAATTTTAGCATGTTACCCTACTGCTTAGGGGGCTAAGGCGAGTCTTTGACCTGCT
1 AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGCT
*
86032988 CCACCACTGCTCGGCGAGCCC
66 CCACCACTGCTCGGCGAG-AC
* * * * *
86033009 AAG-TCTGTAAACTTTAGCCTGTTACCCTACTGCTTACGGGGTTAAAGCGAGTCTTCGACCTACT
1 AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGCT
* * * *
86033073 CCGCCATTGCTCGGTGAGTC
66 CCACCACTGCTCGGCGAGAC
* * * *
86033093 CAGATCTGTAAATTTTAGCCTGTTACCCTACTACTTAAGGGGTTAAGGCGTCTA-TCTTTGATCT
1 AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCG---AGTCTTTGACCT
** *
86033157 GCTCTGCCACTGCTCGGCGAGCC
63 GCTCCACCACTGCTCGGCGAGAC
* * * * * *
86033180 CAGATCTATAAATTTTAGCCTGTTACCCTACTACTTAGGGGGTGAAGGCGTGTATCTTTGATCTG
1 AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAG--TCTTTGACCTG
* * * * *
86033245 CTCCACTATTACTTAGG-GAGAT
64 CTCCACCACTGC-TCGGCGAGAC
* * * * * * * * *
86033267 AAGATCTAT-AATCTTCAGCTTGTTACTCTATTGCTTAGGGAGTTAAAGCGTGTATCTTTGATCT
1 AAGATCTGTAAAT-TTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAG--TCTTTGACCT
* * ****
86033331 GCTCCACTACCGCTTAATGAGAC
63 GCTCCACCACTGCTCGGCGAGAC
* **
86033354 AATATCTGTAGTTTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAG
1 AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAG
86033401 ACTGGTGGTT
Statistics
Matches: 398, Mismatches: 67, Indels: 23
0.82 0.14 0.05
Matches are distributed among these distances:
84 12 0.03
85 178 0.45
86 9 0.02
87 194 0.49
88 5 0.01
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (85 bp):
AAGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTTGACCTGCT
CCACCACTGCTCGGCGAGAC
Found at i:86033602 original size:132 final size:132
Alignment explanation
Indices: 86033367--86033860 Score: 611
Period size: 132 Copynumber: 3.7 Consensus size: 132
86033357 ATCTGTAGTT
* * * * * * * * *
86033367 TTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGACTGGTGGTTTG-AATTTGCTCCATTACCGA
1 TTTAGCCTGTTACACTCCTGCTCAGTGGGATAAGGCTGGTGG-CTGAAATCTGCTCCATTGCCGA
* *
86033431 TACATGGAGATAAGATCCGCTGAAATTTGATATGTTCCACTCCTGCTAGTGGGATGAGATCTGCT
65 TACATGGAGATAAGATCCGCTAAAATTTGATCTGTTCCACTCCTGCTAGTGGGATGAGATCTGCT
86033496 ATA
130 ATA
* * * *
86033499 TTTAGCCTATTACACTCCTGCTCAGTGGGATAATGCTGGTGGTTTG-AATCTGCTCCATTGCTGA
1 TTTAGCCTGTTACACTCCTGCTCAGTGGGATAAGGCTGGTGG-CTGAAATCTGCTCCATTGCCGA
* * * * * *
86033563 TACATGGAGATAAGATTCGTTAAAATTTGATCTGATCCACTCCTGCTCAGCGAAGATAAGATCTA
65 TACATGGAGATAAGATCCGCTAAAATTTGATCTGTTCCACTCCTGCT-AGTG-GGATGAGATCT-
*
86033628 G--A-G
127 GCTATA
* * *
86033631 TTTAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGA
1 TTTAGCCTGTTACACTCCTGCTCAGTG-GGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGA
* *
86033696 TACATGGAGACAAGATCCGCTAAAATTTGATCTGTTCCACTCCTGCCAGTGGGATGAGATCTGCT
65 TACATGGAGATAAGATCCGCTAAAATTTGATCTGTTCCACTCCTGCTAGTGGGATGAGATCTGCT
86033761 ATA
130 ATA
* *
86033764 TTTAGCCTGTTCCACTCCTGCTCAGTGGGATAAGGCTTGTGGCTGAAATCTGCTCCATTGCCGAT
1 TTTAGCCTGTTACACTCCTGCTCAGTGGGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGAT
* * *
86033829 ACATGGAGGTAAGATTCGCCAAAATTTGATCT
66 ACATGGAGATAAGATCCGCTAAAATTTGATCT
86033861 ACTCTGCTCC
Statistics
Matches: 311, Mismatches: 43, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
130 1 0.00
131 9 0.03
132 189 0.61
133 102 0.33
134 9 0.03
135 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (132 bp):
TTTAGCCTGTTACACTCCTGCTCAGTGGGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGAT
ACATGGAGATAAGATCCGCTAAAATTTGATCTGTTCCACTCCTGCTAGTGGGATGAGATCTGCTA
TA
Found at i:86033962 original size:180 final size:178
Alignment explanation
Indices: 86033718--86034076 Score: 489
Period size: 180 Copynumber: 2.0 Consensus size: 178
86033708 AGATCCGCTA
* *
86033718 AAATTTGATCTGTTCCACTCCTGCCAGTGGGATGAGATCTGCTATATTTAGCCTGTTCCACTCCT
1 AAATTTGATCTGTTCCACTCCAGCCAGTGGGATGAGATCTACTATATTTAGCCTGTTCCACTCCT
* * * * * *
86033783 GCTCAGTGGGATAAGGCTTGTGGCTGAAATC-TGCTCCATTGCCGATACATGGAG-G-TAAGATT
66 GCTCAGT-GAAGAAGGCTGGTCGCTGAAATCTTGCTCCATTGCCGACACATGGAGAGAGAAGATT
