Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 265 of 325
Found at i:86501164 original size:18 final size:18
Alignment explanation
Indices: 86501100--86501166 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 18
86501090 TAAATAAAGG
*
86501100 TACTGAATGACTGACTGT
1 TACTGAATGACTAACTGT
* **
86501118 TACTGAATGATATTATAAAGGT
1 TACTGAATG--A--CTAACTGT
86501140 T-CTGAATGACTAACTGT
1 TACTGAATGACTAACTGT
86501157 TACTGAATGA
1 TACTGAATGA
86501167 TATTGATAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
17 6 0.16
18 17 0.46
19 1 0.03
20 1 0.03
21 7 0.19
22 5 0.14
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (18 bp):
TACTGAATGACTAACTGT
Found at i:86503344 original size:21 final size:21
Alignment explanation
Indices: 86503305--86503415 Score: 91
Period size: 21 Copynumber: 5.3 Consensus size: 21
86503295 ACATCATTTT
*
86503305 CAGAAGCCC-GAA-GGCTAAA
1 CAGAAGCCCATAAGGGCTAAA
* *
86503324 CAGAAGCACATAAGTGCTAAA
1 CAGAAGCCCATAAGGGCTAAA
* * *
86503345 CAGAAACCCCATAAGGGTTGAA
1 CAG-AAGCCCATAAGGGCTAAA
* * *
86503367 CAGAAGCTCATAAGAGCTGAA
1 CAGAAGCCCATAAGGGCTAAA
* * *
86503388 CGGAAACCCATAAGGGTTAAA
1 CAGAAGCCCATAAGGGCTAAA
86503409 CAGAAGC
1 CAGAAGC
86503416 TCAAAAGAGC
Statistics
Matches: 69, Mismatches: 20, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
19 8 0.12
20 2 0.03
21 43 0.62
22 16 0.23
ACGTcount: A:0.43, C:0.22, G:0.23, T:0.12
Consensus pattern (21 bp):
CAGAAGCCCATAAGGGCTAAA
Found at i:86503474 original size:42 final size:42
Alignment explanation
Indices: 86503320--86503477 Score: 190
Period size: 42 Copynumber: 3.7 Consensus size: 42
86503310 GCCCGAAGGC
* * *
86503320 TAAACAGAAGCACATAAGTGCTAAACAGAAACCCCATAAGGGT
1 TAAACAGAAGCTCATAAGAGCTAAAC-GAAAACCCATAAGGGT
* * *
86503363 TGAACAGAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGT
1 TAAACAGAAGCTCATAAGAGCTAAACGAAAACCCATAAGGGT
* * * * *
86503405 TAAACAGAAGCTCAAAAGAGCTGAACGAAAACTCATATGAGT
1 TAAACAGAAGCTCATAAGAGCTAAACGAAAACCCATAAGGGT
* *
86503447 TAAACAGAAGCTCGTGAGAGCTAAACGAAAA
1 TAAACAGAAGCTCATAAGAGCTAAACGAAAA
86503478 GTAAACACGA
Statistics
Matches: 99, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 77 0.78
43 22 0.22
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.15
Consensus pattern (42 bp):
TAAACAGAAGCTCATAAGAGCTAAACGAAAACCCATAAGGGT
Found at i:86505424 original size:69 final size:69
Alignment explanation
Indices: 86505329--86505599 Score: 301
Period size: 69 Copynumber: 3.9 Consensus size: 69
86505319 GTTCATAGGC
* * ** *
86505329 GAAGAGCCGCGACCTCCAAAATAGTTAGCGAGAGCAAAGCTCTTAGTTGTAAAATCAAGGTTCGC
1 GAAGAGTCGCGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAGATGTAAAATCAAGGTTCGC
86505394 AAGT
66 AAGT
* * * * * *
86505398 GAAGAGTCGCGAACTCCAAAAAAGTTAGCTAGAGCAAAGCTCCCAAATGTAAAATTAAGGTTCGT
1 GAAGAGTCGCGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAGATGTAAAATCAAGGTTCGC
*
86505463 AGGT
66 AAGT
* * * *
86505467 GAAGAGTTGCGACCTTCAAAACAGTTAGCGAGAGCAAAGCTCCCAGCA-GTAAAACCAAGGATCG
1 GAAGAGTCGCGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAG-ATGTAAAATCAAGGTTCG
*
86505531 CAAGC
65 CAAGT
* * * * * * * *
86505536 AAAGAGTTGCGACCTCCAAAACAGTTAGTGAGAGCAAAGATCCCAGCTGCACAATAAAGGTTCG
1 GAAGAGTCGCGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAGATGTAAAATCAAGGTTCG
86505600 TAGACAAAAA
Statistics
Matches: 167, Mismatches: 33, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
69 166 0.99
70 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (69 bp):
GAAGAGTCGCGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAGATGTAAAATCAAGGTTCGC
AAGT
Found at i:86505562 original size:138 final size:138
Alignment explanation
Indices: 86505317--86505580 Score: 350
Period size: 138 Copynumber: 1.9 Consensus size: 138
86505307 GACAAAATCG
* ** **
86505317 AGGTTCATAGGCGAAGAGCCGCGACCTCCAAAATAGTTAGCGAGAGCAAAGCTCTTAGTTGTAAA
1 AGGTTCATAGGCGAAGAGCCGCGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAGCAGTAAA
* * ** *
86505382 ATCAAGGTTCGCAAGTGAAGAGTCGCGAACTCCAAAAAAGTTAGCT-AGAGCAAAGCTCCCAAAT
66 ACCAAGGATCGCAAGCAAAGAGTCGCGAACTCCAAAAAAGTTAG-TGAGAGCAAAGATCCCAAAT
86505446 GTAAAATTA
130 GTAAAATTA
* * ** *
86505455 AGGTTCGTAGGTGAAGAGTTGCGACCTTCAAAACAGTTAGCGAGAGCAAAGCTCCCAGCAGTAAA
1 AGGTTCATAGGCGAAGAGCCGCGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAGCAGTAAA
* * *
86505520 ACCAAGGATCGCAAGCAAAGAGTTGCGACCTCCAAAACAGTTAGTGAGAGCAAAGATCCCA
66 ACCAAGGATCGCAAGCAAAGAGTCGCGAACTCCAAAAAAGTTAGTGAGAGCAAAGATCCCA
86505581 GCTGCACAAT
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
137 1 0.01
138 106 0.99
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (138 bp):
AGGTTCATAGGCGAAGAGCCGCGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCAGCAGTAAA
ACCAAGGATCGCAAGCAAAGAGTCGCGAACTCCAAAAAAGTTAGTGAGAGCAAAGATCCCAAATG
TAAAATTA
Found at i:86505978 original size:102 final size:102
Alignment explanation
Indices: 86505801--86506002 Score: 314
Period size: 102 Copynumber: 2.0 Consensus size: 102
86505791 GAAAAACAAG
* * * *
86505801 AATACAATATTATTATTCAATTACATCACCAACCCCCAATACCCTAGACAGCATTGATAGGAGCG
1 AATACAAGATTATTATTCAATTACATCACCAACCCCCAACACCCTAGACAGCATTGACAAGAGCG
* *
86505866 ACACCCTCAACAGCTGATGAAGCAACAGTAACACCCC
66 ACACCCTCAACAACTGATGAAGCAACAATAACACCCC
* * *
86505903 AATACAAGATTATTATTCAATTACATCACTAACCCCCAACACCCTAGTCCGCATTGACAAGAGCG
1 AATACAAGATTATTATTCAATTACATCACCAACCCCCAACACCCTAGACAGCATTGACAAGAGCG
*
86505968 ACACCTTCAACAACTGATGAAGCAACAATAACACC
66 ACACCCTCAACAACTGATGAAGCAACAATAACACC
86506003 TCTAGTTACC
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 90 1.00
ACGTcount: A:0.39, C:0.30, G:0.11, T:0.20
Consensus pattern (102 bp):
AATACAAGATTATTATTCAATTACATCACCAACCCCCAACACCCTAGACAGCATTGACAAGAGCG
ACACCCTCAACAACTGATGAAGCAACAATAACACCCC
Found at i:86516825 original size:90 final size:90
Alignment explanation
Indices: 86516672--86516840 Score: 288
Period size: 90 Copynumber: 1.9 Consensus size: 90
86516662 GCATCACATC
86516672 CAAAATGTGTACACAAATTTCACCAGAAAAAAATATAAAAATAAATTAATAACTATAATTTCATT
1 CAAAATGTGTACACAAATTTCACCAGAAAAAAATATAAAAATAAATTAATAACTATAATTTCATT
86516737 GAAAGCATTACTTTTCAACTACTTT
66 GAAAGCATTACTTTTCAACTACTTT
* *
86516762 CAAAATGTGTACACAAATTTCACCAGAAAAAAATATAAACA-AAA-TAATAAATTTATAATTTCA
1 CAAAATGTGTACACAAATTTCACCAGAAAAAAATATAAAAATAAATTAAT-AA-CTATAATTTCA
86516825 TTGAAAGCATTACTTT
64 TTGAAAGCATTACTTT
86516841 CAAAATGTGT
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
88 4 0.05
89 5 0.07
90 66 0.88
ACGTcount: A:0.49, C:0.14, G:0.06, T:0.31
Consensus pattern (90 bp):
CAAAATGTGTACACAAATTTCACCAGAAAAAAATATAAAAATAAATTAATAACTATAATTTCATT
GAAAGCATTACTTTTCAACTACTTT
Found at i:86516856 original size:90 final size:89
Alignment explanation
Indices: 86516672--86516884 Score: 272
Period size: 90 Copynumber: 2.5 Consensus size: 89
86516662 GCATCACATC
86516672 CAAAATGTGTACACAAATTTCACCAGAAAAAAATATAAAAATAAATTAATAACTATAATTTCATT
1 CAAAATGTGTACACAAATTTCACCAGAAAAAAATATAAAAATAAATTAATAACTATAATTTCATT
*
86516737 GAAAGCATTACTTTTCAACTACTTT
66 GAAAGCATTACTTTTCAAC-AATTT
* *
86516762 CAAAATGTGTACACAAATTTCACCAGAAAAAAATATAAACA-AAA-TAATAAATTTATAATTTCA
1 CAAAATGTGTACACAAATTTCACCAGAAAAAAATATAAAAATAAATTAAT-AA-CTATAATTTCA
86516825 TTGAAAGC---A---TT--AC--TTT
64 TTGAAAGCATTACTTTTCAACAATTT
*
86516841 CAAAATGTGTACA-AAATTTCACCAGAAAAAAATAAAAAAATAAA
1 CAAAATGTGTACACAAATTTCACCAGAAAAAAATATAAAAATAAA
86516885 ATGATAAATT
Statistics
Matches: 116, Mismatches: 4, Indels: 17
0.85 0.03 0.12
Matches are distributed among these distances:
78 25 0.22
79 19 0.16
82 2 0.02
84 2 0.02
87 1 0.01
88 4 0.03
89 5 0.04
90 58 0.50
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (89 bp):
CAAAATGTGTACACAAATTTCACCAGAAAAAAATATAAAAATAAATTAATAACTATAATTTCATT
GAAAGCATTACTTTTCAACAATTT
Found at i:86521174 original size:3 final size:3
Alignment explanation
Indices: 86521166--86521196 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
86521156 ATTAAATTAA
86521166 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
86521197 AAACACCGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:86525261 original size:37 final size:37
Alignment explanation
Indices: 86525185--86525271 Score: 122
Period size: 37 Copynumber: 2.3 Consensus size: 37
86525175 ATAAATTATA
*
86525185 TTTAATAAAATAAAATATTTATTATATTTATTTGTTT
1 TTTAATAAAATAAAATATTTATTATATTTATTGGTTT
*
86525222 TTTAATAGAATAAAATATTTATTATATTTA-TGGTATT
1 TTTAATAAAATAAAATATTTATTATATTTATTGGT-TT
*
86525259 TTTTATATAAATA
1 TTTAATA-AAATA
86525272 TTTTTTATGT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
36 3 0.07
37 37 0.84
38 4 0.09
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (37 bp):
TTTAATAAAATAAAATATTTATTATATTTATTGGTTT
Found at i:86525367 original size:17 final size:18
Alignment explanation
Indices: 86525347--86525381 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
86525337 TATATTTTTT
86525347 TAAAAATT-ATTTTTAAA
1 TAAAAATTAATTTTTAAA
86525364 TAAAAATTAATTTTTAAA
1 TAAAAATTAATTTTTAAA
86525382 AAATAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TAAAAATTAATTTTTAAA
Found at i:86528781 original size:434 final size:429
Alignment explanation
Indices: 86527920--86529626 Score: 1795
Period size: 434 Copynumber: 3.9 Consensus size: 429
86527910 ACTAGCCTAA
* * *
86527920 GGCTAAATGAAGTTTA-TTCGAGCATGAAATTAAGCATACTCGATTG-GGATTTAAAAATGGATT
1 GGCTAAATG-GGTTTAGTT-GAGCATGAAATTAATCATACTCAATTGAGG-TTT-AAAATGGATT
** ** * ** * *
86527983 TGCACGTAATGGTAATGAGTGAAAATGAGGAAGGACTTAAAAA-ACAATTGAACCAAAAATAAGA
62 TAAAAATAATGGTGAT-AGTGAAAGGGAGAAAAGACTTAAAAAGA-AATTGAACCAAAAATAAGA
* * * *
86528047 AAATCGAAAAAAAAATGGAAGTAAACTTGAATAGCTACTAATG-AGTGAAAAAGAAAAGAATTGT
125 AAAT-GGAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCA-TGAAAGAGAAAAGAATTGT
* * * *
86528111 TGTTAATTCTATTAAAGTGTGTTTTTTCCAAGCTACCATTACAAGGTATTTATATATTTTTCATA
188 TTTTAATTCTATTAAAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTACACATTTTTCATA
* * *
86528176 TGACAAATTTAGCATGATTCCTT-CTAAGATTATGCCTAACAACCAACTAAAGTCAATTTTTTTT
253 TGCCAAATTTAGCATGATTCCTTCCTAAGATTATGCCTAACAACCAACTAAAATAAATTTTTTTT
* * * * **
86528240 ATATTCCTAGATTTTGACAAATTCACAATCTGATTTTTAGTCAGCCACTAATTCAACAACTTTTC
318 ATATTCATAGAGTTTGACAAAATCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTC
** * * *
86528305 AATTTGGCCCCTTTTATTGCTTATCGTTCCAATTTATAGCCCAATTTGCTA
383 AATTT-GCCAATTTTATTGCTT-CCTTTCCAA-TT-TAGCCCAATTTGCTT
* ** * *
86528356 GGCTAAATAAGGTTTAGTTGAGCATGAAATTAATCATACTCAATTTTGGTTTAAAATGAATTTCA
1 GGCTAAAT-GGGTTTAGTTGAGCATGAAATTAATCATACTCAATTGAGGTTTAAAATGGATTTAA
** * * * * *
86528421 GCACAAAGATGATAGTTGAAA-GGAGAAAAGACTTAAAAAGAAATTGAACTAAAAATAAGGAAAT
65 AAATAATGGTGATAG-TGAAAGGGAGAAAAGACTTAAAAAGAAATTGAACCAAAAATAAGAAAAT
*
86528485 GAGAAAAAAAATGGCAGTAAACTTCAATAGCTACTGATGCATGAAAGAGAAAAGAATTGTTTTTA
129 G-GAAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCATGAAAGAGAAAAGAATTGTTTTTA
* * *
86528550 ATTCTATTTAAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTACACACTTTTCATTTGCCA
193 ATTCTATTAAAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTACACATTTTTCATATGCCA
* * * *
86528615 AGTTTAGCATGATTAC-TCATACGATTATGCCTAACAACCAACTAAAATAAGATTTTTTTTTATA
258 AATTTAGCATGATTCCTTCCTAAGATTATGCCTAACAACCAACTAAAATAA-A-TTTTTTTTATA
* * * * * *
86528679 TTCATAGAGCTTGACAAAACCATATTATGATTTTTTATCAGCCACTAATTCTGCAACTTTTCAAT
321 TTCATAGAGTTTGACAAAATCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAAT
*
86528744 TTGACCAATTTTATTGTTTCCCTTTCCAATTTAGCCCAATTTGCTT
386 TTG-CCAATTTTATTGCTT-CCTTTCCAATTTAGCCCAATTTGCTT
* * *
86528790 GGCTAAATGGGTTTTAGTTGAGCATGAAATTGATCATACTCGATTGAGGTTTAAAATTGGATTTG
1 GGCTAAATGGG-TTTAGTTGAGCATGAAATTAATCATACTCAATTGAGGTTTAAAA-TGGATTTA
*** *
86528855 ATTGTAATGGTGATAAGTGAAAAGGAGAAAAGTCAAATAGACTTAAAAAGCAATTGAACCAAAAA
64 AAAATAATGGTGAT-AGTG-AAAGG-G---AG--AAA-AGACTTAAAAAGAAATTGAACCAAAAA
* * *
86528920 TAAGGAAATGG-AAAAAAATTGCTAGCAAACTTGAATAGCTACTGATGCATGAAAGAGAAAAGAA
120 TAAGAAAATGGAAAAAAAATGGC-AGTAAACTTGAATAGCTACTGATGCATGAAAGAGAAAAGAA
* ** * * * * *
86528984 TTATTTTTAATTCTATTCCAGTTTGTTTTTTCCAAGTCACCATTACAGGGTATTTATATATTTTT
184 TTGTTTTTAATTCTATTAAAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTACACATTTTT
* * *
86529049 CATCTGCCAAATTTAGCATGATT-CTTCCTAAGATTATGTCTAACAATCAACTAAAATCAAATTT
249 CATATGCCAAATTTAGCATGATTCCTTCCTAAGATTATGCCTAACAACCAACTAAAAT-AAATTT
* * * * * * *
86529113 TATTTCTATTCATA-AGGTTTGACAAATTCACAATCTGGTTTTTAATTAGCCACTAGTTCTCCAA
313 TTTTTATATTCATAGA-GTTTGACAAAATCACAATCTGATTTTTAATCAGCCACTAATTCTGCAA
* * *
86529177 C-TTTCAATTTCGCCTATTTTATTACTTCTTGTTCCAATTTAGCCCAATTTGCTT
377 CTTTTCAATTT-GCCAATTTTATTGCTTCCT-TTCCAATTTAGCCCAATTTGCTT
* * * * * *
86529231 GGCCAAATTGGGTTTAGTTGAGCATGAAACTAATCATACTCTATTGGGGTTGGAAAGTGGATTTA
1 GGCTAAA-TGGGTTTAGTTGAGCATGAAATTAATCATACTCAATTGAGGTT-TAAAATGGATTTA
* *
86529296 AAAATAATGGTGATAGGTGAAAGGGAGAAAGGACTTAAAAAGCAATTGAACCAAAAATAAGAAAA
64 AAAATAATGGTGATA-GTGAAAGGGAGAAAAGACTTAAAAAGAAATTGAACCAAAAATAAG-AAA
* * * **
86529361 ATGGAAAAAAAAATGACAGTACACTTGAATACCTACTGATATATGAAAGAGAAAAGAATTGTTTT
