Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 264 of 325
Found at i:86134158 original size:50 final size:50
Alignment explanation
Indices: 86134083--86134426 Score: 384
Period size: 50 Copynumber: 6.9 Consensus size: 50
86134073 ATCGAAGCTC
* * * *
86134083 TCTGGTACCCATAGTAGCCTACACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * *
86134133 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
** * * *
86134183 TCTAATGCACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * *
86134233 TCTGGTACACGTAATAGCCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * * ** *
86134283 TATGATACATGTATTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * ** *
86134335 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACGTGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
*
86134384 TCTGGTACACGTAGTAGTCTGCACTTAGTACTACACACGTGAC
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
86134427 TCACAACGAA
Statistics
Matches: 236, Mismatches: 55, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
49 3 0.01
50 200 0.85
51 32 0.14
52 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:86134803 original size:19 final size:20
Alignment explanation
Indices: 86134775--86134821 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
86134765 AAGAACATGT
86134775 TATATCATCAAAATACTCACA
1 TATAT-ATCAAAATACTCACA
* *
86134796 TA-ATATCAAATTATTCACA
1 TATATATCAAAATACTCACA
86134815 TATATAT
1 TATATAT
86134822 ACTTAAAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATACTCACA
Found at i:86136407 original size:24 final size:23
Alignment explanation
Indices: 86136361--86136407 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
86136351 TAAACCCGAC
* *
86136361 ATGGCGTGTAGGGATGGTCGAAG
1 ATGGAGTGTAGGGATGGGCGAAG
*
86136384 ATGGAGTGTAGAGGATGGGGGAAG
1 ATGGAGTGTAG-GGATGGGCGAAG
86136408 GATATTTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.26, C:0.04, G:0.51, T:0.19
Consensus pattern (23 bp):
ATGGAGTGTAGGGATGGGCGAAG
Found at i:86139712 original size:16 final size:16
Alignment explanation
Indices: 86139693--86139724 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
86139683 AATTGTTTTA
86139693 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
86139709 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
86139725 ACTCTATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:86140000 original size:50 final size:50
Alignment explanation
Indices: 86139924--86140318 Score: 362
Period size: 50 Copynumber: 7.9 Consensus size: 50
86139914 ATCGAAGCTC
* * * *
86139924 TCTGGTACCCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * * * *
86139974 TCTGGTACACGTAGTAGCCTGAACTTAGTACTATACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * ** *
86140024 TCTGATACATGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * * ** *
86140076 -CGGGTACGCATAGTAGCCTGCACTTAGTACTGTACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * * * *
86140125 TCTGGTACACGTAGCAACCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * ** *
86140175 TCTGATACACGTATTAGCCTACACTTAGTACTACACATGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* ** * *
86140227 -CGGGTAGGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * *
86140276 TCTAGTACACGTAGTAGCCTGCACTTAGAACTACACAAGTGAC
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGAC
86140319 TCACAACAAA
Statistics
Matches: 266, Mismatches: 73, Indels: 12
0.76 0.21 0.03
Matches are distributed among these distances:
49 6 0.02
50 189 0.71
51 69 0.26
52 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
Found at i:86140128 original size:101 final size:101
Alignment explanation
Indices: 86139985--86140166 Score: 265
Period size: 101 Copynumber: 1.8 Consensus size: 101
86139975 CTGGTACACG
* * * * * *
86139985 TAGTAGCCTGAACTTAGTACTATACACGTGACTTAACCATCTGATACATGTAGTAGCCTGCACTT
1 TAGTAGCCTGAACTTAGTACTATACACGCGACCTAACAATCTGATACACGTAGCAACCTGCACTT
86140050 AGTACTACACACGTGATCGAAGTTAACGGGTACGCA
66 AGTACTACACACGTGATCGAAGTTAACGGGTACGCA
* * * * *
86140086 TAGTAGCCTGCACTTAGTACTGTACATGCGACCTATCAATCTGGTACACGTAGCAACCTGCACTT
1 TAGTAGCCTGAACTTAGTACTATACACGCGACCTAACAATCTGATACACGTAGCAACCTGCACTT
86140151 AGTACTACACACGTGA
66 AGTACTACACACGTGA
86140167 CTTAACCATC
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
101 70 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGAACTTAGTACTATACACGCGACCTAACAATCTGATACACGTAGCAACCTGCACTT
AGTACTACACACGTGATCGAAGTTAACGGGTACGCA
Found at i:86140193 original size:151 final size:151
Alignment explanation
Indices: 86139927--86140319 Score: 642
Period size: 151 Copynumber: 2.6 Consensus size: 151
86139917 GAAGCTCTCT
* *
86139927 GGTACCCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
86139992 CTGAACTTAGTACTATACACGTGACTTAACCATCTGATACATGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
86140057 CACACGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACG
** * *
86140078 GGTACGCATAGTAGCCTGCACTTAGTACTGTACATGCGACCTATCAATCTGGTACACGTAGCAAC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
86140143 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTATTAGCCTACACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
*
86140208 CACATGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACG
* *
86140229 GGTAGGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* *
86140294 CTGCACTTAGAACTACACAAGTGACT
66 CTGCACTTAGTACTACACACGTGACT
86140320 CACAACAAAT
Statistics
Matches: 222, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
151 222 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
CACACGTGATCGAAGTTAACG
Found at i:86140694 original size:19 final size:20
Alignment explanation
Indices: 86140667--86140713 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
86140657 AAGAACATGT
86140667 TATATTATCAAAATAATCACA
1 TATA-TATCAAAATAATCACA
* *
86140688 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
86140707 TATATAT
1 TATATAT
86140714 ACTTACAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 16 0.70
20 5 0.22
21 2 0.09
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:86143442 original size:31 final size:33
Alignment explanation
Indices: 86143407--86143479 Score: 109
Period size: 32 Copynumber: 2.3 Consensus size: 33
86143397 CGTTTTTAGG
86143407 AATTTTAA-T-GTTTTTATGATCCTTGTAGTTT
1 AATTTTAACTAGTTTTTATGATCCTTGTAGTTT
*
86143438 AA-TTTAACTAGTTTTTGTGATCCTTGTAGTTT
1 AATTTTAACTAGTTTTTATGATCCTTGTAGTTT
86143470 AA-TTTAACTA
1 AATTTTAACTA
86143480 ACTCGGTGTG
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
30 5 0.13
31 3 0.08
32 31 0.79
ACGTcount: A:0.26, C:0.08, G:0.12, T:0.53
Consensus pattern (33 bp):
AATTTTAACTAGTTTTTATGATCCTTGTAGTTT
Found at i:86143452 original size:32 final size:32
Alignment explanation
Indices: 86143416--86143479 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
86143406 GAATTTTAAT
86143416 GTTTTTATGATCCTTGTAGTTTAATTTAACTA
1 GTTTTTATGATCCTTGTAGTTTAATTTAACTA
*
86143448 GTTTTTGTGATCCTTGTAGTTTAATTTAACTA
1 GTTTTTATGATCCTTGTAGTTTAATTTAACTA
86143480 ACTCGGTGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.23, C:0.09, G:0.14, T:0.53
Consensus pattern (32 bp):
GTTTTTATGATCCTTGTAGTTTAATTTAACTA
Found at i:86154373 original size:26 final size:26
Alignment explanation
Indices: 86154343--86154392 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
86154333 CCAATGAACT
*
86154343 GGGGAATCAGCACTTAGCAACCCCTC
1 GGGGAATCAGCACATAGCAACCCCTC
86154369 GGGGAATCAGCACATAGCAACCCC
1 GGGGAATCAGCACATAGCAACCCC
86154393 CTTTCACATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.34, G:0.24, T:0.12
Consensus pattern (26 bp):
GGGGAATCAGCACATAGCAACCCCTC
Found at i:86154404 original size:103 final size:102
Alignment explanation
Indices: 86154207--86154470 Score: 404
Period size: 103 Copynumber: 2.6 Consensus size: 102
86154197 AACCGTTATT
* * * *
86154207 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCC-TCGGGGA
** *
86154272 ATCAGCACATAGCAACCCCCTTTTTATTTCAGAGATAC
65 ATCAGCACATAGCAACCCCCTTTACATTTCAAAGATAC
86154310 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGA
86154374 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 ATCAGCACATAGCAACCCCCTTT-ACATTTCAAAGATAC
* **
86154413 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
86154471 TTATGTACAA
Statistics
Matches: 148, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
102 30 0.20
103 117 0.79
104 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (102 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGAA
TCAGCACATAGCAACCCCCTTTACATTTCAAAGATAC
Found at i:86154832 original size:30 final size:29
Alignment explanation
Indices: 86154798--86154862 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
86154788 TAATCCACCA
86154798 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
86154828 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
86154858 CCCAA
1 CCCAA
86154863 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:86154836 original size:31 final size:30
Alignment explanation
Indices: 86154805--86154862 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
86154795 CCACCCAACT
86154805 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
86154835 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
86154863 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:86161875 original size:103 final size:104
Alignment explanation
Indices: 86161696--86161960 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
86161686 AACCGTTATT
* * * *
86161696 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
86161761 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
86161799 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
86161863 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
86161903 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
86161961 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:86162322 original size:30 final size:29
Alignment explanation
Indices: 86162288--86162352 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
86162278 TAATCCACCA
86162288 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
86162318 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
86162348 CCCAA
1 CCCAA
86162353 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:86162326 original size:31 final size:30
Alignment explanation
Indices: 86162295--86162352 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
86162285 CCACCCAACT
86162295 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