* *
86033845 CGCCAAAATTTGATCTACT-CTGCTCCTGCTCAGCGAAGATAAAGATCTGTCG
130 CGCCAAAATTTGATCTACTGCCGCTCCTGATCA--GAAGAT-AAGA-CTGTCG
86033897 AAATTTGATCTGTTCCAGCTCCAGCCAGTGGGATGAGATAGCTACTATA-TTAG-CTGCTT-CAC
1 AAATTTGATCTGTTCCA-CTCCAGCCAGTGGGATGAGAT--CTACTATATTTAGCCTG-TTCCAC
86033959 TCCTGCTCAGTGAAGAAGGCTGGTCGCTGAAATCTTGCTCCATTGCCGACACATGGAGAGAGAAG
62 TCCTGCTCAGTGAAGAAGGCTGGTCGCTGAAATCTTGCTCCATTGCCGACACATGGAGAGAGAAG
*
86034024 ATTCGCCAAAATTTGATCTGCTGCCGCTCCTGATCAGAAGATAAGACTGTCG
127 ATTCGCCAAAATTTGATCTACTGCCGCTCCTGATCAGAAGATAAGACTGTCG
86034076 A
1 A
86034077 TAGATCTTGA
Statistics
Matches: 161, Mismatches: 11, Indels: 16
0.86 0.06 0.09
Matches are distributed among these distances:
179 43 0.27
180 63 0.39
181 13 0.08
182 31 0.19
183 11 0.07
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.28
Consensus pattern (178 bp):
AAATTTGATCTGTTCCACTCCAGCCAGTGGGATGAGATCTACTATATTTAGCCTGTTCCACTCCT
GCTCAGTGAAGAAGGCTGGTCGCTGAAATCTTGCTCCATTGCCGACACATGGAGAGAGAAGATTC
GCCAAAATTTGATCTACTGCCGCTCCTGATCAGAAGATAAGACTGTCG
Found at i:86035415 original size:11 final size:10
Alignment explanation
Indices: 86035395--86035467 Score: 57
Period size: 9 Copynumber: 7.5 Consensus size: 10
86035385 CCCTCATTTG
86035395 CTTTTCTTTT
1 CTTTTCTTTT
86035405 CTTTCTCTTTT
1 CTTT-TCTTTT
*
86035416 -TTGT-TTTT
1 CTTTTCTTTT
86035424 CTTTTCTTTTT
1 CTTTTC-TTTT
*
86035435 CCTTTTTTTTT
1 -CTTTTCTTTT
*
86035446 C-TTTCATTT
1 CTTTTCTTTT
86035455 -TTTTCTTTT
1 CTTTTCTTTT
86035464 -TTTT
1 CTTTT
86035468 TTGAAAATGA
Statistics
Matches: 51, Mismatches: 6, Indels: 13
0.73 0.09 0.19
Matches are distributed among these distances:
8 4 0.08
9 21 0.41
10 7 0.14
11 14 0.27
12 5 0.10
ACGTcount: A:0.01, C:0.16, G:0.01, T:0.81
Consensus pattern (10 bp):
CTTTTCTTTT
Found at i:86035422 original size:18 final size:18
Alignment explanation
Indices: 86035396--86035469 Score: 75
Period size: 18 Copynumber: 4.2 Consensus size: 18
86035386 CCTCATTTGC
86035396 TTTTC-TTTTCTTTCTCTT
1 TTTTCTTTTTCTTT-TCTT
*
86035414 TTTTGTTTTTCTTTTCTT
1 TTTTCTTTTTCTTTTCTT
*
86035432 TTTCCTTTTT-TTTTCTT
1 TTTTCTTTTTCTTTTCTT
*
86035449 TCATT-TTTTTCTTTT-TT
1 T-TTTCTTTTTCTTTTCTT
86035466 TTTT
1 TTTT
86035470 GAAAATGAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
16 2 0.04
17 16 0.34
18 21 0.45
19 8 0.17
ACGTcount: A:0.01, C:0.15, G:0.01, T:0.82
Consensus pattern (18 bp):
TTTTCTTTTTCTTTTCTT
Found at i:86035423 original size:24 final size:24
Alignment explanation
Indices: 86035391--86035467 Score: 84
Period size: 24 Copynumber: 3.1 Consensus size: 24
86035381 TTGGCCCTCA
*
86035391 TTTGCTTTTCTTTTCTTTCTCTTT
1 TTTGTTTTTCTTTTCTTTCTCTTT
*
86035415 TTTGTTTTTCTTTTCTTTTTCCTTT
1 TTTGTTTTTCTTTTCTTTCT-CTTT
* *
86035440 TTTTTTCTTTCATTTT-TTTCTTTTT
1 TTTGTT-TTTC-TTTTCTTTCTCTTT
86035465 TTT
1 TTT
86035468 TTGAAAATGA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
24 18 0.40
25 15 0.33
26 8 0.18
27 4 0.09
ACGTcount: A:0.01, C:0.16, G:0.03, T:0.81
Consensus pattern (24 bp):
TTTGTTTTTCTTTTCTTTCTCTTT
Found at i:86035426 original size:13 final size:12
Alignment explanation
Indices: 86035396--86035469 Score: 64
Period size: 11 Copynumber: 6.2 Consensus size: 12
86035386 CCTCATTTGC
*
86035396 TTTTC-TTTTCT
1 TTTTCTTTTTTT
*
86035407 TTCTCTTTTTTGT
1 TTTTCTTTTTT-T
*
86035420 TTTTC-TTTTCT
1 TTTTCTTTTTTT
*
86035431 TTTTC-CTTTTT
1 TTTTCTTTTTTT
*
86035442 TTTTCTTTCATTT
1 TTTTCTTT-TTTT
86035455 TTTTCTTTTTTT
1 TTTTCTTTTTTT
86035467 TTT
1 TTT
86035470 GAAAATGAAG
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
11 19 0.38
12 15 0.30
13 16 0.32
ACGTcount: A:0.01, C:0.15, G:0.01, T:0.82
Consensus pattern (12 bp):
TTTTCTTTTTTT
Found at i:86035435 original size:35 final size:35
Alignment explanation
Indices: 86035396--86035469 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 35
86035386 CCTCATTTGC
*
86035396 TTTT-CTTTTCTTTCTCTTT-TTTGTTTTTCTTTTCT
1 TTTTCCTTTT-TTTCTCTTTCATT-TTTTTCTTTTCT
* *
