Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 266 of 325
Found at i:86786741 original size:21 final size:20
Alignment explanation
Indices: 86786704--86786752 Score: 53
Period size: 24 Copynumber: 2.2 Consensus size: 20
86786694 GGTTTAAAAC
*
86786704 AAATAAATTATTAAAAATAA
1 AAATAAAATATTAAAAATAA
86786724 AAATAAAAATATTCAAAATTATAA
1 AAAT-AAAATATT-AAAA--ATAA
86786748 AAATA
1 AAATA
86786753 GGTGTCAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 4 0.17
21 7 0.29
22 4 0.17
23 1 0.04
24 8 0.33
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
AAATAAAATATTAAAAATAA
Found at i:86786948 original size:16 final size:17
Alignment explanation
Indices: 86786929--86786960 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
86786919 TTTTATTTAA
86786929 ATAATTTT-TATTTTTC
1 ATAATTTTATATTTTTC
86786945 ATAATTTTATATTTTT
1 ATAATTTTATATTTTT
86786961 AAGTATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (17 bp):
ATAATTTTATATTTTTC
Found at i:86791481 original size:21 final size:21
Alignment explanation
Indices: 86791456--86791508 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
86791446 AGCGGTGGCA
* *
86791456 GTGAGATTAGTTATTGTAGCG
1 GTGAGATTAGATACTGTAGCG
*
86791477 GTGAGATTGGATACTGTAGCG
1 GTGAGATTAGATACTGTAGCG
86791498 GTGAGATTAGA
1 GTGAGATTAGA
86791509 AACAATGGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.26, C:0.06, G:0.36, T:0.32
Consensus pattern (21 bp):
GTGAGATTAGATACTGTAGCG
Found at i:86795749 original size:22 final size:22
Alignment explanation
Indices: 86795721--86795843 Score: 70
Period size: 22 Copynumber: 5.3 Consensus size: 22
86795711 TTTCACATTC
86795721 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
86795743 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
86795767 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
** * * *
86795790 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
86795814 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
86795837 ATCACAT
1 ATCACAT
86795844 ATATACACTT
Statistics
Matches: 71, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
22 29 0.41
23 10 0.14
24 10 0.14
25 22 0.31
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:86795934 original size:22 final size:22
Alignment explanation
Indices: 86795909--86795984 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
86795899 TTTCACATTC
86795909 ATCACATTGGCCATTCAGCCTT
1 ATCACATTGGCCATTCAGCCTT
** * *
86795931 ATCACATATATACACTTTCA-CATT
1 ATCACAT-T-GGC-CATTCAGCCTT
*
86795955 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCAGCCTT
86795978 ATCACAT
1 ATCACAT
86795985 ATATACACTT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 18 0.45
23 5 0.12
24 5 0.12
25 12 0.30
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCAGCCTT
Found at i:86796189 original size:47 final size:47
Alignment explanation
Indices: 86795411--86796179 Score: 1225
Period size: 47 Copynumber: 16.4 Consensus size: 47
86795401 CCCTTCGGGA
* *
86795411 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * * *
86795458 CTTATCACATATATACACCTTCACATCCATCACATCGGCTATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
86795505 ATTATCTCATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
86795552 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
86795599 CTTATCACATATGTACACTTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
86795646 CTAATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
86795693 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
86795740 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
86795787 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
86795834 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
86795881 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
86795928 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
86795975 CTTATCACATATATACACTTTCACATTCATCACCTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
86796022 CTTATCACATATGTACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
86796069 CTTATCACATATATACACTTTCACAGTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
86796116 CTTATCACATACATACACTTTCACATCCATCACATCGGCCA-TAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
86796162 CTTATCACATATACACAC
1 CTTATCACATATATACAC
86796180 CTTGTACATC
Statistics
Matches: 669, Mismatches: 53, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
46 20 0.03
47 649 0.97
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:86799407 original size:32 final size:32
Alignment explanation
Indices: 86799367--86799519 Score: 216
Period size: 32 Copynumber: 4.8 Consensus size: 32
86799357 AAAAAATATG
* *
86799367 ATACATTAGGTTTACGTATAAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* *
86799399 ATACATTAGTTTTGCATATAAAAAAGTAGATA
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* * *
86799431 ATACATTAGGTTCAGATATAAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* * *
86799463 ATACATTAGTTTTGCAAATGAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
86799495 ATACATTAGTTTTACATATAAAAAA
1 ATACATTAGTTTTACATATAAAAAA
86799520 CTAGCATAAT
Statistics
Matches: 103, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 103 1.00
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.32
Consensus pattern (32 bp):
ATACATTAGTTTTACATATAAAAAAGTAGATC
Found at i:86799993 original size:26 final size:26
Alignment explanation
Indices: 86799956--86800117 Score: 252
Period size: 26 Copynumber: 6.2 Consensus size: 26
86799946 TGATACAAAT
86799956 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
86799982 CGATAATAGGTTCGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
86800008 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
86800034 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
86800060 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
86800086 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
86800112 TGATAA
1 TGATAA
86800118 GAATTTCATG
Statistics
Matches: 126, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 126 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:86801306 original size:8 final size:8
Alignment explanation
Indices: 86801293--86801337 Score: 63
Period size: 8 Copynumber: 5.6 Consensus size: 8
86801283 CTAGATTGGC
86801293 AAAAGCCG
1 AAAAGCCG
86801301 AAAAGCCG
1 AAAAGCCG
*
86801309 AAATGCCG
1 AAAAGCCG
86801317 AAAAGCCG
1 AAAAGCCG
* *
86801325 AAATGTCG
1 AAAAGCCG
86801333 AAAAG
1 AAAAG
86801338 TCAGTATTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.49, C:0.20, G:0.24, T:0.07
Consensus pattern (8 bp):
AAAAGCCG
Found at i:86801318 original size:16 final size:16
Alignment explanation
Indices: 86801297--86801337 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
86801287 ATTGGCAAAA
86801297 GCCGAAAAGCCGAAAT
1 GCCGAAAAGCCGAAAT
86801313 GCCGAAAAGCCGAAAT
1 GCCGAAAAGCCGAAAT
*
86801329 GTCGAAAAG
1 GCCGAAAAG
86801338 TCAGTATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.44, C:0.22, G:0.27, T:0.07
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Found at i:86801794 original size:27 final size:27
Alignment explanation
Indices: 86801753--86801865 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 27
86801743 GAGGAAGTGT
*
86801753 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
86801780 CCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
86801807 TCTGGTGGTTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
86801835 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
86801861 TCTGG
1 TCTGG
86801866 CAGCCATACT
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
26 5 0.07
27 52 0.73
28 14 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:86801832 original size:54 final size:54
Alignment explanation
Indices: 86801750--86801865 Score: 153
Period size: 54 Copynumber: 2.1 Consensus size: 54
86801740 ATGGAGGAAG
*
86801750 TGTTCTGGTGGCTATGCCACAAATATCTG-ACCTGGTGGCTCTGCCACATATATC
1 TGTTCTGGTGGCTATGCCACAAATATCTGTACCTGGTGACTCTGCCACAT-TATC
* * * * * *
86801804 TGTTCTGGTGGTTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACATTATC
1 TGTTCTGGTGGCTATGCCACAAATATCTGTACCTGGTGACTCTGCCACATTATC
86801858 TGTTCTGG
1 TGTTCTGG
86801866 CAGCCATACT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
TGTTCTGGTGGCTATGCCACAAATATCTGTACCTGGTGACTCTGCCACATTATC
Found at i:86805861 original size:26 final size:26
Alignment explanation
Indices: 86805825--86806012 Score: 315
Period size: 26 Copynumber: 7.2 Consensus size: 26
86805815 TGATACAAAT
86805825 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
86805851 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
86805877 CGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
86805903 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
86805929 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
86805955 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
86805981 TGATAAT-GAGTTAGGTAAATGTTTCA
1 TGATAATAG-GTTAGGTAAATGTTCCA
86806007 TGATAA
1 TGATAA
86806013 GAATTTCATG
Statistics
Matches: 155, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
25 1 0.01
26 154 0.99
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:86807204 original size:8 final size:8
Alignment explanation
Indices: 86807188--86807232 Score: 72
Period size: 8 Copynumber: 5.6 Consensus size: 8
86807178 CTAGATTAGC
86807188 AAAAGCCG
1 AAAAGCCG
*
86807196 AAAATCCG
1 AAAAGCCG
86807204 AAAAGCCG
1 AAAAGCCG
86807212 AAAAGCCG
1 AAAAGCCG
*
86807220 AAATGCCG
1 AAAAGCCG
86807228 AAAAG
1 AAAAG
86807233 TCGGTATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.51, C:0.22, G:0.22, T:0.04
Consensus pattern (8 bp):
AAAAGCCG
Found at i:86807691 original size:27 final size:27
Alignment explanation
Indices: 86807648--86807761 Score: 104
Period size: 27 Copynumber: 4.2 Consensus size: 27
86807638 GAGGAAGCGT
*
86807648 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * * *
86807675 CCTGGTGGCTCTACCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
86807702 TCTAGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
86807730 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
