Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 274 of 325
Found at i:89631532 original size:40 final size:40
Alignment explanation
Indices: 89631488--89631675 Score: 308
Period size: 40 Copynumber: 4.7 Consensus size: 40
89631478 GCTACTAGCT
89631488 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
89631528 CAAATGCCTTCTGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
89631568 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
89631608 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
89631647 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
89631676 CAATCCGAAT
Statistics
Matches: 138, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.25
40 102 0.74
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:89638920 original size:93 final size:93
Alignment explanation
Indices: 89638808--89638978 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
89638798 GCCCATAAGT
* *
89638808 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
89638873 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
89638901 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
89638966 CGAGTTCGGATGC
66 CGAGCTCGGATGC
89638979 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:89638975 original size:46 final size:46
Alignment explanation
Indices: 89638800--89638975 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
89638790 TGTAACCCGC
* *
89638800 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
89638846 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
89638892 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
89638939 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
89638976 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:89642297 original size:40 final size:40
Alignment explanation
Indices: 89642253--89642440 Score: 308
Period size: 40 Copynumber: 4.7 Consensus size: 40
89642243 GCTACTAGCT
89642253 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
89642293 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
89642333 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
89642373 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
89642412 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
89642441 CAATCTGAAA
Statistics
Matches: 138, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.25
40 102 0.74
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:89647342 original size:24 final size:24
Alignment explanation
Indices: 89647315--89647479 Score: 176
Period size: 24 Copynumber: 6.9 Consensus size: 24
89647305 GAAATAACTT
89647315 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
*
89647339 TGGCACTATGTGTGCAGG-TTTGTA
1 TGGCACTATGTGTGC-GGATTTGAA
* *
89647363 TGGCACTATGTGTGCAGATTTGTA
1 TGGCACTATGTGTGCGGATTTGAA
89647387 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* * *
89647411 TGTCAATATGTGTGTGGATTACT-AA
1 TGGCACTATGTGTGCGGATT--TGAA
* *
89647436 -GGCACTATGTGTGCGG-GTTAACA
1 TGGCACTATGTGTGCGGATTTGA-A
* *
89647459 TGGCACTATGGGTGCGAATTT
1 TGGCACTATGTGTGCGGATTT
89647480 CCTTGCTTGA
Statistics
Matches: 119, Mismatches: 14, Indels: 15
0.80 0.09 0.10
Matches are distributed among these distances:
21 1 0.01
22 1 0.01
23 3 0.03
24 107 0.90
25 6 0.05
26 1 0.01
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGAA
Found at i:89647440 original size:72 final size:72
Alignment explanation
Indices: 89647315--89647449 Score: 200
Period size: 72 Copynumber: 1.9 Consensus size: 72
89647305 GAAATAACTT
* ** *
89647315 TGGCACTATGTGTGCGGATTTGAATGGCACTATGTGTGCAGGTTTGTATGGCACTATGTGTGCAG
1 TGGCACTATGTGTGCGGATTTGAATGGCAATATGTGTGCAGGTTACTAAGGCACTATGTGTGCAG
89647380 ATTTGTA
66 ATTTGTA
* *
89647387 TGGCACTATGTGTGCGGATTTGAATGTCAATATGTGTG-TGGATTACTAAGGCACTATGTGTGC
1 TGGCACTATGTGTGCGGATTTGAATGGCAATATGTGTGCAGG-TTACTAAGGCACTATGTGTGC
89647450 GGGTTAACAT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
71 2 0.04
72 54 0.96
ACGTcount: A:0.21, C:0.13, G:0.31, T:0.36
Consensus pattern (72 bp):
TGGCACTATGTGTGCGGATTTGAATGGCAATATGTGTGCAGGTTACTAAGGCACTATGTGTGCAG
ATTTGTA
Found at i:89647462 original size:72 final size:72
Alignment explanation
Indices: 89647315--89647479 Score: 197
Period size: 72 Copynumber: 2.3 Consensus size: 72
89647305 GAAATAACTT
* ** *
89647315 TGGCACTATGTGTGCGGATTTGAATGGCACTATGTGTGCAGGTTTGTATGGCACTATGTGTGCAG
1 TGGCACTATGTGTGCGGATTTGAATGGCAATATGTGTGCAGGTTACTAAGGCACTATGTGTGCAG
***
89647380 ATTTGTA
66 ATTAACA
* * *
89647387 TGGCACTATGTGTGCGGATTTGAATGTCAATATGTGTG-TGGATTACTAAGGCACTATGTGTGCG
1 TGGCACTATGTGTGCGGATTTGAATGGCAATATGTGTGCAGG-TTACTAAGGCACTATGTGTGCA
*
89647451 GGTTAACA
65 GATTAACA
* *
89647459 TGGCACTATGGGTGCGAATTT
1 TGGCACTATGTGTGCGGATTT
89647480 CCTTGCTTGA
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
71 2 0.03
72 77 0.97
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.35
Consensus pattern (72 bp):
TGGCACTATGTGTGCGGATTTGAATGGCAATATGTGTGCAGGTTACTAAGGCACTATGTGTGCAG
ATTAACA
Found at i:89654757 original size:13 final size:13
Alignment explanation
Indices: 89654739--89654769 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
89654729 TTTTTTGACC
89654739 GAAAGAAACAAAA
1 GAAAGAAACAAAA
*
89654752 GAAAGAAAGAAAA
1 GAAAGAAACAAAA
89654765 GAAAG
1 GAAAG
89654770 CTTTAGGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.74, C:0.03, G:0.23, T:0.00
Consensus pattern (13 bp):
GAAAGAAACAAAA
Found at i:89655682 original size:43 final size:42
Alignment explanation
Indices: 89655588--89655747 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
89655578 ATATGTGTTC
* * * **
89655588 TCGTGTAAGACCATGTCTAGGACGTTGGCATCGATATACGATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGACATGTGA-T
* * *
89655631 TCGAGTAAGACCATGTTTGGGATATTGGCATCGTA-ATTGTGAT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCG-ACA-TGTGAT
* * * *
89655674 TCGTGTAAGACCCTATCCGGGACAGTGGCATCGACATGTGAT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGACATGTGAT
* *
89655716 TACATGTAAGACCACGTCTGGGACATTGGCAT
1 T-CGTGTAAGACCATGTCTGGGACATTGGCAT
89655748 TGTACGATAT
Statistics
Matches: 93, Mismatches: 20, Indels: 8
0.77 0.17 0.07
Matches are distributed among these distances:
42 8 0.09
43 81 0.87
44 4 0.04
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACATTGGCATCGACATGTGAT
Found at i:89659314 original size:17 final size:17
Alignment explanation
Indices: 89659273--89659315 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
89659263 GTTTCGGCTA
*
89659273 GAAGAAAAAGCAAAAAG
1 GAAGAAAGAGCAAAAAG
89659290 GAAGAAAGAGCAAAAAG
1 GAAGAAAGAGCAAAAAG
89659307 GAAGAAAGA
1 GAAGAAAGA
89659316 AAATGAAGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.67, C:0.05, G:0.28, T:0.00