86162325 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
86162353 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:86169759 original size:21 final size:21
Alignment explanation
Indices: 86169718--86169760 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
86169708 GCTGATTTTT
* *
86169718 TTTTTCTTTTTGTTTTGATTC
1 TTTTTCTTTTAGGTTTGATTC
86169739 TTTTTCTTTTCAGGTTT-ATTC
1 TTTTTCTTTT-AGGTTTGATTC
86169760 T
1 T
86169761 GTTAAATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.07, C:0.12, G:0.09, T:0.72
Consensus pattern (21 bp):
TTTTTCTTTTAGGTTTGATTC
Found at i:86175292 original size:26 final size:27
Alignment explanation
Indices: 86175243--86175293 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
86175233 GTTTTGGCGG
* *
86175243 AATCTTTTTACATTTTCTATCCCTCAA
1 AATCATTTTACATTTTCTACCCCTCAA
*
86175270 AATCATTTTAC-TTTTTTACCCCTC
1 AATCATTTTACATTTTCTACCCCTC
86175294 TAATAATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 11 0.52
27 10 0.48
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49
Consensus pattern (27 bp):
AATCATTTTACATTTTCTACCCCTCAA
Found at i:86175350 original size:21 final size:21
Alignment explanation
Indices: 86175326--86175378 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
86175316 TATTAATTAC
*
86175326 AAATATTTAATGATTATA-TTT
1 AAATATTTAAT-AATATAGTTT
86175347 AAATATTTAA-AATATAGTTT
1 AAATATTTAATAATATAGTTT
86175367 AAATATTCTAAT
1 AAATATT-TAAT
86175379 TAAATTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 5 0.18
20 10 0.36
21 13 0.46
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (21 bp):
AAATATTTAATAATATAGTTT
Found at i:86175369 original size:20 final size:20
Alignment explanation
Indices: 86175326--86175373 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
86175316 TATTAATTAC
*
86175326 AAATATTTAATGATTATATTT
1 AAATATTTAA-GAATATATTT
86175347 AAATATTTAA-AATATAGTTT
1 AAATATTTAAGAATATA-TTT
86175367 AAATATT
1 AAATATT
86175374 CTAATTAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 5 0.20
20 10 0.40
21 10 0.40
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (20 bp):
AAATATTTAAGAATATATTT
Found at i:86175440 original size:24 final size:24
Alignment explanation
Indices: 86175384--86175440 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
86175374 CTAATTAAAT
*
86175384 TTTATAAATAATTAACATTTATTA
1 TTTATAAATAATTAAAATTTATTA
* * *
86175408 CTTAAAAATATTTAAAATTTA-TA
1 TTTATAAATAATTAAAATTTATTA
86175431 TTTCATAAAT
1 TTT-ATAAAT
86175441 TAAAATATTA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 4 0.15
24 22 0.85
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (24 bp):
TTTATAAATAATTAAAATTTATTA
Found at i:86179862 original size:222 final size:222
Alignment explanation
Indices: 86179416--86179858 Score: 827
Period size: 222 Copynumber: 2.0 Consensus size: 222
86179406 TATGGCTTTG
*
86179416 TAACACCCCTAACACGTATCCGTCGTCGAAACAGGGTTACAGAGTGTTACCAGTACATACAGAAC
1 TAACACCCCTAACACGTATCCGTCGCCGAAACAGGGTTACAGAGTGTTACCAGTACATACAGAAC
*
86179481 ATTTACAGATTAATCGAAACATTACTATTCACTTTTTGAAATCATATATATATAACGACCTTTAT
66 ATTTACAGATTAATCGAAACATTACTATTCACTTTTTGAAACCATATATATATAACGACCTTTAT
86179546 TTGGGCCCTCGAAGCCCAACATGAAGGTTAAAATCAAGTTGGAGCTCAACTGATTTCTCATAAAA
131 TTGGGCCCTCGAAGCCCAACATGAAGGTTAAAATCAAGTTGGAGCTCAACTGATTTCTCATAAAA
86179611 TTTTTCACTTAATTTTTTAATTTTTTT
196 TTTTTCACTTAATTTTTTAATTTTTTT
* *
86179638 TAACACCCCTAACCCGTATCCTTCGCCGAAACAGGGTTACAGAGTGTTACCAGTACATACAGAAC
1 TAACACCCCTAACACGTATCCGTCGCCGAAACAGGGTTACAGAGTGTTACCAGTACATACAGAAC
86179703 ATTTACAGATTAATCGAAACATTACTATTCACTTTTTGAAACCATATA-A-ATAACGACCTTTAT
66 ATTTACAGATTAATCGAAACATTACTATTCACTTTTTGAAACCATATATATATAACGACCTTTAT
86179766 TTGGGCCCTCGAAGCCCAACATGAAGGTTAAAATCAAGTTGGAGCTCAACTGATTTCTCATAAAA
131 TTGGGCCCTCGAAGCCCAACATGAAGGTTAAAATCAAGTTGGAGCTCAACTGATTTCTCATAAAA
*
86179831 TTTTTCGCTTAATTTTTTAATTTTTTT
196 TTTTTCACTTAATTTTTTAATTTTTTT
86179858 T
1 T
86179859 TTAAATTTTA
Statistics
Matches: 216, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
220 106 0.49
221 1 0.00
222 109 0.50
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (222 bp):
TAACACCCCTAACACGTATCCGTCGCCGAAACAGGGTTACAGAGTGTTACCAGTACATACAGAAC
ATTTACAGATTAATCGAAACATTACTATTCACTTTTTGAAACCATATATATATAACGACCTTTAT
TTGGGCCCTCGAAGCCCAACATGAAGGTTAAAATCAAGTTGGAGCTCAACTGATTTCTCATAAAA
TTTTTCACTTAATTTTTTAATTTTTTT
Found at i:86185085 original size:7 final size:7
Alignment explanation
Indices: 86185075--86185107 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
86185065 TTTGTCCTTT
*
86185075 TATCATT
1 TATCATC
86185082 TATCATC
1 TATCATC
86185089 TATCATC
1 TATCATC
86185096 TATCATC
1 TATCATC
86185103 TATCA
1 TATCA
86185108 CCAAACAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.30, C:0.24, G:0.00, T:0.45
Consensus pattern (7 bp):
TATCATC
Found at i:86185602 original size:30 final size:29
Alignment explanation
Indices: 86185555--86185616 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 29
86185545 ACTTGTTTTA
*
86185555 TTGTTAATTTTTTATTATTTTTGAGGCAT
1 TTGTTAATTTTTTATTATTTTAGAGGCAT
*
86185584 TTGTTAATTTTGTTATTATTTTAGAGGTAT
1 TTGTTAATTTT-TTATTATTTTAGAGGCAT
86185614 TTG
1 TTG
86185617 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 11 0.37
30 19 0.63
ACGTcount: A:0.21, C:0.02, G:0.16, T:0.61
Consensus pattern (29 bp):
TTGTTAATTTTTTATTATTTTAGAGGCAT
Found at i:86185605 original size:29 final size:30
Alignment explanation
Indices: 86185555--86185616 Score: 92
Period size: 29 Copynumber: 2.1 Consensus size: 30
86185545 ACTTGTTTTA
86185555 TTGTTAATTTTTTATTATTTTT-GAGGCAT
1 TTGTTAATTTTTTATTATTTTTAGAGGCAT
*
86185584 TTGTTAATTTTGTTATTA-TTTTAGAGGTAT
1 TTGTTAATTTT-TTATTATTTTTAGAGGCAT
86185614 TTG
1 TTG
86185617 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 15 0.50
30 15 0.50
ACGTcount: A:0.21, C:0.02, G:0.16, T:0.61
Consensus pattern (30 bp):
TTGTTAATTTTTTATTATTTTTAGAGGCAT
Found at i:86188081 original size:56 final size:56
Alignment explanation
Indices: 86188016--86188135 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
86188006 ACAAGGGATG
86188016 ATGGGCAAAACATGTCATGAAACAGGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACAGGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
86188072 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACAGGTTGTGTTAATGGAAAAATAAAATAAGAAGC
86188128 ATGGGCAA
1 ATGGGCAA
86188136 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.45, C:0.09, G:0.24, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACAGGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:86192498 original size:47 final size:47
Alignment explanation
Indices: 86192444--86192798 Score: 613
Period size: 47 Copynumber: 7.6 Consensus size: 47
86192434 TATTTGAATA
86192444 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
86192491 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
86192538 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
86192585 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
86192631 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
86192678 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
86192725 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
86192772 GATGTAAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
86192799 TCCCGAAGGG
Statistics
Matches: 294, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
46 46 0.16
47 248 0.84
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:86192784 original size:187 final size:187
Alignment explanation
Indices: 86192444--86192798 Score: 620
Period size: 187 Copynumber: 1.9 Consensus size: 187
86192434 TATTTGAATA
86192444 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
86192509 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
66 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGG
* * * *
86192574 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCGATGTGATG
131 CCAACGTGATGAATGTAAAAGTGTATAAATGTGATAAGGCCTAATGGCGATGTGATG
86192631 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
86192696 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGG
66 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGG
*
86192761 CCAACGTGATGGATGTAAAAGTGTATAAATGTGATAAG
131 CCAACGTGATGAATGTAAAAGTGTATAAATGTGATAAG
86192799 TCCCGAAGGG
Statistics
Matches: 158, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
187 158 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (187 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGG
CCAACGTGATGAATGTAAAAGTGTATAAATGTGATAAGGCCTAATGGCGATGTGATG
Found at i:86192973 original size:37 final size:37
Alignment explanation
Indices: 86192917--86192995 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
86192907 CCGAGCTCTA
* * *
86192917 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
86192954 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
86192991 AAGAC
1 AAGAC
86192996 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:86194387 original size:73 final size:73
Alignment explanation
Indices: 86194217--86194376 Score: 320
Period size: 73 Copynumber: 2.2 Consensus size: 73
86194207 CAATACAGGG
86194217 ACACACCCGTGTCCTCCACCCGTGTGGAATTAATTCTAAATGCACACCTACAGGGGTTTTTATAC
1 ACACACCCGTGTCCTCCACCCGTGTGGAATTAATTCTAAATGCACACCTACAGGGGTTTTTATAC
86194282 GGCCTGGC
66 GGCCTGGC
86194290 ACACACCCGTGTCCTCCACCCGTGTGGAATTAATTCTAAATGCACACCTACAGGGGTTTTTATAC
1 ACACACCCGTGTCCTCCACCCGTGTGGAATTAATTCTAAATGCACACCTACAGGGGTTTTTATAC
86194355 GGCCTGGC
66 GGCCTGGC
86194363 ACACACCCGTGTCC
1 ACACACCCGTGTCC
86194377 CTGGCCCGTG
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 87 1.00
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (73 bp):
ACACACCCGTGTCCTCCACCCGTGTGGAATTAATTCTAAATGCACACCTACAGGGGTTTTTATAC
GGCCTGGC
Found at i:86195513 original size:46 final size:44
Alignment explanation
Indices: 86195424--86195542 Score: 132
Period size: 46 Copynumber: 2.6 Consensus size: 44
86195414 ACATATTTTT
* *
86195424 GCCGATGCCATGTCCCAAACATGGTCTTACACTGACACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACAGACACATCTCG-AG
* * *
86195470 GCCGATGCATGTCCCAGACATATCTTACACAGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACAGAC--ACATCTCGAG
*
86195516 GCCGATGCATGTCCTAGACATGTCTTA
1 GCCGATGCATGTCCCAGACATGTCTTA
86195543 TACTAGCATT
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
44 10 0.16
45 14 0.22
46 39 0.62
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACAGACACATCTCGAG
Found at i:86195557 original size:46 final size:46