86807756 TCTGGT
1 TCTGGT
86807762 AGCCATGCTG
Statistics
Matches: 70, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
26 6 0.09
27 50 0.71
28 14 0.20
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:86807753 original size:54 final size:54
Alignment explanation
Indices: 86807646--86807758 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
86807636 TGGAGGAAGC
* *
86807646 GTTCTGGTGGCTATGCCACAAATATCTGACCTGGTGGCTCTACCACATATATCT
1 GTTCTAGTGGCTATGCCACAAATATCTGACCTGGTGACTCTACCACATATATCT
* * * * **
86807700 GTTCTAGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTAGTGGCTATGCCACAAATATCTG-ACCTGGTGACTCTACCACATATATCT
86807754 GTTCT
1 GTTCT
86807759 GGTAGCCATG
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
54 34 0.68
55 16 0.32
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (54 bp):
GTTCTAGTGGCTATGCCACAAATATCTGACCTGGTGACTCTACCACATATATCT
Found at i:86809373 original size:11 final size:11
Alignment explanation
Indices: 86809357--86809382 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
86809347 AAGAGTTTTC
86809357 CAAACTCAGAT
1 CAAACTCAGAT
86809368 CAAACTCAGAT
1 CAAACTCAGAT
86809379 CAAA
1 CAAA
86809383 AGACATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.27, G:0.08, T:0.15
Consensus pattern (11 bp):
CAAACTCAGAT
Found at i:86809421 original size:72 final size:72
Alignment explanation
Indices: 86809298--86809492 Score: 327
Period size: 72 Copynumber: 2.7 Consensus size: 72
86809288 TCTATCACAG
* * *
86809298 AACTCAGATCAAAAGAAATTATTAAGCTGAAACCTATAAAAAAACACTAAAGAGTTTTCCAAACT
1 AACTCAGATCAAAAGACATTATTGAGCTGAAACCTATAAAAAAGCACTAAAGAGTTTTCCAAACT
86809363 CAGATCA
66 CAGATCA
* *
86809370 AACTCAGATCAAAAGACATTATTGAGCTGAAACCTATAAAAAAGCAGTAAAGAGTTTTCCGAACT
1 AACTCAGATCAAAAGACATTATTGAGCTGAAACCTATAAAAAAGCACTAAAGAGTTTTCCAAACT
86809435 CAGATCA
66 CAGATCA
*
86809442 AACTCAGATCAAAAGACATTATTGAGCTGGAACCTATCAAAAAAGCACTAA
1 AACTCAGATCAAAAGACATTATTGAGCTGAAACCTAT-AAAAAAGCACTAA
86809493 TATATACACA
Statistics
Matches: 115, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
72 103 0.90
73 12 0.10
ACGTcount: A:0.47, C:0.18, G:0.13, T:0.22
Consensus pattern (72 bp):
AACTCAGATCAAAAGACATTATTGAGCTGAAACCTATAAAAAAGCACTAAAGAGTTTTCCAAACT
CAGATCA
Found at i:86814207 original size:6 final size:6
Alignment explanation
Indices: 86814198--86814247 Score: 73
Period size: 6 Copynumber: 8.3 Consensus size: 6
86814188 TGTTTTTTTC
* * *
86814198 CATACA CATACA CATACA CATACA CATACA CACACA CACACA CACACA
1 CATACA CATACA CATACA CATACA CATACA CATACA CATACA CATACA
86814246 CA
1 CA
86814248 CATATATATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.50, C:0.40, G:0.00, T:0.10
Consensus pattern (6 bp):
CATACA
Found at i:86814232 original size:2 final size:2
Alignment explanation
Indices: 86814201--86814249 Score: 62
Period size: 2 Copynumber: 24.5 Consensus size: 2
86814191 TTTTTTCCAT
* * * *
86814201 AC AC AT AC AC AT AC AC AT AC AC AT AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
86814243 AC AC AC A
1 AC AC AC A
86814250 TATATATATT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.41, G:0.00, T:0.08
Consensus pattern (2 bp):
AC
Found at i:86820427 original size:13 final size:13
Alignment explanation
Indices: 86820411--86820463 Score: 72
Period size: 13 Copynumber: 4.1 Consensus size: 13
86820401 TTTAAACCAA
86820411 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
86820424 ACTTTTCCACAA-C
1 ACTTTT-CAAAAGC
*
86820437 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
86820450 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
86820463 A
1 A
86820464 TTGCCAAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 4 0.12
13 26 0.76
14 4 0.12
ACGTcount: A:0.38, C:0.28, G:0.06, T:0.28
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:86820889 original size:26 final size:25
Alignment explanation
Indices: 86820846--86820894 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
86820836 AACAATAGGC
86820846 TTTTTATATATTTTTAATTGTATATT
1 TTTTTATATATTTTTAATT-TATATT
86820872 TTTTTATAT-TTTTATAATTTATA
1 TTTTTATATATTTT-TAATTTATA
86820895 AATTTATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (25 bp):
TTTTTATATATTTTTAATTTATATT
Found at i:86820892 original size:15 final size:15
Alignment explanation
Indices: 86820874--86820925 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
86820864 TGTATATTTT
86820874 TTTATATTTTTATAA
1 TTTATATTTTTATAA
**
86820889 TTTATAAATTTATAA
1 TTTATATTTTTATAA
*
86820904 ATTATAACTTTTTATATA
1 TTTAT-A-TTTTTATA-A
86820922 TTTA
1 TTTA
86820926 AAATAATAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
15 17 0.61
16 1 0.04
17 6 0.21
18 4 0.14
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTATATTTTTATAA
Found at i:86820934 original size:24 final size:25
Alignment explanation
Indices: 86820889--86820935 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86820879 ATTTTTATAA
*
86820889 TTTATAAATTTATAAATTATAACTT
1 TTTATAAATTTATAAATAATAACTT
*
86820914 TTTATATATTTA-AAATAATAAC
1 TTTATAAATTTATAAATAATAAC
86820936 CTAAAAATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (25 bp):
TTTATAAATTTATAAATAATAACTT
Found at i:86826868 original size:21 final size:22
Alignment explanation
Indices: 86826842--86826895 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
86826832 TAGCCTCCAG
**
86826842 CACGGGCGTGT-CCTAGGGTCA
1 CACGGGCGTGTCCCTAGGACCA
* *
86826863 CACGGGCATGTCCCTTGGACCA
1 CACGGGCGTGTCCCTAGGACCA
86826885 CACGGGCGTGT
1 CACGGGCGTGT
86826896 GAGCCTTGCA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19
Consensus pattern (22 bp):
CACGGGCGTGTCCCTAGGACCA
Found at i:86829360 original size:27 final size:26
Alignment explanation
Indices: 86829304--86829360 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
86829294 CAACCTTAAC
* *
86829304 CCTAGGGGTATATTAGTAATTTTACT
1 CCTAGGGGTAAATTAGTAATTTTACA
*
86829330 CCTAGGGGTAAATCT-GTAAATTTTCCA
1 CCTAGGGGTAAAT-TAGT-AATTTTACA
86829357 CCTA
1 CCTA
86829361 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATTAGTAATTTTACA
Found at i:86840368 original size:13 final size:14
Alignment explanation
Indices: 86840342--86840374 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
86840332 ATAAAATATA
86840342 AATTTATATTTAAT
1 AATTTATATTTAAT
86840356 AATTTAT-TTTAAT
1 AATTTATATTTAAT
86840369 ATATTT
1 A-ATTT
86840375 CATTAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
AATTTATATTTAAT
Found at i:86853193 original size:11 final size:11
Alignment explanation
Indices: 86853177--86853209 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
86853167 CTATGGGTGG
86853177 AAACATGTTGT
1 AAACATGTTGT
86853188 AAACATGTTGT
1 AAACATGTTGT
86853199 AAACATGTTGT
1 AAACATGTTGT
86853210 GTAGTGTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36
Consensus pattern (11 bp):
AAACATGTTGT
Found at i:86863985 original size:40 final size:40
Alignment explanation
Indices: 86863941--86864016 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
86863931 AGTGCCTCGC
* *
86863941 ATAGCCAAAGCTGTTCT-AATTTGCACACTTAGTGCTATTT
1 ATAGCCAAAGCTATTCTGAA-TCGCACACTTAGTGCTATTT
* *
86863981 ATAGCCGAAGCTATTTTGAATCGCACACTTAGTGCT
1 ATAGCCAAAGCTATTCTGAATCGCACACTTAGTGCT
86864017 GAACATAATC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 29 0.94
41 2 0.06
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (40 bp):
ATAGCCAAAGCTATTCTGAATCGCACACTTAGTGCTATTT
Found at i:86867730 original size:50 final size:50
Alignment explanation
Indices: 86867631--86867730 Score: 130
Period size: 50 Copynumber: 2.0 Consensus size: 50
86867621 ATGTTTTCGG
* *
86867631 AATGTCTGAACCTTTTACTCACAAATGATAATAACCTAATATCATATCTA
1 AATGTCTGAACCTTTTACTCACAAATGATAATAACCCAATATCAGATCTA
* * * *
86867681 AATGTCTGAATCC-TTTACTCGCAACTGATAATAACCCGATCTCAGATCTA
1 AATGTCTGAA-CCTTTTACTCACAAATGATAATAACCCAATATCAGATCTA
86867731 TCTTTGAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 41 0.95
51 2 0.05
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (50 bp):
AATGTCTGAACCTTTTACTCACAAATGATAATAACCCAATATCAGATCTA
Found at i:86879081 original size:12 final size:12
Alignment explanation
Indices: 86879064--86879111 Score: 60
Period size: 12 Copynumber: 4.0 Consensus size: 12
86879054 CCAACAATTT
86879064 TCTCCTAAAATC
1 TCTCCTAAAATC
* *
86879076 TCTCCTCATATC
1 TCTCCTAAAATC
86879088 TCTCCTAAAATC
1 TCTCCTAAAATC
* *
86879100 CCTCCTACAATC
1 TCTCCTAAAATC
86879112 CTTCCATGAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.27, C:0.40, G:0.00, T:0.33
Consensus pattern (12 bp):
TCTCCTAAAATC
Found at i:86880449 original size:23 final size:22
Alignment explanation
Indices: 86880423--86880465 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
86880413 CCCATGCAAT
86880423 GCAACATA-ATATTATACATGGAG
1 GCAACATACATA-TA-ACATGGAG
86880446 GCAACATACATATAACATGG
1 GCAACATACATATAACATGG
86880466 CATGCTCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.32
23 10 0.53
24 3 0.16
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.23
Consensus pattern (22 bp):
GCAACATACATATAACATGGAG
Found at i:86880552 original size:27 final size:26
Alignment explanation
Indices: 86880528--86880603 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 26
86880518 TTACCCTACA
*
86880528 GGGGTATTTCGGTCATTCTATCCTAT
1 GGGGTATTTCGGTCATTTTATCCTAT
* *
86880554 GGAGGTATTTCAGTCATTTTACCCTAT
1 GG-GGTATTTCGGTCATTTTATCCTAT
*
86880581 GAAGGTATTTCGGTCATTTTATC
1 G-GGGTATTTCGGTCATTTTATC
86880604 ACATAAAGGC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 2 0.05
27 40 0.95
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (26 bp):
GGGGTATTTCGGTCATTTTATCCTAT
Found at i:86880612 original size:27 final size:26
Alignment explanation
Indices: 86880530--86880666 Score: 89
Period size: 27 Copynumber: 5.1 Consensus size: 26
86880520 ACCCTACAGG
* **
86880530 GGTATTTCGGTCATTCTATC-CTATGGA
1 GGTATTTC-GTCATTTTATCAC-ATAAA
* *
86880557 GGTATTTCAGTCATTTTA-CCCTATGAA
1 GGTATTTC-GTCATTTTATCAC-ATAAA
86880584 GGTATTTCGGTCATTTTATCACATAAA
1 GGTATTTC-GTCATTTTATCACATAAA
* ** *
86880611 GGCAAAATCGCCATTTTATCACATAAA