Consensus pattern (17 bp):
GAAGAAAGAGCAAAAAG
Found at i:89660670 original size:34 final size:35
Alignment explanation
Indices: 89660617--89660684 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 35
89660607 CCTAGCTACA
*
89660617 GTCTCAGTCTTCTAAAGTTTTCAGT-TTTCCCTAAT
1 GTCTCAGTCTTCTAAAG-TTTCAGTATTACCCTAAT
*
89660652 GTCTCAGT-TTCTACAGTTTCAGTATTACCCTAA
1 GTCTCAGTCTTCTAAAGTTTCAGTATTACCCTAA
89660685 CTACAGAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
33 7 0.23
34 15 0.50
35 8 0.27
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.43
Consensus pattern (35 bp):
GTCTCAGTCTTCTAAAGTTTCAGTATTACCCTAAT
Found at i:89669988 original size:12 final size:13
Alignment explanation
Indices: 89669952--89669989 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
89669942 AAATATTTGA
89669952 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
89669965 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
89669979 CTTG-TCTTAAT
1 CTTGTTCTTAAT
89669990 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:89674642 original size:30 final size:30
Alignment explanation
Indices: 89674597--89674656 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
89674587 ATTTAATACG
* *
89674597 AACTTTGGCAAAATTACATTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
89674627 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
89674657 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:89676818 original size:68 final size:64
Alignment explanation
Indices: 89676708--89676858 Score: 162
Period size: 68 Copynumber: 2.3 Consensus size: 64
89676698 ATACAGATAG
* * * * *
89676708 TATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGATACAAGACA
1 TATGTAGCTAGGTCGCATGGATGATACTGAGTGCACACCATGTAG-ACAAGAGAGATAC--GACA
89676772 TTA
63 -TA
* * *
89676775 TGATGTAGCTAGGTCGCATGGATGATACT-ATGTGTACACCATGTAGACAAGAGAGCTACGAGAT
1 T-ATGTAGCTAGGTCGCATGGATGATACTGA-GTGCACACCATGTAGACAAGAGAGATACGACAT
89676839 A
64 A
89676840 TATGTAGCTAGGTCGCATG
1 TATGTAGCTAGGTCGCATG
89676859 TGTGGTTCTA
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
64 18 0.25
65 3 0.04
66 3 0.04
67 2 0.03
68 46 0.63
69 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.26
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGATGATACTGAGTGCACACCATGTAGACAAGAGAGATACGACATA
Found at i:89676960 original size:63 final size:63
Alignment explanation
Indices: 89676781--89676960 Score: 184
Period size: 67 Copynumber: 2.8 Consensus size: 63
89676771 ATTATGATGT
* * * *
89676781 AGCTAGGTCGCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATATATG
1 AGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAAATG
* * * * * *
89676844 TAGCTAGGTCGCATGTGTGGTTCTACGCGAATGACACCATGTAGACAATAGAGCTACGATATAAA
1 -AGCTAGGTCGCATGGGTGGTACTAAGTG--T-ACACCATGTAGACAAGAGAGCTACGAGATAAA
89676909 CTG
62 -TG
* *
89676912 -GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 AGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
89676961 CGAACTATAT
Statistics
Matches: 95, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.18
64 23 0.24
66 23 0.24
67 29 0.31
68 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (63 bp):
AGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAAATG
Found at i:89682540 original size:13 final size:13
Alignment explanation
Indices: 89682522--89682546 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89682512 GAATCAGTAT
89682522 GTGTGAAAATTTC
1 GTGTGAAAATTTC
89682535 GTGTGAAAATTT
1 GTGTGAAAATTT
89682547 AATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:89683767 original size:43 final size:43
Alignment explanation
Indices: 89683646--89683795 Score: 159
Period size: 43 Copynumber: 3.5 Consensus size: 43
89683636 TGTGTGACCG
* *
89683646 TGTAAGACCACGTCTGGGAC-GTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCATGTCTGGGACAG-T-GCATCGA-TATTTGATTTACA
*
89683690 TGTAAGACCATGTCTGGGACA-TCAGCATCG-TATTTGATTT-CG
1 TGTAAGACCATGTCTGGGACAGT--GCATCGATATTTGATTTACA
*
89683732 TGTAAGACCTTGTCTGGGACAGTGTCATCGATATTTG-TTTACA
1 TGTAAGACCATGTCTGGGACAGTG-CATCGATATTTGATTTACA
*
89683775 TGTAAGACCATGTATGGGACA
1 TGTAAGACCATGTCTGGGACA
89683796 TTGGCATTGT
Statistics
Matches: 91, Mismatches: 8, Indels: 15
0.80 0.07 0.13
Matches are distributed among these distances:
41 1 0.01
42 30 0.33
43 35 0.38
44 25 0.27
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGCATCGATATTTGATTTACA
Found at i:89688846 original size:47 final size:47
Alignment explanation
Indices: 89688794--89689199 Score: 659
Period size: 47 Copynumber: 8.6 Consensus size: 47
89688784 GATAATTGTG
* * *
89688794 ATGTGAATGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
89688841 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
89688890 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
89688937 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
89688984 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
89689033 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
89689080 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
89689127 ATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
89689174 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
89689200 TCCCGAAGGG
Statistics
Matches: 338, Mismatches: 17, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 247 0.73
49 91 0.27
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:89688942 original size:143 final size:143
Alignment explanation
Indices: 89688794--89689199 Score: 690
Period size: 143 Copynumber: 2.9 Consensus size: 143
89688784 GATAATTGTG
* *
89688794 ATGTGAATGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
89688859 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
89688924 GCCGATGTGATGA
131 GCCGATGTGATGA
*
89688937 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
89689002 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
89689067 GCCGATGTGATGA
131 GCCGATGTGATGA
*
89689080 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * *
89689143 ATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
89689200 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
141 55 0.22
143 195 0.78
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
GCCGATGTGATGA
Found at i:89691130 original size:9 final size:9
Alignment explanation
Indices: 89691118--89691151 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
89691108 AACAGGGGAA
89691118 AGAAAGAAG
1 AGAAAGAAG
89691127 AGAAAGAAG
1 AGAAAGAAG
89691136 AGAAAGAA-
1 AGAAAGAAG
89691144 AGAAAGAA
1 AGAAAGAA
89691152 AAAGAAAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 8 0.32
9 17 0.68