86035431 TTTTCCTTTTTTTTTCTTTCATTTTTTTCTTTTTT
1 TTTTCCTTTTTTTCTCTTTCATTTTTTTCTTTTCT
86035466 TTTT
1 TTTT
86035470 GAAAATGAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 27 0.79
36 7 0.21
ACGTcount: A:0.01, C:0.15, G:0.01, T:0.82
Consensus pattern (35 bp):
TTTTCCTTTTTTTCTCTTTCATTTTTTTCTTTTCT
Found at i:86035439 original size:7 final size:6
Alignment explanation
Indices: 86035396--86035469 Score: 59
Period size: 6 Copynumber: 12.7 Consensus size: 6
86035386 CCTCATTTGC
* * *
86035396 TTTTC- TTTTCT TTCTCTT TTTTGT TTTTC- TTTTCT TTTTCC TTTT-T
1 TTTTCT TTTTCT TTTTC-T TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
86035442 TTTTCT TTCATT-T TTTTCT TTTT-T TTTT
1 TTTTCT TT--TTCT TTTTCT TTTTCT TTTT
86035470 GAAAATGAAG
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
5 21 0.38
6 26 0.46
7 7 0.12
8 2 0.04
ACGTcount: A:0.01, C:0.15, G:0.01, T:0.82
Consensus pattern (6 bp):
TTTTCT
Found at i:86038463 original size:21 final size:21
Alignment explanation
Indices: 86038437--86038481 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
86038427 GCTGGCTCAT
*
86038437 CATGTTGTTCTGTGACTCCAG
1 CATGTTGTTCTGGGACTCCAG
*
86038458 CATGTTTTTCTGGGACTCCAG
1 CATGTTGTTCTGGGACTCCAG
86038479 CAT
1 CAT
86038482 TTGATCCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (21 bp):
CATGTTGTTCTGGGACTCCAG
Found at i:86042127 original size:126 final size:127
Alignment explanation
Indices: 86041967--86042205 Score: 435
Period size: 126 Copynumber: 1.9 Consensus size: 127
86041957 GTTTTAGCCT
86041967 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
* *
86042032 CTTCAAATTCTTTAAATACTGAACATTGCCTTTATTTT-AAAATTTTTTTAGAGTGAACTGG
66 CTTCAAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTTTAGAGTGAACTGG
*
86042093 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
*
86042158 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTT
66 CTTCAAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTT
86042206 GAGAGAAGAT
Statistics
Matches: 108, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
126 100 0.93
127 8 0.07
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (127 bp):
TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
CTTCAAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTTTAGAGTGAACTGG
Found at i:86042343 original size:13 final size:12
Alignment explanation
Indices: 86042311--86042360 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
86042301 AACCATGTAT
86042311 AAATAA-TAA-A
1 AAATAATTAATA
86042321 AAATAA-TAATA
1 AAATAATTAATA
*
86042332 ATAGTAATTAATA
1 A-AATAATTAATA
86042345 GAAATAATTAATA
1 -AAATAATTAATA
86042358 AAA
1 AAA
86042361 CAACAGTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 9 0.26
11 2 0.06
12 7 0.21
13 15 0.44
14 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (12 bp):
AAATAATTAATA
Found at i:86042746 original size:29 final size:29
Alignment explanation
Indices: 86042704--86042807 Score: 70
Period size: 30 Copynumber: 3.4 Consensus size: 29
86042694 ATAATATAAC
86042704 AATATGAAACATAACTCAAATTAATTAAATT
1 AATA-GAAA-ATAACTCAAATTAATTAAATT
** *
86042735 AATAGAAAATAA-T-AAAAAAATATAAAAAT
1 AATAGAAAATAACTCAAATTAAT-T-AAATT
* *
86042764 AATGAGAATAA-AGCTCAAATTAATTAATTT
1 AAT-AGAA-AATAACTCAAATTAATTAAATT
*
86042794 AACAGTAAAATAAC
1 AATAG-AAAATAAC
86042808 AAAAATAAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 17
0.67 0.12 0.21
Matches are distributed among these distances:
27 6 0.11
28 2 0.04
29 15 0.27
30 18 0.33
31 8 0.15
32 6 0.11
ACGTcount: A:0.61, C:0.07, G:0.06, T:0.27
Consensus pattern (29 bp):
AATAGAAAATAACTCAAATTAATTAAATT
Found at i:86042749 original size:59 final size:61
Alignment explanation
Indices: 86042684--86042815 Score: 166
Period size: 59 Copynumber: 2.2 Consensus size: 61
86042674 TAATAAATAT
* *
86042684 ATAATAACAAATAATATAACAAT-ATGAAACAT-AA-CTCAAATTAATTAAATTAATAG-AAA
1 ATAATAA-AAATAATATAAAAATAATGAAA-ATAAAGCTCAAATTAATTAAATTAACAGTAAA
* *
86042743 ATAATAAAAA-AATATAAAAATAATGAGAATAAAGCTCAAATTAATTAATTTAACAGTAAA