127 ATGG-AAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCATGAAAGAGAAAAGAATTGTTTT
** * * * * *
86529426 TAATTCT-TTAACAACGTGCTTTTTCGAAGCCACCCTTACAAGGTATTTATCTCTTTTTTTTTCA
191 TAATTCTATTAA-AGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTA-CAC---ATTTTTCA
* * * *
86529490 TATGCAAAAATTAGTATGATTCC-TCCTAAGATTATGCCTAACAACCAACTAAAATCAGATTTTT
251 TATGCCAAATTTAGCATGATTCCTTCCTAAGATTATGCCTAACAACCAACTAAAAT-AAATTTTT
* * * * * *
86529554 TTTCTATTAATAGAGTTTGA-AAAATTCACAATCTGGTTCTTAATCAGTCACTAATTCTGCAAAT
315 TTTATATTCATAGAGTTTGACAAAA-TCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACT
86529618 TTTCAATTT
379 TTTCAATTT
86529627 TGCCTTGTAA
Statistics
Matches: 1069, Mismatches: 158, Indels: 84
0.82 0.12 0.06
Matches are distributed among these distances:
433 34 0.03
434 266 0.25
435 122 0.11
436 141 0.13
437 5 0.00
438 4 0.00
439 111 0.10
440 19 0.02
441 109 0.10
442 72 0.07
443 149 0.14
444 37 0.03
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (429 bp):
GGCTAAATGGGTTTAGTTGAGCATGAAATTAATCATACTCAATTGAGGTTTAAAATGGATTTAAA
AATAATGGTGATAGTGAAAGGGAGAAAAGACTTAAAAAGAAATTGAACCAAAAATAAGAAAATGG
AAAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCATGAAAGAGAAAAGAATTGTTTTTAATT
CTATTAAAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTACACATTTTTCATATGCCAAAT
TTAGCATGATTCCTTCCTAAGATTATGCCTAACAACCAACTAAAATAAATTTTTTTTATATTCAT
AGAGTTTGACAAAATCACAATCTGATTTTTAATCAGCCACTAATTCTGCAACTTTTCAATTTGCC
AATTTTATTGCTTCCTTTCCAATTTAGCCCAATTTGCTT
Found at i:86529216 original size:877 final size:880
Alignment explanation
Indices: 86528016--86529626 Score: 2161
Period size: 877 Copynumber: 1.8 Consensus size: 880
86528006 AATGAGGAAG
* *
86528016 GACTTAAAAAACAATTGAACCAAAAATAAGAAAATCGAAAAAAAAATGGAAGTAAACTTGAATAG
1 GACTTAAAAAACAATTGAACCAAAAATAAGAAAATCGAAAAAAAAATGCAAGCAAACTTGAATAG
*
86528081 CTACTAATGAGTGAAAAAGAAAAGAATTGTTGTTAATTCTATTAAAGTGTGTTTTTTCCAAGCTA
66 CTACTAATGAGTGAAAAAGAAAAGAATTATTGTTAATTCTATTAAAGTGTGTTTTTTCCAAGCTA
86528146 CCATTACAAGGTATTTATATATTTTTCATATGACAAATTTAGCATGATTCCTTCTAAGATTATGC
131 CCATTACAAGGTATTTATATATTTTTCATATGACAAATTTAGCATGATTCCTTCTAAGATTATGC
* * * *
86528211 CTAACAACCAACTAAAGTCAATTTTTTTTATATTCCTAGATTTTGACAAATTCACAATCTGATTT
196 CTAACAACCAACTAAAATCAATTTTATTTATATTCATAGAGTTTGACAAATTCACAATCTGATTT
* * * *
86528276 TTAGTCAGCCACTAATTCAACAACTTTTCAATTTGGCCCCTTTTATTGCTTATCGTTCCAATTTA
261 TTAATCAGCCACTAATTCAACAACTTTTCAATTTCGCCCATTTTATTACTTATCGTTCCAA-TT-
* * **
86528341 TAGCCCAATTTGCTAGGCTAAATAAGGTTTAGTTGAGCATGAAATTAATCATACTCAATTTTGGT
324 TAGCCCAATTTGCTAGGCCAAATAAGGTTTAGTTGAGCATGAAACTAATCATACTCAATTGGGGT
* * ** *
86528406 T-TAAAATGAATTTCAGCACAAAGATGATAGTTGAAA-GGAGAAAAGACTTAAAAAGAAATTGAA
389 TGGAAAATGAATTTAAAAACAAAGATGATAGGTGAAAGGGAGAAAAGACTTAAAAAGAAATTGAA
* * * * *
86528469 CTAAAAATAAG-GAAAT-GAGAAAAAAAATGGCAGTAAACTTCAATAGCTACTGATGCATGAAAG
454 CCAAAAATAAGAAAAATGGA-AAAAAAAATGACAGTAAACTTCAATACCTACTGATACATGAAAG
* ** *
86528532 AGAAAAGAATTGTTTTTAATTCTATTTA-AGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTT
518 AGAAAAGAATTGTTTTTAATTCT-TTAACAACGTGCTTTTTCCAAGCCACCATTACAAGGTATTT
* * ** *
86528596 A-CAC-ACTTTTCATTTGCCAAGTTTAGCATGATTACTCATACGATTATGCCTAACAACCAACTA
582 ATCACTACTTTTCATATGCAAAAATTAGCATGATTACTCATAAGATTATGCCTAACAACCAACTA
* * * * *
86528659 AAATAAGATTTTTTTTTATATTCATAGAGCTTGACAAAA-CCATATTATGATTTTTTATCAGCCA
647 AAATAAGA-TTTTTTTTATATTAATAGAGCTTGA-AAAATCCACAATATGATTCTTAATCAGCCA
*
86528723 CTAATTCTGCAACTTTTCAATTTGACCAATTTTATTGTTTCCCTTTCCAATTTAGCCCAATTTGC
710 CTAATTCTGCAAATTTTCAATTTGACCAATTTTATTGTTTCCCTTTCCAATTTAGCCCAATTTGC
86528788 TTGGCTAAATGGGTTTTAGTTGAGCATGAAATTGATCATACTCGATTGAGGTTTAAAATTGGATT
775 TTGGCTAAATGGGTTTTAGTTGAGCATGAAATTGATCATACTCGATTGAGGTTTAAAATTGGATT
86528853 TGATTGTAATGGTGATAAGTGAAAAGGAGAAAAGTCAAATA
840 TGATTGTAATGGTGATAAGTGAAAAGGAGAAAAGTCAAATA
* * * * *
86528894 GACTTAAAAAGCAATTGAACCAAAAATAAGGAAAT-GGAAAAAAATTGCTAGCAAACTTGAATAG
1 GACTTAAAAAACAATTGAACCAAAAATAAGAAAATCGAAAAAAAAATGCAAGCAAACTTGAATAG
* * * ** *
86528958 CTACTGATGCA-TGAAAGAGAAAAGAATTATTTTTAATTCTATTCCAGTTTGTTTTTTCCAAG-T
66 CTACTAATG-AGTGAAAAAGAAAAGAATTATTGTTAATTCTATTAAAGTGTGTTTTTTCCAAGCT
* * *
86529021 CACCATTACAGGGTATTTATATATTTTTCATCTGCCAAATTTAGCATGATT-CTTCCTAAGATTA
130 -ACCATTACAAGGTATTTATATATTTTTCATATGACAAATTTAGCATGATTCCTT-CTAAGATTA
* * *
86529085 TGTCTAACAATCAACTAAAATCAAATTTTATTTCTATTCATA-AGGTTTGACAAATTCACAATCT
193 TGCCTAACAACCAACTAAAATC-AATTTTATTTATATTCATAGA-GTTTGACAAATTCACAATCT
* * * ** * * *
86529149 GGTTTTTAATTAGCCACTAGTTCTCCAAC-TTTCAATTTCGCCTATTTTATTACTTCTTGTTCCA
256 GATTTTTAATCAGCCACTAATTCAACAACTTTTCAATTTCGCCCATTTTATTACTTATCGTTCCA
* ** *
86529213 ATTTAGCCCAATTTGCTTGGCCAAATTGGGTTTAGTTGAGCATGAAACTAATCATACTCTATTGG
321 ATTTAGCCCAATTTGCTAGGCCAAATAAGGTTTAGTTGAGCATGAAACTAATCATACTCAATTGG
* * * * * * *
86529278 GGTTGGAAAGTGGATTTAAAAATAATGGTGATAGGTGAAAGGGAGAAAGGACTTAAAAAGCAATT
386 GGTTGGAAAATGAATTTAAAAACAAAGATGATAGGTGAAAGGGAGAAAAGACTTAAAAAGAAATT
* * *
86529343 GAACCAAAAATAAGAAAAATGGAAAAAAAAATGACAGTACACTTGAATACCTACTGATATATGAA
451 GAACCAAAAATAAGAAAAATGGAAAAAAAAATGACAGTAAACTTCAATACCTACTGATACATGAA
* *
86529408 AGAGAAAAGAATTGTTTTTAATTCTTTAACAACGTGCTTTTTCGAAGCCACCCTTACAAGGTATT
516 AGAGAAAAGAATTGTTTTTAATTCTTTAACAACGTGCTTTTTCCAAGCCACCATTACAAGGTATT
* ** * * *
86529473 TATCTCTTTTTTTTTCATATGCAAAAATTAGTATGATTCCTCCTAAGATTATGCCTAACAACCAA
581 TATCAC--TACTTTTCATATGCAAAAATTAGCATGATTACTCATAAGATTATGCCTAACAACCAA
* * * * * * *
86529538 CTAAAATCAGATTTTTTTTCTATTAATAGAGTTTGAAAAATTCACAATCTGGTTCTTAATCAGTC
644 CTAAAATAAGATTTTTTTTATATTAATAGAGCTTGAAAAATCCACAATATGATTCTTAATCAGCC
86529603 ACTAATTCTGCAAATTTTCAATTT
709 ACTAATTCTGCAAATTTTCAATTT
86529627 TGCCTTGTAA
Statistics
Matches: 624, Mismatches: 94, Indels: 27
0.84 0.13 0.04
Matches are distributed among these distances:
875 58 0.09
876 31 0.05
877 221 0.35
878 189 0.30
879 4 0.01
880 4 0.01
881 61 0.10
882 56 0.09
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.35
Consensus pattern (880 bp):
GACTTAAAAAACAATTGAACCAAAAATAAGAAAATCGAAAAAAAAATGCAAGCAAACTTGAATAG
CTACTAATGAGTGAAAAAGAAAAGAATTATTGTTAATTCTATTAAAGTGTGTTTTTTCCAAGCTA
CCATTACAAGGTATTTATATATTTTTCATATGACAAATTTAGCATGATTCCTTCTAAGATTATGC
CTAACAACCAACTAAAATCAATTTTATTTATATTCATAGAGTTTGACAAATTCACAATCTGATTT
TTAATCAGCCACTAATTCAACAACTTTTCAATTTCGCCCATTTTATTACTTATCGTTCCAATTTA
GCCCAATTTGCTAGGCCAAATAAGGTTTAGTTGAGCATGAAACTAATCATACTCAATTGGGGTTG
GAAAATGAATTTAAAAACAAAGATGATAGGTGAAAGGGAGAAAAGACTTAAAAAGAAATTGAACC
AAAAATAAGAAAAATGGAAAAAAAAATGACAGTAAACTTCAATACCTACTGATACATGAAAGAGA
AAAGAATTGTTTTTAATTCTTTAACAACGTGCTTTTTCCAAGCCACCATTACAAGGTATTTATCA
CTACTTTTCATATGCAAAAATTAGCATGATTACTCATAAGATTATGCCTAACAACCAACTAAAAT
AAGATTTTTTTTATATTAATAGAGCTTGAAAAATCCACAATATGATTCTTAATCAGCCACTAATT
CTGCAAATTTTCAATTTGACCAATTTTATTGTTTCCCTTTCCAATTTAGCCCAATTTGCTTGGCT
AAATGGGTTTTAGTTGAGCATGAAATTGATCATACTCGATTGAGGTTTAAAATTGGATTTGATTG
TAATGGTGATAAGTGAAAAGGAGAAAAGTCAAATA
Found at i:86531127 original size:21 final size:20
Alignment explanation
Indices: 86531097--86531135 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
86531087 ATAGAGTACA
*
86531097 GGTCTGACACAGCCGTGTGAG
1 GGTCTCACAC-GCCGTGTGAG
*
86531118 GGTCTCACACGCTGTGTG
1 GGTCTCACACGCCGTGTG
86531136 CCCACCAGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.15, C:0.26, G:0.36, T:0.23
Consensus pattern (20 bp):
GGTCTCACACGCCGTGTGAG
Found at i:86531762 original size:15 final size:15
Alignment explanation
Indices: 86531746--86531775 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
86531736 AAACAAAAAG
86531746 AAAAGAAACAGAGAGA
1 AAAAGAAA-AGAGAGA
86531762 AAAAGAAAAGAGAG
1 AAAAGAAAAGAGAG
86531776 CGTCCAGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.70, C:0.03, G:0.27, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAGAGAGA
Found at i:86536118 original size:430 final size:429
Alignment explanation
Indices: 86535271--86536372 Score: 1302
Period size: 430 Copynumber: 2.5 Consensus size: 429
86535261 GGGTGTTACA
* *
86535271 AAATGGGGTTTAGTTCAA-CATGAAATTAATCATACTCGATTGGGGTTTAAAATTTGATTTGAAC
1 AAATGGGGTTTAGTT-AAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTGAAC
* *
86535335 GTAATTGTGATAGGTGAAAAGGAGAAAGGACTTAAAAAGAATTGAACCAAAAATAAGGAAATGGA
65 GTAATTGTGATAGGTGAAAAGGAGAAAGGATTTAAAGA-AATTGAACCAAAAATAAGGAAATGGA
* * * * *
86535400 AAAAAATGGCAGTAAACTTGAATAACGACTGATGCGTGAAAGAGAAAAGAATTGTTATTCATTCT
129 AAAAAATGGCAGTAAACTTGAATAGCTACTAATGCGTGAAAGAGAAAAGAATTGTT-TTTAATCT
* *
86535465 ATTATAGTGTG-TTTTTCAAATCCACCATACAAGGTAGGCATTTATACTCTTTTCATATGCCAAA
193 ATTATAGTGTGTTTTTTCAAAGCCACCATACAAGGT----ATTTATACTCTTTTCATATACCAAA
* * * * *
86535529 TTTAGCATGATTCCTCCTTAGACTATGCTTAACAACCAACTAAAATCAGTTTTTTTTTCTATCCA
254 TTTAGCATGATTCCTCCTAAGACTATGCCTAACAACCAACTAAAATAAGATTTTTATTCTATCCA
* * * **
86535594 TAGAGTTTGACAAATTCACAATCTATTTTTTAGTCATTCATTAATTCTTCAACTTTTCAAGTTGG
319 TAAAGTTTGAAAAATTCACAATCTATTTTTTAATCAGCCATTAATTCTTCAACTTTTCAAGTTGG
** * ** *
86535659 CCTTTTTTATTGCTTCTTGTTCTAATTTAGCCCAACTGGCTTGG-T
384 CCCCTTTTATTACTTCCCGTTCCAATTTAGCCCAACTGGCTTGGTT
* * * * *
86535704 AAATGGTGTTTAGTTAAGAATGAAATTAATCACACTCTATTGGGGTTTAAAAGTGGATTTCAACG
1 AAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTGAACG
* * *
86535769 TAATTGTGATAGGTGAAAAGGATAAAAGATTTAGCAGAAATTGAACCAAAAATAAGGAAATGGAA
66 TAATTGTGATAGGTGAAAAGGAGAAAGGATTTA-AAGAAATTGAACCAAAAATAAGGAAATGGAA
* * *
86535834 TGAAAATGGCAGTAAACTTGAGTAGCTACTAATGCGTGAAAGAGAAAAGAATTCTTTTTAATCTA
130 -AAAAATGGCAGTAAACTTGAATAGCTACTAATGCGTGAAAGAGAAAAGAATTGTTTTTAATCTA
**
86535899 TTCCAGTGTGTTTTTTCAAAGCCACCATACAAGGTATTTATACTCTTTTCATATACCAAATTTAG
194 TTATAGTGTGTTTTTTCAAAGCCACCATACAAGGTATTTATACTCTTTTCATATACCAAATTTAG
* * * * **
86535964 TATTATTCCTCCTAAGATTATTCCTAACAACCAACTAAAATAAGAATTTTTATT-TATTTATAAA
259 CATGATTCCTCCTAAGACTATGCCTAACAACCAACTAAAATAAG-ATTTTTATTCTATCCATAAA
* * *
86536028 GTTTGAAAAATTCACAATTTGA-TTTTTAATTAGCCGA-TAATTCTGT-AACTTTTCAATTTGGC
323 GTTTGAAAAATTCACAATCT-ATTTTTTAATCAGCC-ATTAATTCT-TCAACTTTTCAAGTTGGC
* *
86536090 CCCTTTTATTACTTCCCGTTCCAATTTAGCCCAATTTGCTTGGTT
385 CCCTTTTATTACTTCCCGTTCCAATTTAGCCCAACTGGCTTGGTT
* * * * * **
86536135 AAATGGGGTTTAGTTGAGCATGAATTTAATCATACTCGATTGAGATTTAATAGTGGATTTGATTG
1 AAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTGAACG
*** * * * * *
86536200 TAACAATGATAAGTGAAAAGGAGAAAGGACTTAAAAAGCAATTGAACAAAAAATAAGGAAATGAA
66 TAATTGTGATAGGTGAAAAGGAGAAAGGA-TT-TAAAGAAATTGAACCAAAAATAAGGAAATGGA
* ** * * *
86536265 AAAAAATTAGCTTTAAACTTGAATAGCTAC-AGATGCGTGAAAGATAAAACAATGGTTTTTAATT
129 AAAAAA-TGGCAGTAAACTTGAATAGCTACTA-ATGCGTGAAAGAGAAAAGAATTGTTTTTAA-T
* *
86536329 TTATTATAGTGTGGTTTTTTCCAAGCCACCATTACAAGGTATTT
191 CTATTATAGTGT-GTTTTTTCAAAGCCACCA-TACAAGGTATTT
86536373 GTAATAGGCC
Statistics
Matches: 566, Mismatches: 87, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
430 157 0.28
431 92 0.16
432 76 0.13
433 138 0.24
434 91 0.16
435 12 0.02
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (429 bp):
AAATGGGGTTTAGTTAAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGGATTTGAACG
TAATTGTGATAGGTGAAAAGGAGAAAGGATTTAAAGAAATTGAACCAAAAATAAGGAAATGGAAA
AAAATGGCAGTAAACTTGAATAGCTACTAATGCGTGAAAGAGAAAAGAATTGTTTTTAATCTATT
ATAGTGTGTTTTTTCAAAGCCACCATACAAGGTATTTATACTCTTTTCATATACCAAATTTAGCA
TGATTCCTCCTAAGACTATGCCTAACAACCAACTAAAATAAGATTTTTATTCTATCCATAAAGTT
TGAAAAATTCACAATCTATTTTTTAATCAGCCATTAATTCTTCAACTTTTCAAGTTGGCCCCTTT
TATTACTTCCCGTTCCAATTTAGCCCAACTGGCTTGGTT
Found at i:86537215 original size:11 final size:11
Alignment explanation
Indices: 86537199--86537223 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
86537189 TCGGTGGCTA
86537199 CGATGGAGCTG
1 CGATGGAGCTG
86537210 CGATGGAGCTG
1 CGATGGAGCTG
86537221 CGA
1 CGA
86537224 CGGCCTGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.20, G:0.44, T:0.16
Consensus pattern (11 bp):
CGATGGAGCTG
Found at i:86537877 original size:20 final size:20
Alignment explanation
Indices: 86537852--86537890 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
86537842 TATTTTTTTA
86537852 TTATTTTTATACTTTCATTT
1 TTATTTTTATACTTTCATTT
* *
86537872 TTATTTTTTTATTTTCATT
1 TTATTTTTATACTTTCATT
86537891 AAATACAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (20 bp):
TTATTTTTATACTTTCATTT
Found at i:86540891 original size:94 final size:94
Alignment explanation
Indices: 86540760--86541427 Score: 709
Period size: 94 Copynumber: 7.1 Consensus size: 94
86540750 AGTCCACCTG
* * * *
86540760 AAGTTGTAGTGGGTTGGAATAAAGCTACAATGGCGAATCTTATCTCCCTGAAGTTGCAGTGAAAC
1 AAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGAAGC
* *
86540825 AAGGTGAAGCTATAAATCCTATACCCCTA
66 AAGATGAAGCTACAAATCCTATACCCCTA
* * * *
86540854 AAGTTACAGTGGGTTGGAATGAAGTTATC-ATAACGAATCTTATCAT-CCTGAAGTTGCAGTGGA
1 AAGTTGCAGTGGGTTGGAATGAAGCTA-CAATAGCGAATCTTATC-TCCCTGAAGTTGCAGTGAA
* * * *
86540917 GCAAGATGAAGCTACAAATCCAATACTCTTG
64 GCAAGATGAAGCTACAAATCCTATACCCCTA
* * * * ** *
86540948 AAGTTGCAGTGGGTTGGAATGAAACTACTATAGCGACTCTTATCTCACTGAAGTTATAGTGGAGC
1 AAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGAAGC
*