1 GG-TATTTCGTCATTTTATCACATAAA
* **
86880638 GGCAAAATCGTCATTTTATCACATAAA
1 GG-TATTTCGTCATTTTATCACATAAA
86880665 GG
1 GG
86880667 CAAAATTGTC
Statistics
Matches: 96, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.01
27 90 0.94
28 5 0.05
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (26 bp):
GGTATTTCGTCATTTTATCACATAAA
Found at i:86880667 original size:27 final size:27
Alignment explanation
Indices: 86880593--86880748 Score: 240
Period size: 27 Copynumber: 5.8 Consensus size: 27
86880583 AGGTATTTCG
86880593 GTCATTTTATCACATAAAGGCAAAATC
1 GTCATTTTATCACATAAAGGCAAAATC
*
86880620 GCCATTTTATCACATAAAGGCAAAATC
1 GTCATTTTATCACATAAAGGCAAAATC
*
86880647 GTCATTTTATCACATAAAGGCAAAATT
1 GTCATTTTATCACATAAAGGCAAAATC
* * *
86880674 GTCATTTTATCATATAAGGGCAAAATT
1 GTCATTTTATCACATAAAGGCAAAATC
* *
86880701 GTCATTTTATCACACAAGGGCAAAATC
1 GTCATTTTATCACATAAAGGCAAAATC
*
86880728 GTCATTTTATCACATGAAGGC
1 GTCATTTTATCACATAAAGGC
86880749 TCAGGTACGT
Statistics
Matches: 118, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (27 bp):
GTCATTTTATCACATAAAGGCAAAATC
Found at i:86896656 original size:34 final size:34
Alignment explanation
Indices: 86896617--86896689 Score: 146
Period size: 34 Copynumber: 2.1 Consensus size: 34
86896607 ACATGTCTGG
86896617 GACATACATCGCCTTGAGATGTAAGCCAGTGTAA
1 GACATACATCGCCTTGAGATGTAAGCCAGTGTAA
86896651 GACATACATCGCCTTGAGATGTAAGCCAGTGTAA
1 GACATACATCGCCTTGAGATGTAAGCCAGTGTAA
86896685 GACAT
1 GACAT
86896690 GCCATGTCTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (34 bp):
GACATACATCGCCTTGAGATGTAAGCCAGTGTAA
Found at i:86903775 original size:5 final size:5
Alignment explanation
Indices: 86903760--86903797 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
86903750 AGTATAAATA
86903760 TATTT TA-TT TATTT TATTT TATTT TATTT TATTT TATT
1 TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATT
86903798 ATTTTAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TATTT
Found at i:86907500 original size:50 final size:50
Alignment explanation
Indices: 86907402--86907638 Score: 242
Period size: 50 Copynumber: 4.7 Consensus size: 50
86907392 ATGAGAACAC
* ** * * *
86907402 GTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACGGTT-TTAGGTCACGT
1 GTGTAGTACTAAGTGCAGGCTACTATGTG--TACCA-GATTGTTAGATCACAT
* *
86907454 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACAT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGATCACAT
** * * * *
86907504 GTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATATCTTCGATCACGT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-TGTTAGATCACAT
* * * *
86907555 GTGTAGTACTACGTGCAGGCTACTACGTGTACCAGAATGTTAGATCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGATCACAT
* * *
86907605 GTGTAGTACTAAGCGCATGCTGCTATGTGTACCA
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
86907639 AAGAGCTTTG
Statistics
Matches: 154, Mismatches: 29, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
49 3 0.02
50 84 0.55
51 40 0.26
52 27 0.18
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (50 bp):
GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGATCACAT
Found at i:86907578 original size:101 final size:101
Alignment explanation
Indices: 86907448--86907631 Score: 305
Period size: 101 Copynumber: 1.8 Consensus size: 101
86907438 CGGTTTTAGG
* *
86907448 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAATGTTAGATCACATGTGTAGTAC
*
86907513 TAAGTGCAGGCTACTATGCATACCCGATATCTTCGA
66 TAAGCGCAGGCTACTATGCATACCCGATATCTTCGA
* *
86907549 TCACGTGTGTAGTACTACGTGCAGGCTACTACGTGTACCAGAATGTTAGATCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAATGTTAGATCACATGTGTAGTAC
* *
86907614 TAAGCGCATGCTGCTATG
66 TAAGCGCAGGCTACTATG
86907632 TGTACCAAAG
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 76 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAATGTTAGATCACATGTGTAGTAC
TAAGCGCAGGCTACTATGCATACCCGATATCTTCGA
Found at i:86907675 original size:101 final size:101
Alignment explanation
Indices: 86907469--86907675 Score: 216
Period size: 101 Copynumber: 2.0 Consensus size: 101
86907459 GTACTAAGTG
* * *
86907469 CAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCAT
1 CAGGCTACTACGTGTACCAGAATGTTAGATCACATGTGTAGTACTAAGCGCAGGCTACTATGCAT
** * * ** * * *
86907534 ACCCGATATCTTCGATCACGTGTGTAGTACTACGTG
66 ACCAAAGAGCTTCGATCACAAGGGTAGTAATACGTA
* * * **
86907570 CAGGCTACTACGTGTACCAGAATGTTAGATCGCATGTGTAGTACTAAGCGCATGCTGCTATGTGT
1 CAGGCTACTACGTGTACCAGAATGTTAGATCACATGTGTAGTACTAAGCGCAGGCTACTATGCAT
* * * * *
86907635 ACCAAAGAGCTTTGGTTACAAGGGTGGTAATATGTA
66 ACCAAAGAGCTTCGATCACAAGGGTAGTAATACGTA
86907671 CAGGC
1 CAGGC
86907676 CACTGGGTAT
Statistics
Matches: 84, Mismatches: 22, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
101 84 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (101 bp):
CAGGCTACTACGTGTACCAGAATGTTAGATCACATGTGTAGTACTAAGCGCAGGCTACTATGCAT
ACCAAAGAGCTTCGATCACAAGGGTAGTAATACGTA
Found at i:86925529 original size:170 final size:172
Alignment explanation
Indices: 86925242--86925588 Score: 644
Period size: 170 Copynumber: 2.0 Consensus size: 172
86925232 AATGCTTAGG
* *
86925242 ATTGAGAGTGTTGGGTTTTTACTTTTCCTCATTGCTATTGTCTTCCTACTGTGTGAGTCAAAACA
1 ATTGGGAGTGTTGGGTCTTTACTTTTCCTCATTGCTATTGTCTTCCTACTGTGTGAGTCAAAACA
*
86925307 TTTTTTGTGCATTGGACTTAGGTTGTTGTTTGGCTTGATTTAAGTTGTTGCATGTGATAATTGAC
66 TTTTTTGTGCATTGGACTTAGGTTGTTGTTTGGCTTGATTTAAGTTGTTGCATGCGATAATTGAC
*
86925372 CTTTTTTTTGAA-ATCAATCCTCTTTCCAACGGAGT-GAGTC
131 CTTTTTTTTCAAGATCAATCCTCTTTCCAACGGAGTGGAGTC
86925412 ATTGGGAGTGTTGGGTCTTTACTTTTCCTCATTGCTATTGTCTTCCTACTGTGTGAGTCAAAACA
1 ATTGGGAGTGTTGGGTCTTTACTTTTCCTCATTGCTATTGTCTTCCTACTGTGTGAGTCAAAACA
86925477 TTTTTTGTGCATTGGACTTAGGTTGTTGTTTGGCTTGATTTAAGTTGTTGCATGCGATAATTGAC
66 TTTTTTGTGCATTGGACTTAGGTTGTTGTTTGGCTTGATTTAAGTTGTTGCATGCGATAATTGAC
86925542 CTTTTTTTTCAAGATCAATCCTCTTTCCAACGGAGTGGAGTC
131 CTTTTTTTTCAAGATCAATCCTCTTTCCAACGGAGTGGAGTC
86925584 ATTGG
1 ATTGG
86925589 TGGCCATGGT
Statistics
Matches: 171, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
170 138 0.81
171 23 0.13
172 10 0.06
ACGTcount: A:0.19, C:0.15, G:0.22, T:0.44
Consensus pattern (172 bp):
ATTGGGAGTGTTGGGTCTTTACTTTTCCTCATTGCTATTGTCTTCCTACTGTGTGAGTCAAAACA
TTTTTTGTGCATTGGACTTAGGTTGTTGTTTGGCTTGATTTAAGTTGTTGCATGCGATAATTGAC
CTTTTTTTTCAAGATCAATCCTCTTTCCAACGGAGTGGAGTC
Found at i:86928332 original size:11 final size:11
Alignment explanation
Indices: 86928316--86928358 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
86928306 GTAGGTTAGA
86928316 AATAAAATATT
1 AATAAAATATT
**
86928327 AATAAAATTAGA
1 AATAAAA-TATT
86928339 AATAAAATATT
1 AATAAAATATT
86928350 AATAAAATA
1 AATAAAATA
86928359 AATGTTTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:86928338 original size:23 final size:23
Alignment explanation
Indices: 86928311--86928357 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
86928301 TATTAGTAGG
86928311 TTAGAAATAAAATATTAATAAAA
1 TTAGAAATAAAATATTAATAAAA
86928334 TTAGAAATAAAATATTAATAAAA
1 TTAGAAATAAAATATTAATAAAA
86928357 T
1 T
86928358 AAATGTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (23 bp):
TTAGAAATAAAATATTAATAAAA
Found at i:86932625 original size:18 final size:18
Alignment explanation
Indices: 86932599--86932641 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
86932589 GGTTAGGAAA
* *
86932599 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
86932617 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
86932635 AGGATAC
1 AGGATAC
86932642 GCACCTGACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.42, C:0.09, G:0.28, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:86934297 original size:48 final size:46
Alignment explanation
Indices: 86934221--86934350 Score: 147
Period size: 48 Copynumber: 2.8 Consensus size: 46
86934211 ATGCAAACAT
* **
86934221 CATAAATGAAAAAAAATCAAGCAGTATTGAAATTGTAATTATAA-TTG
1 CATAAATGAAAAAATATCAAATAGTATTGAAATT-TAATTA-AATTTG
* *
86934268 TATAAATGAATAAAATATCAAATAATATTGCAAATTTAATTAAATTTG
1 CATAAATGAA-AAAATATCAAATAGTATTG-AAATTTAATTAAATTTG
*
86934316 CATAAATTAAAAAAATATC-AATAGTATTGAAATTT
1 CATAAA-TGAAAAAATATCAAATAGTATTGAAATTT
86934351 TAAAATTATC
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
46 6 0.08
47 20 0.28
48 37 0.52
49 8 0.11
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.34
Consensus pattern (46 bp):
CATAAATGAAAAAATATCAAATAGTATTGAAATTTAATTAAATTTG
Found at i:86935592 original size:70 final size:70
Alignment explanation
Indices: 86935455--86935674 Score: 246
Period size: 70 Copynumber: 3.1 Consensus size: 70
86935445 AACTCTTCTC
* * *
86935455 CCAAAAATACTAAACTGCTTTAATCAAGAAAA-AATATTATAAAAATAAAATTATTATTTTATTA
1 CCAAAAATACTAAATTGTTTTAATCAA-AAAATATTATTATAAAAATAAAATTATTATTTTATTA
86935519 TACATA
65 TACATA
* * * *
86935525 CCAAAAACACTAAATTGTTTTATTCACAAAAATATTATTATAAAACTAAAATTATT-TTTTGTTA
1 CCAAAAATACTAAATTGTTTTAATCA-AAAAATATTATTATAAAAATAAAATTATTATTTTATTA
86935589 TACATA
65 TACATA
* * * * * * *
86935595 CCACAAATATTAAATTGTTTTACTAAAAAACCATTATTATTATAAAAATAAAAATATTATCTTAC
1 CCAAAAATACTAAATTGTTTTAATCAAAAA--A-TATTATTATAAAAATAAAATTATTATTTTAT
86935660 TATACATA
63 TATACATA
*
86935668 CAAAAAA
1 CCAAAAA
86935675 ATTCAACATA
Statistics
Matches: 125, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
69 4 0.03
70 60 0.48
71 23 0.18
72 22 0.18
73 16 0.13
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.36
Consensus pattern (70 bp):
CCAAAAATACTAAATTGTTTTAATCAAAAAATATTATTATAAAAATAAAATTATTATTTTATTAT
ACATA
Found at i:86936598 original size:21 final size:22
Alignment explanation
Indices: 86936554--86936612 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 22
86936544 TTTTATTTGA
*
86936554 AAATAA-AAAGTACATTTGAATT
1 AAATAATAAAGT-TATTTGAATT
86936576 AAATAATAAAGTTATTT-AATT
1 AAATAATAAAGTTATTTGAATT
*
86936597 AAA-AATTAAAGCTATT
1 AAATAA-TAAAGTTATT
86936613 CTGTATGCTC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
20 2 0.06
21 16 0.48
22 10 0.30
23 5 0.15
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (22 bp):
AAATAATAAAGTTATTTGAATT
Found at i:86939197 original size:19 final size:18
Alignment explanation