Alignment explanation
Indices: 86195470--86195638 Score: 134
Period size: 46 Copynumber: 3.6 Consensus size: 46
86195460 ACATCTCGTA
* * *
86195470 GCCGATGCATGTCCCAGACATATCTTACACAGGCTTACGTCTCGAG
1 GCCGATGCATGTCCTAGACATGTCTTACACAGGCTTACGTCTCAAG
* *
86195516 GCCGATGCATGTCCTAGACATGTCTTATACTA-GCATT-CGTCTCAAT
1 GCCGATGCATGTCCTAGACATGTCTTACAC-AGGC-TTACGTCTCAAG
** **
86195562 ATCGATGCCATGTCCTAGACATGGTCTTACATTGGC-T-C-TCAT-AATGTG
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACAGGCTTACGTC-TCAA---G
*
86195610 GCCGATGCATGTCCCAGACATGTCTTACA
1 GCCGATGCATGTCCTAGACATGTCTTACA
86195639 GTAGCTCACA
Statistics
Matches: 100, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
45 4 0.04
46 52 0.52
47 30 0.30
48 14 0.14
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCTAGACATGTCTTACACAGGCTTACGTCTCAAG
Found at i:86203886 original size:37 final size:37
Alignment explanation
Indices: 86203844--86203998 Score: 147
Period size: 37 Copynumber: 4.2 Consensus size: 37
86203834 GCCTTATTTT
* * *
86203844 AGTATATCTGTATATCTCGCTCAGTTGAGCTCTC-TTC
1 AGTATATCTGTAGATTTTGCTCAGTTGAGCT-TCATTC
86203881 AGTATATCTGTAGATTTTGCTC-GTTTGAGCTTCATTC
1 AGTATATCTGTAGATTTTGCTCAG-TTGAGCTTCATTC
* * *
86203918 AGTATATCAGTAGATTTTGCTCATTTGAGCTTCATTT
1 AGTATATCTGTAGATTTTGCTCAGTTGAGCTTCATTC
* * * * *
86203955 AATATATCGGTA-AGGTTTGCT-TGTTTGAGCTTCATTT
1 AGTATATCTGTAGA-TTTTGCTCAG-TTGAGCTTCATTC
86203992 AGTATAT
1 AGTATAT
86203999 GATGTCATAT
Statistics
Matches: 101, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
36 4 0.04
37 97 0.96
ACGTcount: A:0.22, C:0.15, G:0.18, T:0.45
Consensus pattern (37 bp):
AGTATATCTGTAGATTTTGCTCAGTTGAGCTTCATTC
Found at i:86203924 original size:74 final size:74
Alignment explanation
Indices: 86203802--86203998 Score: 193
Period size: 74 Copynumber: 2.6 Consensus size: 74
86203792 AGTTCGGTAG
** * * *
86203802 TTCAGTATACTCAGTAGATAATGCTCGATTGAGCCTT-ATTTTAGTATATCTGTATATCTCGCTC
1 TTCAGTATA-TCAGTAGATTTTGCTCGTTTGAG-CTTCA-TTTAGTATATCAGTAGATCTCGCTC
86203866 AGTTGAGCTCTC-
63 AGTTGAGCT-TCA
* * * * *
86203878 TTCAGTATATCTGTAGATTTTGCTCGTTTGAGCTTCATTCAGTATATCAGTAGATTTTGCTCATT
1 TTCAGTATATCAGTAGATTTTGCTCGTTTGAGCTTCATTTAGTATATCAGTAGATCTCGCTCAGT
86203943 TGAGCTTCA
66 TGAGCTTCA
* * * * *
86203952 TTTAATATATCGGTA-AGGTTTGCTTGTTTGAGCTTCATTTAGTATAT
1 TTCAGTATATCAGTAGA-TTTTGCTCGTTTGAGCTTCATTTAGTATAT
86203999 GATGTCATAT
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
73 3 0.03
74 70 0.69
75 20 0.20
76 9 0.09
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.44
Consensus pattern (74 bp):
TTCAGTATATCAGTAGATTTTGCTCGTTTGAGCTTCATTTAGTATATCAGTAGATCTCGCTCAGT
TGAGCTTCA
Found at i:86206013 original size:50 final size:50
Alignment explanation
Indices: 86205896--86206189 Score: 245
Period size: 50 Copynumber: 5.8 Consensus size: 50
86205886 TTCGCCCCTG
* * * * *
86205896 CATGTGTAGTACTATGTGCAAGCTACTATGTGT-TTAAGAAAGTTTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAG--TTAGGTCA
** *
86205948 TGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGTCA
* * * * * * * *
86205998 CATGTGTAGTACTAAGTTCAGGCTATTATGCGTACCT-GACAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTAGA-TAGTTAGGTCA
* * * * *
86206049 CGTATGTAGTACTAAGTGCGGGCTACTACATGTA-TCAGATGGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAGTTAGGTCA
** * *
86206099 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT-GGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGTCA
* * **
86206148 CATGTGTAGTACTAAATGCAGGCTACTATGCATACTAGATAG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAG
86206190 CTTCGGTTAC
Statistics
Matches: 189, Mismatches: 47, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
49 40 0.21
50 79 0.42
51 36 0.19
52 33 0.17
53 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGTCA
Found at i:86206134 original size:101 final size:101
Alignment explanation
Indices: 86205952--86206134 Score: 278
Period size: 101 Copynumber: 1.8 Consensus size: 101
86205942 AGGTCATGTG
* * *
86205952 TGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGTCGCATGTGTAGTACTAAGTTC
1 TGTAGTACTAAGTGCAGGCTACTACATGTACTAGATAGTTAGGTCACATGTGTAGTACTAAGTGC
* *
86206017 AGGCTATTATGCGTACCTGACAACTTCGATCACGTA
66 AGGCTACTACGCGTACCTGACAACTTCGATCACGTA
* *
86206053 TGTAGTACTAAGTGCGGGCTACTACATGTA-TCAGATGGTTAGGTCACATGTGTAGTACTAAGTG
1 TGTAGTACTAAGTGCAGGCTACTACATGTACT-AGATAGTTAGGTCACATGTGTAGTACTAAGTG
*
86206117 CAGGCTACTACGTGTACC
65 CAGGCTACTACGCGTACC
86206135 GGATTGTTGG
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 1 0.01
101 72 0.99
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (101 bp):
TGTAGTACTAAGTGCAGGCTACTACATGTACTAGATAGTTAGGTCACATGTGTAGTACTAAGTGC
AGGCTACTACGCGTACCTGACAACTTCGATCACGTA
Found at i:86208350 original size:25 final size:25
Alignment explanation
Indices: 86208321--86208370 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
86208311 ATGGATCCAC
86208321 CATGCAATGTCGCCAATATAACCAA
1 CATGCAATGTCGCCAATATAACCAA
*
86208346 CATGCAATGTTGCCAATATAACCAA
1 CATGCAATGTCGCCAATATAACCAA
86208371 TTATACATGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.26, G:0.12, T:0.22
Consensus pattern (25 bp):
CATGCAATGTCGCCAATATAACCAA
Found at i:86224673 original size:22 final size:23
Alignment explanation
Indices: 86224621--86224673 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
86224611 TCAACATTAT
* * *
86224621 GGACTAAATCAAACCAAATTACG
1 GGACAAAATCAAACAAAAATACG
*
86224644 GGACAAAATCAAACAAAAATAGG
1 GGACAAAATCAAACAAAAATACG
86224667 GGA-AAAA
1 GGACAAAA
86224674 GTTAAAAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.11
Consensus pattern (23 bp):
GGACAAAATCAAACAAAAATACG
Found at i:86228461 original size:20 final size:20
Alignment explanation
Indices: 86228432--86228470 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
86228422 GTAATAATAA
86228432 TAAATAAAAT-GAAAACAAAT
1 TAAATAAAATAG-AAACAAAT
*
86228452 TAAATGAAATAGAAACAAA
1 TAAATAAAATAGAAACAAA
86228471 GTGGAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.69, C:0.05, G:0.08, T:0.18
Consensus pattern (20 bp):
TAAATAAAATAGAAACAAAT
Found at i:86236858 original size:16 final size:16
Alignment explanation
Indices: 86236837--86236869 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
86236827 TAGCATAAAT
86236837 AACAGT-CTTCTGAGAC
1 AACAGTCCTT-TGAGAC
86236853 AACAGTCCTTTGAGAC
1 AACAGTCCTTTGAGAC
86236869 A
1 A
86236870 TTTCTGCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (16 bp):
AACAGTCCTTTGAGAC
Found at i:86248631 original size:40 final size:40
Alignment explanation
Indices: 86248587--86248786 Score: 258
Period size: 40 Copynumber: 5.0 Consensus size: 40
86248577 AAAATCGAAT
*
86248587 AGATAGAGTATTAGCGGCGTTTTTCAA-AAAGCGCCGCTAA
1 AGATAGAGCATTAGCGGCGTTTTT-AAGAAAGCGCCGCTAA
* **
86248627 AGATAGAGTATTAGCGGCGTTTTTTAAGAAAATGCCGCTAA
1 AGATAGAGCATTAGCGGCG-TTTTTAAGAAAGCGCCGCTAA
* * * * *
86248668 AGATGGAACACTAGTGGCTTTTTTAAGAAAGCGCCGCTAA
1 AGATAGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
* * *
86248708 AGATCGAGAATTAGCGGCGTTTTTAAGAAAGCGCTGCTAA
1 AGATAGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
*
86248748 AGATCGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTA
1 AGATAGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTA
86248787 TAGGCGACGC
Statistics
Matches: 139, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
40 110 0.79
41 29 0.21
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (40 bp):
AGATAGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
Found at i:86249497 original size:16 final size:16
Alignment explanation
Indices: 86249446--86249499 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
86249436 ATGACTTTCT
86249446 CTAAACCC--TAAA-C
1 CTAAACCCTTTAAATC
*
86249459 CTTAACCCTTTAAAT-
1 CTAAACCCTTTAAATC
*
86249474 CAATAACCCTTTAAATC
1 CTA-AACCCTTTAAATC
86249491 CTAAACCCT
1 CTAAACCCT
86249500 AAATCTCTAG
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
13 7 0.22
15 5 0.16
16 18 0.56
17 2 0.06
ACGTcount: A:0.39, C:0.33, G:0.00, T:0.28
Consensus pattern (16 bp):
CTAAACCCTTTAAATC
Found at i:86249705 original size:7 final size:7
Alignment explanation
Indices: 86249695--86249733 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
86249685 GCCTAAATCT
86249695 TAAACCA
1 TAAACCA
86249702 TAAACCA
1 TAAACCA
*
86249709 TAAACCC
1 TAAACCA
86249716 TAAATCCA
1 TAAA-CCA
86249724 -AAACCA
1 TAAACCA
86249730 TAAA
1 TAAA
86249734 ACCTTAAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 3 0.11
7 23 0.82
8 2 0.07
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCA
Found at i:86249719 original size:21 final size:21
Alignment explanation
Indices: 86249695--86249759 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 21
86249685 GCCTAAATCT
86249695 TAAACCATAAACCATAAACCC
1 TAAACCATAAACCATAAACCC
*
86249716 TAAATCCA-AAACCATAAAACCT
1 TAAA-CCATAAACCAT-AAACCC
* *
86249738 TAAACTATAGA-CAGTAAACCC
1 TAAACCATAAACCA-TAAACCC
86249759 T
1 T
86249760 TAAGCACTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
21 21 0.58
22 15 0.42
ACGTcount: A:0.51, C:0.28, G:0.03, T:0.18
Consensus pattern (21 bp):
TAAACCATAAACCATAAACCC
Found at i:86250131 original size:15 final size:15
Alignment explanation
Indices: 86250113--86250144 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
86250103 TAATAATAAC
86250113 AATAAAAGAGAAAAA
1 AATAAAAGAGAAAAA
86250128 AATAAAAGAGAAAAA
1 AATAAAAGAGAAAAA
86250143 AA
1 AA
86250145 AGGAAGGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.06
Consensus pattern (15 bp):
AATAAAAGAGAAAAA
Found at i:86255786 original size:17 final size:18
Alignment explanation
Indices: 86255764--86255797 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
86255754 CAGATTATTA
86255764 AAATTACTAAAA-ATTTG
1 AAATTACTAAAATATTTG
*
86255781 AAATTATTAAAATATTT
1 AAATTACTAAAATATTT
86255798 ACATTAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (18 bp):
AAATTACTAAAATATTTG
Found at i:86260907 original size:17 final size:18
Alignment explanation
Indices: 86260885--86260918 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
86260875 CAGATTATTA
86260885 AAATTACTAAAA-ATTTG
1 AAATTACTAAAATATTTG
*
86260902 AAATTATTAAAATATTT
1 AAATTACTAAAATATTT
86260919 ACATTAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (18 bp):
AAATTACTAAAATATTTG
Found at i:86261830 original size:6 final size:6
Alignment explanation
Indices: 86261800--86261829 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
86261790 AGAACCACCG
*