86541013 AAGATGAAGCTACAAATCCTATACCCCTG
66 AAGATGAAGCTACAAATCCTATACCCCTA
* * * * * * * * *
86541042 AAGTTACAATGGATTGGAATGAAGCTACCATAGCAAATCTTATCTTCTTGAAGTTGCAATGAAGT
1 AAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGAAGC
*
86541107 AAGATGAAGCTACAAATCCTATACCCCTG
66 AAGATGAAGCTACAAATCCTATACCCCTA
* * * ** * *
86541136 AAGTTGCAATGGGTTGGAATAAAGCTACAATAGCAAATCTTATCTTGCTAAAGTTGTAGT-AGAG
1 AAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGA-AG
* * *
86541200 CAAGATAAAGCTACAAATCCTACAACCCTA
65 CAAGATGAAGCTACAAATCCTATACCCCTA
* * ** * *
86541230 AAGTTGTAGTGGGTTGGAATGAAGCTACAATAGC-ACATTTTATGACCTTGAAGTTGCAGTGGAG
1 AAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGA-ATCTTATCTCCCTGAAGTTGCAGTGAAG
**
86541294 CAAGATGAAGCTACAAATCCTATACATCTA
65 CAAGATGAAGCTACAAATCCTATACCCCTA
* * * *
86541324 AAGTTGCAGTAGGTTGGAATGAAGCTACAATAGCGAATCTTATCTTCCTAAAGTTGTAGTAGAA-
1 AAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAGT-GAAG
* * * * *
86541388 AAACATGAAACTTCAAATCGTAT-CCCTCTA
65 CAAGATGAAGCTACAAATCCTATACCC-CTA
86541418 AAGTTGCAGT
1 AAGTTGCAGT
86541428 TGTAACACCC
Statistics
Matches: 476, Mismatches: 88, Indels: 20
0.82 0.15 0.03
Matches are distributed among these distances:
93 5 0.01
94 466 0.98
95 5 0.01
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (94 bp):
AAGTTGCAGTGGGTTGGAATGAAGCTACAATAGCGAATCTTATCTCCCTGAAGTTGCAGTGAAGC
AAGATGAAGCTACAAATCCTATACCCCTA
Found at i:86541064 original size:44 final size:44
Alignment explanation
Indices: 86541016--86541165 Score: 133
Period size: 44 Copynumber: 3.3 Consensus size: 44
86541006 GTGGAGCAAG
*
86541016 ATGAAGCTACAAATCCTATACCCCTGAAGTTACAATGGATTGGA
1 ATGAAGCTACAAATCCTATACCCCTGAAGTTGCAATGGATTGGA
* * * * * *
86541060 ATGAAGCTACCATAGCAAATCTTAT-CTTCTTGAAGTTGCAATGAAGT-AA
1 ATGAAG----C-TA-CAAATCCTATAC-CCCTGAAGTTGCAATGGATTGGA
*
86541109 GATGAAGCTACAAATCCTATACCCCTGAAGTTGCAATGGGTTGGA
1 -ATGAAGCTACAAATCCTATACCCCTGAAGTTGCAATGGATTGGA
*
86541154 ATAAAGCTACAA
1 ATGAAGCTACAA
86541166 TAGCAAATCT
Statistics
Matches: 81, Mismatches: 15, Indels: 20
0.70 0.13 0.17
Matches are distributed among these distances:
44 41 0.51
45 4 0.05
46 1 0.01
48 1 0.01
49 4 0.05
50 30 0.37
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (44 bp):
ATGAAGCTACAAATCCTATACCCCTGAAGTTGCAATGGATTGGA
Found at i:86541102 original size:50 final size:50
Alignment explanation
Indices: 86541038--86541191 Score: 126
Period size: 50 Copynumber: 3.2 Consensus size: 50
86541028 ATCCTATACC
*
86541038 CCTGAAGTTACAATGGATTGGAATGAAGCTACCATAGCAAATCTTATCTT
1 CCTGAAGTTGCAATGGATTGGAATGAAGCTACCATAGCAAATCTTATCTT
* * * * * *
86541088 CTTGAAGTTGCAATGAAGT-AAGATGAAG----C-TA-CAAATCCTATAC-C
1 CCTGAAGTTGCAATGGATTGGA-ATGAAGCTACCATAGCAAATCTTAT-CTT
* * *
86541132 CCTGAAGTTGCAATGGGTTGGAATAAAGCTACAATAGCAAATCTTATCTT
1 CCTGAAGTTGCAATGGATTGGAATGAAGCTACCATAGCAAATCTTATCTT
* *
86541182 GCTAAAGTTG
1 CCTGAAGTTG
86541192 TAGTAGAGCA
Statistics
Matches: 76, Mismatches: 18, Indels: 20
0.67 0.16 0.18
Matches are distributed among these distances:
44 29 0.38
45 4 0.05
46 1 0.01
49 4 0.05
50 38 0.50
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (50 bp):
CCTGAAGTTGCAATGGATTGGAATGAAGCTACCATAGCAAATCTTATCTT
Found at i:86542564 original size:18 final size:17
Alignment explanation
Indices: 86542537--86542572 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
86542527 ACCCATGTGG
86542537 CCTGCCCGTGTGGACCCA
1 CCTGCCCGTGTGG-CCCA
*
86542555 CCTGCTCGTGTGGCCCA
1 CCTGCCCGTGTGGCCCA
86542572 C
1 C
86542573 ACGGCCCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.08, C:0.44, G:0.28, T:0.19
Consensus pattern (17 bp):
CCTGCCCGTGTGGCCCA
Found at i:86547811 original size:15 final size:15
Alignment explanation
Indices: 86547791--86547820 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86547781 CATTTTATTT
*
86547791 ATATTAGGATAATTA
1 ATATTAAGATAATTA
86547806 ATATTAAGATAATTA
1 ATATTAAGATAATTA
86547821 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:86549382 original size:13 final size:13
Alignment explanation
Indices: 86549366--86549390 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86549356 CATAAATAAT
86549366 TTCTTTAAAACCA
1 TTCTTTAAAACCA
86549379 TTCTTTAAAACC
1 TTCTTTAAAACC
86549391 CAAATCCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (13 bp):
TTCTTTAAAACCA
Found at i:86550832 original size:23 final size:23
Alignment explanation
Indices: 86550802--86550846 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
86550792 GTCCGAGTAG
86550802 TGTAGGTCTATTTAACATATTTA
1 TGTAGGTCTATTTAACATATTTA
86550825 TGTAGGTCTATTTAACATATTT
1 TGTAGGTCTATTTAACATATTT
86550847 GTCCAACACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.29, C:0.09, G:0.13, T:0.49
Consensus pattern (23 bp):
TGTAGGTCTATTTAACATATTTA
Found at i:86555526 original size:54 final size:53
Alignment explanation
Indices: 86555468--86555589 Score: 122
Period size: 54 Copynumber: 2.3 Consensus size: 53
86555458 TAGTATTATA
* * *
86555468 TATTTTTATTTTTTAATCCATA-TAACAATAATTATATTAAGAATGTTATTAAAT
1 TATTTTTATTTTTAAAT-CATATTAACAATAATTATATTAA-AATGTGATTAAAC
* * * * *
86555522 TATTTTT-TTATTAAATTATATTTAATAATAATTATGTTAAAATGTGGTTAAAC
1 TATTTTTATTTTTAAATCATA-TTAACAATAATTATATTAAAATGTGATTAAAC
86555575 TATTTATTATTTTTA
1 TATTT-TTATTTTTA
86555590 TTAAATTATT
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
52 3 0.05
53 22 0.40
54 25 0.45
55 5 0.09
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (53 bp):
TATTTTTATTTTTAAATCATATTAACAATAATTATATTAAAATGTGATTAAAC
Found at i:86555806 original size:46 final size:44
Alignment explanation
Indices: 86555715--86555808 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
86555705 ATTACAACAT
*
86555715 CATTCCATTAAACCAAACACAAGAATATTATTACAGTTCTATTC
1 CATTCCATTAAACCAAACACAAGAATATTATTACAGCTCTATTC
* ***
86555759 CATTCCATTCAACCAAACAGTTGAATTACTTATTACAGCTCTATTC
1 CATTCCATTAAACCAAACACAAGAA-TA-TTATTACAGCTCTATTC
86555805 CATT
1 CATT
86555809 ACAGCTCTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 21 0.49
45 2 0.05
46 20 0.47
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (44 bp):
CATTCCATTAAACCAAACACAAGAATATTATTACAGCTCTATTC
Found at i:86555811 original size:16 final size:16
Alignment explanation
Indices: 86555790--86555844 Score: 92
Period size: 16 Copynumber: 3.4 Consensus size: 16
86555780 TGAATTACTT
86555790 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
86555806 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
*
86555822 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
86555838 ATTACAG
1 ATTACAG
86555845 TGAACCAAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:86559413 original size:40 final size:41
Alignment explanation
Indices: 86559268--86559446 Score: 147
Period size: 41 Copynumber: 4.4 Consensus size: 41
86559258 TACTCGATAT
** * * * *
86559268 CTCGCACACTAAGTGCTAAAGCATAGTCGAAGCTAT-TATAAT
1 CTCGCACACTAAGTGCTCTA-TATAGCCGAAGCTATCT-CAAC
*
86559310 CTCGCACACTAAGTGCT-TTTCATAGCCGAAGCTATCTCAAC
1 CTCGCACACTAAGTGCTCTAT-ATAGCCGAAGCTATCTCAAC
* * *
86559351 CTCACACACTAAGCG-TCGTATATAGCCGAAGCTAT-TCTGA-
1 CTCGCACACTAAGTGCTC-TATATAGCCGAAGCTATCTC-AAC
*
86559391 CTCGCACACTAAGTGCTCTATATAGCCAAAGCTATCTCGAA-
1 CTCGCACACTAAGTGCTCTATATAGCCGAAGCTATCTC-AAC
*
86559432 -ACGCACACTAAGTGC
1 CTCGCACACTAAGTGC
86559447 CAATCTTAGT
Statistics
Matches: 114, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
40 46 0.40
41 48 0.42
42 20 0.18
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (41 bp):
CTCGCACACTAAGTGCTCTATATAGCCGAAGCTATCTCAAC
Found at i:86560787 original size:94 final size:94
Alignment explanation
Indices: 86560565--86560817 Score: 267
Period size: 94 Copynumber: 2.7 Consensus size: 94
86560555 GGCTGTTACA
*
86560565 GCAGTGGGTTGGAATGAAGCTACAATAGCAAATCTT-TTCTCCCTAAAGTTGCAGTGGAGCAAGA
1 GCAGTGGGTTGGAATGAAACTACAATAGCAAATCTTATT-TCCCTAAAGTTGCAGTGGAGCAAGA
* * *
86560629 TGAAGCTACAAGTCATATGCCCTTAAAGTT
65 TAAAGCTACAAATCATATACCCTTAAAGTT
* ** * ** * *
86560659 GCAGTAGGTTGGAACAAAACTATAATAGTGAATCTTATTTCCCTGAAGTTGTAGTGGAGCAAGAT
1 GCAGTGGGTTGGAATGAAACTACAATAGCAAATCTTATTTCCCTAAAGTTGCAGTGGAGCAAGAT
* *
86560724 AAAGCTACAAATCCTATACCAC-TGAAGTT
66 AAAGCTACAAATCATATACC-CTTAAAGTT
* * * * * * * * *
86560753 TCAGTGGGTTAGAATGAAATTACAACAACAAATCTTATCTCCTTAAAGTTGCAATTGAGCAAGAT
1 GCAGTGGGTTGGAATGAAACTACAATAGCAAATCTTATTTCCCTAAAGTTGCAGTGGAGCAAGAT
86560818 GAAGATGTGA
Statistics
Matches: 126, Mismatches: 31, Indels: 4
0.78 0.19 0.02
Matches are distributed among these distances:
94 123 0.98
95 3 0.02
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.28
Consensus pattern (94 bp):
GCAGTGGGTTGGAATGAAACTACAATAGCAAATCTTATTTCCCTAAAGTTGCAGTGGAGCAAGAT
AAAGCTACAAATCATATACCCTTAAAGTT
Found at i:86562988 original size:26 final size:25
Alignment explanation
Indices: 86562959--86563063 Score: 176
Period size: 26 Copynumber: 4.2 Consensus size: 25
86562949 TGGTACAAAT
86562959 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
*
86562985 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
86563011 TGATAAT-GTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
86563035 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
86563060 TGAT
1 TGAT
86563064 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 2, Indels: 5
0.91 0.02 0.06
Matches are distributed among these distances:
24 22 0.29
25 24 0.32
26 29 0.39
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:86563030 original size:50 final size:50
Alignment explanation
Indices: 86562959--86563063 Score: 176
Period size: 50 Copynumber: 2.1 Consensus size: 50
86562949 TGGTACAAAT
86562959 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGG-TTAGGTAAATATTCCA
*
86563011 TGATAAT-GTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATATTCCA
86563060 TGAT
1 TGAT
86563064 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
49 19 0.37
50 26 0.50
52 7 0.13
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (50 bp):
TGATAATGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATATTCCA
Found at i:86564691 original size:27 final size:26
Alignment explanation
Indices: 86564648--86564801 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 26
86564638 AGGAAGCGTC
*
86564648 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
*
86564675 CTGGTGGCTCTGTCAC-ATA--T-AT
1 CTGGTGGCTCTGCCACAATATCTGAT
** *
86564697 CT-GTCCACTATGCCACAATTATCTGAT
1 CTGGT-GGCTCTGCCACAA-TATCTGAT
*
86564724 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGAT
86564751 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG-AT
* *
86564778 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
86564802 GCAGCCTCGC
Statistics
Matches: 104, Mismatches: 13, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
21 2 0.02
22 11 0.11
23 2 0.02
24 2 0.02
25 2 0.02
26 10 0.10
27 72 0.69
28 3 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:86564727 original size:49 final size:49
Alignment explanation
Indices: 86564655--86564749 Score: 181
Period size: 49 Copynumber: 1.9 Consensus size: 49
86564645 GTCCTGGTGG
*
86564655 CTATGCCACAATTATCTGATCTGGTGGCTCTGTCACATATATCTGTCCA
1 CTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCA
86564704 CTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGT
1 CTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGT
86564750 TCTGGTGGCT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (49 bp):
CTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCA
Found at i:86568509 original size:432 final size:428
Alignment explanation
Indices: 86567402--86568721 Score: 1723
Period size: 432 Copynumber: 3.0 Consensus size: 428
86567392 GGTTTCGACA
* * *
86567402 GTATTTATACACTTTTAATATGTCAAATTTAGCATGATTCTTCCTAAGATTATATGCCTAAAAAC
1 GTATTTATACACTTTTCATATGTCAAATTTAGCAT-ATTCCTCCTAAGA-T-TATGCCTAACAAC
** *
86567467 CAACTAAAATCAGA-TTTTTTT-TATTCACAGAGTTTGACAAATTCACAATTTGATTTTTAATCA
63 CAACTAAAATCAGATTTTTTTTCTATTCATGGAGTTTGA-AAATTCACAATCTGATTTTTAATCA
* * *
86567530 ACCACTAATTCTACAACTTTTCAATTTTGCCCCTTTTATTGCTTCCCGTTCCAATTTAGCCCAAC
127 ACCACTTATTCTACAACTTTTCAATTTTGCCCATTTTATTGCTTCCCGTTCCAATTTAGCCCAAT
*
86567595 TTGCTTGGCTAAATGAGGTTTAGTTGAGCATGAAATTAATTATACTCGATTGTGGTTTAAAAGTG
192 TTGCTTGGCTAAATG-GGTTTAGTTGAGCATGAAATTAATCATACTCGATTG-GGTTTAAAAGTG
* * * *
86567660 GATTTAAATGTAATGGTGATAAGTGAAAAAGGAAAAGGAGAAAGGACTTAAAAAACAATTAAACC
255 GATTTAAACGTAATGGTGAT-AG-G-----TGAAAAGGAGAAAGGACTTAAAAAGCAATTGAACC
*
86567725 AAAAATAAGGAAATGGGAAAAAATGGCAGTAAACTTGAATAGCTACTAATGCATGAAAGAGAAAA
313 AAAAATAAGGAAAT-GGAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCATGAAAGAGAAAA
* * *
86567790 GAATTGTTTTTAATTCTATTTCAGTGTGTTTTTTCCAAAACACCATTAAAAG
377 GAATTGTTTTTAATTCTATTCCAGTGTGTTTTTTCCAAGACACCATTACAAG
* * * * * **
86567842 GTATTTACAAATTTTTCATATGCCAAATTTAGCATGATTACTTATAAGATTATGCCTAACAACCA
1 GTATTTATACACTTTTCATATGTCAAATTTAGCAT-ATTCCTCCTAAGATTATGCCTAACAACCA
* * *
86567907 ACAAAAATCAGATCTTTTTTCTATTCATGGAGTTTGAAAAATTCACAATCTGATTTTTAATCAGC