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (9 bp):
AGAAAGAAG
Found at i:89691157 original size:18 final size:18
Alignment explanation
Indices: 89691116--89691159 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
89691106 GAAACAGGGG
89691116 AAAGAAAGAAGAGAAAGA
1 AAAGAAAGAAGAGAAAGA
*
89691134 AGAGAAAGAA-AGAAAGAA
1 AAAGAAAGAAGAGAAAG-A
89691152 AAAGAAAG
1 AAAGAAAG
89691160 GAGAAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 6 0.26
18 17 0.74
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (18 bp):
AAAGAAAGAAGAGAAAGA
Found at i:89691159 original size:4 final size:4
Alignment explanation
Indices: 89691115--89691152 Score: 58
Period size: 4 Copynumber: 9.0 Consensus size: 4
89691105 CGAAACAGGG
89691115 GAAA GAAA GAAGA GAAA GAAGA GAAA GAAA GAAA GAAA
1 GAAA GAAA GAA-A GAAA GAA-A GAAA GAAA GAAA GAAA
89691153 AAGAAAGGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 24 0.75
5 8 0.25
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:89691164 original size:13 final size:13
Alignment explanation
Indices: 89691127--89691166 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
89691117 AAGAAAGAAG
*
89691127 AGAAAGAAGAGAA
1 AGAAAGAAGAAAA
89691140 AGAAAGAAAGAAAA
1 AGAAAG-AAGAAAA
*
89691154 AGAAAGGAGAAAA
1 AGAAAGAAGAAAA
89691167 TTTAGAGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (13 bp):
AGAAAGAAGAAAA
Found at i:89696593 original size:20 final size:20
Alignment explanation
Indices: 89696568--89696606 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
89696558 CCCTTACACC
89696568 ATTACATAATTGAAACTTTG
1 ATTACATAATTGAAACTTTG
89696588 ATTACATAATTGAAACTTT
1 ATTACATAATTGAAACTTT
89696607 TAAGAGAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (20 bp):
ATTACATAATTGAAACTTTG
Found at i:89708013 original size:28 final size:27
Alignment explanation
Indices: 89707957--89708013 Score: 62
Period size: 28 Copynumber: 2.0 Consensus size: 27
89707947 AAATACATAC
*
89707957 TGGGCCTAAGCCCATTGCAGATTCAAAT
1 TGGGCCTAAGCCCATT-CAGATACAAAT
*
89707985 TGGGCCTTAGCCCACTT-AGATACAGAAT
1 TGGGCCTAAGCCCA-TTCAGATACA-AAT
89708013 T
1 T
89708014 AGACATATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
27 6 0.24
28 17 0.68
29 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (27 bp):
TGGGCCTAAGCCCATTCAGATACAAAT
Found at i:89714337 original size:6 final size:6
Alignment explanation
Indices: 89714328--89714378 Score: 93
Period size: 6 Copynumber: 8.5 Consensus size: 6
89714318 AATAAAATTG
*
89714328 AAATGA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
89714376 AAA
1 AAA
89714379 GATAGGAGGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:89719779 original size:13 final size:13
Alignment explanation
Indices: 89719761--89719786 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
89719751 GGTTGTTTAT
89719761 TAAACTAATTAAC
1 TAAACTAATTAAC
89719774 TAAACTAATTAAC
1 TAAACTAATTAAC
89719787 ATATTAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:89728289 original size:13 final size:13
Alignment explanation
Indices: 89728271--89728299 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
89728261 GGTTGTTTAT
89728271 TAAACTAATTAAC
1 TAAACTAATTAAC
89728284 TAAACTAATTAAC
1 TAAACTAATTAAC
89728297 TAA
1 TAA
89728300 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:89735966 original size:45 final size:45
Alignment explanation
Indices: 89735869--89735995 Score: 138
Period size: 45 Copynumber: 2.9 Consensus size: 45
89735859 TTTTCTCAAA
* * *
89735869 TCACCGGCATT-TCGCCTGTTAGGCTCG-AGGCCCG-ATATCAGT
1 TCACCGGCATTATAGTCTGCTAGGCTCGAAGGCCCGAATATCAGT
*
89735911 TCACCAGCATTATAGTCTGCTAGGCTCGAAGGCCCGAATAGT-A-T
1 TCACCGGCATTATAGTCTGCTAGGCTCGAAGGCCCGAATA-TCAGT
* * *
89735955 CTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 -TCACCGGCATTATAGTCTGCTAGGCTCGAAGGCCCGAATA
89735996 ATCAAGTTAA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
42 10 0.14
43 13 0.18
44 8 0.11
45 40 0.56
46 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGTCTGCTAGGCTCGAAGGCCCGAATATCAGT
Found at i:89736373 original size:43 final size:43
Alignment explanation
Indices: 89736325--89736436 Score: 179
Period size: 43 Copynumber: 2.6 Consensus size: 43
89736315 CCTGCATTAT
* *
89736325 GCCTGCTAGGCACGAAGGCTCAAATACACATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGGCACGAA
* *
89736368 GCCTGCTAGGCATGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGGCACGAA
*
89736411 GCCTGCTAAGCACGAAGGCTCGAATA
1 GCCTGCTAGGCACGAAGGCTCGAATA
89736437 TAATACCAGC
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.31, C:0.30, G:0.25, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGGCACGAA
Found at i:89736477 original size:38 final size:38
Alignment explanation
Indices: 89736434--89736630 Score: 241
Period size: 38 Copynumber: 5.1 Consensus size: 38
89736424 GAAGGCTCGA
* * *
89736434 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
89736472 ATATAATACCAGCACGAAGCCTGCGAGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
** *
89736510 ATATTTTACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGG
* * * *
89736550 ATATAATACCAACACGAAGCCTACGGGATTTAAACCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* ** *
89736588 ATATAATACCAGCATGAAGCCTATGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
89736626 ATATA
1 ATATA
89736631 CATCGAATAT
Statistics
Matches: 136, Mismatches: 21, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
38 98 0.72
39 10 0.07
40 28 0.21
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:89736566 original size:78 final size:76
Alignment explanation
Indices: 89736434--89736630 Score: 232
Period size: 78 Copynumber: 2.6 Consensus size: 76
89736424 GAAGGCTCGA
* * * * *
89736434 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCTGCGAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAGCCCGGATATAATACCAACACGAAGCCTACGAG
* *
89736499 ATTTAACCCGG
66 ATTTAAACCAG
** *
89736510 ATATTTTACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAATACCAACACGAAGCCTACG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTT-AGCCCGGATATAATACCAACACGAAGCCTACG
*
89736575 GGATTTAAACCAG
64 AGATTTAAACCAG
* ** * *
89736588 ATATAATACCAGCATGAAGCCTATGGGATTTAACCTGGATATA
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAGCCCGGATATA
89736631 CATCGAATAT
Statistics
Matches: 100, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
76 33 0.33
77 6 0.06
78 61 0.61
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (76 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAGCCCGGATATAATACCAACACGAAGCCTACGAG
ATTTAAACCAG
Found at i:89741985 original size:16 final size:16
Alignment explanation