86261800 TTTCTT TTTCTT TTTCTT TTTCTT CTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
86261830 CCTTTTCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTCTT
Found at i:86263769 original size:29 final size:29
Alignment explanation
Indices: 86263727--86263784 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
86263717 TTTGCACCAC
86263727 ATATTACGTGGAATGCTCGATCAGCATTT
1 ATATTACGTGGAATGCTCGATCAGCATTT
86263756 ATATTACGTGGAATGCTCGATCAGCATTT
1 ATATTACGTGGAATGCTCGATCAGCATTT
86263785 TCTGAGAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (29 bp):
ATATTACGTGGAATGCTCGATCAGCATTT
Found at i:86272162 original size:3 final size:3
Alignment explanation
Indices: 86272154--86272190 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
86272144 AAGAGAGCAA
86272154 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
86272191 GCATCAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:86280994 original size:27 final size:27
Alignment explanation
Indices: 86280952--86281012 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
86280942 CCATGACCGG
86280952 TACCTAAGTCAAAAATTCCTCCATCAT
1 TACCTAAGTCAAAAATTCCTCCATCAT
* * * *
86280979 TATCTAAGTTAGAAATTCTTCCATCAT
1 TACCTAAGTCAAAAATTCCTCCATCAT
86281006 TACCTAA
1 TACCTAA
86281013 ACAAACGCGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (27 bp):
TACCTAAGTCAAAAATTCCTCCATCAT
Found at i:86281166 original size:4 final size:4
Alignment explanation
Indices: 86281153--86281198 Score: 55
Period size: 4 Copynumber: 12.2 Consensus size: 4
86281143 GTATTGTTCA
86281153 CTTT -TTT CTTT CTTT CTTT CTTT CTCTT -TTT C-TT C-TT CTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CT-TT CTTT CTTT CTTT CTTT CTTT
86281198 C
1 C
86281199 CCACTATATA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
3 11 0.29
4 25 0.66
5 2 0.05
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
CTTT
Found at i:86284783 original size:16 final size:17
Alignment explanation
Indices: 86284752--86284784 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
86284742 TTCATAACTA
86284752 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
86284769 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
86284785 GCTACATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:86285132 original size:46 final size:46
Alignment explanation
Indices: 86285065--86285567 Score: 686
Period size: 46 Copynumber: 11.0 Consensus size: 46
86285055 TTATCTTTGA
* * * * *
86285065 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* * *** *
86285111 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ** * ** ***
86285157 TACATTGCCATGGTATCTTTCAAACATGGTCTTATTCA-TTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
86285202 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
86285248 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
86285294 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * *
86285340 CCTGTTGTCATGGTCTCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
86285386 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
86285432 CCTGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
86285478 CATGTTGCCATGGTGTCTTTCAACCATAGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
86285524 CATGTTGCCATGGTGTCTTTCAACCATAGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
86285568 TTTAGAAAGC
Statistics
Matches: 411, Mismatches: 44, Indels: 4
0.90 0.10 0.01
Matches are distributed among these distances:
45 41 0.10
46 370 0.90
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:86292313 original size:88 final size:88
Alignment explanation
Indices: 86292161--86292322 Score: 211
Period size: 88 Copynumber: 1.8 Consensus size: 88
86292151 CGTTTCAATT
* * * ***
86292161 TGCTCCACTACTGCTTAAGGAGATATGAGCTGTAATCTTCAGCCTACTCCACTGTTGTTCAGGGA
1 TGCTCCACTACTGCTTAAGGAGATAAGAGCTGCAATCATCAGCCTACTCCACTACCGTTCAGGGA
86292226 GATAAGGCTCACCGTCTTCGATC
66 GATAAGGCTCACCGTCTTCGATC
* * *
86292249 TGCTCTACTACTGCTT-AGAGAGATAAGATCTGCAATCATCAGCCTGCTCCACTACCGCTT-AGG
1 TGCTCCACTACTGCTTAAG-GAGATAAGAGCTGCAATCATCAGCCTACTCCACTACCG-TTCAGG
86292312 GAGATAAGGCT
64 GAGATAAGGCT
86292323 AGTGGCTTAA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
87 2 0.03
88 59 0.94
89 2 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (88 bp):
TGCTCCACTACTGCTTAAGGAGATAAGAGCTGCAATCATCAGCCTACTCCACTACCGTTCAGGGA
GATAAGGCTCACCGTCTTCGATC
Found at i:86292398 original size:132 final size:132
Alignment explanation
Indices: 86292223--86292804 Score: 681
Period size: 132 Copynumber: 4.4 Consensus size: 132
86292213 TGTTGTTCAG
* * * *
86292223 GGAGATAAGGCTCACCGTCTTCGATCTGCTCTACTACTGCTTAGAGAGATAAGATCTGCAATCAT
1 GGAGATAAGGTTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATCTT
* * * * *
86292288 CAGCCTGCTCCACTACCGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCAGTGCCGCTAT
66 CAGCCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTTAATCTGCTCCATTGCCACTAC
86292353 AT
131 AT
* * *
86292355 GGAGATAAGGTTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT
1 GGAGATAAGGTTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATCTT
** * * *
86292420 CAATCTGCTCCGCTATTGCTTAGGCAGATAAGGCTAGTGGCTTTAATCTGCTCCATTGCCACTAC
66 CAGCCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTTAATCTGCTCCATTGCCACTAC
86292485 AT
131 AT
* * * *
86292487 GGAGATAAGGTTCGCCGTCTTTGGTCTGCTCCACCACTGCTTAG-GAAGATAAGA-CATGTAATC
1 GGAGATAAGGTTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAG-AGATAAGATC-TGCAATC
* * * * *
86292550 TTCAGCATGCTCCGCTATTGCTTAGAGAGATAAGGCTAGTGGCTTTAATCTGCTCCATTGCTGA-
64 TTCAGCCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTTAATCTGCTCCATTGC-CAC
86292614 TACAT
128 TACAT
* * ** * *
86292619 AGAGATAAGATTCGCTATCTTCGATCTACTCCACTACTGCTTA-AGGAGATAAGATTTGCAATCT
1 GGAGATAAGGTTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGA-GAGATAAGATCTGCAATCT
* * * * * *
86292683 TCAGTCT-ATTCAGCTACTGCTT-GGAAAGATAAGGCTAGTGGCTTTAATCTGCTCTATTACCAC
65 TCAGCCTGCTCCA-CTACTGCTTAGG-GAGATAAGGCTAGTGGCTTTAATCTGCTCCATTGCCAC
86292746 TACAT
128 TACAT
* * * * *
86292751 GGAGATAAGATTCGCCGTCTTTGGTCTGCTCCACTACTGCTTAGGGATATAAGA
1 GGAGATAAGGTTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGA
86292805 CTTGTGAATT
Statistics
Matches: 384, Mismatches: 56, Indels: 20
0.83 0.12 0.04
Matches are distributed among these distances:
131 6 0.02
132 376 0.98
133 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (132 bp):
GGAGATAAGGTTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATCTT
CAGCCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTTAATCTGCTCCATTGCCACTAC
AT
Found at i:86292403 original size:44 final size:44
Alignment explanation
Indices: 86292154--86292452 Score: 176
Period size: 44 Copynumber: 6.8 Consensus size: 44
86292144 GAATTTTCGT
* * * * *
86292154 TTCAATTTGCTCCACTACTGCTTAAGGAGAT-ATGAGCTGTAATC
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGGATC-GCAATC
** * ** * * **
86292198 TTCAGCCTACTCCACTGTTG-TTCAGGGAGATAAGGCTCACCGTC
1 TTCAATCTGCTCCACTACTGCTT-AGGGAGATAAGGATCGCAATC
* * *
86292242 TTCGATCTGCTCTACTACTGCTTAGAGAGATAA-GATCTGCAATC
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGGATC-GCAATC
* ** * * * ***
86292286 ATCAGCCTGCTCCACTACCGCTTAGGGAGATAAGGCTAG-TGGC
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGGATCGCAATC
* * * * * * *
86292329 TTAAATCTGCTCCAGTGCCGCTATATGGAGATAAGGTTCGCCATC
1 TTCAATCTGCTCCACTACTGCT-TAGGGAGATAAGGATCGCAATC
* *
86292374 TTCGATCTGCTCCACTACTGCTTAGGGAGATAA-GATCTGTAATC
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGGATC-GCAATC
* * *
86292418 TTCAATCTGCTCCGCTATTGCTTAGGCAGATAAGG
1 TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGG
86292453 CTAGTGGCTT
Statistics
Matches: 183, Mismatches: 63, Indels: 17
0.70 0.24 0.06
Matches are distributed among these distances:
43 25 0.14
44 132 0.72
45 26 0.14
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (44 bp):
TTCAATCTGCTCCACTACTGCTTAGGGAGATAAGGATCGCAATC
Found at i:86292715 original size:264 final size:263
Alignment explanation
Indices: 86292223--86292806 Score: 794
Period size: 264 Copynumber: 2.2 Consensus size: 263
86292213 TGTTGTTCAG
* * * * *
86292223 GGAGATAAGGCTCACCGTCTTCGATCTGCTCTACTACTGCTTA-GAGAGATAAGATCTGCAATCA
1 GGAGATAAGGTTCGCCGTCTTTGGTCTGCTCCACTACTGCTTAGGA-AGATAAGA-CTGCAATCA
* * *
86292287 TCAGCCTGCTCCACTACCGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCAGTGCCGCTA
64 TCAGCATGCTCCACTACCGCTTAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCAGTGCCGATA
* * * * * *
86292352 TATGGAGATAAGGTTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT
129 CATAGAGATAAGATTCGCCATCTTCGATCTACTCCACTACTGCTTAAGGAGATAAGATCTGCAAT
* * * * *
86292417 CTTCAATCTGCTCCGCTATTGCTTAGGCAGATAAGGCTAGTGGCTTTAATCTGCTCCATTGCCAC
194 CTTCAATCTACTCAGCTACTGCTTAGGAAGATAAGGCTAGTGGCTTTAATCTGCTCCATTACCAC
86292482 TACAT
259 TACAT
* * *
86292487 GGAGATAAGGTTCGCCGTCTTTGGTCTGCTCCACCACTGCTTAGGAAGATAAGACATGTAATCTT
1 GGAGATAAGGTTCGCCGTCTTTGGTCTGCTCCACTACTGCTTAGGAAGATAAGAC-TGCAATCAT
* ** * * *
86292552 CAGCATGCTCCGCTATTGCTTAGAGAGATAAGGCTAGTGGCTTTAATCTGCTCCATTGCTGATAC
65 CAGCATGCTCCACTACCGCTTAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCAGTGCCGATAC
* *
86292617 ATAGAGATAAGATTCGCTATCTTCGATCTACTCCACTACTGCTTAAGGAGATAAGATTTGCAATC
130 ATAGAGATAAGATTCGCCATCTTCGATCTACTCCACTACTGCTTAAGGAGATAAGATCTGCAATC
* * *
86292682 TTCAGTCTATTCAGCTACTGCTT-GGAAAGATAAGGCTAGTGGCTTTAATCTGCTCTATTACCAC
195 TTCAATCTACTCAGCTACTGCTTAGG-AAGATAAGGCTAGTGGCTTTAATCTGCTCCATTACCAC
86292746 TACAT
259 TACAT
* * *
86292751 GGAGATAAGATTCGCCGTCTTTGGTCTGCTCCACTACTGCTTAGGGATATAAGACT
1 GGAGATAAGGTTCGCCGTCTTTGGTCTGCTCCACTACTGCTTAGGAAGATAAGACT
86292807 TGTGAATTCA
Statistics
Matches: 280, Mismatches: 37, Indels: 7
0.86 0.11 0.02
Matches are distributed among these distances:
263 4 0.01
264 274 0.98
265 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (263 bp):
GGAGATAAGGTTCGCCGTCTTTGGTCTGCTCCACTACTGCTTAGGAAGATAAGACTGCAATCATC
AGCATGCTCCACTACCGCTTAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCAGTGCCGATACA
TAGAGATAAGATTCGCCATCTTCGATCTACTCCACTACTGCTTAAGGAGATAAGATCTGCAATCT
TCAATCTACTCAGCTACTGCTTAGGAAGATAAGGCTAGTGGCTTTAATCTGCTCCATTACCACTA
CAT
Found at i:86302934 original size:19 final size:20
Alignment explanation
Indices: 86302897--86302934 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
86302887 TTATTTTGCG
*
86302897 TCACACTAATGCTGGTGTAA
1 TCACACTAATGCTGATGTAA
*
86302917 TCACA-TAATTCTGATGTA
1 TCACACTAATGCTGATGTA