65 ACTAAAATCAGATTTTTTTTCTATTCATGGAGTTTG-AAAATTCACAATCTGATTTTTAATCAAC
* * * * * * *
86567972 CAC-TAGTT-AAGAAACCTTTCAATTTAGCTCATTTTATTGCTTCTCGTTTCAATTTAGCCCAAT
129 CACTTA-TTCTA-CAACTTTTCAATTTTGCCCATTTTATTGCTTCCCGTTCCAATTTAGCCCAAT
* * * *
86568035 TTGCTTAGCTAAATGGGGTTTAGTTGAGCATGAAATTAATCATGCTCGATAGGGATTTAAAATTG
192 TTGCTTGGCTAAAT-GGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGG-TTTAAAAGTG
* *
86568100 GATTTCAACGTAATGGTGATAGGTGAAAAGGAGAAAGGACGTAAAAAGCAATTGAACCAAAAATA
255 GATTTAAACGTAATGGTGATAGGTGAAAAGGAGAAAGGACTTAAAAAGCAATTGAACCAAAAATA
*
86568165 AGGAAATGGAAAGAAATGGCAGTAAACTTGAATAGCTACTGATGCATTAAAGAGAAAAGAATTGT
320 AGGAAATGGAAA-AAATGGCAGTAAACTTGAATAGCTACTGATGCATGAAAGAGAAAAGAATTGT
* * * *
86568230 TTTTCATTCTATTCCAATGTGTTTTTTCCAAGTCATCATTACAAG
384 TTTTAATTCTATTCCAGTGTGTTTTTTCCAAGACACCATTACAAG
* * * *
86568275 GTATTTATACACTTTTCATCTGTCAAAATTAGCACT-TTCCTCCTAAGATTATGCTTAACAGCCA
1 GTATTTATACACTTTTCATATGTCAAATTTAGCA-TATTCCTCCTAAGATTATGCCTAACAACCA
* * * * *
86568339 CCTAAAATCATATTTTTTTTCTATTCATGGAGTTTGAAAATTTTACAATGTAATTTTTAATCAAC
65 ACTAAAATCAGATTTTTTTTCTATTCATGGAGTTTGAAAA-TTCACAATCTGATTTTTAATCAAC
* *
86568404 CACTTATTCTACAACTTTTCAATTTTGCCCTTTTTATTGCTCCCCGTTCCAATTTAGCCCAATTT
129 CACTTATTCTACAACTTTTCAATTTTGCCCATTTTATTGCTTCCCGTTCCAATTTAGCCCAATTT
* * *
86568469 TCTTGGCTAAATAGGGTTTAGTTGAGCATGAAACTAATCATACTCAATTGGGGTTTAAAAGTGGA
194 GCTTGGCTAAAT-GGGTTTAGTTGAGCATGAAATTAATCATACTCGATT-GGGTTTAAAAGTGGA
* * * *
86568534 TTTGAACGTAACGGTGATAAGTGAAAAGGATAAAGGACTTAAAAAGCAATTGAACCAAAAATAAG
257 TTTAAACGTAATGGTGATAGGTGAAAAGGAGAAAGGACTTAAAAAGCAATTGAACCAAAAATAAG
* ** * * *
86568599 AAAATGGAAAAAATGGCAGTAAACTTGAATAGCTACTGATGTGTGAAAGAGATAACAATTCTTTT
322 GAAATGGAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCATGAAAGAGAAAAGAATTGTTTT
* * *
86568664 TAATTATATTCCAGTGTGTTTTTTCGAAGCCACCATTACAAG
387 TAATTCTATTCCAGTGTGTTTTTTCCAAGACACCATTACAAG
86568706 GTATTTATACACTTTT
1 GTATTTATACACTTTT
86568722 TGAGAAAAAT
Statistics
Matches: 767, Mismatches: 100, Indels: 35
0.85 0.11 0.04
Matches are distributed among these distances:
431 105 0.14
432 253 0.33
433 167 0.22
434 1 0.00
438 26 0.03
439 13 0.02
440 200 0.26
441 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (428 bp):
GTATTTATACACTTTTCATATGTCAAATTTAGCATATTCCTCCTAAGATTATGCCTAACAACCAA
CTAAAATCAGATTTTTTTTCTATTCATGGAGTTTGAAAATTCACAATCTGATTTTTAATCAACCA
CTTATTCTACAACTTTTCAATTTTGCCCATTTTATTGCTTCCCGTTCCAATTTAGCCCAATTTGC
TTGGCTAAATGGGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGTTTAAAAGTGGATTTA
AACGTAATGGTGATAGGTGAAAAGGAGAAAGGACTTAAAAAGCAATTGAACCAAAAATAAGGAAA
TGGAAAAAATGGCAGTAAACTTGAATAGCTACTGATGCATGAAAGAGAAAAGAATTGTTTTTAAT
TCTATTCCAGTGTGTTTTTTCCAAGACACCATTACAAG
Found at i:86574470 original size:433 final size:428
Alignment explanation
Indices: 86573506--86574988 Score: 1763
Period size: 432 Copynumber: 3.4 Consensus size: 428
86573496 CTTAATTCTA
* * *
86573506 ACACTTTTTATATACCAAATTTAGCATGATTCCTCCTAAGATTATGCCTAACAACCAATTAAAAT
1 ACACTTTTCATATACC-AATTTAGCATGATTCCTCCTAAGATTATGCCTAATAACCAACTAAAAT
* * * * *
86573571 AAGATTTTTTTCTATTCATAGAGTTTAACAAATTCACAATCGGATTTTTAATCA-ACC--A--CT
65 CAGATTTTTTTCTATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCCTAATTAT
* * * * * *
86573631 GCAACTTTTCAATTTGGCTGC--TTTATTTCTTCCCGTTCCAAGTTAGCCAAATTTGCTTGGCTA
130 GAAACTTTTCAATTTGGC-CCATTTTATTGCTTCTCGTTCCAATTTAGCCCAATTTGCTTGGCTA
*
86573694 AATGCGATTTAGTTGAGAATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGAATTTGGAAGT
194 AATGCG-TTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGAATTT-GAAGT
* * * * * * * * *
86573759 AAAGGTGATAAGTGAAAAAGAGAAA-AGACTTAAAAAGCAATTGGACAAAAAGTAAGAAAATGGT
257 AATGGTGATAGGTGAAAATGAGAAAGA-ACTTAAAAGGCAATTGAACAAAAAATAAGAAACTAGA
* * * * * **
86573823 AAAAAATGACAATAAAC-CTGAATAGCTACTGATGCATGAAAGAGAAAAGAGTTATTTTTAATTC
321 AAAAAATGGCAGTAAACTC-GAATAACTACTGATGCATGAAAAAGAAAAGAATTGCTTTTAATTC
* ** *
86573887 TATTATAGTATGTTTTTTTGAAGCCACCATTACAAGGTATTGAT
385 TATTATAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTAT
* * * *
86573931 AGACTTTCCATATGA-CATATTGAGCATGATTCCTCCTAAGATTATGCCTAATAATCAACTAAAA
1 ACACTTTTCATAT-ACCA-ATTTAGCATGATTCCTCCTAAGATTATGCCTAATAACCAACTAAAA
**
86573995 TTGGATTTTTTTCTATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCACTAATT
64 TCAGATTTTTTTCTATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCC-CTAATT
* *
86574060 ATGAAAATTTTCAATTTGGTCCATTTTATTGCTTC-CTGTTCCAATTTAGCCCAATTTGCTTGGC
128 ATGAAACTTTTCAATTTGGCCCATTTTATTGCTTCTC-GTTCCAATTTAGCCCAATTTGCTTGGC
*
86574124 TAAATGTCGTTTAGTTGAGCATGAAATTAATCATACTTGATTGGGGTTTAAAAGTGAATTTGAAT
192 TAAATG-CGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGAATTTGAA-
* * * *
86574189 GTAATGATGATGGGTGAAAATGAGAAAGAACTTAAAAGGTAATTGAACAAAAAATAAGGAACTAG
255 GTAATGGTGATAGGTGAAAATGAGAAAGAACTTAAAAGGCAATTGAACAAAAAATAAGAAACTAG
* * * * *
86574254 AAAAAAATTGGCAGTAAACTCGAATATCTACAGATGCGTGAAAAATAAAAAAATTGCTTTTAATT
320 AAAAAAA-TGGCAGTAAACTCGAATAACTACTGATGCATGAAAAAGAAAAGAATTGCTTTTAATT
86574319 CTATTATAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTAT
384 CTATTATAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTAT
* *
86574364 AC-CATTTTCATATATCCAATTTAGCATGATTCCTCCTAAGGTTACGCCTAATAACCAAC-AAAA
1 ACAC-TTTTCATATA-CCAATTTAGCATGATTCCTCCTAAGATTATGCCTAATAACCAACTAAAA
*
86574427 TCACATTTGTTTTCTATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCCTTAAT
64 TCAGATTT-TTTTCTATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCC-TAAT
* * * **
86574492 TATGCAACTTTTCAATTTGGCCCCTTTTATTGCTTCTCATTCCAA-TTAGCCCAATTTGCTTAAC
127 TATGAAACTTTTCAATTTGGCCCATTTTATTGCTTCTCGTTCCAATTTAGCCCAATTTGCTTGGC
* * ** *
86574556 TAAATGGGTTTAGTTGAGCATGAAATTAATCATACTCAATTGGGACTTAAAAGTGGATTTGAACG
192 TAAATGCGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGAATTTGAA-G
* *
86574621 TAATGGTGATAGGTGAAAATGAGAGAAG-ACTTGAAAGGCAATTGAACCAAAAATAAGAAACTAG
256 TAATGGTGATAGGTGAAAATGAGA-AAGAACTTAAAAGGCAATTGAACAAAAAATAAGAAACTAG
* *
86574685 AAAAAAAAATGGCAGTAAACTTGAATAACTATTGATGCATGAAAAAGAAAAGAATTGCTTTTAAT
320 --AAAAAAATGGCAGTAAACTCGAATAACTACTGATGCATGAAAAAGAAAAGAATTGCTTTTAAT
* * * *
86574750 TTTATTTTAGTGTGCTTTTTCCAAGCCACCATTTCAAGGTATTTAT
383 TCTATTATAGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTAT
* *** * * * * **
86574796 ACATTTTTCATATGTGAAATTTAGCATGATTCTTCATAAGATTATACCTAATGATTAACTAAAAT
1 ACACTTTTCATAT-ACCAATTTAGCATGATTCCTCCTAAGATTATGCCTAATAACCAACTAAAAT
* * * * ** *
86574861 CAGATTTTTTTTTCTATTCATGGAGTTTGATAAGTTCACAATCTAATAATTAATCAGTCCTTAAT
65 CAGA--TTTTTTTCTATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAG-CCCTAAT
* * * ** *
86574926 TCTGAAACTTTTCAATTTGACCCATTTTATTGCTTTTCGTTCCAATTTTTCCCAATTTTCTTG
127 TATGAAACTTTTCAATTTGGCCCATTTTATTGCTTCTCGTTCCAATTTAGCCCAATTTGCTTG
86574989 TTTATTTGAA
Statistics
Matches: 906, Mismatches: 120, Indels: 54
0.84 0.11 0.05
Matches are distributed among these distances:
424 1 0.00
425 104 0.11
426 2 0.00
427 1 0.00
429 1 0.00
430 1 0.00
431 126 0.14
432 322 0.36
433 241 0.27
434 89 0.10
435 18 0.02
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (428 bp):
ACACTTTTCATATACCAATTTAGCATGATTCCTCCTAAGATTATGCCTAATAACCAACTAAAATC
AGATTTTTTTCTATTCATAGAGTTTGACAAATTCACAATCTGATTTTTAATCAGCCCTAATTATG
AAACTTTTCAATTTGGCCCATTTTATTGCTTCTCGTTCCAATTTAGCCCAATTTGCTTGGCTAAA
TGCGTTTAGTTGAGCATGAAATTAATCATACTCGATTGGGGTTTAAAAGTGAATTTGAAGTAATG
GTGATAGGTGAAAATGAGAAAGAACTTAAAAGGCAATTGAACAAAAAATAAGAAACTAGAAAAAA
ATGGCAGTAAACTCGAATAACTACTGATGCATGAAAAAGAAAAGAATTGCTTTTAATTCTATTAT
AGTGTGTTTTTTCCAAGCCACCATTACAAGGTATTTAT
Found at i:86582076 original size:28 final size:28
Alignment explanation
Indices: 86582038--86582095 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
86582028 GACTTATTTA
*
86582038 AATTCTAGTTTTTCACATCTAACCTATT
1 AATTCTAGTTTTTCACATCAAACCTATT
86582066 AATTCTAGTTTTTCACATCAAACCTATT
1 AATTCTAGTTTTTCACATCAAACCTATT
86582094 AA
1 AA
86582096 CTAAGTCTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.33, C:0.21, G:0.03, T:0.43
Consensus pattern (28 bp):
AATTCTAGTTTTTCACATCAAACCTATT
Found at i:86583001 original size:13 final size:13
Alignment explanation
Indices: 86582969--86583007 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
86582959 ATGTTTAAAA
86582969 ACTTTTATTTATT
1 ACTTTTATTTATT
*
86582982 A-TTTTATTTTTT
1 ACTTTTATTTATT
86582994 ACTTTTATTCTATT
1 ACTTTTATT-TATT
86583008 TTAAGACTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 11 0.50
13 8 0.36
14 3 0.14
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (13 bp):
ACTTTTATTTATT
Found at i:86592201 original size:28 final size:29
Alignment explanation
Indices: 86592129--86592206 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
86592119 TTCAAAAAAA
* *
86592129 TAAAATTGCATTTTGACCCCTAAACTTTTC
1 TAAAATTACATTTT-AACCCTAAACTTTTC
*
86592159 TTAAATTACATTTTAACCCTAAA-TTTTC
1 TAAAATTACATTTTAACCCTAAACTTTTC
86592187 TAAAAATTACA-TTTAACCCT
1 T-AAAATTACATTTTAACCCT
86592207 TGAAGTTTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 15 0.35
29 16 0.37
30 12 0.28
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.41
Consensus pattern (29 bp):
TAAAATTACATTTTAACCCTAAACTTTTC
Found at i:86592943 original size:35 final size:35
Alignment explanation
Indices: 86592869--86592944 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
86592859 GGGTGATATG
* *
86592869 TTAAGTTAGTGGGTTGAGTTAGTTGTGTTGGATTA
1 TTAAGTTAGTGGGCTGAGTTAGTTGTGTTGGAGTA
*
86592904 TTAAGTTAGTGGGCTGAGGTTGGTTTGTGTTGG-GT-
1 TTAAGTTAGTGGGCTGA-GTTAG-TTGTGTTGGAGTA
86592939 TTAAGT
1 TTAAGT
86592945 AATTTGGATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 22 0.61
36 5 0.14
37 9 0.25
ACGTcount: A:0.17, C:0.01, G:0.37, T:0.45
Consensus pattern (35 bp):
TTAAGTTAGTGGGCTGAGTTAGTTGTGTTGGAGTA
Found at i:86593274 original size:17 final size:17
Alignment explanation
Indices: 86593216--86593276 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
86593206 TCCGAATTTA
86593216 ATATATATATTTT-T--
1 ATATATATATTTTGTAC
*
86593230 ATA-ACTATATTATGTAC
1 ATATA-TATATTTTGTAC
86593247 ATATATATATTTTGTAC
1 ATATATATATTTTGTAC
86593264 ATATCAT-TATTTT
1 ATAT-ATATATTTT
86593277 ATATTATTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
13 1 0.03
14 10 0.26
15 1 0.03
17 24 0.62
18 3 0.08
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (17 bp):
ATATATATATTTTGTAC
Found at i:86605491 original size:13 final size:13
Alignment explanation
Indices: 86605473--86605510 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
86605463 CACGCTGAGG
86605473 TGTTTTCAAAATC
1 TGTTTTCAAAATC
86605486 TGTTTTTCAAAATC
1 TG-TTTTCAAAATC
*
86605500 TATTTTCAAAA
1 TGTTTTCAAAA
86605511 ATCAACTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.34, C:0.13, G:0.05, T:0.47
Consensus pattern (13 bp):
TGTTTTCAAAATC
Found at i:86605567 original size:87 final size:80
Alignment explanation
Indices: 86605415--86605645 Score: 251
Period size: 75 Copynumber: 2.9 Consensus size: 80
86605405 TTTATTTCTG
* * * * *
86605415 TTTTCAAAAAACTCTACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTGTTTT
1 TTTTC-AAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGATGAGGTATTTT
86605479 CAAAATCTGT-TTTTCAAAATCTA
64 CAAAATCTGTCTTTT----A---A
*
86605502 TTTTCAAAAATCAACTCATATTGCGAGGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTTCAAAAATCAACTCATATTGCGA-GAGGTGAGTTGAGCCTCAAGACACGATGAGGTATTTTC
**
86605567 AATTTCTGTCTTTTAA
65 AAAATCTGTCTTTTAA
86605583 -----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGATGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGATGAGGTATTTTCA
86605643 AAA
66 AAA
86605646 AAATCAACTC
Statistics
Matches: 131, Mismatches: 10, Indels: 18
0.82 0.06 0.11
Matches are distributed among these distances:
75 39 0.30
76 21 0.16
81 1 0.01
84 1 0.01
85 15 0.11
86 22 0.17
87 28 0.21
88 4 0.03
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (80 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGATGAGGTATTTTCA
AAATCTGTCTTTTAA
Found at i:86605647 original size:61 final size:62
Alignment explanation
Indices: 86605577--86605705 Score: 208
Period size: 61 Copynumber: 2.1 Consensus size: 62
86605567 AATTTCTGTC
*
86605577 TTTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGATGAGGT-A
1 TTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGATGAGGTAA
* * *
86605637 TTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACATGCTGCGGTAA
1 TTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGATGAGGTAA
86605699 TTTTCAA
1 TTTTCAA
86605706 TTTCTGTCAT
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
60 4 0.06
61 51 0.81
62 8 0.13
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (62 bp):
TTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGATGAGGTAA
Found at i:86605944 original size:76 final size:75
Alignment explanation
Indices: 86605637--86605904 Score: 360
Period size: 76 Copynumber: 3.5 Consensus size: 75
86605627 CGATGAGGTA
* * * *
86605637 TTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACATGCTGCGGTAATTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTT
86605702 TCAATTTCTGT
65 TCAATTTCTGT
** * *
86605713 CATTCAGAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTAATT
1 TTTTCA-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
*
86605778 TCAATTTTTGT
65 TCAATTTCTGT
* * * * *
86605789 TTGTC-AAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAACCTCAGGTCACACGCTGAGGTGTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATT
86605853 TTCAATTTCTGT
64 TTCAATTTCTGT
86605865 TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
86605905 TCTCGGGCCA
Statistics
Matches: 166, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
74 39 0.23
76 78 0.47
77 49 0.30
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (75 bp):
TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
CAATTTCTGT
Found at i:86606112 original size:179 final size:178
Alignment explanation
Indices: 86605792--86606123 Score: 402
Period size: 179 Copynumber: 1.9 Consensus size: 178
86605782 TTTTTGTTTG
* * * * *
86605792 TCAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAACCTCAGGTCACACGCTGAGGTGTTTTCA
1 TCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAACCCCAGGT-ACACGATGAGGTATTTCCA
* * **
86605857 ATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACATGTCG
65 ATTTATGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGCCACATGTCG
*
86605922 AGGTCTTTTCAAATTCTATTTTTAATTTCTTTTTTTTAATTTTCGTATT
130 AGGTATTTTCAAATTCTATTTTTAATTTCTTTTTTTTAATTTTCGTATT
* *
86605971 TCAAAAAAT-AGCTCATATTGCGAGAGGTGAGTTGAACCCCAGGT-CACGATGAGGTATTTCCAA
1 TCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAACCCCAGGTACACGATGAGGTATTTCCAA
**** * *
86606034 TTTATGTTTTTTTTTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAATCACGCAT
66 TTTATG---TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AAGC-CACAT
* *
86606099 -T-GAGGTATTTTCAATTTCTGTTTTT
126 GTCGAGGTATTTTCAAATTCTATTTTT
86606124 CAAAAAAATC
Statistics
Matches: 128, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
176 21 0.16
178 31 0.24
179 70 0.55
180 2 0.02
181 4 0.03
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.38
Consensus pattern (178 bp):
TCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAACCCCAGGTACACGATGAGGTATTTCCAA
TTTATGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGCCACATGTCGA
GGTATTTTCAAATTCTATTTTTAATTTCTTTTTTTTAATTTTCGTATT
Found at i:86606123 original size:77 final size:76
Alignment explanation
Indices: 86605974--86606236 Score: 248
Period size: 77 Copynumber: 3.4 Consensus size: 76
86605964 TCGTATTTCA
* * * * *
86605974 AAAAAT-AGCTCATATTGCGAGAGGTGAGTTGAACCCCAGGTCACG-A-TGAGGTATTTCCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACGCATTGAGGTATTTTCAATT
86606036 TATGTTTTTTTTTT
66 T-TG--TTTTTTTT
** *
86606050 TTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAATCACGCATTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACGCATTGAGGTATTTTCAATT
***
86606115 TCTGTTTTTCAA
66 T-TGTTTTTTTT
* * * * * *
86606127 AAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCATCACGTCACACGTTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACGCATTGAGGTATTTTCAATT
*
86606192 TT-TTGCTTTTTC
66 TTGTT--TTTTTT
* *
86606204 AAAGATCAACTCATAATT-TGAGAGGTGAGTTGA
1 AAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGA
86606237 ACTTCGAGTC
Statistics
Matches: 153, Mismatches: 28, Indels: 11
0.80 0.15 0.06
Matches are distributed among these distances:
75 2 0.01
76 5 0.03
77 124 0.81
78 4 0.03
79 18 0.12
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.35
Consensus pattern (76 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACGCATTGAGGTATTTTCAATT
TTGTTTTTTTT
Found at i:86606504 original size:28 final size:28
Alignment explanation
Indices: 86606447--86606519 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 28
86606437 TTCAAAAAAA
* *
86606447 TAAAAATTGCATTTTGACTCCTAAACTTTCC
1 TAAAAATTACA-TTTAAC-CCTAAACTTT-C
* *
86606478 T-TAAATTACATTTAACCCTAAATTTTC
1 TAAAAATTACATTTAACCCTAAACTTTC
86606505 TAAAAATTACATTTA
1 TAAAAATTACATTTA
86606520 GCCTCTGAAG
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
27 2 0.06
28 21 0.58
29 5 0.14
30 7 0.19
31 1 0.03
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (28 bp):
TAAAAATTACATTTAACCCTAAACTTTC
Found at i:86606759 original size:15 final size:16
Alignment explanation
Indices: 86606739--86606780 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
86606729 TGAGAAAAAG
86606739 AGCAAAAAAAAATT-C
1 AGCAAAAAAAAATTCC
**
86606754 AGCAAAAAAATTTTCC
1 AGCAAAAAAAAATTCC
86606770 AGCAAAAAAAA
1 AGCAAAAAAAA
86606781 CAACAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.64, C:0.14, G:0.07, T:0.14
Consensus pattern (16 bp):
AGCAAAAAAAAATTCC
Found at i:86607594 original size:17 final size:17
Alignment explanation
Indices: 86607536--86607596 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
86607526 TCCGAATTTA
86607536 ATATATATATTTT-T--
1 ATATATATATTTTGTAC
*
86607550 ATA-ACTATATTATGTAC
1 ATATA-TATATTTTGTAC
86607567 ATATATATATTTTGTAC
1 ATATATATATTTTGTAC
86607584 ATATCAT-TATTTT
1 ATAT-ATATATTTT
86607597 ATATTATTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
13 1 0.03
14 10 0.26
15 1 0.03
17 24 0.62
18 3 0.08
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (17 bp):
ATATATATATTTTGTAC
Found at i:86607756 original size:24 final size:24
Alignment explanation
Indices: 86607729--86607777 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
86607719 TACATATTAT
86607729 TTTATATTATTATTACCAAATATA
1 TTTATATTATTATTACCAAATATA
86607753 TTTATATTATTATTACCAAATATA
1 TTTATATTATTATTACCAAATATA
86607777 T
1 T
86607778 CATTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (24 bp):
TTTATATTATTATTACCAAATATA
Found at i:86612065 original size:17 final size:18
Alignment explanation
Indices: 86612033--86612066 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
86612023 TAAAGTTGGG
*
86612033 ATAATTATACATTTAAAA
1 ATAATTAGACATTTAAAA
86612051 ATAATTAGA-ATTTAAA
1 ATAATTAGACATTTAAA
86612067 TTACAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (18 bp):
ATAATTAGACATTTAAAA
Found at i:86612418 original size:24 final size:24
Alignment explanation
Indices: 86612362--86612436 Score: 73
Period size: 23 Copynumber: 3.1 Consensus size: 24
86612352 TTATATGTTG
*
86612362 AATATGTTAAAAATATTTTAATTA
1 AATATGTTAAAAATATATTAATTA
*
86612386 ATTAT-TTAAAAAT-TATTAATTA
1 AATATGTTAAAAATATATTAATTA
* * *
86612408 TAATATGTTAATTAATAAATTAATAA
1 -AATATGTTAA-AAATATATTAATTA
86612434 AAT
1 AAT
86612437 TTAATTTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
22 8 0.20
23 12 0.29
24 8 0.20
25 6 0.15
26 7 0.17
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (24 bp):
AATATGTTAAAAATATATTAATTA
Found at i:86612441 original size:36 final size:36
Alignment explanation
Indices: 86612373--86612447 Score: 89
Period size: 36 Copynumber: 2.1 Consensus size: 36
86612363 ATATGTTAAA
* * * *
86612373 AATATTTTAATTAATTATTTAAAAATTATTAATTAT
1 AATATGTTAATTAATAAATTAAAAAATATTAATTAT
*
86612409 AATATGTTAATTAATAAATTAATAAAAT-TTAATTTT
1 AATATGTTAATTAATAAATTAA-AAAATATTAATTAT
86612445 AAT
1 AAT
86612448 TAAAAATGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
36 29 0.88
37 4 0.12
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (36 bp):
AATATGTTAATTAATAAATTAAAAAATATTAATTAT
Found at i:86613145 original size:4 final size:4
Alignment explanation
Indices: 86613136--86613179 Score: 88
Period size: 4 Copynumber: 11.0 Consensus size: 4
86613126 TAGTGAGACT
86613136 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
86613180 ATCTTAAGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:86616425 original size:11 final size:11
Alignment explanation
Indices: 86616409--86616460 Score: 56
Period size: 11 Copynumber: 4.9 Consensus size: 11
86616399 TTACAAGAAA
86616409 TGTAAAAAAAT
1 TGTAAAAAAAT
86616420 TGTAAAAAAA-
1 TGTAAAAAAAT
*
86616430 --TATAAAAAT
1 TGTAAAAAAAT
86616439 TGTAAAAGAAAT
1 TGTAAAA-AAAT
*
86616451 TTTAAAAAAA
1 TGTAAAAAAA
86616461 GGTAAATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
8 7 0.21
11 17 0.50
12 10 0.29
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (11 bp):
TGTAAAAAAAT
Found at i:86616644 original size:30 final size:27
Alignment explanation
Indices: 86616589--86616644 Score: 67
Period size: 30 Copynumber: 2.0 Consensus size: 27
86616579 TTTCAATTTT
**
86616589 AATTTATATATTATTTTAATTTTTTAA
1 AATTTATATATTATTTTAAAATTTTAA
86616616 AATTTATAATCATATATTTTAAAATTTTA
1 AATTTAT-AT-AT-TATTTTAAAATTTTA
86616645 TAAAAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 7 0.29
28 2 0.08
29 2 0.08
30 13 0.54
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (27 bp):
AATTTATATATTATTTTAAAATTTTAA
Found at i:86616677 original size:20 final size:21
Alignment explanation
Indices: 86616610--86616671 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
86616600 TATTTTAATT
*
86616610 TTTTAAAA-TTTATAATCATATA
1 TTTTAAAATTTTATAA--AAATA
86616632 TTTTAAAATTTTATAAAAAATA
1 TTTTAAAATTTTAT-AAAAATA
*
86616654 TTTTAATATTTTATAAAA
1 TTTTAAAATTTTATAAAA
86616672 TTTTTTTACA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
21 4 0.11
22 25 0.69
23 5 0.14
24 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TTTTAAAATTTTATAAAAATA
Found at i:86617901 original size:22 final size:23
Alignment explanation
Indices: 86617856--86617904 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
86617846 GAATTATAAA
86617856 ATATATAAAATATGTACATATAT
1 ATATATAAAATATGTACATATAT
* * *
86617879 ATATGTAAAA-ATGTATATTTAT
1 ATATATAAAATATGTACATATAT
86617901 ATAT
1 ATAT
86617905 TTATAAAGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (23 bp):
ATATATAAAATATGTACATATAT
Found at i:86619658 original size:14 final size:15
Alignment explanation
Indices: 86619641--86619685 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
86619631 AACTTTTTAT
86619641 ATTTTATTTTTAA-A
1 ATTTTATTTTTAATA
**
86619655 ATTTTAAATTTAATA
1 ATTTTATTTTTAATA
*
86619670 ATTTTATTTTAAATA
1 ATTTTATTTTTAATA
86619685 A
1 A
86619686 ATCTAATTAC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 11 0.44
15 14 0.56
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTTTATTTTTAATA
Found at i:86621303 original size:36 final size:36
Alignment explanation
Indices: 86621230--86621306 Score: 95
Period size: 36 Copynumber: 2.1 Consensus size: 36
86621220 ACAATTAATT
* *
86621230 AAATTTTTTAAAATTTAAAAATTCAAAAAATGTATA
1 AAATTTTTTAAAATTTAAAAATTCAAAAAAGGCATA
*
86621266 AAATTTTTTAAAA-TTAAAAATT-ATTAAAAGGGCATA
1 AAATTTTTTAAAATTTAAAAATTCA--AAAAAGGCATA
86621302 AAATT
1 AAATT
86621307 ATAAAAATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
34 1 0.03
35 9 0.25
36 26 0.72
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.38
Consensus pattern (36 bp):
AAATTTTTTAAAATTTAAAAATTCAAAAAAGGCATA
Found at i:86623675 original size:28 final size:30
Alignment explanation
Indices: 86623643--86623702 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 30
86623633 TTATAATATT
86623643 AATAATTTAAAAA-ACAT-TAAAT-AAGAAA
1 AATAA-TTAAAAACACATGTAAATGAAGAAA
*
86623671 AATAATTAAAAACACTTGTAAATGAAGAAA
1 AATAATTAAAAACACATGTAAATGAAGAAA
86623701 AA
1 AA
86623703 ATTGTCTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 7 0.25
28 8 0.29
29 5 0.18
30 8 0.29
ACGTcount: A:0.65, C:0.05, G:0.07, T:0.23
Consensus pattern (30 bp):
AATAATTAAAAACACATGTAAATGAAGAAA
Found at i:86650214 original size:30 final size:29
Alignment explanation
Indices: 86650154--86650220 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 29
86650144 AAATATGTTG
86650154 ATTGATTTTAATTATTTTATATGAAATTA
1 ATTGATTTTAATTATTTTATATGAAATTA
* * *
86650183 ATTGATGTTTAATTATTTTATGTGGATTTA
1 ATTGAT-TTTAATTATTTTATATGAAATTA
86650213 ATTG-TTTT
1 ATTGATTTT
86650221 CTAAAAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 3 0.09
29 7 0.21
30 24 0.71
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (29 bp):
ATTGATTTTAATTATTTTATATGAAATTA
Found at i:86651061 original size:3 final size:3
Alignment explanation
Indices: 86651053--86651083 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
86651043 ATATATGTTA
*
86651053 AAT AAT AAT TAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
86651084 TGTATTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:86651743 original size:6 final size:6
Alignment explanation
Indices: 86651732--86651759 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
86651722 ACCAAAAAGT
86651732 TAAAAA TAAAAA TAAAAA TAAAAA TAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAA
86651760 TAAAAGAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
TAAAAA
Found at i:86657840 original size:113 final size:111
Alignment explanation
Indices: 86657646--86657852 Score: 247
Period size: 113 Copynumber: 1.8 Consensus size: 111
86657636 ATATATATGG
* ** *
86657646 TTCATGATAAAATTAATTTTAATCTATATACATTATTAAATCTATGTTATTTTATACATATGATT
1 TTCATGATAAAATTAAGTTTAATCTATATACATTATTAAATCTACATTATTTTATACATATAATT
** * *
86657711 CTTTTAAGTTTATTTATATACATAATTATGTTTTTAAAATCTATTATA