Indices: 86939158--86939199 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
86939148 TGAATCACCG
*
86939158 AATTTTTAAAATATATCA
1 AATTTTTAAAATAAATCA
86939176 AATTTTTGAAGAATAAAT-A
1 AATTTTT-AA-AATAAATCA
86939195 AATTT
1 AATTT
86939200 ATAATTTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 7 0.33
19 8 0.38
20 6 0.29
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (18 bp):
AATTTTTAAAATAAATCA
Found at i:86940305 original size:21 final size:21
Alignment explanation
Indices: 86940275--86940343 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
86940265 CTCACAAAGA
* *
86940275 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
86940295 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
86940316 AAAAAGAGAAGTACCTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
86940337 AAAAAGA
1 AAAAAGA
86940344 AATAAAGTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
20 6 0.14
21 36 0.86
ACGTcount: A:0.54, C:0.10, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:86945991 original size:15 final size:16
Alignment explanation
Indices: 86945962--86945991 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86945952 ATACTAAACG
86945962 ATTTAATATAAAGATA
1 ATTTAATATAAAGATA
86945978 ATTTAATA-AAAGAT
1 ATTTAATATAAAGAT
86945992 TTTTTTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (16 bp):
ATTTAATATAAAGATA
Found at i:86956444 original size:32 final size:31
Alignment explanation
Indices: 86956377--86956444 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 31
86956367 TCAAATTTTG
* * * * **
86956377 AAAACTAAAGGTACTAAAATTGACCAATTTG
1 AAAAGTAAAGGAACTAAAAATGACAAATTAA
86956408 AAAAGTAAAGGAACTAAAAATGAGCAAATTAA
1 AAAAGTAAAGGAACTAAAAATGA-CAAATTAA
86956440 AAAAG
1 AAAAG
86956445 GACTAAATCT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
31 20 0.67
32 10 0.33
ACGTcount: A:0.57, C:0.09, G:0.15, T:0.19
Consensus pattern (31 bp):
AAAAGTAAAGGAACTAAAAATGACAAATTAA
Found at i:86957858 original size:20 final size:21
Alignment explanation
Indices: 86957833--86957871 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
86957823 CTCTTGAAAT
*
86957833 AGGGCAA-ACGCCCGTGTGAA
1 AGGGCAACACGCCCATGTGAA
86957853 AGGGCAACACGCCCATGTG
1 AGGGCAACACGCCCATGTG
86957872 GTCATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.28, C:0.28, G:0.33, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGAA
Found at i:86973492 original size:46 final size:46
Alignment explanation
Indices: 86973348--86973564 Score: 219
Period size: 46 Copynumber: 4.7 Consensus size: 46
86973338 TTTGTGTGCT
* *
86973348 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GATGAGAGCC
* * * *
86973394 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGAGAGCC
*
86973442 AGTGTAAGATATGTCTGGGACATGCATCAGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATG-AGAGCC
* * * * *
86973488 AGTGTAAGACATGTTTGAGACATGCATC-GGCTACGAGA-G-GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGATGAGAGCC
*
86973532 AATGTAAGACCATGTCTGGGACATGGCATCAGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC
86973565 ATTATACCTT
Statistics
Matches: 141, Mismatches: 21, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
44 10 0.07
45 16 0.11
46 61 0.43
47 29 0.21
48 24 0.17
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGAGAGCC
Found at i:86978725 original size:17 final size:17
Alignment explanation
Indices: 86978705--86978737 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
86978695 ACTTATGAAC
86978705 ATTATGTAT-TTTTACTG
1 ATTATGT-TGTTTTACTG
86978722 ATTATGTTGTTTTACT
1 ATTATGTTGTTTTACT
86978738 CGTTTTCACG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.07
17 14 0.93
ACGTcount: A:0.21, C:0.06, G:0.12, T:0.61
Consensus pattern (17 bp):
ATTATGTTGTTTTACTG
Found at i:86988795 original size:48 final size:48
Alignment explanation
Indices: 86988743--86988840 Score: 151
Period size: 48 Copynumber: 2.0 Consensus size: 48
86988733 AAAATATTTT
* *
86988743 TTTCAATTAAAATTATTCATTTGTTTTTGTCAAAAACTAAAATATCCA
1 TTTCAATTAAAATTATTCATTTGTTTTTGTAAAAAACTAAAATACCCA
** *
86988791 TTTCAATTAAAATTATTTGTTTGTTTTTGTAAAAAACTAAACTACCCA
1 TTTCAATTAAAATTATTCATTTGTTTTTGTAAAAAACTAAAATACCCA
86988839 TT
1 TT
86988841 ATTATTCATG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.38, C:0.12, G:0.05, T:0.45
Consensus pattern (48 bp):
TTTCAATTAAAATTATTCATTTGTTTTTGTAAAAAACTAAAATACCCA
Found at i:86991438 original size:39 final size:39
Alignment explanation
Indices: 86991395--86991533 Score: 165
Period size: 39 Copynumber: 3.6 Consensus size: 39
86991385 TATCCACTTT
* *
86991395 TAAGCATATATCACATTACACATATAATCACATAACATC
1 TAAGCATATATCACAATACTCATATAATCACATAACATC
* * *
86991434 TAAGCATATATCAAAATACTCATATAATTACATAACGGTC
1 TAAGCATATATCACAATACTCATATAATCACATAAC-ATC
* *
86991474 -AAGCACATATCACAATACTTATATAATCACATAACAT-
1 TAAGCATATATCACAATACTCATATAATCACATAACATC
* *
86991511 TCAAGCATATGTCGCAATACTCA
1 T-AAGCATATATCACAATACTCA
86991534 AAAACATGTT
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
38 1 0.01
39 80 0.96
40 2 0.02
ACGTcount: A:0.45, C:0.22, G:0.06, T:0.28
Consensus pattern (39 bp):
TAAGCATATATCACAATACTCATATAATCACATAACATC
Found at i:86994926 original size:26 final size:26
Alignment explanation
Indices: 86994887--86994994 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
86994877 TGGTACAAAT
86994887 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
** *
86994913 TGATAATGAATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86994939 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
86994965 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86994991 TGAT
1 TGAT
86994995 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:86996684 original size:54 final size:53
Alignment explanation
Indices: 86996602--86996742 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 53
86996592 AGGAAGCGTC
86996602 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
* *
86996656 CTGGTGGTTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
* *
86996710 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
86996743 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 7 0.09
54 73 0.91
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
Found at i:86996738 original size:32 final size:27
Alignment explanation
Indices: 86996602--86996742 Score: 180
Period size: 27 Copynumber: 5.2 Consensus size: 27
86996592 AGGAAGCGTC
*
86996602 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
* *
86996629 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
* *
86996656 CTGGTGGTTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGAT
*
86996683 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
86996710 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
86996737 CTGGTG
1 CTGGTG
86996743 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
26 9 0.09
27 87 0.88
28 3 0.03
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:86996753 original size:27 final size:27
Alignment explanation
Indices: 86996602--86996760 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
86996592 AGGAAGCGTC
*
86996602 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
86996629 CTGGTGGCTCTACCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* * *
86996656 CTGGTGGTTATGCCACGATTATCTG-AT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
86996683 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
86996710 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
86996737 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
86996761 GCAGCCTCGC
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.09
27 101 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:86999178 original size:24 final size:25
Alignment explanation
Indices: 86999151--86999197 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
86999141 GTATTATGTA
86999151 TATTATAATTAT-TTACTT-ATATTT
1 TATTAT-ATTATATTACTTCATATTT
86999175 TATTATATTATATTACTTCATAT
1 TATTATATTATATTACTTCATAT
86999198 CTTTCAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.24
24 12 0.57
25 4 0.19
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (25 bp):
TATTATATTATATTACTTCATATTT
Found at i:86999295 original size:8 final size:8
Alignment explanation
Indices: 86999282--86999310 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
86999272 ATAATGTTTA
86999282 TATATCTT
1 TATATCTT
86999290 TATATCTT
1 TATATCTT
86999298 TATATCTT
1 TATATCTT
86999306 TATAT
1 TATAT
86999311 TATTTGACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATCTT
Found at i:86999396 original size:22 final size:21
Alignment explanation
Indices: 86999350--86999398 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
86999340 ATATTATTAT
86999350 TTATTA-TATTATTTTTCACAAA
1 TTATTATTATTATTTTTCAC--A
86999372 TTATTATTATTA-TTTT-ACA
1 TTATTATTATTATTTTTCACA
86999391 TTATTATT
1 TTATTATT
86999399 TATATATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 9 0.35
21 2 0.08
22 10 0.38
23 5 0.19
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (21 bp):
TTATTATTATTATTTTTCACA
Found at i:86999441 original size:28 final size:28
Alignment explanation
Indices: 86999401--86999464 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
86999391 TTATTATTTA
* *
86999401 TATATAATTATTATATT-TTTACT-TGTAT
1 TATATATTTATTA-ATTATTTA-TATATAT
86999429 TATATATTTATTAATTATTTATATATAT
1 TATATATTTATTAATTATTTATATATAT
86999457 TATATATT
1 TATATATT
86999465 GTTTTTATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 4 0.12
28 28 0.88
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (28 bp):
TATATATTTATTAATTATTTATATATAT
Found at i:86999447 original size:11 final size:12
Alignment explanation
Indices: 86999329--86999464 Score: 65
Period size: 13 Copynumber: 11.1 Consensus size: 12
86999319 ATTTTAACAA
86999329 TATATTATTTCA-
1 TATATTATTT-AT
86999341 TATTATTATTTAT
1 TA-TATTATTTAT
86999354 TATATTATTT-T
1 TATATTATTTAT
* *
86999365 TCACA--AATTAT
1 T-ATATTATTTAT
86999376 TATTATTATTT-T
1 TA-TATTATTTAT
*
86999388 ACATTATTATTTAT
1 -TA-TATTATTTAT
86999402 ATATAATTATTATAT
1 -TAT-ATTATT-TAT