1 ATAATAAAAATAATATAAAAATAATGAAAATAAAGCTCAAATTAATTAAATTAACAGTAAA
*
86042803 ATAACAAAAATAA
1 ATAATAAAAATAA
86042816 AAAAGGGGTT
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
57 12 0.19
58 10 0.16
59 27 0.43
60 12 0.19
61 2 0.03
ACGTcount: A:0.63, C:0.07, G:0.05, T:0.26
Consensus pattern (61 bp):
ATAATAAAAATAATATAAAAATAATGAAAATAAAGCTCAAATTAATTAAATTAACAGTAAA
Found at i:86043113 original size:18 final size:18
Alignment explanation
Indices: 86043090--86043162 Score: 69
Period size: 18 Copynumber: 4.0 Consensus size: 18
86043080 ATAACAAGTA
*
86043090 GGGTGATGGAGTTAGTGG
1 GGGTGATGGAGGTAGTGG
86043108 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
* * *
86043126 ATGGT-TTAGTAGGGTA-TGG
1 -GGGTGAT-GGA-GGTAGTGG
86043145 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
86043163 ATGGTTTAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
17 4 0.09
18 26 0.60
19 9 0.21
20 4 0.09
ACGTcount: A:0.18, C:0.00, G:0.55, T:0.27
Consensus pattern (18 bp):
GGGTGATGGAGGTAGTGG
Found at i:86043155 original size:37 final size:37
Alignment explanation
Indices: 86043105--86043175 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
86043095 ATGGAGTTAG
86043105 TGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGTA
1 TGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGTA
86043142 TGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGG
1 TGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGG
86043176 TGATGGAGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.18, C:0.00, G:0.52, T:0.30
Consensus pattern (37 bp):
TGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGTA
Found at i:86043177 original size:28 final size:28
Alignment explanation
Indices: 86043146--86043200 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
86043136 AGGGTATGGG
86043146 GGTGATGGAGGTAGTGGATGGTTTAGTA
1 GGTGATGGAGGTAGTGGATGGTTTAGTA
* *
86043174 GGTGATGGAGTTAGTGGTTGGTTTAGT
1 GGTGATGGAGGTAGTGGATGGTTTAGT
86043201 GGGATGTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.36
Consensus pattern (28 bp):
GGTGATGGAGGTAGTGGATGGTTTAGTA
Found at i:86046050 original size:18 final size:18
Alignment explanation
Indices: 86046023--86046060 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
86046013 CTTCTACCCT
86046023 TTCCCCTTTCCCTTCCCC
1 TTCCCCTTTCCCTTCCCC
*
86046041 TTCCCTTTTCCCTTCCCC
1 TTCCCCTTTCCCTTCCCC
86046059 TT
1 TT
86046061 GGATTGCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (18 bp):
TTCCCCTTTCCCTTCCCC
Found at i:86048474 original size:3 final size:3
Alignment explanation
Indices: 86048466--86048492 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
86048456 AACACCACAT
86048466 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
86048493 CCATAGCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:86056636 original size:7 final size:6
Alignment explanation
Indices: 86056621--86056678 Score: 50
Period size: 6 Copynumber: 9.8 Consensus size: 6
86056611 CAGAATAAAA
* *
86056621 AAAATT AAAATGT AAAAAAT AAAA-T AAAA-T AAAATA AAAATT AAAA-T
1 AAAATT AAAAT-T -AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT
*
86056668 AAAAAT AAAAT
1 AAAATT AAAAT
86056679 GACTAAATTA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 15 0.34
6 23 0.52
7 2 0.05
8 4 0.09
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (6 bp):
AAAATT
Found at i:86056644 original size:6 final size:6
Alignment explanation
Indices: 86056635--86056677 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
86056625 TTAAAATGTA
*
86056635 AAAAAT -AAAAT -AAAAT -AAAAT AAAAAT TAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
86056678 TGACTAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 15 0.44
6 19 0.56
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:86056646 original size:5 final size:5
Alignment explanation
Indices: 86056614--86056678 Score: 62
Period size: 5 Copynumber: 12.6 Consensus size: 5
86056604 AATCTGTCAG