66 CTTCCAAATCTATTTATATAC-T-ATTATGTTTTTAAAATCTATTATA
* * * *
86657759 TTCATGGTAAAATT-AGTTTAATTTTATATGCATTATTAACTCTACATTATTTT-TACATATAAT
1 TTCATGATAAAATTAAGTTTAA-TCTATATACATTATTAAATCTACATTATTTTATACATATAAT
*
86657822 TACTTCCAAATCTATTTATGTACTATTATGT
65 T-CTTCCAAATCTATTTATATACTATTATGT
86657853 GTATAGTTTA
Statistics
Matches: 79, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
111 7 0.09
112 17 0.22
113 55 0.70
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.50
Consensus pattern (111 bp):
TTCATGATAAAATTAAGTTTAATCTATATACATTATTAAATCTACATTATTTTATACATATAATT
CTTCCAAATCTATTTATATACTATTATGTTTTTAAAATCTATTATA
Found at i:86659341 original size:100 final size:100
Alignment explanation
Indices: 86659163--86659351 Score: 288
Period size: 100 Copynumber: 1.9 Consensus size: 100
86659153 CGCCAACCTA
* *
86659163 CTCTCTTGCTGCCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCAAAACATGGAG
1 CTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCAAAACATGGAA
86659228 ATAAGATTCGCCATCTTCGATCTGCTTCACCGCTG
66 ATAAGATTCGCCATCTTCGATCTGCTTCACCGCTG
* * * * * *
86659263 CTCTCTTGCTATCTCAGATAGATAAGGCTGGTGGTTTAAATCTGCTCCATTGCCAATACATGGAA
1 CTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCAAAACATGGAA
* *
86659328 ATAAGATTTGCCATCTTTGATCTG
66 ATAAGATTCGCCATCTTCGATCTG
86659352 GTCCGCTACT
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (100 bp):
CTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCAAAACATGGAA
ATAAGATTCGCCATCTTCGATCTGCTTCACCGCTG
Found at i:86659554 original size:176 final size:177
Alignment explanation
Indices: 86659260--86660041 Score: 1029
Period size: 176 Copynumber: 4.4 Consensus size: 177
86659250 TGCTTCACCG
* * * * * *
86659260 CTGCTCTCTTGCTATCTCAGATAGATAAGGCTGGTGGTTTAAATCTGCTCCATTGCCAATACATG
1 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATG
* * * * * *
86659325 GAAATAAGATTTGCCATCTTTGATCTGGTCCGCTACTGCTGAGGGAGATAAGATCCTT-AATCTT
66 GAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT-CTTCAATCTT
* *
86659389 CAGTCTACTTCTTTTCTACCTCAGGAAGATAAGACT-CAATCTTCAAC
130 CAGTCTGCTTCTTTGCTACCTCAGGAAGATAAGACTACAATCTTCAAC
* * * *
86659436 CTGCTCTCTTGTTACATCAGCGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGAAACATG
1 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATG
* *
86659501 GAGATAAGATTCGCCATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTTCAATCTTT
66 GAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTC
*
86659566 AGTCTGCTT-TCTTGCTACCTTAGGAAGATAAGACTACAAT-TTCCAAC
131 AGTCTGCTTCT-TTGCTACCTCAGGAAGATAAGACTACAATCTT-CAAC
* *
86659613 CTGCTCTCTTGCTACCTTAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGTCGATACATG
1 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATG
* * *
86659678 GAGATAAGATTTGCC-TCTTTCGATCTACTCCATTACTGCTTAGGGAGATAAGATCTTCAATCTT
66 GAGATAAGATTCGCCATC-TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTT
* * * * *
86659742 CAGGCTGCTTCCTCGCTACCTCAGGAAGATAAGACTGCAATCGTCAAC
130 CAGTCTGCTTCTTTGCTACCTCAGGAAGATAAGACTACAATCTTCAAC
*
86659790 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCCAGTGG-TAAAATCTGCTCCATTGCCGATACATG
1 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATG
* * *
86659854 GAGATAAGATTCACCATCTTCGATCTGCTCCACAACTGCTTAGGGAGATAAGATCTTAAATCTTC
66 GAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTC
*** * * *
86659919 AGTCTGCTTCTTTGCTACCTCAGGAAGATAAGACTTGTATATTGAGC
131 AGTCTGCTTCTTTGCTACCTCAGGAAGATAAGACTACAATCTTCAAC
* * * * * * * *
86659966 CTGCTC-CACTGCAACTTTAGTGAGATAAGGCTGGTAGCTTAAATCTGCTCCATTGCCGATACAT
1 CTGCTCTC-TTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACAT
86660030 GGAGATAAGATT
65 GGAGATAAGATT
86660042 TGTTGTCTTT
Statistics
Matches: 530, Mismatches: 66, Indels: 19
0.86 0.11 0.03
Matches are distributed among these distances:
175 5 0.01
176 288 0.54
177 236 0.45
178 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (177 bp):
CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATG
GAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTC
AGTCTGCTTCTTTGCTACCTCAGGAAGATAAGACTACAATCTTCAAC
Found at i:86659794 original size:44 final size:45
Alignment explanation
Indices: 86659722--86659818 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 45
86659712 ACTGCTTAGG
* * **
86659722 GAGATAAGATCTTCAATCTTCAGGCTGCT-TCCTCGCTACCTCAG-
1 GAGATAAGATCTGCAATCGTCAACCTGCTCT-CTCGCTACCTCAGA
*
86659766 GAAGATAAGA-CTGCAATCGTCAACCTGCTCTCTTGCTACCTCAGA
1 G-AGATAAGATCTGCAATCGTCAACCTGCTCTCTCGCTACCTCAGA
86659811 GAGATAAG
1 GAGATAAG
86659819 GCCAGTGGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
44 35 0.78
45 10 0.22
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (45 bp):
GAGATAAGATCTGCAATCGTCAACCTGCTCTCTCGCTACCTCAGA
Found at i:86659906 original size:353 final size:353
Alignment explanation
Indices: 86659260--86660066 Score: 1104
Period size: 353 Copynumber: 2.3 Consensus size: 353
86659250 TGCTTCACCG
* * * * *
86659260 CTGCTCTCTTGCTATCTCAGATAGATAAGGCTGGTGGTTTAAATCTGCTCCATTGCCAATACATG
1 CTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATG
* ** *
86659325 GAAATAAGATTTGCCATCTTTGATCTGGTCCGCTACTGCTGAGGGAGATAAGATCCTTAATCTTC
66 GAGATAAGATTTGCCATCTTTGATCTACTCCACTACTGCTGAGGGAGATAAGATCCTTAATCTTC
* * ** * *
86659390 AGTCTACTTCTTTTCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGTTACATCA
131 AGGCTACTTCCTCGCTACCTCAGGAAGATAAGACTCAATCGTCAACCTGCTCTCTTGCTACATCA
* * *
86659455 GCGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGAAACATGGAGATAAGATTCGCCATCT
196 GAGAGATAAGGCCAGTGGCTAAAATCTGCTCCATTGCCGAAACATGGAGATAAGATTCACCATCT
* * * *
86659520 TCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTTCAATCTTTAGTCTGCTT-TCTTGCTAC
261 TCGATCTGCTCCACAACTGCTTAGGGAGATAAGATCTTAAATCTTCAGTCTGCTTCT-TTGCTAC
*
86659584 CTTAGGAAGATAAGACTACAAT-TTCCAAC
325 CTCAGGAAGATAAGACTACAATATT-CAAC
* * *
86659613 CTGCTCTCTTGCTACCTTAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGTCGATACATG
1 CTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATG
* *
86659678 GAGATAAGATTTGCC-TCTTTCGATCTACTCCATTACTGCTTAGGGAGATAAGAT-CTTCAATCT
66 GAGATAAGATTTGCCATCTTT-GATCTACTCCACTACTGCTGAGGGAGATAAGATCCTT-AATCT
* *
86659741 TCAGGCTGCTTCCTCGCTACCTCAGGAAGATAAGACTGCAATCGTCAACCTGCTCTCTTGCTACC
129 TCAGGCTACTTCCTCGCTACCTCAGGAAGATAAGACT-CAATCGTCAACCTGCTCTCTTGCTACA
*
86659806 TCAGAGAGATAAGGCCAGTGG-TAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCA
193 TCAGAGAGATAAGGCCAGTGGCTAAAATCTGCTCCATTGCCGAAACATGGAGATAAGATTCACCA
86659870 TCTTCGATCTGCTCCACAACTGCTTAGGGAGATAAGATCTTAAATCTTCAGTCTGCTTCTTTGCT
258 TCTTCGATCTGCTCCACAACTGCTTAGGGAGATAAGATCTTAAATCTTCAGTCTGCTTCTTTGCT
*** * *
86659935 ACCTCAGGAAGATAAGACTTGTATATTGAGC
323 ACCTCAGGAAGATAAGACTACAATATTCAAC
* * * * *
86659966 CTGCTC-CACTGCAACTTTAGTGAGATAAGGCTGGTAGCTTAAATCTGCTCCATTGCCGATACAT
1 CTGCTCTC-TTGCTACCTTAGAGAGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACAT
*** * *
86660030 GGAGATAAGATTTGTTGTCTTTGGTCTGCTCCACTAC
65 GGAGATAAGATTTGCCATCTTTGATCTACTCCACTAC
86660067 AACCTCAAGG
Statistics
Matches: 398, Mismatches: 49, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
352 9 0.02
353 338 0.85
354 51 0.13
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (353 bp):
CTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCGATACATG
GAGATAAGATTTGCCATCTTTGATCTACTCCACTACTGCTGAGGGAGATAAGATCCTTAATCTTC
AGGCTACTTCCTCGCTACCTCAGGAAGATAAGACTCAATCGTCAACCTGCTCTCTTGCTACATCA
GAGAGATAAGGCCAGTGGCTAAAATCTGCTCCATTGCCGAAACATGGAGATAAGATTCACCATCT
TCGATCTGCTCCACAACTGCTTAGGGAGATAAGATCTTAAATCTTCAGTCTGCTTCTTTGCTACC
TCAGGAAGATAAGACTACAATATTCAAC
Found at i:86660342 original size:64 final size:64
Alignment explanation
Indices: 86660240--86660493 Score: 332
Period size: 64 Copynumber: 4.0 Consensus size: 64
86660230 TTCATGTATC
* * * * * ** * *
86660240 ATGCTTATGCCAAATAACTAGGATGCTACGATCAAAATGAATCAACTATTCCTAATTAGATTTG
1 ATGCTTATGTCAAATAATTAGGACGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* * *
86660304 ATGCTTATGTCAAATAATTAGGATGCCATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGACGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* * * *
86660368 ATGCTTACGTCAAATAATTAGGACGCTATGATAAAAATGAATTAAATGCTCCTAACTAGATGTA
1 ATGCTTATGTCAAATAATTAGGACGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* *
86660432 ATG-TGATGTCAAATAATTAGGACGCTATGATCGAAATGAATCAAATGCT-CTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGACGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
86660494 TTATGAATGA
Statistics
Matches: 167, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
62 12 0.07
63 41 0.25
64 114 0.68
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGACGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:86675565 original size:22 final size:23
Alignment explanation
Indices: 86675537--86675579 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
86675527 AAAAACAAAT
* *
86675537 AATAAAATCTTAAA-TAAAAACG
1 AATAAAAACATAAATTAAAAACG
86675559 AATAAAAACATAAATTAAAAA
1 AATAAAAACATAAATTAAAAA
86675580 AACTCGATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.70, C:0.07, G:0.02, T:0.21
Consensus pattern (23 bp):
AATAAAAACATAAATTAAAAACG
Found at i:86676458 original size:10 final size:11
Alignment explanation
Indices: 86676425--86676460 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
86676415 ACAAATTTCA
86676425 TTGCTGTC-AT
1 TTGCTGTCTAT
86676435 TTGCTGT-TAT
1 TTGCTGTCTAT
86676445 TTGCTGTCTA-
1 TTGCTGTCTAT
86676455 TTGCTG
1 TTGCTG
86676461 GTGGTTGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 22 0.92
11 2 0.08
ACGTcount: A:0.08, C:0.17, G:0.22, T:0.53
Consensus pattern (11 bp):
TTGCTGTCTAT
Found at i:86676798 original size:19 final size:20
Alignment explanation
Indices: 86676762--86676799 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
86676752 TTGAATTTTA
* *
86676762 TTTTGTTATTTTGTTTTTGC
1 TTTTGTTATTCTGGTTTTGC
86676782 TTTT-TTATTCTGGTTTTG
1 TTTTGTTATTCTGGTTTTG
86676800 GTATGGATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.05, C:0.05, G:0.16, T:0.74
Consensus pattern (20 bp):
TTTTGTTATTCTGGTTTTGC
Found at i:86684114 original size:17 final size:16
Alignment explanation
Indices: 86684094--86684149 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 16
86684084 AAAGAGAATG
86684094 GAAAATAAATAGAAAAA
1 GAAAATAAA-AGAAAAA
* *
86684111 GAAAAGAAAAGTTAAAA
1 GAAAATAAAAG-AAAAA
*
86684128 GAATATAAAAGAAGAAA
1 GAAAATAAAAGAA-AAA
86684145 -AAAAT
1 GAAAAT
86684150 TACTCAAAAC
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
16 7 0.23
17 24 0.77
ACGTcount: A:0.73, C:0.00, G:0.14, T:0.12
Consensus pattern (16 bp):
GAAAATAAAAGAAAAA
Found at i:86684830 original size:30 final size:31
Alignment explanation
Indices: 86684773--86684847 Score: 82
Period size: 30 Copynumber: 2.4 Consensus size: 31
86684763 AACTATATCA
* * *
86684773 TTAATAAAACATACTTAAGATATTTAAAAAT
1 TTAAAAAAACATACTTAAAATATTTAAAAAC
*
86684804 TTATAAAAACATA-TTAAAAT-TCTTAAAAAC
1 TTAAAAAAACATACTTAAAATAT-TTAAAAAC
86684834 TTAAAAAAATCATA
1 TTAAAAAAA-CATA
86684848 AAAATATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 1 0.03
30 21 0.57
31 15 0.41
ACGTcount: A:0.57, C:0.08, G:0.01, T:0.33
Consensus pattern (31 bp):
TTAAAAAAACATACTTAAAATATTTAAAAAC
Found at i:86684842 original size:20 final size:21
Alignment explanation
Indices: 86684819--86684871 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
86684809 AAAACATATT
86684819 AAAATTCTTAAAAACT-T-AAA
1 AAAATTCTTAAAAA-TATAAAA
*
86684839 AAAA-TCATAAAAATATAAAA
1 AAAATTCTTAAAAATATAAAA
*
86684859 AAAATTATTAAAA
1 AAAATTCTTAAAA
86684872 TTGATATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
18 1 0.04
19 9 0.33
20 11 0.41
21 6 0.22
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAATTCTTAAAAATATAAAA
Found at i:86684868 original size:49 final size:49
Alignment explanation
Indices: 86684797--86684901 Score: 131
Period size: 49 Copynumber: 2.1 Consensus size: 49
86684787 TTAAGATATT
* * *
86684797 TAAAAATTTATAAAAACATATTAAAATTCTTAAAAACTTAAAAAAATCA
1 TAAAAATATATAAAAAAATATTAAAATTCATAAAAACTTAAAAAAATCA
* * * *
86684846 TAAAAATATA-AAAAAAATTATTAAAATTGATATAAACTTATAAAAATTA
1 TAAAAATATATAAAAAAA-TATTAAAATTCATAAAAACTTAAAAAAATCA
86684895 TAAAAAT
1 TAAAAAT
86684902 TTGAACCAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
48 6 0.12
49 42 0.88
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.31
Consensus pattern (49 bp):
TAAAAATATATAAAAAAATATTAAAATTCATAAAAACTTAAAAAAATCA
Found at i:86684871 original size:9 final size:9
Alignment explanation
Indices: 86684797--86684902 Score: 68
Period size: 9 Copynumber: 10.9 Consensus size: 9
86684787 TTAAGATATT
86684797 TAAAAATTTA
1 TAAAAA-TTA
*
86684807 TAAAAACATA
1 TAAAAA-TTA
* *
86684817 TTAAAATTCT
1 TAAAAATT-A
86684827 TAAAAACTTA
1 TAAAAA-TTA
* *
86684837 AAAAAATCA
1 TAAAAATTA
86684846 TAAAAATATAA
1 TAAAAAT-T-A
*
86684857 AAAAAATTA
1 TAAAAATTA
*
86684866 TTAAAATTGA
1 TAAAAATT-A
*
86684876 TATAAACTTA
1 TA-AAAATTA
86684886 TAAAAATTA
1 TAAAAATTA
86684895 TAAAAATT