86302935 TACCCCTCGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (20 bp):
TCACACTAATGCTGATGTAA
Found at i:86311127 original size:14 final size:14
Alignment explanation
Indices: 86311091--86311170 Score: 58
Period size: 14 Copynumber: 5.7 Consensus size: 14
86311081 TTAAAAGTTA
* *
86311091 AAACCCTAAAATAT
1 AAACCCTAAACTCT
** *
86311105 AAAATCTAAACTCG
1 AAACCCTAAACTCT
86311119 AAACCCTAAA-TCTT
1 AAACCCTAAACTC-T
86311133 AAACCC-AAGACTCT
1 AAACCCTAA-ACTCT
86311147 AAACCCTTAAACTC-
1 AAACCC-TAAACTCT
*
86311161 AAGCCCTAAA
1 AAACCCTAAA
86311171 TATGAGAGTT
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
13 8 0.15
14 36 0.69
15 6 0.12
16 2 0.04
ACGTcount: A:0.47, C:0.29, G:0.04, T:0.20
Consensus pattern (14 bp):
AAACCCTAAACTCT
Found at i:86326047 original size:25 final size:26
Alignment explanation
Indices: 86326015--86326069 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
86326005 TTATTAAATT
*
86326015 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
86326040 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
86326065 A-ATAT
1 ATATAT
86326070 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:86326256 original size:44 final size:45
Alignment explanation
Indices: 86326207--86326301 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
86326197 TTACACCTCT
* *
86326207 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
86326251 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
86326296 ATTACA
1 ATTACA
86326302 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:86326301 original size:16 final size:16
Alignment explanation
Indices: 86326282--86326333 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
86326272 GATTTGCTAT
* *
86326282 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
86326298 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
86326314 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
86326330 TACA
1 TACA
86326334 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:86329199 original size:25 final size:25
Alignment explanation
Indices: 86329152--86329310 Score: 101
Period size: 25 Copynumber: 6.4 Consensus size: 25
86329142 AACATCTCGT
** *
86329152 TATATGGCTCTCACAAGCCTCCCGA
1 TATATGGCTCTCATGAGCTTCCCGA
* *
86329177 TATCTGGCTCTCATGAGCTTCCCTA
1 TATATGGCTCTCATGAGCTTCCCGA
*
86329202 T-TAATGGCTCTCTTGAGCTTCCCG-
1 TAT-ATGGCTCTCATGAGCTTCCCGA
* *
86329226 TTTATGGCTCGT-ATGAGCTTCCTGA
1 TATATGGCTC-TCATGAGCTTCCCGA
* ** * * *
86329251 TATTTGGCTAGCAAGAGTTTCCCGT
1 TATATGGCTCTCATGAGCTTCCCGA
* ** *
86329276 TATATAGCT-TGCATGAGCTTCTTGT
1 TATATGGCTCT-CATGAGCTTCCCGA
86329301 TATATGGCTC
1 TATATGGCTC
86329311 GGAAGAGCTC
Statistics
Matches: 101, Mismatches: 26, Indels: 13
0.72 0.19 0.09
Matches are distributed among these distances:
24 19 0.19
25 82 0.81
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (25 bp):
TATATGGCTCTCATGAGCTTCCCGA
Found at i:86329317 original size:50 final size:49
Alignment explanation
Indices: 86329216--86329328 Score: 127
Period size: 50 Copynumber: 2.3 Consensus size: 49
86329206 TGGCTCTCTT
* * *
86329216 GAGCTTCCCGTTTATGGCTCGTATGAGCTTCCTGATATTTGGCTAGCAA
1 GAGCTTCCCGTTTATAGCTCGCATGAGCTTCCTGATATATGGCTAGCAA
* * * * * *
86329265 GAGTTTCCCGTTATATAGCTTGCATGAGCTTCTTGTTATATGGCTCGGAA
1 GAGCTTCCCGTT-TATAGCTCGCATGAGCTTCCTGATATATGGCTAGCAA
*
86329315 GAGCTCCCCGTTTA
1 GAGCTTCCCGTTTA
86329329 CATGCTTATA
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
49 13 0.25
50 39 0.75
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (49 bp):
GAGCTTCCCGTTTATAGCTCGCATGAGCTTCCTGATATATGGCTAGCAA
Found at i:86332212 original size:52 final size:52
Alignment explanation
Indices: 86332143--86332246 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
86332133 CCAGACATGG
86332143 TCTTACACTCTCTCACATATCAGTGCTGATGCAATGTCCCACACATGGTCTT
1 TCTTACACTCTCTCACATATCAGTGCTGATGCAATGTCCCACACATGGTCTT
86332195 TCTTACACTCTCTCACATATCAGTGCTGATGCAATGTCCCACACATGGTCTT
1 TCTTACACTCTCTCACATATCAGTGCTGATGCAATGTCCCACACATGGTCTT
86332247 ACACTGACAC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.23, C:0.31, G:0.13, T:0.33
Consensus pattern (52 bp):
TCTTACACTCTCTCACATATCAGTGCTGATGCAATGTCCCACACATGGTCTT
Found at i:86332519 original size:9 final size:9
Alignment explanation
Indices: 86332505--86332572 Score: 57
Period size: 9 Copynumber: 7.6 Consensus size: 9
86332495 ATAAGTATAA
86332505 AATTAACCG
1 AATTAACCG
*
86332514 AATTAACTG
1 AATTAACCG
* *
86332523 TATTAATCG
1 AATTAACCG
*
86332532 AATTAACAG
1 AATTAACCG
*
86332541 AATT-ACCTA
1 AATTAACC-G
* *
86332550 AATTACCCA
1 AATTAACCG
86332559 AATTAACCG
1 AATTAACCG
86332568 AATTA
1 AATTA
86332573 TTTGTATAAA
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
8 2 0.04
9 41 0.91
10 2 0.04
ACGTcount: A:0.46, C:0.18, G:0.07, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:86332535 original size:27 final size:27
Alignment explanation
Indices: 86332504--86332572 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
86332494 AATAAGTATA
** *
86332504 AAATTAACCGAATTAACTGTATTAATC
1 AAATTAACCGAATTAACTAAATTAACC
* * * *
86332531 GAATTAACAGAATTACCTAAATTACCC
1 AAATTAACCGAATTAACTAAATTAACC
86332558 AAATTAACCGAATTA
1 AAATTAACCGAATTA
86332573 TTTGTATAAA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (27 bp):
AAATTAACCGAATTAACTAAATTAACC
Found at i:86332603 original size:6 final size:6
Alignment explanation
Indices: 86332592--86332638 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
86332582 AATTATATGT
* *
86332592 TTTTTA TTTTTA TTTTTA GTTTTA GTTTTAAA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
86332639 ATTAAATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
6 27 0.77
7 7 0.20
8 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:86332626 original size:20 final size:21
Alignment explanation
Indices: 86332603--86332646 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
86332593 TTTTATTTTT
86332603 ATTTTTAGTTTTAGTT-TTAA
1 ATTTTTAGTTTTAGTTATTAA
* *
86332623 ATTTTTATTTTTATTTATTAA
1 ATTTTTAGTTTTAGTTATTAA
86332644 ATT
1 ATT
86332647 ATTTGTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (21 bp):
ATTTTTAGTTTTAGTTATTAA
Found at i:86332679 original size:13 final size:13
Alignment explanation
Indices: 86332663--86332706 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
86332653 AATTTTTATG
86332663 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
86332676 ATTGGGTTGGG--
1 ATTGGGTTGGGTA
86332687 -TTGGGTTGGGTA
1 ATTGGGTTGGGTA
*
86332699 CTTGGGTT
1 ATTGGGTT
86332707 AATATATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 10 0.36
13 18 0.64
ACGTcount: A:0.09, C:0.02, G:0.48, T:0.41
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:86345861 original size:89 final size:87
Alignment explanation
Indices: 86345762--86345934 Score: 310
Period size: 89 Copynumber: 2.0 Consensus size: 87
86345752 CATCCTTGTG
86345762 TATGCCATATCATTAATTAATGAATTTTTAAATATACAAAAAAATATTTAATTTTTATAAATTTT
1 TATGCCATATCATTAATTAATGAATTTTTAAATATA-AAAAAAATATTTAATTTTTATAAATTTT
*
86345827 AATTTTTTTTAAAATTGTTTTTAT
65 AA-TTTTTTTAAAATTATTTTTAT
*
86345851 TATGCCATATCATTAATTAATGAATTTTTAAATATATAAAAAATATTTAATTTTTATAAATTTTA
1 TATGCCATATCATTAATTAATGAATTTTTAAATATAAAAAAAATATTTAATTTTTATAAATTTTA
86345916 ATTTTTTTAAAATTATTTT
66 ATTTTTTTAAAATTATTTT
86345935 AAATTTTAAA
Statistics
Matches: 82, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
87 17 0.21
88 29 0.35
89 36 0.44
ACGTcount: A:0.41, C:0.04, G:0.03, T:0.52
Consensus pattern (87 bp):
TATGCCATATCATTAATTAATGAATTTTTAAATATAAAAAAAATATTTAATTTTTATAAATTTTA
ATTTTTTTAAAATTATTTTTAT
Found at i:86345917 original size:16 final size:17
Alignment explanation
Indices: 86345891--86345926 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
86345881 AATATATAAA
86345891 AAATATTTAATTTTTAT
1 AAATATTTAATTTTTAT
*
86345908 AAAT-TTTAATTTTTTT
1 AAATATTTAATTTTTAT
86345924 AAA
1 AAA
86345927 ATTATTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
AAATATTTAATTTTTAT
Found at i:86345955 original size:89 final size:89
Alignment explanation
Indices: 86345773--86345955 Score: 244
Period size: 88 Copynumber: 2.1 Consensus size: 89
86345763 ATGCCATATC
86345773 ATTAATTAATGAATTTTTAAATATACAAAAAAATATTTAATTTTTATAAATTTTAATTTTTTTTA
1 ATTAATTAATGAATTTTTAAATATACAAAAAAATATTTAATTTTTATAAATTTTAATTTTTTTTA
* * *** * **
86345838 AAATTGTTTTTATTATGCCATATC
66 AAATTATTTTAATTATAAAAAAAA
*
86345862 ATTAATTAATGAATTTTTAAATATA-TAAAAAATATTTAATTTTTATAAATTTTAA-TTTTTTTA
1 ATTAATTAATGAATTTTTAAATATACAAAAAAATATTTAATTTTTATAAATTTTAATTTTTTTTA
*
86345925 AAATTATTTTAAATTTTAAAAAAAAA
66 AAATTATTTT-AATTAT-AAAAAAAA
86345951 ATTAA
1 ATTAA
86345956 AAAATAATTA
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
87 17 0.21
88 33 0.40
89 32 0.39
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (89 bp):
ATTAATTAATGAATTTTTAAATATACAAAAAAATATTTAATTTTTATAAATTTTAATTTTTTTTA
AAATTATTTTAATTATAAAAAAAA
Found at i:86347439 original size:24 final size:24
Alignment explanation
Indices: 86347391--86347439 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
86347381 TGCCTTTGTA
**
86347391 AGTAGTTGTAGATATGGGAACTCT
1 AGTAGTTGTAGATATGAAAACTCT
* *
86347415 AGTAGTTGTATATATGAAAATTCT
1 AGTAGTTGTAGATATGAAAACTCT
86347439 A
1 A
86347440 CTGTTCAGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.37
Consensus pattern (24 bp):
AGTAGTTGTAGATATGAAAACTCT
Found at i:86350710 original size:55 final size:55
Alignment explanation
Indices: 86350650--86350757 Score: 198
Period size: 55 Copynumber: 2.0 Consensus size: 55
86350640 AAGAATGAAG
*
86350650 TTTTGGATTGTGCTTTTTGGAATATAGCAATCTTATAAAACACTGTTATGAAGAA
1 TTTTGGATTGTGCTTTATGGAATATAGCAATCTTATAAAACACTGTTATGAAGAA
*
86350705 TTTTGGATTGTGCTTTATGGAATATAGCATTCTTATAAAACACTGTTATGAAG
1 TTTTGGATTGTGCTTTATGGAATATAGCAATCTTATAAAACACTGTTATGAAG
86350758 TTTATTTTAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (55 bp):
TTTTGGATTGTGCTTTATGGAATATAGCAATCTTATAAAACACTGTTATGAAGAA
Found at i:86355048 original size:21 final size:20
Alignment explanation
Indices: 86355015--86355058 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
86355005 CTATTTGTAT
**
86355015 ATTATTAAAATTTTTAATTA
1 ATTATTAAAATTTAAAATTA
*
86355035 ATTATGTATAATTTAAAATTA
1 ATTAT-TAAAATTTAAAATTA
86355056 ATT
1 ATT
86355059 TATATTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
ATTATTAAAATTTAAAATTA
Found at i:86357401 original size:16 final size:16
Alignment explanation
Indices: 86357380--86357413 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