**
86056614 AATAA AA-AA AATTAA AATGT AA-AA AATAA AATAA AATAA AATAAA AATTAA
1 AATAA AATAA AA-TAA AATAA AATAA AATAA AATAA AATAA AAT-AA AA-TAA
86056665 AATAAA AATAA AAT
1 AAT-AA AATAA AAT
86056679 GACTAAATTA
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
4 6 0.12
5 26 0.52
6 17 0.34
7 1 0.02
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.22
Consensus pattern (5 bp):
AATAA
Found at i:86056678 original size:17 final size:17
Alignment explanation
Indices: 86056617--86056678 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
86056607 CTGTCAGAAT
86056617 AAAA-AAAATTAAAATGTAA
1 AAAATAAAATTAAAA--T-A
86056636 AAAATAAAA-TAAAAT-
1 AAAATAAAATTAAAATA
86056651 AAAATAAAAATTAAAATA
1 AAAAT-AAAATTAAAATA
86056669 AAAATAAAAT
1 AAAATAAAAT
86056679 GACTAAATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.13
16 4 0.10
17 12 0.31
18 5 0.13
19 9 0.23
20 4 0.10
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (17 bp):
AAAATAAAATTAAAATA
Found at i:86057793 original size:26 final size:26
Alignment explanation
Indices: 86057763--86057813 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
86057753 CCACATGGCC
*
86057763 GTGTGTAAGCCCTTGTGGCTCACACA
1 GTGTGTAAGCCCGTGTGGCTCACACA
*
86057789 GTGTGTAAGCTCGTGTGGCTCACAC
1 GTGTGTAAGCCCGTGTGGCTCACAC
86057814 GGCCATATGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.18, C:0.25, G:0.29, T:0.27
Consensus pattern (26 bp):
GTGTGTAAGCCCGTGTGGCTCACACA
Found at i:86060196 original size:24 final size:24
Alignment explanation
Indices: 86060169--86060222 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
86060159 ATTTAGTATT
*
86060169 TATTAGTATAAAATATCTAACATC
1 TATTAGCATAAAATATCTAACATC
* * * *
86060193 TATTAGCATAATATATTTGACATT
1 TATTAGCATAAAATATCTAACATC
86060217 TATTAG
1 TATTAG
86060223 AAATAAGGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (24 bp):
TATTAGCATAAAATATCTAACATC
Found at i:86069743 original size:50 final size:50
Alignment explanation
Indices: 86069670--86069870 Score: 206
Period size: 50 Copynumber: 4.0 Consensus size: 50
86069660 TAAGATGGTT
* * *
86069670 TTAGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGGTAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAG
* * * * * * *
86069720 TTAGGTCGCATGTGTAGTACTAAGTGCAGGATACTATGCGTACCTGACAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGA-TAG
* ** ** ** *
86069771 TTCA-ATCACGTGTGTAGTACTAAGCACAGGCTACTACATGTATAAGATGG
1 TT-AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAG
*
86069821 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAG
86069871 CTTCGGTTAC
Statistics
Matches: 114, Mismatches: 34, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
49 1 0.01
50 78 0.68
51 34 0.30
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAG
Found at i:86069824 original size:101 final size:101
Alignment explanation
Indices: 86069679--86069864 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 101
86069669 TTTAGGTCAT
** * * * *
86069679 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGGTAGTTAGGTCGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGCACAGGCTACTACATGTACAAGATAGTTAGGTCACATGTGTAGTACTAAG
86069744 TGCAGGATACTATGCGTACCTGACAACTTCAATCAC
66 TGCAGGATACTATGCGTACCTGACAACTTCAATCAC
* * *
86069780 GTGTGTAGTACTAAGCACAGGCTACTACATGTATAAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGCACAGGCTACTACATGTACAAGATAGTTAGGTCACATGTGTAGTACTAAG
*
86069845 TGCAGGCTACTATGCGTACC
66 TGCAGGATACTATGCGTACC
86069865 AGATAGCTTC
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 75 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (101 bp):
GTGTGTAGTACTAAGCACAGGCTACTACATGTACAAGATAGTTAGGTCACATGTGTAGTACTAAG
TGCAGGATACTATGCGTACCTGACAACTTCAATCAC
Found at i:86076329 original size:26 final size:26
Alignment explanation
Indices: 86076300--86076407 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
86076290 TGGTACAAAT
86076300 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