Indices: 89741949--89742001 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
89741939 GTTATATACT
* *
89741949 CATGAATTGAGTATGG
1 CATGAAATGAGTATTG
*
89741965 TATGAAATGATGTATT-
1 CATGAAATGA-GTATTG
*
89741981 CATGAATTGAGTATTG
1 CATGAAATGAGTATTG
89741997 CATGA
1 CATGA
89742002 CTGATGCCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 5 0.17
16 21 0.70
17 4 0.13
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.36
Consensus pattern (16 bp):
CATGAAATGAGTATTG
Found at i:89743255 original size:13 final size:13
Alignment explanation
Indices: 89743231--89743265 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
89743221 CAGCCCGCCC
89743231 ATATTA-TTTTTT
1 ATATTATTTTTTT
89743243 ATATTATTTTTTT
1 ATATTATTTTTTT
*
89743256 ATATAATTTT
1 ATATTATTTT
89743266 AAAATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
ATATTATTTTTTT
Found at i:89743503 original size:22 final size:22
Alignment explanation
Indices: 89743478--89743520 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
89743468 TATCCAAACA
89743478 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
89743500 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
89743521 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:89743524 original size:11 final size:11
Alignment explanation
Indices: 89743485--89743525 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
89743475 ACAATAACAA
89743485 CAAAATAGTAG
1 CAAAATAGTAG
* *
89743496 CAACATAATAG
1 CAAAATAGTAG
*
89743507 TAAAATAGTAG
1 CAAAATAGTAG
89743518 CAAAATAG
1 CAAAATAG
89743526 GGAGAAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:89748044 original size:40 final size:40
Alignment explanation
Indices: 89747843--89748036 Score: 327
Period size: 40 Copynumber: 4.9 Consensus size: 40
89747833 ATTCGGATTG
89747843 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
89747882 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
89747922 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
89747962 ATAACCGGGCTAAGTCCCGAAGGTAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
89748002 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
89748037 AAGCTATATC
Statistics
Matches: 145, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 13 0.09
40 132 0.91
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:89748044 original size:80 final size:80
Alignment explanation
Indices: 89747843--89748065 Score: 335
Period size: 80 Copynumber: 2.8 Consensus size: 80
89747833 ATTCGGATTG
*
89747843 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGTA
*
89747907 TTTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* * *
89747922 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGTA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGTA
89747987 ATTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* * **
89748002 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-AAGCTATATCC-GGCTAAACCCCGAAGGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGGT
89748065 A
65 A
89748066 CTTGGTTTGG
Statistics
Matches: 130, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 30 0.23
80 100 0.77
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGTA
ATTGTGCGAGTTACT
Found at i:89755980 original size:79 final size:79
Alignment explanation
Indices: 89755847--89756079 Score: 396
Period size: 79 Copynumber: 2.9 Consensus size: 79
89755837 ATTCGGATTG
* *
89755847 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCAAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
89755911 TTTGTGCGAGTTACT
65 TTTGTGCGAGTTACT
* *
89755926 ATAACCGGGCCAAGTCCCGAAGGCATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAT
89755991 TTGTGCGAGTTACT
66 TTGTGCGAGTTACT
89756005 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
*
89756070 TTTGAGCGAG
65 TTTGTGCGAG
89756080 AAGCTATATC
Statistics
Matches: 145, Mismatches: 7, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
79 87 0.60
80 58 0.40
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:89756087 original size:40 final size:40
Alignment explanation
Indices: 89755847--89756079 Score: 398
Period size: 40 Copynumber: 5.9 Consensus size: 40
89755837 ATTCGGATTG
89755847 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
89755886 ATATCCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
89755926 ATAACCGGGCCAAGTCCCGAAGGCA-TTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
89755965 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
89756005 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
89756045 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
89756080 AAGCTATATC
Statistics
Matches: 185, Mismatches: 7, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
39 50 0.27
40 135 0.73
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:89756095 original size:119 final size:118
Alignment explanation
Indices: 89755847--89756105 Score: 396
Period size: 119 Copynumber: 2.2 Consensus size: 118
89755837 ATTCGGATTG
* * *
89755847 ATAACCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCAAAGTCCCGAAGGCAT
1 ATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCAAAGTCCCGAAGGCAA
* *
89755912 TTGTGCGAGTTACTATAACCGGGCCAAGTCCCGAAGGCATTGTGCGAGTTACT
66 TTGTGCGAGTTACTATAACCGGGCCAAGTCCCGAAGGCATTGAGCGAGTAACT
*
89755965 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCAAAGTCCCGAAGGCA
*
89756030 ATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-AAGCT
65 ATTGTGCGAGTTACTATAACCGGGCCAAGTCCCGAAGGCA-TTGAGCGAGTAA-CT
* *
89756085 ATATCC-GGCTAAACCCGAAGG
1 ATAACCGGGCTAAGCCCGAAGG
89756106 TACTTGGTTT
Statistics
Matches: 129, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
118 22 0.17
119 92 0.71
120 15 0.12
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (118 bp):
ATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCAAAGTCCCGAAGGCAA
TTGTGCGAGTTACTATAACCGGGCCAAGTCCCGAAGGCATTGAGCGAGTAACT
Found at i:89759963 original size:14 final size:14
Alignment explanation
Indices: 89759944--89759971 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
89759934 TTAATCATTC
89759944 CAAGATTTTTTATA
1 CAAGATTTTTTATA
89759958 CAAGATTTTTTATA
1 CAAGATTTTTTATA
89759972 TGTAGCAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (14 bp):
CAAGATTTTTTATA
Found at i:89766195 original size:191 final size:190
Alignment explanation
Indices: 89765956--89766333 Score: 499
Period size: 191 Copynumber: 2.0 Consensus size: 190
89765946 GGCTCCACCA
*
89765956 TTATTTTGCTAGCAATCATAACTCATCATTAAGAATATAATTTGTGTTAAAAAATATAATTAAAT
1 TTATTTTGCTAGCAATCATAACCCATCATTAAGAATATAATTTGTGTTAAAAAATATAATTAAAT
* * * * *
89766021 GATGGAGGGAGTGGGACAGGCAACACATGTATCTAGTTTACACCGGTTAAAATACAGGTTGAGGA