86357370 TACATAGTAT
*
86357380 TTTTAAAATTATTTTA
1 TTTTAAAATTATTATA
*
86357396 TTTTAATATTATTATA
1 TTTTAAAATTATTATA
86357412 TT
1 TT
86357414 ATGTTTAGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTTAAAATTATTATA
Found at i:86357444 original size:3 final size:3
Alignment explanation
Indices: 86357438--86357669 Score: 103
Period size: 3 Copynumber: 76.0 Consensus size: 3
86357428 TGAATTTCTA
* * * *
86357438 TAT TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT TAC TGT TAT GTACA
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TA-T
* * *
86357486 TAT TAT T-T ATAC TA- TACT TAA TAT TAT TAT TAT CAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
86357531 TAT TA- TATT TAC TAT TAT TATT TAT AAA TAT TAGT GTA- TAT T-T TAT
1 TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TA-T -TAT TAT TAT TAT
* *
86357577 T-T TAA TAT CAT TA- TAT TAT GT-T TACT T-T T-T TGAAT T-T CTA-
1 TAT TAT TAT TAT TAT TAT TAT -TAT TA-T TAT TAT T--AT TAT -TAT
*
86357617 TAT TAT TAT TAT TAT TAT TGT TACT TAT TAT TAT TACT GT-T TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TA-T -TAT TAT TAT
86357664 TAT TAT
1 TAT TAT
86357670 GTATATATTT
Statistics
Matches: 175, Mismatches: 25, Indels: 58
0.68 0.10 0.22
Matches are distributed among these distances:
2 22 0.13
3 126 0.72
4 22 0.13
5 5 0.03
ACGTcount: A:0.31, C:0.05, G:0.04, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:86357646 original size:19 final size:19
Alignment explanation
Indices: 86357619--86357669 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
86357609 AATTTCTATA
*
86357619 TTATTATTATTATTATTG-
1 TTATTATTATTATTACTGT
86357637 TTACTTATTATTATTACTGT
1 TTA-TTATTATTATTACTGT
86357657 TTATTATTATTAT
1 TTATTATTATTAT
86357670 GTATATATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 3 0.10
19 24 0.80
20 3 0.10
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.65
Consensus pattern (19 bp):
TTATTATTATTATTACTGT
Found at i:86372705 original size:104 final size:104
Alignment explanation
Indices: 86372583--86372806 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
86372573 AATGGATATC
86372583 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
86372648 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
86372687 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
86372752 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
86372791 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
86372807 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:86373168 original size:29 final size:29
Alignment explanation
Indices: 86373135--86373198 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
86373125 TAATCCACCA
86373135 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
86373164 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
86373194 CCCAA
1 CCCAA
86373199 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:86373172 original size:30 final size:30
Alignment explanation
Indices: 86373142--86373198 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
86373132 CCACCCAACT
86373142 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
86373171 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
86373199 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:86381386 original size:16 final size:16
Alignment explanation
Indices: 86381365--86381399 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
86381355 AATAGTATTC
86381365 CTTTCCTTCTTTTGTT
1 CTTTCCTTCTTTTGTT
86381381 CTTTCCTTCTTTTGTT
1 CTTTCCTTCTTTTGTT
86381397 CTT
1 CTT
86381400 CTTCTTCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.00, C:0.26, G:0.06, T:0.69
Consensus pattern (16 bp):
CTTTCCTTCTTTTGTT
Found at i:86387142 original size:28 final size:28
Alignment explanation
Indices: 86387065--86387149 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 28
86387055 ATTATGAAAG
*
86387065 ATGTAAAAGTCCGTCAAGACTATCTTAT
1 ATGTGAAAGTCCGTCAAGACTATCTTAT
* * * **
86387093 ATATGGAAGTCCATCGGGACTATCTTAT
1 ATGTGAAAGTCCGTCAAGACTATCTTAT
* *
86387121 ATGTGAAAGTGCGTCAAAACTATCTTAT
1 ATGTGAAAGTCCGTCAAGACTATCTTAT
86387149 A
1 A
86387150 AGTGGAAATC
Statistics
Matches: 44, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (28 bp):
ATGTGAAAGTCCGTCAAGACTATCTTAT
Found at i:86387796 original size:69 final size:69
Alignment explanation
Indices: 86387685--86387823 Score: 251
Period size: 69 Copynumber: 2.0 Consensus size: 69
86387675 ATTATAGTAC
* *
86387685 AATTTAGAATAACCAGAACATTTGATTTCAAATAGAAAATTTATTCAATTGAAATTATAACAATC
1 AATTTAGAATAACCAGAACATTTGATTTCAAATAGAAAATTTATTCAATTGAAATTATAAAAATA
86387750 ATTT
66 ATTT
*
86387754 AATTTAGAATAATCAGAACATTTGATTTCAAATAGAAAATTTATTCAATTGAAATTATAAAAATA
1 AATTTAGAATAACCAGAACATTTGATTTCAAATAGAAAATTTATTCAATTGAAATTATAAAAATA
86387819 ATTT
66 ATTT
86387823 A
1 A
86387824 CACATTCCAT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.48, C:0.08, G:0.07, T:0.37
Consensus pattern (69 bp):
AATTTAGAATAACCAGAACATTTGATTTCAAATAGAAAATTTATTCAATTGAAATTATAAAAATA
ATTT
Found at i:86389446 original size:24 final size:24
Alignment explanation
Indices: 86389414--86389461 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
86389404 AGATACCGAC
**
86389414 CTTTTCATTGTTATCCTTTTCGAA
1 CTTTTCATTGACATCCTTTTCGAA
*
86389438 CTTTTCATTGACATCTTTTTCGAA
1 CTTTTCATTGACATCCTTTTCGAA
86389462 TAACATCCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.19, C:0.21, G:0.08, T:0.52
Consensus pattern (24 bp):
CTTTTCATTGACATCCTTTTCGAA
Found at i:86389506 original size:41 final size:40
Alignment explanation
Indices: 86389426--86389530 Score: 156
Period size: 41 Copynumber: 2.6 Consensus size: 40
86389416 TTTCATTGTT
* *
86389426 ATCCTTTTCGAACTTTTCATTGACATCTTTTTCGAATAAC
1 ATCCTTTTCAAACTTTTCATTGATATCTTTTTCGAATAAC
* *
86389466 ATCCTTTTCAAAATTTTCACTTGATATCTTTTTCGGATAAC
1 ATCCTTTTCAAACTTTTCA-TTGATATCTTTTTCGAATAAC
*
86389507 ATCCTTTTCAACCTTTTCATTGAT
1 ATCCTTTTCAAACTTTTCATTGAT
86389531 TAAAAAATAC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 22 0.38
41 36 0.62
ACGTcount: A:0.25, C:0.22, G:0.07, T:0.47
Consensus pattern (40 bp):
ATCCTTTTCAAACTTTTCATTGATATCTTTTTCGAATAAC
Found at i:86399357 original size:10 final size:9
Alignment explanation
Indices: 86399325--86399368 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
86399315 ACAATCAAAA
86399325 TGAGAGAGT
1 TGAGAGAGT
* *
86399334 TAAGAGACT
1 TGAGAGAGT
*
86399343 TGAGAGGGTT
1 TGAGAGAG-T
86399353 TGAGAGAGT
1 TGAGAGAGT
86399362 TGAGAGA
1 TGAGAGA
86399369 AAGACGTGAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
9 20 0.71
10 8 0.29
ACGTcount: A:0.34, C:0.02, G:0.41, T:0.23
Consensus pattern (9 bp):
TGAGAGAGT
Found at i:86411397 original size:93 final size:93
Alignment explanation
Indices: 86411285--86411456 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
86411275 GCCCATAAGT
*
86411285 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
86411350 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
86411378 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
86411443 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
86411457 CAAACATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:86411452 original size:46 final size:46
Alignment explanation
Indices: 86411277--86411452 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
86411267 TGTAACCCGC
* *
86411277 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* * *
86411323 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
86411373 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
86411416 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
86411453 TGCCCAAACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 64 0.58
47 27 0.25
49 1 0.01
50 7 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:86415826 original size:3 final size:3
Alignment explanation
Indices: 86415820--86415859 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
86415810 AGGAAAAGTA
* *
86415820 AAT AAT AAT AAT AAT AAT AAT GAT AAT AAT AAG AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
86415860 TGAACAACAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:86415978 original size:12 final size:12
Alignment explanation
Indices: 86415934--86415981 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
86415924 AAGAGATAAT
* *
86415934 AAATAGATAAAT
1 AAATATATAAAA
*
86415946 AAATAAATAAAA
1 AAATATATAAAA
*
86415958 TAATATATAAAA
1 AAATATATAAAA
*
86415970 AAATCTATAAAA
1 AAATATATAAAA
86415982 GGGTCGAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (12 bp):
AAATATATAAAA
Found at i:86419781 original size:70 final size:70
Alignment explanation
Indices: 86419666--86420716 Score: 673
Period size: 70 Copynumber: 15.1 Consensus size: 70
86419656 ATGATCCCTC
* * * * *
86419666 CCAAAAAAGTTAGCGCGAGTTCAAGCTTCCC-GCT-ATAATCTTAAGGCTCGTAGATTCAATATA
1 CCAAAATAGTTAGCGTGAGCTCAAGC-TCCCAGCTGA-AATCTTAAGGCTCGTAGGTTCAATATC
86419729 GCAGCCT
64 GCAGCCT
* * * * * * * * *** * * * *
86419736 TCAAAACAATTAACGCGAGCTCAAGCTCCTAGCTAAAATATTAAGGCTTACAGGTTTAGTACCAC
1 CCAAAATAGTTAGCGTGAGCTCAAGCTCCCAGCTGAAATCTTAAGGCTCGTAGGTTCAATATCGC
86419801 AGCCT
66 AGCCT
* * * *
86419806 CCAAAATAGTTAGCGTGAGCTCAAGCTCCCAGCTAAAATATTAAGGCTCGCAGGTTCAA-AACTG
1 CCAAAATAGTTAGCGTGAGCTCAAGCTCCCAGCTGAAATCTTAAGGCTCGTAGGTTCAATATC-G
86419870 CAGCCT
65 CAGCCT
* * **
86419876 CCAAAATAGTTAG-GTCGAGCTCAAGCTCCCAGCT-AGAATCTTAAGGCTTGTAGGTTGAATGCC
1 CCAAAATAGTTAGCGT-GAGCTCAAGCTCCCAGCTGA-AATCTTAAGGCTCGTAGGTTCAATATC
86419939 GCAGCCT
64 GCAGCCT
* * * * ** * * *
86419946 CCAAAATATTTAGCTTGAGCTTAATCT-CCAAATTATAATATTAAGGCTCATAGGTTCAATA-CT
1 CCAAAATAGTTAGCGTGAGCTCAAGCTCCCAGCTGA-AATCTTAAGGCTCGTAGGTTCAATATC-
86420009 GCAG-CT
64 GCAGCCT
* * * * * * * *
86420015 CCTAAAATAGTTAACGCGAGCTTAAGCTCCCAACTGAAATCTTAAGGCTTGTAGGGTCAATGTCC
1 CC-AAAATAGTTAGCGTGAGCTCAAGCTCCCAGCTGAAATCTTAAGGCTCGTAGGTTCAATATCG
86420080 CAGCCT
65 CAGCCT
* * * * * ** * ** * *
86420086 CAAAAAAAGTTAGCATGAGATCAAGTTCCCATTTGAAATATTAAGGCTCACAAGTTCAATACCGC
1 CCAAAATAGTTAGCGTGAGCTCAAGCTCCCAGCTGAAATCTTAAGGCTCGTAGGTTCAATATCGC
*
86420151 AACCT
66 AGCCT
* ** * ** * * * * *
86420156 TCAAAATAGTTAATGCGAGCTCAAGCTCTTAACTGAAGTCTTAAGGCTCGCAGGTTCAATACCGT
1 CCAAAATAGTTAGCGTGAGCTCAAGCTCCCAGCTGAAATCTTAAGGCTCGTAGGTTCAATATCGC
*
86420221 AGCTT
66 AGCCT
* * * * * * * ** *
86420226 CTAAAACT-GTTAGTGTGAGTTTAAGATCCTATCTTTAATCTTAAGGCTCGTAGATTCAATATCG
1 CCAAAA-TAGTTAGCGTGAGCTCAAGCTCCCAGCTGAAATCTTAAGGCTCGTAGGTTCAATATCG
*
86420290 CAACCT
65 CAGCCT