86076326 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86076352 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
86076378 TGATAATGGTTTAGGCAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86076404 TGAT
1 TGAT
86076408 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:86077922 original size:26 final size:26
Alignment explanation
Indices: 86077859--86077934 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 26
86077849 AAAAGTAGCT
* * *
86077859 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-GTGGA
*
86077887 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTGTTATACCCCTAGGTGGA
86077913 AAATTACTGTTATACCCCTAGG
1 AAATTACTGTTATACCCCTAGG
86077935 GTTAATTTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 25 0.57
27 1 0.02
28 18 0.41
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGGTGGA
Found at i:86078079 original size:27 final size:26
Alignment explanation
Indices: 86078038--86078142 Score: 120
Period size: 27 Copynumber: 3.9 Consensus size: 26
86078028 AGGAAGCGTC
*
86078038 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
* * *
86078065 CTCGTGGCTCTGCCATATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGAT
86078092 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG-AT
* * *
86078119 CTGGTGACTTTGTCACAATATCTG
1 CTGGTGGCTCTGCCACAATATCTG
86078143 GCAGTCTCGC
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 58 0.88
28 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:86083381 original size:26 final size:26
Alignment explanation
Indices: 86083352--86083458 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
86083342 TGGTACAAAT
86083352 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
86083378 TGATAATGGATTAGGTAAATATT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
86083403 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
86083429 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86083455 TGAT
1 TGAT
86083459 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
25 23 0.31
26 52 0.69
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:86083412 original size:51 final size:52
Alignment explanation
Indices: 86083352--86083458 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
86083342 TGGTACAAAT
86083352 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATT-CA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
86083403 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
86083455 TGAT
1 TGAT
86083459 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 47 0.89
52 6 0.11
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:86085154 original size:27 final size:27
Alignment explanation
Indices: 86085067--86085171 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 27
86085057 AGGAAGCGTC
* *
86085067 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGACTCTGCCACAA-TATCTGTAT
*
86085094 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGACTCTGCCACA-ATATCTGTAT
86085121 CTGGTGACTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGTAT
*
86085148 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
86085172 GCAGCCTCGC
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 9 0.13
27 61 0.86
28 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGACTCTGCCACAATATCTGTAT
Found at i:86086666 original size:50 final size:50
Alignment explanation
Indices: 86086612--86086861 Score: 216
Period size: 50 Copynumber: 5.0 Consensus size: 50
86086602 TAAGATGGTT
**
86086612 TTAGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * * *
86086662 TTAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGACAAC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAG
* * *
86086713 TTCA-ATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
1 TT-AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * ** ** *
86086763 TTAGTTCACGTATGTAGTACTAAGTGTAGGCTACTACAAGTACTGGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * * *
86086813 TT-GGTCGCATATGTAGTACTAAGTGTAGGTTACTATGCGTACCAAATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
86086862 CTTCGGTTAC
Statistics
Matches: 157, Mismatches: 40, Indels: 7
0.77 0.20 0.03
Matches are distributed among these distances:
49 37 0.24
50 80 0.51
51 39 0.25
52 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
Found at i:86087080 original size:16 final size:15
Alignment explanation
Indices: 86087059--86087088 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
86087049 GAATGGAGTA
86087059 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
86087075 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
86087089 TAAAACAGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:86089155 original size:24 final size:24
Alignment explanation
Indices: 86089127--86089202 Score: 98
Period size: 24 Copynumber: 3.2 Consensus size: 24
86089117 TTTCTAGAAG
* *
86089127 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
*
86089151 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATTAGCATAATAT
* * *
86089175 TTTTAACATTTATTAGCATATTAT
1 ATTTAGCATTTATTAGCATAATAT
86089199 ATTT
1 ATTT
86089203 GACATTGATT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:86089207 original size:24 final size:23
Alignment explanation
Indices: 86089134--86089213 Score: 88
Period size: 24 Copynumber: 3.3 Consensus size: 23
86089124 AAGATTTAGT
*
86089134 ATTTATTAGTATAATATATTTAGC
1 ATTTATTAGCATAATATATTTA-C
* *
86089158 ATTTATTAACATAATATTTTTAAC
1 ATTTATTAGCATAATATATTT-AC
*
86089182 ATTTATTAGCATATTATATTTGAC
1 ATTTATTAGCATAATATATTT-AC
*
86089206 ATTGATTA
1 ATTTATTA
86089214 AAATAAGGTG
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
24 46 0.98
25 1 0.02
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (23 bp):
ATTTATTAGCATAATATATTTAC
Found at i:86097709 original size:19 final size:18
Alignment explanation
Indices: 86097681--86097729 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
86097671 AGAAGAAAGG
86097681 AATATTAGAAAAAAATGGA
1 AATA-TAGAAAAAAATGGA
86097700 AATATCAG--AAAAATGGA
1 AATAT-AGAAAAAAATGGA
86097717 AATA-AGAAAAAAA
1 AATATAGAAAAAAA
86097730 ATAGAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
15 2 0.07
17 18 0.67
18 1 0.04
19 6 0.22
ACGTcount: A:0.67, C:0.02, G:0.14, T:0.16
Consensus pattern (18 bp):
AATATAGAAAAAAATGGA
Found at i:86097728 original size:17 final size:17
Alignment explanation
Indices: 86097687--86097739 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
86097677 AAGGAATATT
86097687 AGAAAAAAATGGAAATA
1 AGAAAAAAATGGAAATA
** *
86097704 TCAGAAAAATGGAAATA
1 AGAAAAAAATGGAAATA
*
86097721 AGAAAAAAAATAGAAATA
1 AG-AAAAAAATGGAAATA
86097739 A
1 A
86097740 TTTTTAAAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.70, C:0.02, G:0.15, T:0.13
Consensus pattern (17 bp):
AGAAAAAAATGGAAATA
Found at i:86097730 original size:18 final size:18
Alignment explanation
Indices: 86097689--86097739 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
86097679 GGAATATTAG
**
86097689 AAAAAAATGGAAAT-ATC
1 AAAAAAATGGAAATAAGA
*
86097706 AGAAAAATGGAAATAAGA
1 AAAAAAATGGAAATAAGA
*
86097724 AAAAAAATAGAAATAA
1 AAAAAAATGGAAATAA
86097740 TTTTTAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 13 0.46
18 15 0.54
ACGTcount: A:0.71, C:0.02, G:0.14, T:0.14
Consensus pattern (18 bp):
AAAAAAATGGAAATAAGA
Found at i:86097762 original size:22 final size:21
Alignment explanation
Indices: 86097737--86097778 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
86097727 AAAATAGAAA
86097737 TAATTTTTAAAAATATTTTTAT
1 TAATTTTT-AAAATATTTTTAT
*
86097759 TAATTTTTAATATATTTTTA
1 TAATTTTTAAAATATTTTTA
86097779 GATAATGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TAATTTTTAAAATATTTTTAT
Found at i:86097784 original size:22 final size:22
Alignment explanation
Indices: 86097735--86097784 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
86097725 AAAAAATAGA
86097735 AATAATTTTTAAAAATATTTTT
1 AATAATTTTTAAAAATATTTTT
* *
86097757 ATTAATTTTT-AATATATTTTT
1 AATAATTTTTAAAAATATTTTT