1 TAAAAATT
86684903 TGAACCAAAT
Statistics
Matches: 73, Mismatches: 17, Indels: 13
0.71 0.17 0.13
Matches are distributed among these distances:
9 30 0.41
10 29 0.40
11 14 0.19
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.32
Consensus pattern (9 bp):
TAAAAATTA
Found at i:86700810 original size:14 final size:14
Alignment explanation
Indices: 86700774--86700812 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
86700764 TTGTTTCACT
*
86700774 GAAAATGACTTTTA
1 GAAAATGATTTTTA
86700788 GAAAATGATTTTTA
1 GAAAATGATTTTTA
86700802 GAAAATGATTT
1 GAAAATGATTT
86700813 ATTTTTCTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.44, C:0.03, G:0.15, T:0.38
Consensus pattern (14 bp):
GAAAATGATTTTTA
Found at i:86701264 original size:15 final size:15
Alignment explanation
Indices: 86701244--86701295 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
86701234 ACTACAAAGC
86701244 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
86701259 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
86701278 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
86701293 ATT
1 ATT
86701296 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:86703335 original size:19 final size:18
Alignment explanation
Indices: 86703309--86703444 Score: 79
Period size: 20 Copynumber: 7.4 Consensus size: 18
86703299 AAATATCAAA
*
86703309 TATAAAAATTTTCAAAAT
1 TATAAAAATTTTAAAAAT
*
86703327 TATTAAAAAATTTAAAAAT
1 TA-TAAAAATTTTAAAAAT
*
86703346 TATAAAAATATTATTAAAAT
1 TATAAAAAT-TT-TAAAAAT
86703366 TCA-AAAAA---TAAAAAT
1 T-ATAAAAATTTTAAAAAT
86703381 T-TAAAAATTATT-AAAA-
1 TATAAAAATT-TTAAAAAT
* **
86703397 TATAAATATTACTTAATTAT
1 TATAAAAATT--TTAAAAAT
*
86703417 TATAAAAATTTCAAAATAT
1 TATAAAAATTTTAAAA-AT
86703436 TAATAAAAA
1 T-ATAAAAA
86703445 CATATAAAAA
Statistics
Matches: 90, Mismatches: 13, Indels: 28
0.69 0.10 0.21
Matches are distributed among these distances:
14 5 0.06
15 7 0.08
16 1 0.01
17 11 0.12
18 14 0.16
19 23 0.26
20 28 0.31
21 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (18 bp):
TATAAAAATTTTAAAAAT
Found at i:86703342 original size:28 final size:28
Alignment explanation
Indices: 86703309--86703461 Score: 51
Period size: 28 Copynumber: 5.5 Consensus size: 28
86703299 AAATATCAAA
*
86703309 TATAAAAATTTTCAAAATTATTAAAAA-AT
1 TATAAAAA-TTTAAAAATTA-TAAAAATAT
*
86703338 T-TAAAAATTATAAAAA-TATTATTAAA-AT
1 TATAAAAATT-TAAAAATTA-TA-AAAATAT
86703366 TCA-AAAAA--TAAAAATT-T-AAAA-AT
1 T-ATAAAAATTTAAAAATTATAAAAATAT
* * * * *
86703389 TATTAAAATATAAATATTACT-TAATTAT
1 TATAAAAATTTAAAAATTA-TAAAAATAT
*
86703417 TATAAAAATTTCAAAATATTAATAAAAACA-
1 TATAAAAATTT-AAAA-ATT-ATAAAAATAT
*
86703447 TATAAAAAATTAAAA
1 TATAAAAATTTAAAA
86703462 TTTTATTAAA
Statistics
Matches: 95, Mismatches: 14, Indels: 30
0.68 0.10 0.22
Matches are distributed among these distances:
22 1 0.01
23 10 0.11
25 8 0.08
26 6 0.06
27 11 0.12
28 28 0.29
29 13 0.14
30 14 0.15
31 4 0.04
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (28 bp):
TATAAAAATTTAAAAATTATAAAAATAT
Found at i:86703365 original size:11 final size:10
Alignment explanation
Indices: 86703311--86703364 Score: 58
Period size: 9 Copynumber: 5.5 Consensus size: 10
86703301 ATATCAAATA
86703311 TAAAAATT-T
1 TAAAAATTAT
*
86703320 TCAAAATTAT
1 TAAAAATTAT
*
86703330 TAAAAAAT-T
1 TAAAAATTAT
86703339 TAAAAATTAT
1 TAAAAATTAT
*
86703349 AAAAATATTAT
1 TAAAA-ATTAT
86703360 TAAAA
1 TAAAA
86703365 TTCAAAAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
9 15 0.42
10 12 0.33
11 9 0.25
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:86704567 original size:19 final size:20
Alignment explanation
Indices: 86704543--86704580 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
86704533 CTTGGAACCA
86704543 AGAATTATA-GTTTTGACCC
1 AGAATTATATGTTTTGACCC
*
86704562 AGAATTTTATGTTTTGACC
1 AGAATTATATGTTTTGACC
86704581 AAATTAGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (20 bp):
AGAATTATATGTTTTGACCC
Found at i:86713594 original size:14 final size:14
Alignment explanation
Indices: 86713575--86713603 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
86713565 GAACCAGGTG
86713575 CTGAATTTTTGCCT
1 CTGAATTTTTGCCT
86713589 CTGAATTTTTGCCT
1 CTGAATTTTTGCCT
86713603 C
1 C
86713604 GGGAAACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.24, G:0.14, T:0.48
Consensus pattern (14 bp):
CTGAATTTTTGCCT
Found at i:86715904 original size:22 final size:22
Alignment explanation
Indices: 86715861--86715904 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
86715851 GCAAGACTAA
* *
86715861 AAAAAATTCTATAAGAGTAGAC
1 AAAAAATTCTAAAAGAGAAGAC
* *
86715883 AAAAAATTTTAAAAGTGAAGAC
1 AAAAAATTCTAAAAGAGAAGAC
86715905 CTATTAAACA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.23
Consensus pattern (22 bp):
AAAAAATTCTAAAAGAGAAGAC
Found at i:86716957 original size:21 final size:21
Alignment explanation
Indices: 86716931--86716974 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
86716921 AGTTAAGTAT
86716931 TATTTATTTATCATCAAAAAG
1 TATTTATTTATCATCAAAAAG
*
86716952 TATTTATTTATCATTAAAAAG
1 TATTTATTTATCATCAAAAAG
86716973 TA
1 TA
86716975 ACTTTTCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (21 bp):
TATTTATTTATCATCAAAAAG
Found at i:86725126 original size:26 final size:24
Alignment explanation
Indices: 86725097--86725175 Score: 65
Period size: 24 Copynumber: 3.2 Consensus size: 24
86725087 TAAACTATTC
86725097 TATATGCTATTCATTTTAAA-TTTT
1 TATAT-CTATTCATTTTAAATTTTT
* *
86725121 TATATAATATTCATATTAAATTATTT
1 TATAT-CTATTCATTTTAAATT-TTT
*
86725147 TA-ATACATATT-ATTTTGAATTTTT
1 TATAT-C-TATTCATTTTAAATTTTT
86725171 TATAT
1 TATAT
86725176 TAATTATTCT
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
24 22 0.49
25 14 0.31
26 9 0.20
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (24 bp):
TATATCTATTCATTTTAAATTTTT
Found at i:86725131 original size:24 final size:24
Alignment explanation
Indices: 86725104--86725184 Score: 76
Period size: 26 Copynumber: 3.2 Consensus size: 24
86725094 TTCTATATGC
86725104 TATTCATTTTAAATTTTTATATAA
1 TATTCATTTTAAATTTTTATATAA
*
86725128 TATTCATATTAAATTATTT-TAATACA
1 TATTCATTTTAAATT-TTTAT-ATA-A
*
86725154 TATT-ATTTTGAATTTTTTATATTAA
1 TATTCATTTT-AAATTTTTATA-TAA
86725179 TTATTC
1 -TATTC
86725185 TACATTGCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
24 15 0.33
25 15 0.33
26 16 0.35
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.58
Consensus pattern (24 bp):
TATTCATTTTAAATTTTTATATAA
Found at i:86725491 original size:24 final size:24
Alignment explanation
Indices: 86725402--86725583 Score: 99
Period size: 24 Copynumber: 7.7 Consensus size: 24
86725392 TTGTTTTATG
*
86725402 TATATTATTTACTTTAAATTTCTTTT
1 TATATTATTTATTTTAAA-TT-TTTT
* * *
86725428 TACATATTATTTATTTTAGA-CTTTC
1 T--ATATTATTTATTTTAAATTTTTT
* *
86725453 T-TATTAATGATTTTAAATTTTTT
1 TATATTATTTATTTTAAATTTTTT
* *
86725476 TATATTATTTACTTTAAATTGCTTT
1 TATATTATTTATTTTAAATT-TTTT
* * ** *
86725501 TATAGTATTAATTTTAAACCTTTA
1 TATATTATTTATTTTAAATTTTTT
* * *
86725525 TATA-TA-TTA-TTTAAAATTATC
1 TATATTATTTATTTTAAATTTTTT
* * *
86725546 T-TATTATTTGTTTTAAGTTGTTT
1 TATATTATTTATTTTAAATTTTTT
86725569 TATATTA-TTATTTTA
1 TATATTATTTATTTTA
86725584 TTTCTATGTT
Statistics
Matches: 115, Mismatches: 32, Indels: 21
0.68 0.19 0.12
Matches are distributed among these distances:
20 2 0.02
21 11 0.10
22 17 0.15
23 21 0.18
24 26 0.23
25 22 0.19
26 1 0.01
28 15 0.13
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.60
Consensus pattern (24 bp):
TATATTATTTATTTTAAATTTTTT
Found at i:86725509 original size:25 final size:24
Alignment explanation
Indices: 86725464--86725518 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
86725454 TATTAATGAT
* * *
86725464 TTTAAATTTTTTTATATTATTTAC
1 TTTAAATTCTTTTATAGTATTAAC
*
86725488 TTTAAATTGCTTTTATAGTATTAAT
1 TTTAAATT-CTTTTATAGTATTAAC
86725513 TTTAAA
1 TTTAAA
86725519 CCTTTATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.60
Consensus pattern (24 bp):
TTTAAATTCTTTTATAGTATTAAC
Found at i:86728121 original size:40 final size:42
Alignment explanation
Indices: 86728064--86728216 Score: 170
Period size: 43 Copynumber: 3.7 Consensus size: 42
86728054 TTTATGGAAA
*
86728064 AAACGCCTCTATAGAACATGACCTTTAGTGGCG-TTTCTCAC
1 AAACGACTCTATAGAACATGACCTTTAGTGGCGTTTTCTCAC
* *
86728105 AAA-AACTCTATAGAACATGACCTTTAGCT-GCGTTTTTTCAC
1 AAACGACTCTATAGAACATGACCTTTAG-TGGCGTTTTCTCAC
* * * *
86728146 AAACGA-TGCTATAGAAAAAGACATTTAGTGGCGCTTTTCCCAC
1 AAACGACT-CTATAGAACATGACCTTTAGTGGCG-TTTTCTCAC
* *
86728189 AAACGCCACTATAGAACATGACCTTTAG
1 AAACGACTCTATAGAACATGACCTTTAG
86728217 CAGCGGTTTT
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
40 25 0.27
41 16 0.18
42 21 0.23
43 29 0.32
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.28
Consensus pattern (42 bp):
AAACGACTCTATAGAACATGACCTTTAGTGGCGTTTTCTCAC
Found at i:86728688 original size:66 final size:65
Alignment explanation
Indices: 86728609--86728737 Score: 179
Period size: 66 Copynumber: 2.0 Consensus size: 65
86728599 AAGTTGTAAC
* * *
86728609 TGGAGTTCGTCATATTTTCTGCTT-GCATTTGCTTCTCTCGCTGCTGCCTTTGCTTTAAGTTGAA
1 TGGAGTTCGTCATATTTTCT--TTAGCATCTGCTTCTCTCGATGCTGCCTTCGCTTTAAGTTGAA
86728673 GT
64 GT
* *
86728675 TGGAGTTCTTCATATTTTCTTTGAGCCTCTGCTTCTCTCGATGCTGCCTTCGCTTTAAGTTGA
1 TGGAGTTCGTCATATTTTCTTT-AGCATCTGCTTCTCTCGATGCTGCCTTCGCTTTAAGTTGA
86728738 GCAATTTCCT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
64 2 0.04
66 54 0.96
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.45
Consensus pattern (65 bp):
TGGAGTTCGTCATATTTTCTTTAGCATCTGCTTCTCTCGATGCTGCCTTCGCTTTAAGTTGAAGT
Found at i:86729586 original size:24 final size:24
Alignment explanation
Indices: 86729559--86729606 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
86729549 AACTAAACTT
86729559 CCAAGCATGAATGAAGGATAATTG
1 CCAAGCATGAATGAAGGATAATTG
*
86729583 CCAAGCATGAATGGAGGATAATTG
1 CCAAGCATGAATGAAGGATAATTG
86729607 ATATAACAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.12, G:0.27, T:0.21
Consensus pattern (24 bp):
CCAAGCATGAATGAAGGATAATTG
Found at i:86730430 original size:16 final size:13
Alignment explanation
Indices: 86730409--86730443 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
86730399 AAATAGTTCA
* *
86730409 AAAATAGTATGTT
1 AAAATAATAGGTT
86730422 AAAATAATAGGTT
1 AAAATAATAGGTT
86730435 AAAATAATA
1 AAAATAATA
86730444 ATAATAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.31
Consensus pattern (13 bp):
AAAATAATAGGTT
Found at i:86733998 original size:21 final size:21
Alignment explanation
Indices: 86733959--86733998 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
86733949 TCAACAGGAT
*
86733959 TAATATATATAAAGTTTAAAC
1 TAATATATATAAAGATTAAAC
86733980 TAATATATATTAAA-ATTAA
1 TAATATATA-TAAAGATTAA
86733999 TATTATCTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (21 bp):
TAATATATATAAAGATTAAAC
Found at i:86737857 original size:19 final size:19
Alignment explanation
Indices: 86737833--86737906 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
86737823 ATAATCTTCA
86737833 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86737852 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
86737871 ATGAT-TGCAATCGTAGAT
1 ATGATATGCAATCTTAGAT
86737889 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
86737907 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
18 17 0.33
19 35 0.67
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:86737880 original size:37 final size:38
Alignment explanation
Indices: 86737833--86737913 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 38
86737823 ATAATCTTCA
*
86737833 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATATGCAATCGTAGATATGATATGCAATCTTAGAT
86737871 ATGAT-TGCAATCGTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCGTAGATATGATATGCAATCTTAGAT
86737907 A-GATATG
1 ATGATATG
86737914 ATTTTGTAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
35 3 0.07
36 3 0.07
37 30 0.73
38 5 0.12
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.35
Consensus pattern (38 bp):
ATGATATGCAATCGTAGATATGATATGCAATCTTAGAT
Found at i:86737928 original size:23 final size:22
Alignment explanation
Indices: 86737833--86737930 Score: 90
Period size: 19 Copynumber: 4.9 Consensus size: 22
86737823 ATAATCTTCA
86737833 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
86737852 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
86737871 ATGAT-TGCAATC---GTAGAT
1 ATGATATGCAATCTTAGAAGAT
86737889 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
86737911 ATGATTTTGTAATCTTAGAA
1 ATGA-TATGCAATCTTAGAA
86737931 ATTTAATTTG
Statistics
Matches: 69, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
18 16 0.23
19 31 0.45
22 9 0.13
23 13 0.19
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:86738222 original size:18 final size:17
Alignment explanation
Indices: 86738199--86738232 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
86738189 TTTCCCTGAT
*
86738199 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