* * * *
86420296 CCAAAATAGTTAGCGTGAGCTCAAGCTCCAAGCTTG-AATCTTAAGGCTTGTAGGTTTAATGTCG
1 CCAAAATAGTTAGCGTGAGCTCAAGCTCCCAGC-TGAAATCTTAAGGCTCGTAGGTTCAATATCG
*
86420360 TAGCCT
65 CAGCCT
* * * * *
86420366 TCAAAACAGTTAGCTTGAGCTCAAGCTCCTAGCTGAAATCTTAAGGTTCGTAGGTTCAATATCGC
1 CCAAAATAGTTAGCGTGAGCTCAAGCTCCCAGCTGAAATCTTAAGGCTCGTAGGTTCAATATCGC
86420431 AGCCT
66 AGCCT
* * * * * * * * * * *
86420436 CTAAAACT-GTTAGTGTGAGTTTAAGATTCCAACTGTAAT-ATAAGGGATCGTAGATTCAATATC
1 CCAAAA-TAGTTAGCGTGAGCTCAAGCTCCCAGCTGAAATCTTAA-GGCTCGTAGGTTCAATATC
*
86420499 GCAACCT
64 GCAGCCT
* * * * * *
86420506 CCAAAACAATTAGCGTGA---CAAGCTCCAAACTTG-AATC-TAAGGCTTGTAGGTTCAATGTCG
1 CCAAAATAGTTAGCGTGAGCTCAAGCTCCCAGC-TGAAATCTTAAGGCTCGTAGGTTCAATATCG
86420566 CAGCCT
65 CAGCCT
* * * * *
86420572 CCAAAACAGTTAGCGTGAGCTTAAGCTCCCAGCTGAAATCTTAAGGCTTGCAGG-TCTAGTA-CT
1 CCAAAATAGTTAGCGTGAGCTCAAGCTCCCAGCTGAAATCTTAAGGCTCGTAGGTTC-AATATC-
* *
86420635 ACAACCT
64 GCAGCCT
* * * ** ** * * ** * *
86420642 TCAAAATAATTAACACGAGCTCAAGCTCTTAGCTGTAATATTAAGGCTCACAAGTTCATTATCGC
1 CCAAAATAGTTAGCGTGAGCTCAAGCTCCCAGCTGAAATCTTAAGGCTCGTAGGTTCAATATCGC
86420707 AGCCT
66 AGCCT
86420712 CCAAA
1 CCAAA
86420717 GCAGTTAATG
Statistics
Matches: 754, Mismatches: 196, Indels: 62
0.75 0.19 0.06
Matches are distributed among these distances:
66 38 0.05
67 14 0.02
68 4 0.01
69 39 0.05
70 641 0.85
71 18 0.02
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.27
Consensus pattern (70 bp):
CCAAAATAGTTAGCGTGAGCTCAAGCTCCCAGCTGAAATCTTAAGGCTCGTAGGTTCAATATCGC
AGCCT
Found at i:86420682 original size:206 final size:209
Alignment explanation
Indices: 86420273--86420666 Score: 489
Period size: 206 Copynumber: 1.9 Consensus size: 209
86420263 ATCTTAAGGC
* * *
86420273 TCGTAGATTCAATATCGCAACCTCCAAAATAGTTAGCGTGAGCTCAAGCTCCAAGCTTGAATCTT
1 TCGTAGATTCAATATCGCAACCTCCAAAACAATTAGCGTGA-C-CAAGCTCCAAACTTGAATCTT
* * * * *
86420338 AAGGCTTGTAGGTTTAATGTCGTAGCCTTCAAAACAGTTAGCTTGAGCTCAAGCTCCTAGCTGAA
64 AAGGCTTGTAGGTTCAATGTCGCAGCCTCCAAAACAGTTAGCGTGAGCTCAAGCTCCCAGCTGAA
* * * * **** * *
86420403 ATCTTAAGGTTCGTAGGTTCAATATCGCAGCCTCTAAAACTGTTAGTGTGAGTTTAAGATTCCAA
129 ATCTTAAGGTTCGCAGGTTCAATATCACAACCTCTAAAACTATTAACACGAGCTCAAGATTCCAA
86420468 CTGTAATA-TAAGGGA
194 CTGTAATATTAAGGGA
86420483 TCGTAGATTCAATATCGCAACCTCCAAAACAATTAGCGTGA-CAAGCTCCAAACTTGAATC-TAA
1 TCGTAGATTCAATATCGCAACCTCCAAAACAATTAGCGTGACCAAGCTCCAAACTTGAATCTTAA
*
86420546 GGCTTGTAGGTTCAATGTCGCAGCCTCCAAAACAGTTAGCGTGAGCTTAAGCTCCCAGCTGAAAT
66 GGCTTGTAGGTTCAATGTCGCAGCCTCCAAAACAGTTAGCGTGAGCTCAAGCTCCCAGCTGAAAT
*
86420611 CTTAAGGCTT-GCAGG-TCTAGTA-CTACAACCT-TCAAAA-TAATTAACACGAGCTCAAG
131 CTTAAGG-TTCGCAGGTTC-AATATC-ACAACCTCT-AAAACT-ATTAACACGAGCTCAAG
86420667 CTCTTAGCTG
Statistics
Matches: 159, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
205 5 0.03
206 95 0.60
207 20 0.13
210 39 0.25
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (209 bp):
TCGTAGATTCAATATCGCAACCTCCAAAACAATTAGCGTGACCAAGCTCCAAACTTGAATCTTAA
GGCTTGTAGGTTCAATGTCGCAGCCTCCAAAACAGTTAGCGTGAGCTCAAGCTCCCAGCTGAAAT
CTTAAGGTTCGCAGGTTCAATATCACAACCTCTAAAACTATTAACACGAGCTCAAGATTCCAACT
GTAATATTAAGGGA
Found at i:86420882 original size:17 final size:17
Alignment explanation
Indices: 86420860--86420895 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
86420850 TTACTTGAGT
* *
86420860 TTGAAAGTTTGCTTAAG
1 TTGAAAATTTGCTAAAG
86420877 TTGAAAATTTGCTAAAG
1 TTGAAAATTTGCTAAAG
86420894 TT
1 TT
86420896 CACAAAGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.33, C:0.06, G:0.19, T:0.42
Consensus pattern (17 bp):
TTGAAAATTTGCTAAAG
Found at i:86428617 original size:32 final size:30
Alignment explanation
Indices: 86428580--86428653 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 30
86428570 GAAATGTGTA
86428580 TGTATGATTGATTTATGATATGCTTATGATAG
1 TGTATGA-T-ATTTATGATATGCTTATGATAG
86428612 TGTATGATA-TT-T-ATATGCTTATGATAG
1 TGTATGATATTTATGATATGCTTATGATAG
86428639 TGTATGATATTTATG
1 TGTATGATATTTATG
86428654 TTTAAATGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
27 24 0.62
28 3 0.08
29 3 0.08
30 1 0.03
31 1 0.03
32 7 0.18
ACGTcount: A:0.28, C:0.03, G:0.20, T:0.49
Consensus pattern (30 bp):
TGTATGATATTTATGATATGCTTATGATAG
Found at i:86428629 original size:27 final size:27
Alignment explanation
Indices: 86428597--86428652 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
86428587 TTGATTTATG
86428597 ATATGCTTATGATAGTGTATGATATTT
1 ATATGCTTATGATAGTGTATGATATTT
86428624 ATATGCTTATGATAGTGTATGATATTT
1 ATATGCTTATGATAGTGTATGATATTT
86428651 AT
1 AT
86428653 GTTTAAATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.30, C:0.04, G:0.18, T:0.48
Consensus pattern (27 bp):
ATATGCTTATGATAGTGTATGATATTT
Found at i:86428982 original size:18 final size:18
Alignment explanation
Indices: 86428951--86428988 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
86428941 AATTCTTTCC
*
86428951 TTGGTATTATTTCACTTA
1 TTGGTATTATTTCAATTA
86428969 TTGGTTATTA-TTCAATTA
1 TTGG-TATTATTTCAATTA
86428987 TT
1 TT
86428989 TTCTTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.24, C:0.08, G:0.11, T:0.58
Consensus pattern (18 bp):
TTGGTATTATTTCAATTA
Found at i:86429284 original size:5 final size:6
Alignment explanation
Indices: 86429266--86429312 Score: 58
Period size: 6 Copynumber: 7.7 Consensus size: 6
86429256 TAATTTAGTC
* * *
86429266 TTATTT TTATTT TTATTT TAATGTT TTATTT TTAATT TAATTT TTAT
1 TTATTT TTATTT TTATTT TTAT-TT TTATTT TTATTT TTATTT TTAT
86429313 ATTCTAAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
6 29 0.85
7 5 0.15
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (6 bp):
TTATTT
Found at i:86429294 original size:19 final size:18
Alignment explanation
Indices: 86429268--86429312 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 18
86429258 ATTTAGTCTT
*
86429268 ATTTTTATTTTTATTTTA
1 ATTTTTATTTTTAATTTA
86429286 ATGTTTTATTTTTAATTTA
1 AT-TTTTATTTTTAATTTA
86429305 ATTTTTAT
1 ATTTTTAT
86429313 ATTCTAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
ATTTTTATTTTTAATTTA
Found at i:86436840 original size:17 final size:18
Alignment explanation
Indices: 86436818--86436853 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
86436808 AAGAATACTA
86436818 TTTTATATTAAAAG-TTT
1 TTTTATATTAAAAGATTT
*
86436835 TTTTATATTTAAAGATTT
1 TTTTATATTAAAAGATTT
86436853 T
1 T
86436854 ATTTTTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (18 bp):
TTTTATATTAAAAGATTT
Found at i:86441771 original size:26 final size:26
Alignment explanation
Indices: 86441741--86441805 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
86441731 GCAACTCTTA
* *
86441741 TGAGCATCTCG-TTATATGGCTCTTCG
1 TGAGCATCCCGATTA-AAGGCTCTTCG
* *
86441767 TGAGCTTCCCGATTAAAGGCTCTTTG
1 TGAGCATCCCGATTAAAGGCTCTTCG
*
86441793 TGAGCTTCCCGAT
1 TGAGCATCCCGAT
86441806 ATGACTCGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 31 0.91
27 3 0.09
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (26 bp):
TGAGCATCCCGATTAAAGGCTCTTCG
Found at i:86445080 original size:46 final size:45
Alignment explanation
Indices: 86444948--86445117 Score: 143
Period size: 46 Copynumber: 3.7 Consensus size: 45
86444938 ACTTGTGTGA
*
86444948 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGA-A-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-TTGA-GAGAGT
* * * * *
86444994 GCTGGT-TAAGACCATCTCTAGGACATGGCATCAGCATTGAGACGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAGA-GAGT
*
86445041 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTTGAGAG-GT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGAGAGT
* *
86445085 AAACTAGTGTAAAACATGTCTGGGACATGCATC
1 --GCTAGTGTAAGACATGTCTGGGACATGCATC
86445118 AACTACGAGA
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
44 6 0.06
45 7 0.07
46 60 0.60
47 22 0.22
48 5 0.05
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGAGAGT
Found at i:86445111 original size:93 final size:92
Alignment explanation
Indices: 86444948--86445118 Score: 204
Period size: 93 Copynumber: 1.8 Consensus size: 92
86444938 ACTTGTGTGA
* * * *
86444948 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGCTGGTTAAGACCATCTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGAGGAAAGCTAGTTAAGAACATCTCT
86445013 AGGACATGGCATCAGCATTGAGACGAGT
66 AGGACAT-GCATCAGCATTGAGACGAGT
* ** *
86445041 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTTGA-GAGGTAAA-CTAGTGTAA-AACATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-ACATGAGG-AAAGCTAGT-TAAGAACATC
*
86445103 TCTGGGACATGCATCA
63 TCTAGGACATGCATCA
86445119 ACTACGAGAT
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
92 6 0.09
93 53 0.80
94 7 0.11
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGAGGAAAGCTAGTTAAGAACATCTCT
AGGACATGCATCAGCATTGAGACGAGT
Found at i:86449871 original size:21 final size:22
Alignment explanation
Indices: 86449828--86449873 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
86449818 TAACTCATGT
*
86449828 GTTTTTTCTAAAAATAAGCTAA
1 GTTTTTTCTAAAAATAAGATAA
86449850 GTTTTGTTCT-AAAATAA-ATAA
1 GTTTT-TTCTAAAAATAAGATAA
86449871 GTT
1 GTT
86449874 GACTGTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 6 0.27
22 12 0.55
23 4 0.18
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (22 bp):
GTTTTTTCTAAAAATAAGATAA
Found at i:86451022 original size:106 final size:95
Alignment explanation
Indices: 86450921--86451110 Score: 258
Period size: 95 Copynumber: 2.0 Consensus size: 95
86450911 TAACATAATG
* *
86450921 ATAATGATGAATATTAAAAATATATAATTCCATTATATAGTTACATATTTATTAATTTATTTATA
1 ATAATGATGTATA-T-AAAATATAT--TT-CATTATATAATTACATATTTATTAATTTATTTATA
86450986 TAAATAA-ATGAATTATTAATTAAAATATTTTTAAC
61 TAAATAATAT-AATTATTAATTAAAATATTTTTAAC
* * *
86451021 ATAATGCTGTATATAAAATATATTTTATTATATAATTACATATTTATTATTTTATTTATATAAAT
1 ATAATGATGTATATAAAATATATTTCATTATATAATTACATATTTATTAATTTATTTATATAAAT
*
86451086 AATATATTTATTAATTAAAA-ATTTT
66 AATATAATTATTAATTAAAATATTTT
86451111 AAAAAATTTA
Statistics
Matches: 83, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
94 5 0.06
95 53 0.64
96 4 0.05
98 9 0.11
99 1 0.01
100 11 0.13
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (95 bp):
ATAATGATGTATATAAAATATATTTCATTATATAATTACATATTTATTAATTTATTTATATAAAT
AATATAATTATTAATTAAAATATTTTTAAC
Found at i:86451130 original size:95 final size:94
Alignment explanation
Indices: 86450952--86451135 Score: 230
Period size: 95 Copynumber: 1.9 Consensus size: 94
86450942 ATATAATTCC
*
86450952 ATTATATAGTTACATATTTATTAATTTATTTATATAAATAAATGAATTATTAATTAAAATATTTT