86999417 T-T-TTACTTGTAT
1 TATATTA-TT-TAT
86999429 TATA-TATTTAT
1 TATATTATTTAT
86999440 TA-ATTATTTAT
1 TATATTATTTAT
*
86999451 ATATATTATATAT
1 -TATATTATTTAT
86999464 T
1 T
86999465 GTTTTTATAT
Statistics
Matches: 99, Mismatches: 8, Indels: 34
0.70 0.06 0.24
Matches are distributed among these distances:
10 5 0.05
11 20 0.20
12 25 0.25
13 36 0.36
14 10 0.10
15 3 0.03
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.61
Consensus pattern (12 bp):
TATATTATTTAT
Found at i:86999451 original size:17 final size:17
Alignment explanation
Indices: 86999393--86999458 Score: 52
Period size: 17 Copynumber: 4.0 Consensus size: 17
86999383 ATTTTACATT
86999393 ATTATTTATA--TA-TA
1 ATTATTTATATTTATTA
86999407 ATTA-TTATATTT-TTA
1 ATTATTTATATTTATTA
*
86999422 CTTGTATTATATATTTATTA
1 -AT-TATT-TATATTTATTA
*
86999442 ATTATTTATATATATTA
1 ATTATTTATATTTATTA
86999459 TATATTGTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
13 5 0.12
14 4 0.10
15 3 0.07
16 1 0.02
17 12 0.29
18 5 0.12
19 8 0.20
20 3 0.07
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (17 bp):
ATTATTTATATTTATTA
Found at i:86999479 original size:28 final size:28
Alignment explanation
Indices: 86999426--86999479 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
86999416 TTTTTACTTG
*
86999426 TATTATATATTTATTAATTATTTATATA
1 TATTATATATTTATTAATTATATATATA
86999454 TATTATATATTGT-TT--TTATATATATA
1 TATTATATATT-TATTAATTATATATATA
86999480 CACTTTCATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 10 0.42
28 13 0.54
29 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (28 bp):
TATTATATATTTATTAATTATATATATA
Found at i:87011405 original size:206 final size:206
Alignment explanation
Indices: 87011043--87011833 Score: 1142
Period size: 206 Copynumber: 3.8 Consensus size: 206
87011033 TAGGCCGCAG
* * *
87011043 CATAACAGATCTGGCCTTCAGATGCTTGTAT--TGAAGCAGATCCAAGATGGTTTGGCATCCTTG
1 CATAGCAGATCTGACCTTCAGATG-TT-TATGCTGAAGCAGATCCAAGATGATTTGGCATCCTTG
* * * * * *
87011106 TACTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAAT
64 TGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACGTGCTTACGCTAAAGCAAAT
* * *
87011171 CTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGA
129 CTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTTGA
*
87011236 CGGAGGGCAGACA
194 CGGAGAGCAGACA
* * *
87011249 CATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGTAGATCTAAGATGATTTGGCATCCTTGTG
1 CATAGCAGATCTGACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGATTTGGCATCCTTGTG
* *
87011314 CTTATAAGAAACAAATCAAAGACATAGCTGATTTGGCTTTCACGTGCTTACGCTAAAGCAAATCT
66 CTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACGTGCTTACGCTAAAGCAAATCT
* *
87011379 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTAGCGTCTCCATATTTGACA
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTTGACG
87011444 GAGAGCAGACA
196 GAGAGCAGACA
* * * *
87011455 CATAGCAGATCTGGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTAGCATCCTTGTG
1 CATAGCAGATCTGACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGATTTGGCATCCTTGTG
* * * *
87011520 CTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGAAAATCT
66 CTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACGTGCTTACGCTAAAGCAAATCT
* * * *
87011585 AAGATGATTTGGCATCTTTGTATTGTTAGAGAACAAATTGAAGTTTGGCATCTCCATATTTGACG
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTTGACG
*
87011650 GAGAGTAGACA
196 GAGAGCAGACA
* *
87011661 CATAGCAGATCTAACCTTCAGATGATTA-GACTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
1 CATAGCAGATCTGACCTTCAGATGTTTATG-CTGAAGCAGATCCAAGATGATTTGGCATCCTTGT
* **
87011725 GCTTACAAGGAGCAAAT-AGAA-ATCATAGCTGATTTAACTTTCACGTGCTTACGCTAAAGCAAA
65 GCTTACAAGGAACAAATCA-AAGA-CATAGCTGATTTGGCTTTCACGTGCTTACGCTAAAGCAAA
* *
87011788 TCTAAGATGATTTGGCATCTCTGTATTGTCAAAGAATAAATCGAAG
128 TCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
87011834 AAGGCATCTC
Statistics
Matches: 522, Mismatches: 58, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
204 3 0.01
205 3 0.01
206 516 0.99
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (206 bp):
CATAGCAGATCTGACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGATTTGGCATCCTTGTG
CTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACGTGCTTACGCTAAAGCAAATCT
AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTTGACG
GAGAGCAGACA
Found at i:87013629 original size:28 final size:28
Alignment explanation
Indices: 87013589--87013652 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
87013579 TTATTATTTA
* *
87013589 TATATAATTATTATATT-TTTACT-TGTAT
1 TATATATTTATTA-ATTATTTA-TATATAT
87013617 TATATATTTATTAATTATTTATATATAT
1 TATATATTTATTAATTATTTATATATAT
87013645 TATATATT
1 TATATATT
87013653 ATTTTTACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 4 0.12
28 28 0.88
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (28 bp):
TATATATTTATTAATTATTTATATATAT
Found at i:87013635 original size:11 final size:12
Alignment explanation
Indices: 87013580--87013654 Score: 59
Period size: 11 Copynumber: 6.1 Consensus size: 12
87013570 TATTTTACAT
87013580 TATTATTTATATA
1 TATTATTTAT-TA
87013593 TAATTATTATATT-
1 T-ATTATT-TATTA
87013606 T-TTACTTGTATTA
1 TATTA-TT-TATTA
87013619 TA-TATTTATTA
1 TATTATTTATTA
87013630 -ATTATTTATATA
1 TATTATTTAT-TA
*
87013642 TATTATATATTA
1 TATTATTTATTA
87013654 T
1 T
87013655 TTTTACATAT
Statistics
Matches: 52, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
10 1 0.02
11 15 0.29
12 13 0.25
13 13 0.25
14 7 0.13
15 3 0.06
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (12 bp):
TATTATTTATTA
Found at i:87013639 original size:17 final size:17
Alignment explanation
Indices: 87013581--87013646 Score: 52
Period size: 17 Copynumber: 4.0 Consensus size: 17
87013571 ATTTTACATT
87013581 ATTATTTATA--TA-TA
1 ATTATTTATATTTATTA
87013595 ATTA-TTATATTT-TTA
1 ATTATTTATATTTATTA
*
87013610 CTTGTATTATATATTTATTA
1 -AT-TATT-TATATTTATTA
*
87013630 ATTATTTATATATATTA
1 ATTATTTATATTTATTA
87013647 TATATTATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
13 5 0.12
14 4 0.10
15 3 0.07
16 1 0.02
17 12 0.29
18 5 0.12
19 8 0.20
20 3 0.07
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (17 bp):
ATTATTTATATTTATTA
Found at i:87018575 original size:21 final size:21
Alignment explanation
Indices: 87018544--87018626 Score: 85
Period size: 21 Copynumber: 4.0 Consensus size: 21
87018534 TTATCGAATA
*
87018544 ACAGGTCATACTTATCATATT
1 ACAGATCATACTTATCATATT
* * * *
87018565 GCAGATTATACATGTCATATT
1 ACAGATCATACTTATCATATT
*
87018586 ACAAATCATACTTATCATATT
1 ACAGATCATACTTATCATATT
** *
87018607 TTAGATCATACTGATCATAT
1 ACAGATCATACTTATCATAT
87018627 AACATATTAT
Statistics
Matches: 48, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.39
Consensus pattern (21 bp):
ACAGATCATACTTATCATATT
Found at i:87023196 original size:68 final size:63
Alignment explanation
Indices: 87023049--87023196 Score: 165
Period size: 63 Copynumber: 2.3 Consensus size: 63
87023039 CATAGTTTTG
* *
87023049 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCAGTTTATCTCGTA
1 GCTCTCTTGTACACATGGTGAACACATAGTACCACCCATGCGACCTAGCCAGTTTATCTCGTA
* * * *
87023112 GCTCTCTTGT-CTACATGGTGTACACATATTATCACCCATGCGACCTAGCTACA-TCATAATGTC
1 GCTCTCTTGTAC-ACATGGTGAACACATAGTACCACCCATGCGACCTAGC--CAGT--T--TATC
87023175 TCGTA
59 TCGTA
87023180 GCTCTCTTGTACACATG
1 GCTCTCTTGTACACATG
87023197 ATGTGCACTC
Statistics
Matches: 71, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
62 1 0.01
63 42 0.59
64 1 0.01
65 2 0.03
66 1 0.01
68 23 0.32
69 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.32
Consensus pattern (63 bp):
GCTCTCTTGTACACATGGTGAACACATAGTACCACCCATGCGACCTAGCCAGTTTATCTCGTA
Found at i:87025529 original size:16 final size:15
Alignment explanation
Indices: 87025502--87025531 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
87025492 ATTTATTTAG
87025502 CGAAAAAATAATGAC
1 CGAAAAAATAATGAC
87025517 CGAAAATAATAATGA
1 CGAAAA-AATAATGA
87025532 TAATGTCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.60, C:0.10, G:0.13, T:0.17
Consensus pattern (15 bp):
CGAAAAAATAATGAC
Found at i:87036422 original size:49 final size:49
Alignment explanation
Indices: 87036332--87036428 Score: 142
Period size: 49 Copynumber: 2.0 Consensus size: 49
87036322 GGTGGATATC
* ** *
87036332 GCGATACCATTGAAGGGTGGTCTCCAATCTTGGGTTCGTTGGAGGTATA
1 GCGATACCATTGAAGGGTGGTCTCCAATCTAGGACTCGTTGGACGTATA
87036381 GCGATACCATTGAAGGGTGGTCTCCAATCTCAGGACT-GTTGGACGTAT
1 GCGATACCATTGAAGGGTGGTCTCCAATCT-AGGACTCGTTGGACGTAT
87036429 TGTGATTTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
49 40 0.93
50 3 0.07
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.29
Consensus pattern (49 bp):
GCGATACCATTGAAGGGTGGTCTCCAATCTAGGACTCGTTGGACGTATA
Found at i:87046009 original size:28 final size:30
Alignment explanation
Indices: 87045948--87046010 Score: 76
Period size: 28 Copynumber: 2.1 Consensus size: 30
87045938 AGTAAGTTAC
**
87045948 AACATTTAGAGACCAAATAAGAAAAATTTGA
1 AACATTTAGAGA-CAAATAAGAAAAATTCAA
*
87045979 AACATTTAGGGA-AAATAA-AAAAATTCAA
1 AACATTTAGAGACAAATAAGAAAAATTCAA
87046007 AACA
1 AACA
87046011 GGGGTCATAC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 12 0.41
29 6 0.21
31 11 0.38
ACGTcount: A:0.59, C:0.10, G:0.11, T:0.21
Consensus pattern (30 bp):
AACATTTAGAGACAAATAAGAAAAATTCAA
Found at i:87046983 original size:39 final size:38
Alignment explanation
Indices: 87046907--87047111 Score: 261
Period size: 39 Copynumber: 5.3 Consensus size: 38
87046897 TAATGCTTGT
*
87046907 TTGAGCA-ACTTTCAGTAGAATCAGT-GGTTATAGCTCGA
1 TTGAGCATACTTTTAGTAGAATCAGTAGG-TAT-GCTCGA
*
87046945 TTGAGCATACTTTTAGTAGAATCGGTAGGTATGCCTCGA
1 TTGAGCATACTTTTAGTAGAATCAGTAGGTATG-CTCGA
* *
87046984 TTGAGCATACTTTTAGTAGAATTAGTAGGTATGGCTCGT
1 TTGAGCATACTTTTAGTAGAATCAGTAGGTAT-GCTCGA
* *
87047023 TTGAGCATACTTTTAGTAGAATCAGTGGGTATGGCTTGA
1 TTGAGCATACTTTTAGTAGAATCAGTAGGTAT-GCTCGA
* * *
87047062 TTGAGCATACTTTGAATAGAATCAGTAGGTATAGCTTGA
1 TTGAGCATACTTTTAGTAGAATCAGTAGGTAT-GCTCGA
87047101 TTGAGCATACT
1 TTGAGCATACT
87047112 ATCATACATT
Statistics