86738217 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
86738233 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:86746495 original size:78 final size:78
Alignment explanation
Indices: 86746392--86746624 Score: 405
Period size: 78 Copynumber: 3.0 Consensus size: 78
86746382 TTTTCACATC
*
86746392 GAAGTAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGA
1 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGA
86746457 TCTGACCTTCATT
66 TCTGACCTTCATT
*
86746470 GAAGCAGATCTAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGA
1 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGA
86746535 T-TGGACCTTCATT
66 TCT-GACCTTCATT
* * *
86746548 GAAGCAGATCCAAGATGATTTGGCATCTTTGTATTAGACGGGGAGCAGATCGAAGAAATAGCAGA
1 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGA
86746613 TCTGACCTTCAT
66 TCTGACCTTCAT
86746625 GTGTTTACAT
Statistics
Matches: 147, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
77 1 0.01
78 145 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (78 bp):
GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGA
TCTGACCTTCATT
Found at i:86746765 original size:44 final size:45
Alignment explanation
Indices: 86746564--86746831 Score: 258
Period size: 45 Copynumber: 5.9 Consensus size: 45
86746554 GATCCAAGAT
* *
86746564 GATTTGGCATCTTTGTATTAGACGGGGAGCAGATCGAAGAAATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * *
86746611 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* *
86746656 GATTTGGCATCTCTGTATTAGACGGGGAGCA-AACCAGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGA-AGATAACA
* * *
86746701 GATTTGGCATCTCTGTATTAGACGAGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
86746745 AATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * * *
86746790 GATTTGGCGTCTCTGTATTAGATGGAGAGCAGATCAAAGATA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATA
86746832 GCATATATCG
Statistics
Matches: 180, Mismatches: 32, Indels: 20
0.78 0.14 0.09
Matches are distributed among these distances:
43 1 0.01
44 47 0.26
45 100 0.56
46 5 0.03
47 22 0.12
48 4 0.02
49 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:86746820 original size:89 final size:90
Alignment explanation
Indices: 86746565--86746829 Score: 288
Period size: 89 Copynumber: 2.9 Consensus size: 90
86746555 ATCCAAGATG
* * * * * *
86746565 ATTTGGCATCTTTGTATTAGACGGGGAGCAGATCGAAGAAATAGCAGATCTGACCT-TCATGTGT
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACAGATTTGGCATCTC-TGT-A
* * *
86746629 TTACATCGA-AGCAGATCCAAGATGACAG
62 TTAGATCGAGAGCAGATCCAAGAAGACAA
* *
86746657 ATTTGGCATCTCTGTATTAGACGGGGAGCA-AACCAGAGATAACAGATTTGGCATCTCTGTATTA
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGA-AGATAACAGATTTGGCATCTCTGTATTA
**
86746721 GA-CGAGGAGCAGATTGAAGAAG-CAA
65 GATCGA-GAGCAGATCCAAGAAGACAA
* *
86746746 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAG
* *
86746811 ATGGAGAGCAGATCAAAGA
66 ATCGAGAGCAGATCCAAGA
86746830 TAGCATATAT
Statistics
Matches: 147, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
88 3 0.02
89 76 0.52
90 32 0.22
91 5 0.03
92 31 0.21
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (90 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAG
ATCGAGAGCAGATCCAAGAAGACAA
Found at i:86747201 original size:17 final size:19
Alignment explanation
Indices: 86747179--86747257 Score: 94
Period size: 19 Copynumber: 4.4 Consensus size: 19
86747169 ATGGAAATAT
86747179 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
86747196 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
* *
86747215 AATCTTAGATATGACA--C
1 AATCTTACATATGATATGC
*
86747232 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
86747251 AATCTTA
1 AATCTTA
86747258 GAAGATATGA
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
17 22 0.40
18 1 0.02
19 32 0.58
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:86747219 original size:36 final size:34
Alignment explanation
Indices: 86747189--86747259 Score: 117
Period size: 36 Copynumber: 2.1 Consensus size: 34
86747179 AATCTTCAAT
86747189 GATATG-CAATCTTAGATATGATATGCAATCTTA
1 GATATGACAATCTTAGATATGATATGCAATCTTA
86747222 GATATGACACAATCTTAGATATGATATGCAATCTTA
1 GATATG--ACAATCTTAGATATGATATGCAATCTTA
86747258 GA
1 GA
86747260 AGATATGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
33 6 0.17
36 29 0.83
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (34 bp):
GATATGACAATCTTAGATATGATATGCAATCTTA
Found at i:86747266 original size:17 final size:19
Alignment explanation
Indices: 86747187--86747259 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
86747177 ATAATCTTCA
86747187 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86747206 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
86747225 ATGACA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
86747242 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
86747260 AGATATGATT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
17 16 0.32
19 34 0.68
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.34
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:86747285 original size:22 final size:22
Alignment explanation
Indices: 86747187--86747282 Score: 79
Period size: 19 Copynumber: 4.8 Consensus size: 22
86747177 ATAATCTTCA
86747187 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
86747206 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
86747225 ATGACA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
86747242 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
86747264 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
86747283 GATTTAATTT
Statistics
Matches: 67, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
17 16 0.24
19 31 0.46
22 8 0.12
23 12 0.18
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:86747569 original size:17 final size:17
Alignment explanation
Indices: 86747549--86747582 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
86747539 ATATTTCCCT
86747549 ATTTTTT-ATATATTTTA
1 ATTTTTTAATA-ATTTTA
86747566 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
86747583 GTATCATATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:86753019 original size:327 final size:327
Alignment explanation
Indices: 86752406--86753052 Score: 983
Period size: 327 Copynumber: 2.0 Consensus size: 327
86752396 AATCTTGAAC
86752406 CTAGAGCCTCATGAAACTTCTTCCAGAACTGAGACATGAAACGAGGATCCCTATCAGAAATGATC
1 CTAGAGCCTCATGAAACTTCTTCCAGAACTGAGACATGAAACGAGGATCCCTATCAGAAATGATC
*
86752471 GAGACAGGTACCCCATACAGTCTTATTATTTCCAAGATGTAGAGCTTAGCTAACTTCTAAAGAGA
66 GAGACAAGTACCCCATACAGTCTTATTATTTCCAAGATGTAGAGCTTAGCTAACTTCTAAAGAGA
*
86752536 AAAGTCTGTCTTTACCGGGATGAAGTGAGCAAACTAGGTCAATCGATCCACGATGACCCAGACAG
131 AAAGTCTGTCTTTACCGGGATAAAGTGAGCAAACTAGGTCAATCGATCCACGATGACCCAGACAG
* * * *
86752601 AATTCTTTTTAATCAGTGTTAGAGGTAACCCACTAACGAAGTCCATCGTTACTCGTTTCCATTTC
196 AATCCTTCTTAATCAGTGTTAGAAGTAACCCACTAACGAAGTCCATCGTTACTCGCTTCCATTTC
* * * * *
86752666 CATAACTGTATCGACTGTAGCAAACCCGAAGGTAACTAATGCTTAGCCTTAACCTACTGATAAAC
261 CATAACGGTATAGACTGTAACAAACCCGAAAGTAACTAATGCTCAGCCTTAACCTACTGATAAAC
86752731 AA
326 AA
* * **
86752733 CTAGAGCCTCATGAAGCTTCTTCTAGAACTGAGATGTGAAACGAGGAT-CCTAATCAGAAATGAT
1 CTAGAGCCTCATGAAACTTCTTCCAGAACTGAGACATGAAACGAGGATCCCT-ATCAGAAATGAT
* *
86752797 CGAGACAAGTACCCCCTACAGTCTTATTATTTCCAAGATGTAGAGCTTAGCTAACTTCTGAAGAG
65 CGAGACAAGTACCCCATACAGTCTTATTATTTCCAAGATGTAGAGCTTAGCTAACTTCTAAAGAG
* * * * *
86752862 AAAAGTTTAT-TCTTACCGGGATAAAGTGAGCAGACTTGGTCAATCGATCCACGATGACCCTGAC
130 AAAAGTCTGTCT-TTACCGGGATAAAGTGAGCAAACTAGGTCAATCGATCCACGATGACCCAGAC
* ** *
86752926 AGAATCCTTCTTAGTGGGTGTTAGAAGTAACCCACTAACGAAGTCCATTGTTACTCGCTTCCATT
194 AGAATCCTTCTTAATCAGTGTTAGAAGTAACCCACTAACGAAGTCCATCGTTACTCGCTTCCATT
** * * *
86752991 TCCATAACGGTATAGGTTGTAACAAACCCGAAAGTAATTGATGCTCAGCCTTAACCTGCTGA
259 TCCATAACGGTATAGACTGTAACAAACCCGAAAGTAACTAATGCTCAGCCTTAACCTACTGA
86753053 CAAGTCAAAC
Statistics
Matches: 287, Mismatches: 31, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
326 4 0.01
327 283 0.99
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (327 bp):
CTAGAGCCTCATGAAACTTCTTCCAGAACTGAGACATGAAACGAGGATCCCTATCAGAAATGATC
GAGACAAGTACCCCATACAGTCTTATTATTTCCAAGATGTAGAGCTTAGCTAACTTCTAAAGAGA
AAAGTCTGTCTTTACCGGGATAAAGTGAGCAAACTAGGTCAATCGATCCACGATGACCCAGACAG
AATCCTTCTTAATCAGTGTTAGAAGTAACCCACTAACGAAGTCCATCGTTACTCGCTTCCATTTC
CATAACGGTATAGACTGTAACAAACCCGAAAGTAACTAATGCTCAGCCTTAACCTACTGATAAAC
AA
Found at i:86756571 original size:25 final size:25
Alignment explanation
Indices: 86756543--86756605 Score: 117
Period size: 25 Copynumber: 2.5 Consensus size: 25
86756533 CAGTTTCGCT
86756543 AATGTTTTCAGTATACAATATCTAC
1 AATGTTTTCAGTATACAATATCTAC
*
86756568 AATGTTTTCAGTATACACTATCTAC
1 AATGTTTTCAGTATACAATATCTAC
86756593 AATGTTTTCAGTA
1 AATGTTTTCAGTA
86756606 CAGTGTACTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (25 bp):
AATGTTTTCAGTATACAATATCTAC
Found at i:86763706 original size:13 final size:13
Alignment explanation
Indices: 86763688--86763712 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86763678 GGGTACTCCC
86763688 AATTATGGACCTA
1 AATTATGGACCTA
86763701 AATTATGGACCT
1 AATTATGGACCT
86763713 TACAAAACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
AATTATGGACCTA
Found at i:86763947 original size:15 final size:15
Alignment explanation
Indices: 86763924--86763955 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
86763914 CATTTCACTA
86763924 TTATATTTTTTGTAT
1 TTATATTTTTTGTAT
*
86763939 TTATGTTTTTTGTAT
1 TTATATTTTTTGTAT
86763954 TT
1 TT
86763956 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.75
Consensus pattern (15 bp):
TTATATTTTTTGTAT
Found at i:86766739 original size:29 final size:29
Alignment explanation
Indices: 86766679--86766752 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 29
86766669 GTTGTGTAGA
**
86766679 GTGTGACAGCCCGTGTGCGTCACACGGTC
1 GTGTGACAGCCCGTGTGCGTCACACGACC
* * * *
86766708 GTGTGGCAGCCTGTGTGTGTGACACGACC
1 GTGTGACAGCCCGTGTGCGTCACACGACC
*
86766737 GTGTGATAGCCCGTGT
1 GTGTGACAGCCCGTGT
86766753 CCTAGGTCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.14, C:0.26, G:0.36, T:0.24
Consensus pattern (29 bp):
GTGTGACAGCCCGTGTGCGTCACACGACC
Found at i:86770525 original size:21 final size:21
Alignment explanation
Indices: 86770491--86770530 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
86770481 CTTACTTCAA
*
86770491 ATTTTCTTATTTTTACTTTTAT
1 ATTTTCTTAATTTTA-TTTTAT
86770513 ATTTT-TTAATTTTATTTT
1 ATTTTCTTAATTTTATTTT
86770531 GCATTATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 8 0.47
22 5 0.29
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (21 bp):
ATTTTCTTAATTTTATTTTAT
Found at i:86770677 original size:22 final size:23
Alignment explanation
Indices: 86770629--86770679 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
86770619 ATTATATTTT
**
86770629 AATTTTTATAATAGTAAAAATGT
1 AATTTTTATAATAGTAAAAATAA
* *
86770652 AATTTTTA-AATAGTTAAATTAA
1 AATTTTTATAATAGTAAAAATAA
86770674 AATTTT
1 AATTTT
86770680 AAAAATTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (23 bp):
AATTTTTATAATAGTAAAAATAA
Found at i:86778302 original size:18 final size:18
Alignment explanation
Indices: 86778279--86778313 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
86778269 AAAAGATGTA
86778279 TTAATTAATCAAGCCAAT
1 TTAATTAATCAAGCCAAT
86778297 TTAATTAATCAAGCCAA
1 TTAATTAATCAAGCCAA
86778314 ACAAGTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.17, G:0.06, T:0.31
Consensus pattern (18 bp):
TTAATTAATCAAGCCAAT
Found at i:86778855 original size:7 final size:7
Alignment explanation
Indices: 86778843--86778875 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
86778833 AATTATAAAA
86778843 AAAATTT
1 AAAATTT
86778850 AAAATTT
1 AAAATTT
86778857 AAAATTT
1 AAAATTT
86778864 AAAATTT
1 AAAATTT
86778871 AAAAT
1 AAAAT
86778876 CATTCAGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (7 bp):
AAAATTT
Found at i:86780879 original size:19 final size:19
Alignment explanation
Indices: 86780844--86780899 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
86780834 ATATACTTAA
* *
86780844 ATATTAAGTAAACATAT-T
1 ATATTAAATATACATATGT
*
86780862 TTATTAATATATACATATGT
1 ATATTAA-ATATACATATGT
*
86780882 ATATTAAATTTACATATG
1 ATATTAAATATACATATG
86780900 CAATCACTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 6 0.19
19 18 0.58
20 7 0.23
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (19 bp):
ATATTAAATATACATATGT
Found at i:86783193 original size:27 final size:27
Alignment explanation
Indices: 86783163--86783217 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
86783153 TATTCAAATT
*
86783163 CTTCCTTGAGTTAAACCTCTGATCCCC
1 CTTCCTTGAGTTAAACCTATGATCCCC
86783190 CTTCCTTGAGTTAAACCTATGATCCCC
1 CTTCCTTGAGTTAAACCTATGATCCCC
86783217 C
1 C
86783218 AATCACATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.20, C:0.36, G:0.11, T:0.33
Consensus pattern (27 bp):
CTTCCTTGAGTTAAACCTATGATCCCC
Done.