66 GATGGAAGAAGTAGAACAGGCAACACATGTATCTAGTTTACACCGGTTAAAATACAGGTT-AAGA
* *
89766086 AAAA-TCATTTTTAAAGGCCGGAGAAAGG-AACATGAAAGGCAACACCAATGGAGGCATAGT
130 AAAATTAATTTTTAAAGGACGGAG-AAGGTAACATGAAAGGCAACACCAATGGAGGCATAGT
* *
89766146 TTATTTTGCTAGCAATCATAACCCTATCATTAAGTATATAATTTGTGTTAAAAAATATATTTAAA
1 TTATTTTGCTAGCAATCATAACCC-ATCATTAAGAATATAATTTGTGTTAAAAAATATAATTAAA
* * * * * * **
89766211 TGATGGAAGAAGTAGAAGAGGCGACACTTGTATGTAGTTTATACCGGTTATAATATGGGTTAAGA
65 TGATGGAAGAAGTAGAACAGGCAACACATGTATCTAGTTTACACCGGTTAAAATACAGGTTAAGA
* * * * * *
89766276 AAAATTAATTTTTAAAGGATGGAGGAGGTAACCTGACAGGCAACACTAGTGGAGGCAT
130 AAAATTAATTTTTAAAGGACGGAGAAGGTAACATGAAAGGCAACACCAATGGAGGCAT
89766334 CGTGTTAGGC
Statistics
Matches: 161, Mismatches: 24, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
190 33 0.20
191 128 0.80
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.29
Consensus pattern (190 bp):
TTATTTTGCTAGCAATCATAACCCATCATTAAGAATATAATTTGTGTTAAAAAATATAATTAAAT
GATGGAAGAAGTAGAACAGGCAACACATGTATCTAGTTTACACCGGTTAAAATACAGGTTAAGAA
AAATTAATTTTTAAAGGACGGAGAAGGTAACATGAAAGGCAACACCAATGGAGGCATAGT
Found at i:89769056 original size:19 final size:20
Alignment explanation
Indices: 89769015--89769055 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
89769005 TATTTAATTA
* *
89769015 TTTATGTTTAGTAATATAAT
1 TTTATGTTTAATAACATAAT
89769035 TTTAT-TTTAATAACAT-AT
1 TTTATGTTTAATAACATAAT
89769053 TTT
1 TTT
89769056 TGACAATAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 5 0.26
19 9 0.47
20 5 0.26
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTATGTTTAATAACATAAT
Found at i:89776329 original size:21 final size:21
Alignment explanation
Indices: 89776303--89776343 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
89776293 ATCTGCTCAA
* *
89776303 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
89776324 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
89776344 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:89779797 original size:15 final size:16
Alignment explanation
Indices: 89779777--89779814 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
89779767 ATAAATATGA
* *
89779777 TAAATTT-GTTCTTAT
1 TAAATTTCGTTATAAT
89779792 TAAATTTCGTTATAAT
1 TAAATTTCGTTATAAT
89779808 TAAATTT
1 TAAATTT
89779815 TATTATTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (16 bp):
TAAATTTCGTTATAAT
Found at i:89780491 original size:28 final size:30
Alignment explanation
Indices: 89780432--89780501 Score: 83
Period size: 28 Copynumber: 2.4 Consensus size: 30
89780422 AATTACATAA
* *
89780432 TTAGTCA-TCAAACTATTAAGTTCTTTTGTT
1 TTAGTCACTC-AATTATTAAGTTCTTTTATT
*
89780462 TTGGTCACTCAATTATTAA-TT-TTTTATT
1 TTAGTCACTCAATTATTAAGTTCTTTTATT
89780490 TTAGTCACTCAA
1 TTAGTCACTCAA
89780502 CTTTTCAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
28 17 0.49
29 2 0.06
30 14 0.40
31 2 0.06
ACGTcount: A:0.27, C:0.14, G:0.09, T:0.50
Consensus pattern (30 bp):
TTAGTCACTCAATTATTAAGTTCTTTTATT
Found at i:89782834 original size:11 final size:9
Alignment explanation
Indices: 89782818--89782843 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
89782808 AAAATGCATG
89782818 TATATATAT
1 TATATATAT
89782827 TATATATAT
1 TATATATAT
89782836 TATATATA
1 TATATATA
89782844 CATGTATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
TATATATAT
Found at i:89783407 original size:18 final size:19
Alignment explanation
Indices: 89783371--89783411 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
89783361 ATAATAAGAA
89783371 AAATATAATGTGAAAATTG
1 AAATATAATGTGAAAATTG
*
89783390 AAATTTAATGTG-AAATTG
1 AAATATAATGTGAAAATTG
89783408 AAAT
1 AAAT
89783412 GTGTAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.51, C:0.00, G:0.15, T:0.34
Consensus pattern (19 bp):
AAATATAATGTGAAAATTG
Found at i:89784151 original size:43 final size:43
Alignment explanation
Indices: 89784085--89784169 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
89784075 TGTGATTGAT
* *
89784085 ATTGAAATGGCAAAGACGGGAAATGAATATGAGATGAGAAATA
1 ATTGAAATGACAAAGACGAGAAATGAATATGAGATGAGAAATA
* * *
89784128 ATTGAAATGACAAATATGAGAAATGATTATGAGATGAGAAAT
1 ATTGAAATGACAAAGACGAGAAATGAATATGAGATGAGAAAT
89784170 GAAAGATGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.49, C:0.04, G:0.25, T:0.22
Consensus pattern (43 bp):
ATTGAAATGACAAAGACGAGAAATGAATATGAGATGAGAAATA
Found at i:89785229 original size:21 final size:22
Alignment explanation
Indices: 89785193--89785234 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
89785183 TCCCTGAAAT
*
89785193 CAAAATTTTTGTAATTATTTCC
1 CAAAATTTTAGTAATTATTTCC
*
89785215 CAAAATTTTAG-AATTGTTTC
1 CAAAATTTTAGTAATTATTTC
89785235 AAATTAGTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.33, C:0.12, G:0.07, T:0.48
Consensus pattern (22 bp):
CAAAATTTTAGTAATTATTTCC
Found at i:89785550 original size:49 final size:49
Alignment explanation
Indices: 89785473--89785580 Score: 162
Period size: 49 Copynumber: 2.2 Consensus size: 49
89785463 TCTAGATGGG
* * * *
89785473 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACTAAGTTTAGCAATGT
1 ATAAATAGTGATAAGAGTGTAAACAGTGGAAGACCAAGTTTAGAAATGC
*
89785522 ATAAATAGTGATAAGAGTGTAAATAGTGGAAGACCAAGTTTAGAAATGC
1 ATAAATAGTGATAAGAGTGTAAACAGTGGAAGACCAAGTTTAGAAATGC
89785571 ATAACATAGT
1 ATAA-ATAGT
89785581 TTATTATTCG
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
49 48 0.91
50 5 0.09
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.26
Consensus pattern (49 bp):
ATAAATAGTGATAAGAGTGTAAACAGTGGAAGACCAAGTTTAGAAATGC
Found at i:89794550 original size:23 final size:23
Alignment explanation
Indices: 89794498--89794550 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
89794488 TTAGGGGTCG
* **
89794498 AAATT-AAATTATAATTTTTATG
1 AAATTAAAAATATAATTTTTAAA
* *
89794520 ATAGTAAAAATATAATTTTTAAA
1 AAATTAAAAATATAATTTTTAAA
89794543 AAATTAAA
1 AAATTAAA
89794551 TTAAAATTTT
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (23 bp):
AAATTAAAAATATAATTTTTAAA
Found at i:89803318 original size:17 final size:17
Alignment explanation
Indices: 89803282--89803320 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
89803272 ATCAAACATG
* * *
89803282 AAAATTAAATAAATTTA
1 AAAATCAAATAAACTAA
89803299 AAAATCAAATAAACTAA
1 AAAATCAAATAAACTAA
89803316 AAAAT
1 AAAAT
89803321 ATTCAAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAATCAAATAAACTAA
Found at i:89807155 original size:39 final size:39
Alignment explanation
Indices: 89807101--89807177 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
89807091 CAGTACATGT
89807101 GTATGTTAAATTTCAAATAAAGAAAACATTGTTCCTTGC
1 GTATGTTAAATTTCAAATAAAGAAAACATTGTTCCTTGC