Matches: 150, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
38 8 0.05
39 139 0.93
40 3 0.02
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.35
Consensus pattern (38 bp):
TTGAGCATACTTTTAGTAGAATCAGTAGGTATGCTCGA
Found at i:87047043 original size:78 final size:78
Alignment explanation
Indices: 87046907--87047111 Score: 288
Period size: 78 Copynumber: 2.6 Consensus size: 78
87046897 TAATGCTTGT
*
87046907 TTGAGCA-ACTTTCAGTAGAATCAGT-GGTTATAGCTCGATTGAGCATACTTTTAGTAGAATCGG
1 TTGAGCATACTTTCAGTAGAATCAGTAGG-TATAGCTCGATTGAGCATACTTTTAGTAGAATCAG
87046970 TAGGTATGCCTCGA
65 TAGGTATGCCTCGA
* * * *
87046984 TTGAGCATACTTTTAGTAGAATTAGTAGGTATGGCTCGTTTGAGCATACTTTTAGTAGAATCAGT
1 TTGAGCATACTTTCAGTAGAATCAGTAGGTATAGCTCGATTGAGCATACTTTTAGTAGAATCAGT
* * *
87047049 GGGTATGGCTTGA
66 AGGTATGCCTCGA
* * *
87047062 TTGAGCATACTTTGAATAGAATCAGTAGGTATAGCTTGATTGAGCATACT
1 TTGAGCATACTTTCAGTAGAATCAGTAGGTATAGCTCGATTGAGCATACT
87047112 ATCATACATT
Statistics
Matches: 112, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
77 7 0.06
78 103 0.92
79 2 0.02
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.35
Consensus pattern (78 bp):
TTGAGCATACTTTCAGTAGAATCAGTAGGTATAGCTCGATTGAGCATACTTTTAGTAGAATCAGT
AGGTATGCCTCGA
Found at i:87052550 original size:34 final size:32
Alignment explanation
Indices: 87052472--87052560 Score: 90
Period size: 34 Copynumber: 2.7 Consensus size: 32
87052462 TATGGGCCAT
* **
87052472 ACTGTTATCTGAAAAGGGGCTGAGGCCCAGTTT
1 ACTGTTATCTGAAAA-GGGCTTAGGCCCAGTCC
*
87052505 ACTG-TATTCTGAAAAGGGCTTCGGCCCAGTACCC
1 ACTGTTA-TCTGAAAAGGGCTTAGGCCCAGT--CC
*
87052539 ACTGTTATCTGAATAGGGCTTA
1 ACTGTTATCTGAAAAGGGCTTA
87052561 AGCCTAATGA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
32 15 0.33
33 12 0.26
34 17 0.37
35 2 0.04
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (32 bp):
ACTGTTATCTGAAAAGGGCTTAGGCCCAGTCC
Found at i:87054173 original size:15 final size:15
Alignment explanation
Indices: 87054149--87054179 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
87054139 TTAAAAAAGA
*
87054149 AACATGTTATAATAT
1 AACATATTATAATAT
87054164 AACATATTATAATAT
1 AACATATTATAATAT
87054179 A
1 A
87054180 GTTAAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (15 bp):
AACATATTATAATAT
Found at i:87056548 original size:18 final size:19
Alignment explanation
Indices: 87056508--87056551 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
87056498 TGCATGGCAA
* * *
87056508 TATAAATTCGTTAGATATT
1 TATAAATTCATTAAATATG
87056527 TATAAATT-ATTAAATATG
1 TATAAATTCATTAAATATG
87056545 TATAAAT
1 TATAAAT
87056552 AAGTTGAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (19 bp):
TATAAATTCATTAAATATG
Found at i:87057953 original size:14 final size:14
Alignment explanation
Indices: 87057933--87057972 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
87057923 TATTTAATTT
87057933 TTAATTATATTAGGA
1 TTAATTAT-TTAGGA
*
87057948 -TAATTATTAAGGA
1 TTAATTATTTAGGA
87057961 TTAATTATTTAG
1 TTAATTATTTAG
87057973 ATTTTATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.47
Consensus pattern (14 bp):
TTAATTATTTAGGA
Found at i:87058002 original size:10 final size:10
Alignment explanation
Indices: 87057987--87058035 Score: 73
Period size: 10 Copynumber: 4.9 Consensus size: 10
87057977 TATTTTAGCT
87057987 TTTATCTTTA
1 TTTATCTTTA
87057997 TTTATCTTTA
1 TTTATCTTTA
*
87058007 ATTATCTTTA
1 TTTATCTTTA
87058017 TTTAT-TTGTA
1 TTTATCTT-TA
87058027 TTTATCTTT
1 TTTATCTTT
87058036 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.69
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:87059575 original size:43 final size:42
Alignment explanation
Indices: 87059519--87059644 Score: 137
Period size: 43 Copynumber: 2.9 Consensus size: 42
87059509 CCTACATGTT
* *
87059519 ATCACATATCGATGCCAATGTCCCAAACATGGTCTTACACGAA
1 ATCA-ATAACGATGCCAATGTCCCAGACATGGTCTTACACGAA
* * *
87059562 ATCATATAACGATGTCAATGTCCCAGACATGGTTTTACACGTA
1 ATCA-ATAACGATGCCAATGTCCCAGACATGGTCTTACACGAA
* * *
87059605 ATCGCAAT-ATGATGCCGATGTCCTAGACATGGTCTTACAC
1 AT--CAATAACGATGCCAATGTCCCAGACATGGTCTTACAC
87059645 ATAATCACGT
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
43 66 0.94
44 2 0.03
45 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (42 bp):
ATCAATAACGATGCCAATGTCCCAGACATGGTCTTACACGAA
Found at i:87062799 original size:41 final size:41
Alignment explanation
Indices: 87062742--87062823 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
87062732 CAGACCCAGT
*
87062742 TGTATTTTTTCCAGAAAATCTACCTTAAAAGAGGAGTTGAA
1 TGTATTTTTACCAGAAAATCTACCTTAAAAGAGGAGTTGAA
*
87062783 TGTATTTTTACTAGAAAATCTACCTTAAAAGAGGAGTTGAA
1 TGTATTTTTACCAGAAAATCTACCTTAAAAGAGGAGTTGAA
87062824 AAAGCATGGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (41 bp):
TGTATTTTTACCAGAAAATCTACCTTAAAAGAGGAGTTGAA
Found at i:87067475 original size:27 final size:27
Alignment explanation
Indices: 87067435--87067521 Score: 117
Period size: 27 Copynumber: 3.2 Consensus size: 27
87067425 AGGAAGCGAC
*
87067435 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
87067462 CTGGTGGCTCTGCCAC-ATATATCT-ATT
1 CTGGTGGCTCTGCCACAAT-TATCTGA-T
87067489 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
87067516 CTGGTG
1 CTGGTG
87067522 ACTTCGTCAT
Statistics
Matches: 54, Mismatches: 1, Indels: 10
0.83 0.02 0.15
Matches are distributed among these distances:
26 8 0.15
27 44 0.81
28 2 0.04
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:87075392 original size:27 final size:27
Alignment explanation
Indices: 87075350--87075409 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
87075340 AGGAAGCGAC
*
87075350 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTATACCACAA-TATCTGTAT
*
87075377 CTGGTGGCTTTACCACAATATCTGTAT
1 CTGGTGGCTATACCACAATATCTGTAT
87075404 CTGGTG
1 CTGGTG
87075410 ACTTCGTCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 6 0.20
27 24 0.80
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTATACCACAATATCTGTAT
Found at i:87075420 original size:27 final size:26
Alignment explanation
Indices: 87075362--87075427 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
87075352 GGTGGCTATG
* *
87075362 CCACAATTATCTGATCTGGTGGCTTTA
1 CCACAA-TATCTGATCTGGTGACTTCA
*
87075389 CCACAATATCTGTATCTGGTGACTTCG
1 CCACAATATCTG-ATCTGGTGACTTCA
*
87075416 TCACAATATCTG
1 CCACAATATCTG
87075428 GCAGCCTCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (26 bp):
CCACAATATCTGATCTGGTGACTTCA
Found at i:87077961 original size:57 final size:57
Alignment explanation
Indices: 87077831--87077978 Score: 181
Period size: 57 Copynumber: 2.6 Consensus size: 57
87077821 ATTGACCTCA
* * *
87077831 TTATAGAAAGGATTTAGCCTGGATGGGTAATCCTGATATAAGCCCTCTCGAGCATATG
1 TTATA-AAAGGATTTAGCCTGGACGGGTAATCCAGATATAAGCCCTCTAGAGCATATG
* * * * *
87077889 TTATAAATTGAATTTAGCCTAGACGGGTAATCCAGAT-TAAGCTCTTTAGAGCATATG
1 TTATAAA-AGGATTTAGCCTGGACGGGTAATCCAGATATAAGCCCTCTAGAGCATATG
*
87077946 TTACTAAAAGGATTTAGCCTGGACTGGTAATCC
1 TTA-TAAAAGGATTTAGCCTGGACGGGTAATCC
87077979 TGTTATATGA
Statistics
Matches: 76, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
57 43 0.57
58 33 0.43
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (57 bp):
TTATAAAAGGATTTAGCCTGGACGGGTAATCCAGATATAAGCCCTCTAGAGCATATG
Found at i:87080154 original size:167 final size:167
Alignment explanation
Indices: 87079874--87080196 Score: 463
Period size: 167 Copynumber: 1.9 Consensus size: 167
87079864 GAATGCGAAA
*
87079874 ATGATTGTGTATTTATGATTTGGTATATTTATGTTAATCCGTAGCTAACGTCGACCTGGATTCCT
1 ATGATTGTGTATTTATGATTTGGTATATTTATGTTAATCCGTAGCTAACGTCGACATGGATTCCT
* * * * * * * *
87079939 CCAAATGGAAAGGAAAATATATAATTATCGACAAATAGCTCTGAGTTTATGGTTTGTATTTCTAT
66 CAAAATGGAAAGGAAAAGATATAATCATCAACAAATAGCTCGGAGTTTACGATTTGCATTTCTAT
*
87080004 AACCTT-AACATTTTCATTTGTTGCATGGTAATAACAT
131 AA-CTTGAACATTTTCATTTGCTGCATGGTAATAACAT
* * * *
87080041 ATGATTGTGCT-TTTATGATTTTGTATATTTATGTTAATCTGTAGCTAATGTCGATATGGATTCC
1 ATGATTGTG-TATTTATGATTTGGTATATTTATGTTAATCCGTAGCTAACGTCGACATGGATTCC
87080105 TCAAAATGGAAAGGAAAAGATA-AAGTCATCAACAAATAGCTCGGAGTTTACGATTTGCATTTCT
65 TCAAAATGGAAAGGAAAAGATATAA-TCATCAACAAATAGCTCGGAGTTTACGATTTGCATTTCT
*
87080169 ATAACTTGAACCTTTTCATTTGCTGCAT
129 ATAACTTGAACATTTTCATTTGCTGCAT
87080197 TACGAATTGC
Statistics
Matches: 138, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
166 5 0.04
167 132 0.96
168 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (167 bp):
ATGATTGTGTATTTATGATTTGGTATATTTATGTTAATCCGTAGCTAACGTCGACATGGATTCCT
CAAAATGGAAAGGAAAAGATATAATCATCAACAAATAGCTCGGAGTTTACGATTTGCATTTCTAT
AACTTGAACATTTTCATTTGCTGCATGGTAATAACAT
Found at i:87086974 original size:20 final size:20
Alignment explanation
Indices: 87086949--87086986 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
87086939 GACTAAACCG
87086949 AAAACTTTAG-AAATTTTTAC
1 AAAAC-TTAGAAAATTTTTAC
87086969 AAAACTTAGAAAATTTTT
1 AAAACTTAGAAAATTTTT
87086987 GCCCTAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.39
Consensus pattern (20 bp):
AAAACTTAGAAAATTTTTAC
Found at i:87097070 original size:20 final size:20
Alignment explanation
Indices: 87097045--87097084 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
87097035 CACCTCCATT
87097045 TGCATCGTACTGCATTACTA
1 TGCATCGTACTGCATTACTA
87097065 TGCATCGTACTGCATTACTA
1 TGCATCGTACTGCATTACTA
87097085 GATGAGCCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (20 bp):
TGCATCGTACTGCATTACTA
Found at i:87099374 original size:13 final size:13
Alignment explanation
Indices: 87099358--87099385 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
87099348 AGTATAAAAC
87099358 ATGAAATTAAAGG
1 ATGAAATTAAAGG
87099371 ATGAAATTAAAGG
1 ATGAAATTAAAGG
87099384 AT
1 AT
87099386 TAGGAGCATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.21, T:0.25
Consensus pattern (13 bp):
ATGAAATTAAAGG
Found at i:87104089 original size:27 final size:27
Alignment explanation
Indices: 87104059--87104507 Score: 452
Period size: 27 Copynumber: 16.6 Consensus size: 27
87104049 TTAGTTTACC
87104059 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
87104086 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