1 ATTATATAATTACATATTTATTAATTTATTTATATAAATAAATGAATTATTAATTAAAATATTTT
* * ** *
86451017 TAACATAATGCTGTATATAAAATATATTTT
66 AAAAATAAAAC-GAATATAAAATATATTTT
* *
86451047 ATTATATAATTACATATTTATTATTTTATTTATATAAATAATAT-ATTTATTAATTAAAA-ATTT
1 ATTATATAATTACATATTTATTAATTTATTTATATAAATAA-ATGAATTATTAATTAAAATATTT
86451110 TAAAAAATTTAAAAC-AATATAAAATA
65 T-AAAAA--TAAAACGAATATAAAATA
86451136 AAAAATATAA
Statistics
Matches: 77, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
94 5 0.06
95 66 0.86
96 2 0.03
97 4 0.05
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (94 bp):
ATTATATAATTACATATTTATTAATTTATTTATATAAATAAATGAATTATTAATTAAAATATTTT
AAAAATAAAACGAATATAAAATATATTTT
Found at i:86454149 original size:22 final size:21
Alignment explanation
Indices: 86454112--86454158 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
86454102 TCAGGAATAT
*
86454112 TTTATGTATATCTTTTCCTT-A
1 TTTATGTATATATTTT-CTTGA
86454133 TTTATGTATATTATTTTCTTGA
1 TTTATGTATA-TATTTTCTTGA
86454155 TTTA
1 TTTA
86454159 CGAGCTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.21, C:0.09, G:0.06, T:0.64
Consensus pattern (21 bp):
TTTATGTATATATTTTCTTGA
Found at i:86458160 original size:18 final size:19
Alignment explanation
Indices: 86458127--86458164 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
86458117 AGACTCCAGG
*
86458127 TCTGATTCTTTTCAATCAT
1 TCTGATTCTCTTCAATCAT
86458146 TCTGATT-TCTTCAATCAT
1 TCTGATTCTCTTCAATCAT
86458164 T
1 T
86458165 GCTTGCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.53
Consensus pattern (19 bp):
TCTGATTCTCTTCAATCAT
Found at i:86482567 original size:46 final size:47
Alignment explanation
Indices: 86482481--86482701 Score: 181
Period size: 46 Copynumber: 4.7 Consensus size: 47
86482471 GTATATCTGT
*
86482481 GCCGATGCTATGTCCCAAACATGGTCTTACACT-GAC--ACGTCTCGTA-
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTAG-CTTACGTCTCGTAG
* *
86482527 GCCGATGCATGTTCCAGACATGTCTTACACTAGCTTACGTCTTG-AG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGTAG
* * * *
86482573 GCCGATGCATGTCCCAGACATGTTTTACACTAGCACT-CGTCTC-AAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TTACGTCTCGTAG
* * * * * *
86482619 GCTGATGCCATGTCCCAGACATGGTTTTACACTGGCTTTCATAAT-GT-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACGT-CTCGTAG
* *
86482667 GCCAATGCATGTCCCAGACATGTCTTGCACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
86482702 CACACAAGCA
Statistics
Matches: 144, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
44 11 0.08
45 13 0.09
46 70 0.49
47 30 0.21
48 19 0.13
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGTAG
Found at i:86484150 original size:40 final size:40
Alignment explanation
Indices: 86484106--86484181 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
86484096 TAGTGCCACA
86484106 TATAGCCGAAGCTAT-TCCAATTCGCACACTAAGTGCTTTC
1 TATAGCCGAAGCTATCTCCAA-TCGCACACTAAGTGCTTTC
* * *
86484146 TATAGCCGAAGTTATCTCGAATCGCGCACTAAGTGC
1 TATAGCCGAAGCTATCTCCAATCGCACACTAAGTGC
86484182 CAAGCATAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 28 0.88
41 4 0.12
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (40 bp):
TATAGCCGAAGCTATCTCCAATCGCACACTAAGTGCTTTC
Found at i:86491799 original size:46 final size:46
Alignment explanation
Indices: 86491749--86491942 Score: 112
Period size: 46 Copynumber: 4.3 Consensus size: 46
86491739 ATCTGCTTCG
*
86491749 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATTTATTCCA
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATTTATTCCA
* * * * * ** * * *
86491795 CTGCCAAATATAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCT
1 CTGCCAAATACAGGAAGACA-AGATCTGCAATCTTCAATTTATTCCA
* * * ** * * * ** *
86491840 CTG--TAGT-CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT-CG
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAAT-TTATTCCA
* *
86491883 CTGCCAAATACAGAAAGACAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATTTATTCCA
86491929 CTGCCAAATACAGG
1 CTGCCAAATACAGG
86491943 GAGATAGAAT
Statistics
Matches: 100, Mismatches: 40, Indels: 16
0.64 0.26 0.10
Matches are distributed among these distances:
41 3 0.03
42 9 0.09
43 12 0.12
44 1 0.01
45 19 0.19
46 52 0.52
47 4 0.04
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATTTATTCCA
Found at i:86492168 original size:133 final size:134
Alignment explanation
Indices: 86491645--86492689 Score: 1760
Period size: 134 Copynumber: 7.9 Consensus size: 134
86491635 GATCTGGTTT
* * * * *
86491645 TCTTCACTCTATTCTACTGCCAAACACAGGGAGATAGAGTTATCGGCTTCAATGCACTCCACTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
86491710 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
86491775 GCAA
131 GCAA
* *
86491779 TCTTCAATTTATTCCACTGCCAAATATAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
* *
86491844 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGAAAGACAAGATCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
86491909 GCAA
131 GCAA
* *
86491913 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
* *
86491978 AGTCAGGGAGGTAAAATCTGCCATCTTCGACCTGCTTCGCTGCCAAATATAGGAAGGCAAGATCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
86492043 GCAA
131 GCAA
* *
86492047 TCTTCAATCTATTCCACTGCC-AA-CCAGGGAGATAGAGTTATTGGCTTCAATGTACTCCTCTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
* * *
86492110 AGTCA-GGAGGTATAAAATCTGCCATCTTTGATCTGCTACGCTGCCAAATACAAGAAGGCAAGAT
66 AGTCAGGGAGG--TAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGAT
86492174 CTGCAA
129 CTGCAA
86492180 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATC-GCTTCAATGTACTCC-C--T
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
86492241 A-TCA-GGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
86492304 GCAA
131 GCAA
* *
86492308 TCTTCAATCTATCCCACTGCCAAATACAGGGAGATAAAGTTATCGGCTTCAATGTACTCCTCTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
86492373 AGTCAGGGA-GTAAAA---GCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
86492434 GCAA
131 GCAA
86492438 TCTTCAATCTATTCCACTGCCAAATACA-GGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
86492502 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
86492567 GCAA
131 GCAA
* * *
86492571 TCTTCAATCTATTCCACTGCCAAATACA-AGAGATAGAGTTATCGGCTTCAATGTACTCCACTAT
1 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
86492635 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAA
66 AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAA
86492690 AGAAAGTCTG
Statistics
Matches: 859, Mismatches: 38, Indels: 29
0.93 0.04 0.03
Matches are distributed among these distances:
128 97 0.11
129 59 0.07
130 92 0.11
131 7 0.01
132 43 0.05
133 252 0.29
134 292 0.34
135 17 0.02
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (134 bp):
TCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCTCTGT
AGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCT
GCAA
Found at i:86492460 original size:46 final size:46
Alignment explanation
Indices: 86492408--86492598 Score: 153
Period size: 46 Copynumber: 4.3 Consensus size: 46
86492398 ATCTGCTTCG
86492408 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
** * * ** * * *
86492454 CTGCCAAATACAGG-AGATAGAGTTAT-C-GGCTTCAATGTACTCCT
1 CTGCCAAATACAGGAAGGCA-AGATCTGCAATCTTCAATCTATTCCA
* * * * * * * * *
86492498 CTG--TAGT-CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT-CG
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCT-ATTCCA
86492541 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
86492587 CTGCCAAATACA
1 CTGCCAAATACA
86492599 AGAGATAGAG
Statistics
Matches: 105, Mismatches: 31, Indels: 18
0.68 0.20 0.12
Matches are distributed among these distances:
41 7 0.07
42 7 0.07
43 11 0.10
44 16 0.15
45 8 0.08
46 56 0.53
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
Found at i:86492834 original size:42 final size:42
Alignment explanation
Indices: 86492782--86492862 Score: 137
Period size: 42 Copynumber: 1.9 Consensus size: 42
86492772 GGCAAGATCT
86492782 GCTATCTTCAAACAGCTCTACTACAAACGAG-GTGCAAGTTG
1 GCTATCTTCAAACAGCTCTACTACAAACGAGAGTGCAAGTTG
*
86492823 GCTATCTTTCAACCAGCTCTACTACAAACGAGAGTGCAAG
1 GCTATC-TTCAAACAGCTCTACTACAAACGAGAGTGCAAG
86492863 GTTTGTCTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
41 6 0.16
42 24 0.65
43 7 0.19
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (42 bp):
GCTATCTTCAAACAGCTCTACTACAAACGAGAGTGCAAGTTG
Found at i:86492927 original size:127 final size:124
Alignment explanation
Indices: 86492701--86492932 Score: 349
Period size: 127 Copynumber: 1.8 Consensus size: 124
86492691 GAAAGTCTGA
* *
86492701 TATCTTCAACCAGCTCTACTACAAACGAGAGAGGCAAGGTTTTGTCGATCTGCTTCGCTGTCAGT
1 TATCTTCAACCAGCTCTACTACAAACGAGAGAGGCAAGGTTTTGTCGATCTGCTTCACTGTCAAT
* *
86492766 GCAGAAGGCAAGATCTGCTATCTTCAAACAGCTCTACTACAAACGAGGTGCAAGTTGGC
66 GCAGAAGGCAAGATCTGATAACTTCAAACAGCTCTACTACAAACGAGGTGCAAGTTGGC
* *
86492825 TATCTTTCAACCAGCTCTACTACAAACGAGAG-TGCAAGGTTTGTCTTCGATCTGCTTCACTGTC
1 TATC-TTCAACCAGCTCTACTACAAACGAGAGAGGCAAGGTTT-T-GTCGATCTGCTTCACTGTC
* *
86492889 AATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTGCTAC
63 AATGCA-GAAGGCAAGATCTGATAACTTCAAACAGCTCTACTAC
86492933 GACCGAGAGA
Statistics
Matches: 96, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
124 13 0.14
125 28 0.29
126 22 0.23
127 33 0.34
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (124 bp):
TATCTTCAACCAGCTCTACTACAAACGAGAGAGGCAAGGTTTTGTCGATCTGCTTCACTGTCAAT
GCAGAAGGCAAGATCTGATAACTTCAAACAGCTCTACTACAAACGAGGTGCAAGTTGGC
Found at i:86497063 original size:19 final size:20
Alignment explanation
Indices: 86497039--86497082 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
86497029 CGTGAAAGTC
* *
86497039 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
86497058 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
86497078 -AATGC
1 TAATGC
86497083 CAAAAGAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:86501136 original size:39 final size:40
Alignment explanation
Indices: 86501093--86501176 Score: 143
Period size: 39 Copynumber: 2.1 Consensus size: 40
86501083 ATAGGGGTAA
*
86501093 ATAAAGGTACTGAATGACTGACTGTTACTGAATGATATT-
1 ATAAAGGTACTGAATGACTAACTGTTACTGAATGATATTG
*
86501132 ATAAAGGTTCTGAATGACTAACTGTTACTGAATGATATTG
1 ATAAAGGTACTGAATGACTAACTGTTACTGAATGATATTG
86501172 ATAAA
1 ATAAA
86501177 TTGATTGATA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
39 37 0.88
40 5 0.12
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (40 bp):
ATAAAGGTACTGAATGACTAACTGTTACTGAATGATATTG
Done.