89807140 GTATGTTAAATTTCAAATAAAGAAAACATTGTTCCTTG
1 GTATGTTAAATTTCAAATAAAGAAAACATTGTTCCTTG
89807178 ACATGTCTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (39 bp):
GTATGTTAAATTTCAAATAAAGAAAACATTGTTCCTTGC
Found at i:89809073 original size:46 final size:46
Alignment explanation
Indices: 89808999--89809165 Score: 148
Period size: 46 Copynumber: 3.6 Consensus size: 46
89808989 TGATATGTGT
* *
89808999 GCTAGTGTAAGACATGTCTGGGATATGCATTGGCCACATTACGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATTGGCCACATTACGAGA
*
89809045 GCTAGTGTAAGATATGTCTAGGACATGCA-T---CAGCATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATTGGCCA-CATT---ACGAGA
* * * *
89809091 GCTAGTGTAAGACACGTCTGGGACATGCATCGGCCTCGAGATATAC-A-A
1 GCTAGTGTAAGACATGTCTAGGACATGCATTGG-C-C-ACAT-TACGAGA
*
89809139 GCTAGTGTAAGACCTGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTAGGACATG
89809166 GCGTCAGCTT
Statistics
Matches: 98, Mismatches: 11, Indels: 22
0.75 0.08 0.17
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 1 0.01
46 58 0.59
48 25 0.26
49 1 0.01
50 2 0.02
52 3 0.03
53 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATTGGCCACATTACGAGA
Found at i:89815923 original size:47 final size:47
Alignment explanation
Indices: 89815871--89816360 Score: 735
Period size: 47 Copynumber: 10.6 Consensus size: 47
89815861 GATAATTGTG
* *
89815871 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
89815918 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
89815965 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
89816012 ATGTGAAACTG----TA--T-AT-AGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
89816051 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
89816098 ATATGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
89816145 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
89816194 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
89816241 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
89816288 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
89816335 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
89816361 TCCTGAAGGG
Statistics
Matches: 405, Mismatches: 28, Indels: 20
0.89 0.06 0.04
Matches are distributed among these distances:
39 31 0.08
40 2 0.00
41 1 0.00
43 4 0.01
45 1 0.00
46 2 0.00
47 319 0.79
49 45 0.11
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:89816034 original size:39 final size:39
Alignment explanation
Indices: 89815989--89816067 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
89815979 ATATGTGATA
89815989 AGGCCTAATAGCCAATGTGATGAATGTGAAACTGTATAT
1 AGGCCTAATAGCCAATGTGATGAATGTGAAACTGTATAT
* * *
89816028 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 AGGCCTAATAGCCAATGTGATGAATGTGAAACTGTATAT
89816067 A
1 A
89816068 TGTGATAAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28
Consensus pattern (39 bp):
AGGCCTAATAGCCAATGTGATGAATGTGAAACTGTATAT
Found at i:89816191 original size:143 final size:141
Alignment explanation
Indices: 89815871--89816360 Score: 726
Period size: 133 Copynumber: 3.5 Consensus size: 141
89815861 GATAATTGTG
* * *
89815871 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * *
89815936 GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGC
66 GTGATAAGGCCTAATAGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCGAATGGC
89816001 CAATGTGATGA
131 CAATGTGATGA
*
89816012 ATGTGAAACTG--TATA--T----AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
89816069 GTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCGAATGGC
66 GTGATAAGGCCTAATAGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCGAATGGC
89816134 CAATGTGATGA
131 CAATGTGATGA
*
89816145 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
89816210 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
64 ATGTGATAAGGCCTAATAGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCGAATG
*
89816275 GCCGATGTGATGA
129 GCCAATGTGATGA
* * * * * * *
89816288 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
89816353 GTGATAAG
66 GTGATAAG
89816361 TCCTGAAGGG
Statistics
Matches: 318, Mismatches: 21, Indels: 20
0.89 0.06 0.06
Matches are distributed among these distances:
133 123 0.39
137 5 0.02
139 5 0.02
141 62 0.19
143 123 0.39
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (141 bp):
ATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATAGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCGAATGGC
CAATGTGATGA
Found at i:89819692 original size:47 final size:46
Alignment explanation
Indices: 89819627--89819747 Score: 145
Period size: 47 Copynumber: 2.6 Consensus size: 46
89819617 TTTGTGTGCC
* *
89819627 AGTGTAAGACGTGTCTAGGACATGCATAGGCA-ACATTATGAGAGCT
1 AGTGTAAGACATGTCTAGGACATGCATAGGCATACA-GATGAGAGCT
* * **
89819673 AGTGTAAGGCCATGTCTAGGACATGGCATCGGCATTGAGATGAGAGCT
1 AGTGTAA-GACATGTCTAGGACAT-GCATAGGCATACAGATGAGAGCT
*
89819721 AGTGTAAGACATGTCTAGGACGTGCAT
1 AGTGTAAGACATGTCTAGGACATGCAT
89819748 TAGCCTCGAA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
46 11 0.17
47 28 0.44
48 24 0.38
49 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATAGGCATACAGATGAGAGCT
Found at i:89819793 original size:46 final size:44
Alignment explanation
Indices: 89819721--89819843 Score: 131
Period size: 46 Copynumber: 2.7 Consensus size: 44
89819711 GATGAGAGCT
* * *
89819721 AGTGTAAGACATGTCTAGGACGTGCATTAGCCT-CGAAATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAAATGT--GCC
* * *
89819767 AGTGTAAGACATGTCTGGGATATGCATCAGCTACGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTACGAAATGTGCC
*
89819811 AATGTAAGACCATGTCTGGGACATGGCATCAGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC
89819844 ACATATAGAG
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
44 10 0.15
45 15 0.23
46 41 0.62
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTACGAAATGTGCC
Found at i:89819872 original size:48 final size:49
Alignment explanation
Indices: 89819666--89819988 Score: 153
Period size: 48 Copynumber: 6.8 Consensus size: 49
89819656 GCAACATTAT
* * * * *
89819666 GAGAGCTAGTGTAAGGCCATGTCTAGGACATGGCATCGGC--ATTGA-GA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAGAAT-ATGA
* * * * *
89819713 TGAGAGCTAGTGTAAGA-CATGTCTAGGACGT-GCATTAGCCTCGAA-ATG-
1 -GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-C-AGAATATGA
* * *
89819761 TA-AGCCAGTGTAAGA-CATGTCTGGGATAT-GCATCAGC----TACGA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAGAATATGA
* * * *
89819803 GATGTGTCAATGTAAGACCATGTCTGGGACATGGCATCAGCA-CATAT-A
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAGAATATGA
* * ** *
89819851 GAG-GCATCAGTGTAAAACCATGTTTGGGACATGGCATTGGCATGAATATGT