87104113 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
87104140 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
87104167 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * ** **
87104194 AAATTACTAAAATACCCTTATTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * * *
87104221 AAATTACAAAAAAAACCCTAGTTGGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
87104248 AAATCACAAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
87104275 AAACCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
87104302 AAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
87104329 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
87104356 AAATTACCAAAATACCCCAAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
87104383 AAATTATCAAAATACCACTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
87104410 AAATTACCAAAATACTCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** ***
87104437 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*** * *
87104464 AAATTATTGAAATA-TCCTCGGCTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
87104491 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
87104508 TTGATTTACA
Statistics
Matches: 350, Mismatches: 70, Indels: 3
0.83 0.17 0.01
Matches are distributed among these distances:
26 3 0.01
27 346 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:87104441 original size:108 final size:108
Alignment explanation
Indices: 87104059--87104507 Score: 519
Period size: 108 Copynumber: 4.2 Consensus size: 108
87104049 TTAGTTTACC
* *
87104059 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAA
* *
87104124 ATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
66 ATACCCTTAGTTTGTAAAATTACAAAAATACCCTTGGTTTATA
* * *
87104167 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTT-ATTTTACAAAATTACAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGA-TTTATAAAATTAC-CA
* * *
87104231 AAAAACCC-TAGTTGGTAAAATCACAAAAATACCCTTGGTTTATA
64 AAATACCCTTAGTTTGTAAAATTACAAAAATACCCTTGGTTTATA
** *
87104275 AAACCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAA
* *** *
87104340 ATACCCTTAGTTTGTAAAATTACCAAAATACCCCAAGTTTGTA
66 ATACCCTTAGTTTGTAAAATTACAAAAATACCCTTGGTTTATA
* * * * * **
87104383 AAATTATCAAAATACCACTAGTTTGTAAAATTACCAAAATACTCC-TGATTTGTGAAATTACTGA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATAC-CCTTGATTTATAAAATTACCAA
* ** *** * * * *
87104447 AATACCC-TCGACCTGTAAAATTATTGAAATATCCTCGGCTTGTA
65 AATACCCTTAG-TTTGTAAAATTACAAAAATACCCTTGGTTTATA
87104491 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
87104508 TTGATTTACA
Statistics
Matches: 291, Mismatches: 44, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
107 10 0.03
108 271 0.93
109 10 0.03
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (108 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAA
ATACCCTTAGTTTGTAAAATTACAAAAATACCCTTGGTTTATA
Found at i:87104452 original size:54 final size:54
Alignment explanation
Indices: 87104059--87104424 Score: 516
Period size: 54 Copynumber: 6.8 Consensus size: 54
87104049 TTAGTTTACC
* *
87104059 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
87104113 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * ** *
87104167 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTATTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * * *
87104221 AAATTACAAAAAAAACCCTAGTTGGTAAAATCACAAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
** *
87104275 AAACCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *** *
87104329 AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCAAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
87104383 AAATTATCAAAATACCACTAGTTTGTAAAATTACCAAAATAC
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATAC
87104425 TCCTGATTTG
Statistics
Matches: 275, Mismatches: 37, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 275 1.00
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.30
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:87104522 original size:27 final size:27
Alignment explanation
Indices: 87104053--87104560 Score: 217
Period size: 27 Copynumber: 18.8 Consensus size: 27
87104043 AATACTTTAG
* *
87104053 TTTACCAAATTACCAAAATACCC-CTGG
1 TTTACAAAATTACCAAAATACCCTC-GA
** * *
87104080 TTTGTAAAATTACCAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
*
87104107 TTTACAAAATTACCAAAATACCC-CTA
1 TTTACAAAATTACCAAAATACCCTCGA
** * * *
87104133 GTTTGTAAAATTACTAAAATACCCTTGG
1 -TTTACAAAATTACCAAAATACCCTCGA
* *
87104161 TTTATAAAATTACCAAAATACCC-CTGG
1 TTTACAAAATTACCAAAATACCCTC-GA
** * *
87104188 TTTGTAAAATTACTAAAATACCCT-TA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *
87104214 TTTTACAAAATTACAAAAAAAACCCTAG-
1 -TTTACAAAATTAC-CAAAATACCCTCGA
*** * * * *
87104242 TTGGTAAAATCACAAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
* ** *
87104269 TTTATAAAACCACCAAAATACCC-CTGG
1 TTTACAAAATTACCAAAATACCCTC-GA
** * *
87104296 TTTGTAAAATTACCAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
* *
87104323 TTTATAAAATTACCAAAATACCCT-TA
1 TTTACAAAATTACCAAAATACCCTCGA
** *
87104349 GTTTGTAAAATTACCAAAATACCC-CAA
1 -TTTACAAAATTACCAAAATACCCTCGA
** * *
87104376 GTTTGTAAAATTATCAAAATACCACTAG-
1 -TTTACAAAATTACCAAAATACC-CTCGA
**
87104404 TTTGTAAAATTACCAAAATACTCCT-GA
1 TTTACAAAATTACCAAAATAC-CCTCGA
*** **
87104431 TTTGTGAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
** ** *** * *
87104458 CCTGTAAAATTATTGAAATATCCTCGG
1 TTTACAAAATTACCAAAATACCCTCGA
* ** *
87104485 CTTGTAAAATTACCAAAATACCCTTGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ***
87104512 TTTACAGAATTACCATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* *
87104539 TTTACAAAATTATCGAAATACC
1 TTTACAAAATTACCAAAATACC
87104561 TTTGTAGGGT
Statistics
Matches: 382, Mismatches: 81, Indels: 36
0.77 0.16 0.07
Matches are distributed among these distances:
26 15 0.04
27 356 0.93
28 11 0.03
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:87104841 original size:27 final size:27
Alignment explanation
Indices: 87104552--87104833 Score: 368
Period size: 27 Copynumber: 10.4 Consensus size: 27
87104542 ACAAAATTAT
* *
87104552 CGAAATACCTTTGTAGGGTAGAAATGC
1 CGAAATACCCTTGTAGGGTAGAAATAC
*
87104579 CGAAATACCCTTGTAGGGTAGAGATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
* *
87104606 TGAAATACCCTTGTAGGGTAGAAATGC
1 CGAAATACCCTTGTAGGGTAGAAATAC
87104633 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
*
87104660 CGAAATACCCCTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
* * *
87104687 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
** * *
87104714 TAAAATACCCTTGTAGGGTAGAATTAT
1 CGAAATACCCTTGTAGGGTAGAAATAC
87104741 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
* * *
87104768 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
* * *
87104795 TGAAATACTCC-TGTAAGGTAGAATTAC
1 CGAAATAC-CCTTGTAGGGTAGAAATAC
*
87104822 CGAGATACCCTT
1 CGAAATACCCTT
87104834 ATGGGGTAAA
Statistics
Matches: 227, Mismatches: 26, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 2 0.01
27 223 0.98
28 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
CGAAATACCCTTGTAGGGTAGAAATAC
Found at i:87105138 original size:27 final size:27
Alignment explanation
Indices: 87105093--87105145 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
87105083 CCTCGCTACA
*
87105093 ATCTGGTGGCCTCGCCACAATATCTGT
1 ATCTGGTGACCTCGCCACAATATCTGT
* *
87105120 ATCTGGTGACTTCGTCACAATATCTG
1 ATCTGGTGACCTCGCCACAATATCTG
87105146 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (27 bp):
ATCTGGTGACCTCGCCACAATATCTGT
Found at i:87105273 original size:6 final size:6
Alignment explanation
Indices: 87105264--87105456 Score: 130
Period size: 6 Copynumber: 31.3 Consensus size: 6
87105254 TTGCATTCAT
* * *
87105264 ATTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
*
87105314 ATTCTG ATTCT- AGTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG A-TTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
87105363 ATTCT- ATTACCTA ATTCTG ATTCTG ATTCTG ATTTTG ATTCTG -TCACCTA
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
87105413 ATTTTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
87105457 AATGTTTCTT
Statistics
Matches: 147, Mismatches: 21, Indels: 38
0.71 0.10 0.18
Matches are distributed among these distances:
5 12 0.08
6 113 0.77
7 14 0.10
8 8 0.05
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:87105295 original size:25 final size:25
Alignment explanation
Indices: 87105267--87105331 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
87105257 CATTCATATT
*
87105267 CTGATTCTAATTCTGTTACCTGATA
1 CTGATTCTAATTCTGTTACCTAATA
* *
87105292 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTAATTCTGTTACCTAATA
*
87105317 CTGATTCTAGTTCTG
1 CTGATTCTAATTCTG
87105332 ATTCTGATTC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (25 bp):
CTGATTCTAATTCTGTTACCTAATA
Found at i:87105298 original size:19 final size:19
Alignment explanation
Indices: 87105292--87105424 Score: 103
Period size: 19 Copynumber: 6.8 Consensus size: 19
87105282 TTACCTGATA
87105292 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
87105311 CTAATTCTGATTCTAGTT--
1 CTGATTCTGATTCT-GTTAC
87105329 CTGATTCTGATTCTGTTACC
1 CTGATTCTGATTCTGTTA-C
*
87105349 TGATACTGATTCTGATTCTATTAC
1 -----CTGATTCTGATTCTGTTAC
*
87105373 CTAATTCTGATTCTGATT--
1 CTGATTCTGATTCTG-TTAC
* *
87105391 CTGATTTTGATTCTGTCAC
1 CTGATTCTGATTCTGTTAC
* *
87105410 CTAATTTTGATTCTG
1 CTGATTCTGATTCTG
87105425 ATTCTGATTC
Statistics
Matches: 93, Mismatches: 9, Indels: 24
0.74 0.07 0.19
Matches are distributed among these distances:
17 4 0.04
18 26 0.28
19 40 0.43
20 5 0.05
24 1 0.01
25 17 0.18
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.48
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:87105359 original size:25 final size:25
Alignment explanation
Indices: 87105329--87105393 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
87105319 GATTCTAGTT
*
87105329 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
* *
87105354 CTGATTCTGATTCTATTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
87105379 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