86097778 AGATAAT
1 A-ATAAT
86097785 GAAATCATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
AATAATTTTTAAAAATATTTTT
Found at i:86100372 original size:3 final size:3
Alignment explanation
Indices: 86100364--86100417 Score: 99
Period size: 3 Copynumber: 18.0 Consensus size: 3
86100354 ACCTAATCTC
86100364 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
*
86100412 CAT CTT
1 CTT CTT
86100418 TATCTACATT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:86105458 original size:27 final size:27
Alignment explanation
Indices: 86105428--86105484 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
86105418 AATTCACTTT
86105428 TCAATTTCCAA-TCAATACTA-ATTTCAA
1 TCAA-TTCCAATTCAATAC-ACATTTCAA
86105455 TCAATTCCAATTCAATACACATTTCAA
1 TCAATTCCAATTCAATACACATTTCAA
86105482 TCA
1 TCA
86105485 TTCATATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.40, C:0.25, G:0.00, T:0.35
Consensus pattern (27 bp):
TCAATTCCAATTCAATACACATTTCAA
Found at i:86105466 original size:16 final size:16
Alignment explanation
Indices: 86105429--86105470 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
86105419 ATTCACTTTT
86105429 CAATTTCCAATCAATAC
1 CAATTT-CAATCAATAC
* *
86105446 TAATTTCAATCAATTC
1 CAATTTCAATCAATAC
86105462 CAA-TTCAAT
1 CAATTTCAAT
86105471 ACACATTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 6 0.27
16 11 0.50
17 5 0.23
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (16 bp):
CAATTTCAATCAATAC
Found at i:86106206 original size:17 final size:15
Alignment explanation
Indices: 86106174--86106209 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 15
86106164 AACCCTAATT
86106174 TTTCCCTTTTCTTTC
1 TTTCCCTTTTCTTTC
86106189 TTTCCCTTTTTCCTTTC
1 TTTCCC-TTTT-CTTTC
86106206 TTTC
1 TTTC
86106210 TTTCTCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 4 0.21
17 9 0.47
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTCCCTTTTCTTTC
Found at i:86106226 original size:21 final size:21
Alignment explanation
Indices: 86106180--86106237 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 21
86106170 AATTTTTCCC
*
86106180 TTTTCTTTC-TT-TCCCTTTT
1 TTTTCTTTCTTTCTCCCTTAT
86106199 TCCTTTCTTTCTTTCTCCCTTAT
1 T--TTTCTTTCTTTCTCCCTTAT
86106222 TTTTCGTTTCTATTCT
1 TTTTC-TTTCT-TTCT
86106238 GTTCTTCTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
19 1 0.03
21 12 0.38
22 7 0.22
23 12 0.38
ACGTcount: A:0.03, C:0.28, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTTCTTTCTTTCTCCCTTAT
Found at i:86106308 original size:16 final size:16
Alignment explanation
Indices: 86106287--86106325 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
86106277 AGTTTATGTT
*
86106287 TATTATATTAATATAA
1 TATTATATTAACATAA
86106303 TATTATATTAACATAA
1 TATTATATTAACATAA
86106319 TAATTAT
1 T-ATTAT
86106326 TAGTTCTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (16 bp):
TATTATATTAACATAA
Found at i:86108058 original size:13 final size:13
Alignment explanation
Indices: 86108040--86108065 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86108030 CTGTGCATTC
86108040 TTAGTTTAGATAA
1 TTAGTTTAGATAA
86108053 TTAGTTTAGATAA
1 TTAGTTTAGATAA
86108066 AACAAATCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
TTAGTTTAGATAA
Found at i:86120049 original size:16 final size:16
Alignment explanation
Indices: 86120028--86120058 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86120018 CTATGCATAC
*
86120028 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
86120044 AAAATACAAAAGACA
1 AAAATACAAAAGACA
86120059 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:86128757 original size:15 final size:15
Alignment explanation
Indices: 86128737--86128766 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
86128727 AATACATAGT
86128737 CCTCTGTCCTATGAC
1 CCTCTGTCCTATGAC
86128752 CCTCTGTCCTATGAC
1 CCTCTGTCCTATGAC
86128767 TACATTAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.40, G:0.13, T:0.33
Consensus pattern (15 bp):
CCTCTGTCCTATGAC
Done.