1 GAGAGC--CAGTGTAAGACCATGTCTGGGACATGGCATCAGCA-GAATATGA
* ** * **
89819902 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCTCG-AT-TTT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-C-AGAATATGA
* *
89819951 GATAGTCAGTGTAAGACCATGTCTGGGACATGGCATCA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA
89819989 ACTTGATGGA
Statistics
Matches: 217, Mismatches: 36, Indels: 43
0.73 0.12 0.15
Matches are distributed among these distances:
41 2 0.01
42 1 0.00
44 10 0.05
45 14 0.06
46 43 0.20
47 16 0.07
48 49 0.23
49 38 0.18
50 37 0.17
51 5 0.02
52 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (49 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAGAATATGA
Found at i:89819921 original size:50 final size:49
Alignment explanation
Indices: 89819813--89819986 Score: 178
Period size: 49 Copynumber: 3.6 Consensus size: 49
89819803 GATGTGTCAA
** *
89819813 TGTAAGACCATGTCTGGGACATGGCATCAGCA-C-A-TAT-AGAGGCATCAG
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATTGTGAGA-GC--CAG
* *
89819861 TGTAAAACCATGTTTGGGACATGGCATTGGCAT-GAATATGTGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCG-AT-TGTGAGAGCCAG
* * * * *
89819911 TGTAAGACCATGTCTGGGACATGGCGTTGGCCTCGATTTTGATAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATTGTGAGAGCCAG
89819960 TGTAAGACCATGTCTGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
89819987 CAACTTGATG
Statistics
Matches: 106, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
48 28 0.26
49 35 0.33
50 35 0.33
51 1 0.01
52 4 0.04
53 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (49 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCATCGATTGTGAGAGCCAG
Found at i:89819973 original size:49 final size:50
Alignment explanation
Indices: 89819808--89819986 Score: 181
Period size: 50 Copynumber: 3.6 Consensus size: 50
89819798 TACGAGATGT
* ** * *
89819808 GTCAATGTAAGACCATGTCTGGGACATGGCATCAGCA--CATAT-AGAG-
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATGAATATGTGAGA
* *
89819854 GCATCAGTGTAAAACCATGTTTGGGACATGGCATTGGCATGAATATGTGAGA
1 G--TCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATGAATATGTGAGA
* * * * *
89819906 GCCAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCTCG-AT-TTTGATA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCAT-GAATATGTGAGA
89819955 GTCAGTGTAAGACCATGTCTGGGACATGGCAT
1 GTCAGTGTAAGACCATGTCTGGGACATGGCAT
89819987 CAACTTGATG
Statistics
Matches: 110, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
46 1 0.01
48 31 0.28
49 35 0.32
50 38 0.35
51 4 0.04
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATGAATATGTGAGA
Found at i:89829040 original size:46 final size:46
Alignment explanation
Indices: 89828987--89829150 Score: 149
Period size: 46 Copynumber: 3.5 Consensus size: 46
89828977 TATGTGTGCT
*
89828987 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTGACAAGAGCC
* * * *
89829033 AGTGTAAGACATGTCTAGGACATGCATTGG--CATTGAGACAAGATCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCCATT--GACAAGAGCC
* * *
89829079 AGTGTAAGACATGTCTGGGACAAGCATCGG-CC-TTGAGATAGACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTGACA-AG---AGCC
*
89829127 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
89829151 GCGCCAGCTT
Statistics
Matches: 98, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
43 4 0.04
44 3 0.03
45 2 0.02
46 63 0.64
47 1 0.01
48 25 0.26
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTGACAAGAGCC
Found at i:89829235 original size:49 final size:48
Alignment explanation
Indices: 89829170--89829342 Score: 152
Period size: 49 Copynumber: 3.6 Consensus size: 48
89829160 TGTTGTGTGT
* * * *
89829170 CAGTGTAAGACTTGTCTGGGACATGGCATCAACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATAAAAGC
* * * * * * *
89829219 CAGTGTAAGACCTGTCTAGGATACGACATCGGCCACGATATATAAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACC-CGATAGATAAAAGC
** ***
89829268 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGAT-G-TTCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATAAAAGC
89829315 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
89829343 GTCGGCATCT
Statistics
Matches: 98, Mismatches: 23, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
47 15 0.15
48 16 0.16
49 67 0.68
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATAAAAGC
Found at i:89838761 original size:93 final size:93
Alignment explanation
Indices: 89838654--89838824 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
89838644 GCCCCTAAGT
* *
89838654 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
89838719 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
89838747 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
89838812 CGAGTTCGGATGC
66 CGAGTTCGGATGC
89838825 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:89838821 original size:46 final size:46
Alignment explanation
Indices: 89838649--89838821 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
89838639 AACCCGCCCC
* * *
89838649 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
89838695 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
89838743 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
89838788 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
89838822 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:89839274 original size:30 final size:30
Alignment explanation
Indices: 89839240--89839299 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
89839230 ATTTAATACG
89839240 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
89839270 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
89839300 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:89846260 original size:46 final size:46
Alignment explanation
Indices: 89846193--89846363 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
89846183 TAACCCCCCC
* *
89846193 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
89846239 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
89846287 TCA-CGAACTCAGACTCAACTCAACGAGTTC-GACATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
89846331 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG
89846364 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
44 2 0.02
45 25 0.24
46 33 0.32
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:89846356 original size:92 final size:93
Alignment explanation
Indices: 89846198--89846367 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
89846188 CCCCCTAAGT
* * *
89846198 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
89846263 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
89846291 GAACTCAGACTCAACTCAACGAGTTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