87105394 ATTTTGATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:87105362 original size:62 final size:62
Alignment explanation
Indices: 87105265--87105456 Score: 264
Period size: 62 Copynumber: 3.1 Consensus size: 62
87105255 TGCATTCATA
*
87105265 TTCTGATTCTAATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTAG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTAG
*
87105327 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCT-G
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTAG
* * * ** * *
87105388 ATTCTGATTTTGATTCTGTCACCTAATTTTGATTCTGATTCTGATT--CTCATTTTGATTCTAG
1 -TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG-TTACCTAATTCTGATTCTAG
87105450 TTCTGAT
1 TTCTGAT
87105457 AATGTTTCTT
Statistics
Matches: 117, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
61 20 0.17
62 95 0.81
63 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (62 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTAG
Found at i:87105389 original size:37 final size:37
Alignment explanation
Indices: 87105348--87105435 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 37
87105338 ATTCTGTTAC
* *
87105348 CTGATACTGATTCTGATTCTATTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
* * *
87105385 CTGATTCTGATTTTGATTCTGTCACCTAATTTTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
87105422 CTGATTCTGATTCT
1 CTGATTCTGATTCT
87105436 CATTTTGATT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
Found at i:87111426 original size:27 final size:26
Alignment explanation
Indices: 87111378--87111429 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
87111368 ACGAGGCTGC
*
87111378 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
87111404 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
87111430 TTGCAGTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:87129628 original size:23 final size:23
Alignment explanation
Indices: 87129597--87129643 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
87129587 TTCAACTGCT
* *
87129597 CCCCCTCTCCTTCATAGATAATG
1 CCCCATCTCCTTAATAGATAATG
87129620 CCCCATCTCCTTAATAGATAATG
1 CCCCATCTCCTTAATAGATAATG
87129643 C
1 C
87129644 TTTCTTTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.26, C:0.36, G:0.09, T:0.30
Consensus pattern (23 bp):
CCCCATCTCCTTAATAGATAATG
Found at i:87132921 original size:53 final size:53
Alignment explanation
Indices: 87132746--87132952 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 53
87132736 ATTAGGGTTT
* * * * *
87132746 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * * *
87132800 AAGGAAATCATGTAAGACCATGTCAAGACATAGCATTGATAAACTACGATAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
87132855 AAAGAT-CCTACGTAAAACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACC-ACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
87132908 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
87132953 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 30, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
53 43 0.36
54 40 0.34
55 36 0.30
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:87146324 original size:12 final size:12
Alignment explanation
Indices: 87146307--87146340 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
87146297 CGACCCGCCC
87146307 ATATTAATTTTT
1 ATATTAATTTTT
*
87146319 ATATTACTTTTT
1 ATATTAATTTTT
87146331 ATA-TAATTTT
1 ATATTAATTTT
87146341 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:87146508 original size:30 final size:30
Alignment explanation
Indices: 87146465--87146522 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
87146455 TTTAACAAGC
*
87146465 AAATGCCTCTAAAATAATAATAAAATTAGA
1 AAATGCCTCTAAAATAATAAAAAAATTAGA
* *
87146495 AAATGTCTTTAAAATAATAAAAAAATTA
1 AAATGCCTCTAAAATAATAAAAAAATTA
87146523 ACAATAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.59, C:0.07, G:0.05, T:0.29
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAAAAAAATTAGA
Found at i:87150258 original size:20 final size:20
Alignment explanation
Indices: 87150233--87150272 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
87150223 TTCTATGGTT
87150233 TCTAATATTAAGATCACTAA
1 TCTAATATTAAGATCACTAA
87150253 TCTAATATTAAGATCACTAA
1 TCTAATATTAAGATCACTAA
87150273 CATTTGCAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (20 bp):
TCTAATATTAAGATCACTAA
Found at i:87157674 original size:7 final size:7
Alignment explanation
Indices: 87157662--87157691 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
87157652 TCATTTTATA
87157662 TATTTTT
1 TATTTTT
87157669 TATTTTT
1 TATTTTT
87157676 TATTTATT
1 TATTT-TT
87157684 TATTTTT
1 TATTTTT
87157691 T
1 T
87157692 CAAACGTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (7 bp):
TATTTTT
Found at i:87157687 original size:15 final size:14
Alignment explanation
Indices: 87157662--87157691 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
87157652 TCATTTTATA
87157662 TATTTTTTATTTTT
1 TATTTTTTATTTTT
87157676 TATTTATTTATTTTT
1 TATTT-TTTATTTTT
87157691 T
1 T
87157692 CAAACGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (14 bp):
TATTTTTTATTTTT
Found at i:87158025 original size:19 final size:19
Alignment explanation
Indices: 87157959--87158025 Score: 57
Period size: 23 Copynumber: 3.4 Consensus size: 19
87157949 TAATAATTTA
*
87157959 AATTAAAAATATTAATTTATAT
1 AATTAAAAATATTAA--T-TAC
87157981 AATTTAAAAATATTAATTAC
1 AA-TTAAAAATATTAATTAC
*
87158001 TA-TAAAAATTATTAA-TAC
1 AATTAAAAA-TATTAATTAC
87158019 AATTAAA
1 AATTAAA
87158026 CTTTTTTTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
18 10 0.26
19 10 0.26
20 3 0.08
21 1 0.03
22 2 0.05
23 13 0.33
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (19 bp):
AATTAAAAATATTAATTAC
Found at i:87160883 original size:23 final size:23
Alignment explanation
Indices: 87160853--87160896 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
87160843 ACATATCAGA
*
87160853 TAACACAAAACACAGAAGTGCTG
1 TAACACAAAACACAAAAGTGCTG
*
87160876 TAACACAAAGCACAAAAGTGC
1 TAACACAAAACACAAAAGTGC
87160897 AATATCATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.50, C:0.23, G:0.16, T:0.11
Consensus pattern (23 bp):
TAACACAAAACACAAAAGTGCTG
Found at i:87163616 original size:12 final size:12
Alignment explanation
Indices: 87163601--87163625 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
87163591 TTAAATTAAC
87163601 CACACGGCCTAG
1 CACACGGCCTAG
87163613 CACACGGCCTAG
1 CACACGGCCTAG
87163625 C
1 C
87163626 GCACTAGCGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.44, G:0.24, T:0.08
Consensus pattern (12 bp):
CACACGGCCTAG
Found at i:87167917 original size:5 final size:5
Alignment explanation
Indices: 87167873--87167903 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
87167863 ATATTATTTA
87167873 TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT T
1 TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT T
87167904 AGATAAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TTAAT
Found at i:87188202 original size:42 final size:41
Alignment explanation
Indices: 87188097--87188245 Score: 190
Period size: 41 Copynumber: 3.6 Consensus size: 41
87188087 ATTAATTATA
* * *
87188097 CCCTGAACTGCACATGCGTGCCCCTGTTTGTACTTCGGTAC
1 CCCTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
* * * * *
87188138 CCCTAAATTGCACATGCATGCCCCTATTTGTAATTCGATAC
1 CCCTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
*
87188179 CCTCTGAATTGCACATACGTGCCCCTATTTGTACTTTGGTAC
1 CC-CTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
* *
87188221 CCCTGAATAGCACATACGTACCCCT
1 CCCTGAATTGCACATACGTGCCCCT
87188246 TTTTACACTC
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
41 58 0.62
42 35 0.38
ACGTcount: A:0.21, C:0.32, G:0.16, T:0.30
Consensus pattern (41 bp):
CCCTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
Found at i:87195504 original size:49 final size:49
Alignment explanation
Indices: 87195426--87195556 Score: 138
Period size: 49 Copynumber: 2.7 Consensus size: 49
87195416 GGTTAAGATG
* * * *
87195426 CCGACGCCATGTCCTAAACATGGTCTTATACTGGCTTTCATATAGCGAG-A
1 CCGATGCCATGTCCCAGACA-GGTCTTATACTGGCTCTCATATAGCG-GTA
* * * * *
87195476 CCGATGCCATGTCCCAGATAGGTCTTATACTAGCTCTCATTTATCGGTG
1 CCGATGCCATGTCCCAGACAGGTCTTATACTGGCTCTCATATAGCGGTA
* *
87195525 TCGATGCCATGTCCCAGACAGGTCTTACACTG
1 CCGATGCCATGTCCCAGACAGGTCTTATACTG
87195557 ACACACTAGA
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
48 1 0.01
49 50 0.75
50 16 0.24
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACAGGTCTTATACTGGCTCTCATATAGCGGTA
Found at i:87195659 original size:48 final size:48
Alignment explanation
Indices: 87195433--87195790 Score: 203
Period size: 46 Copynumber: 7.6 Consensus size: 48
87195423 ATGCCGACGC
* * * * * **
87195433 CATGTCCTAAACATGGTCTTATACTGGCT-TTCATATAGCGAGACCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTACATAT-GCGAGGTCGATG
* * *
87195482 CCATGTCCCAGATAGGTCTTATACTAGCTCT-CATTTAT-CG-GTGTCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTACA--TATGCGAG-GTCGATG
* * * * *
87195531 CCATGTCCCAGACAGGTCTTACACT-G-AC-ACACTA-G-AAGCT-GACG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTACA-TATGCGAGGTCGATG
* * * *
87195575 CCATGCCCCAGACAGGTTTTACACTAGC-CTATATATCGCGAGGTCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTACATAT-GCGAGGTCGATG
* * *
87195624 CATGTCCTAGACATGTCTTACACTAGCTCT-CATAT-CAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATATGCGAGGTCGATG
* * * *
87195670 CATGTCCCAAACATGTCTTACACTGGCT-TAAATATCTCGAGGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATAT-GCGAGGTCGATG
* * * *
87195718 CATGTCCTAGACATGTCTTACACTGGCTCT-C--ATGCTGTGG-CTAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATATGC-GAGGTC-GATG
87195764 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
87195791 AGACAATCAC
Statistics
Matches: 246, Mismatches: 41, Indels: 46
0.74 0.12 0.14
Matches are distributed among these distances:
44 26 0.11
45 8 0.03
46 76 0.31
47 4 0.02
48 67 0.27
49 51 0.21
50 11 0.04
51 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTACATATGCGAGGTCGATG
Done.