89846355 CGAGTTCGGATGC
66 CGAGTTCGGATGC
89846368 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 48 0.67
93 24 0.33
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:89849038 original size:39 final size:40
Alignment explanation
Indices: 89848984--89849131 Score: 230
Period size: 39 Copynumber: 3.8 Consensus size: 40
89848974 ATATATGTCA
89848984 TGCTGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCG
1 TGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGCATTCG
*
89849023 TGCTGGTGTTATATCCGGGCT-AAGTCTCGAAGGCATTCG
1 TGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGCATTCG
* *
89849062 TGCTGGTGTTATATCCGGGCTAAAGTCCCGCAGGC-TTTG
1 TGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGCATTCG
*
89849101 TGCTGGTATTATATCCGGGCTTAAAGTCCCG
1 TGCTGGTGTTATATCCGGGC-TAAAGTCCCG
89849132 CATGCTTTGT
Statistics
Matches: 102, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
39 81 0.79
40 21 0.21
ACGTcount: A:0.18, C:0.22, G:0.30, T:0.30
Consensus pattern (40 bp):
TGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGCATTCG
Found at i:89855837 original size:27 final size:27
Alignment explanation
Indices: 89855775--89855849 Score: 75
Period size: 27 Copynumber: 2.7 Consensus size: 27
89855765 CAAATTGTTT
*
89855775 TATT-AGCACTATGTGTGCGAGGTTGAT
1 TATTAAGCACTA-GTGTGCGAGGTTGAC
89855802 TA-TATAGCACTAGTGTGCGA-GTTCGAC
1 TATTA-AGCACTAGTGTGCGAGGTT-GAC
89855829 TATTAAGCAACTAAGTGTGCG
1 TATTAAGC-ACT-AGTGTGCG
89855850 GGCTTATTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
26 4 0.10
27 17 0.41
28 12 0.29
29 8 0.20
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (27 bp):
TATTAAGCACTAGTGTGCGAGGTTGAC
Found at i:89863988 original size:27 final size:28
Alignment explanation
Indices: 89863925--89864022 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
89863915 CATGAGATTG
* * *
89863925 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTTC-GATTATATA
89863954 GCACTAAGTGTGCGAGTT-GATTATATA
1 GCACTAAGTGTGCGAGTTCGATTATATA
*
89863981 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTCGATTATAT-A
89864009 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
89864023 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
27 26 0.41
28 20 0.32
29 17 0.27
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTCGATTATATA
Found at i:89871965 original size:28 final size:28
Alignment explanation
Indices: 89871928--89872001 Score: 107
Period size: 28 Copynumber: 2.6 Consensus size: 28
89871918 GTTCAAATTG
*
89871928 TATAGCACTAAGTGTGCGAGGTT-GATTA
1 TATAGCACTAAGTGTGCGA-GTTCGACTA
89871956 TATAGCACTAAGTGTGCGAGTTCGACTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
89871984 T-TAAGCACTAAGTGTGCG
1 TAT-AGCACTAAGTGTGCG
89872002 GGCTTATTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
27 4 0.09
28 39 0.91
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAGTTCGACTA
Found at i:89878705 original size:26 final size:26
Alignment explanation
Indices: 89878674--89878781 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
89878664 TGAAATGCCC
*
89878674 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
89878700 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
89878726 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
89878752 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
89878778 ATCA
1 ATCA
89878782 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:89881557 original size:30 final size:30
Alignment explanation
Indices: 89881521--89881581 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
89881511 TCCTTAACTC
89881521 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
89881551 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
89881581 A
1 A
89881582 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:89884277 original size:30 final size:28
Alignment explanation
Indices: 89884233--89884292 Score: 75
Period size: 30 Copynumber: 2.1 Consensus size: 28
89884223 GACATGGCCA
*
89884233 TGACACACAGGCGTGTGGACTACCCGTG
1 TGACACACAGGCGTGTAGACTACCCGTG
* *
89884261 TGACACACACGAGCGTGTAGATTACTCGTG
1 TGACACACA-G-GCGTGTAGACTACCCGTG
89884291 TG
1 TG
89884293 GAAATACCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 9 0.33
29 1 0.04
30 17 0.63
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (28 bp):
TGACACACAGGCGTGTAGACTACCCGTG
Found at i:89885160 original size:33 final size:33
Alignment explanation
Indices: 89885114--89885214 Score: 112
Period size: 33 Copynumber: 3.0 Consensus size: 33
89885104 GCATTATTGC
* *
89885114 ATTACACTATTACTGTATAGGGCTAAGGCCTAG
1 ATTATACTGTTACTGTATAGGGCTAAGGCCTAG
* *
89885147 ATTATACTGTTACTGTATAGGGCCAAGGCCCAG
1 ATTATACTGTTACTGTATAGGGCTAAGGCCTAG
* * * * *
89885180 ATTGTATTGATTACTGAATAAGGCTCAGGCCTAG
1 ATTATACTG-TTACTGTATAGGGCTAAGGCCTAG
89885214 A
1 A
89885215 CCGTTACTGT
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
33 36 0.64
34 20 0.36
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (33 bp):
ATTATACTGTTACTGTATAGGGCTAAGGCCTAG
Found at i:89886986 original size:15 final size:16
Alignment explanation
Indices: 89886962--89886991 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
89886952 TAAATTGTGA
89886962 GAAAATAAAAGTTTAG
1 GAAAATAAAAGTTTAG
89886978 GAAAA-AAAAGTTTA
1 GAAAATAAAAGTTTA
89886992 ATTAATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.60, C:0.00, G:0.17, T:0.23
Consensus pattern (16 bp):
GAAAATAAAAGTTTAG
Found at i:89893258 original size:104 final size:104
Alignment explanation
Indices: 89893078--89893291 Score: 419
Period size: 104 Copynumber: 2.1 Consensus size: 104
89893068 TTAGTTATAT
89893078 TCATTTACTTAATTGTAACCCAAGGTAAGAGTTTTGTTTAAATACCTATAAACTTACTAAGCTTT
1 TCATTTACTTAATTGTAACCCAAGGTAAGAGTTTTGTTTAAATACCTATAAACTTACTAAGCTTT
89893143 ATAAGCTTACTCTATCACTTTTCCTCTTTTCTGTAGCTA
66 ATAAGCTTACTCTATCACTTTTCCTCTTTTCTGTAGCTA
*
89893182 TCATTTACTTAATTGTAACCCAAGGTAAGAGTTTTGTTTAAATACCTATTAACTTACTAAGCTTT
1 TCATTTACTTAATTGTAACCCAAGGTAAGAGTTTTGTTTAAATACCTATAAACTTACTAAGCTTT
89893247 ATAAGCTTACTCTATCACTTTTCCTCTTTTCTGTAGCTA
66 ATAAGCTTACTCTATCACTTTTCCTCTTTTCTGTAGCTA
89893286 TCATTT
1 TCATTT
89893292 GCAAAACTGG
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 109 1.00
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.43
Consensus pattern (104 bp):
TCATTTACTTAATTGTAACCCAAGGTAAGAGTTTTGTTTAAATACCTATAAACTTACTAAGCTTT
ATAAGCTTACTCTATCACTTTTCCTCTTTTCTGTAGCTA
Found at i:89895266 original size:49 final size:48
Alignment explanation
Indices: 89895194--89895369 Score: 169
Period size: 51 Copynumber: 3.5 Consensus size: 48
89895184 CTGATACGCA
*
89895194 TAGTAGCCTGCACTTAGTACTACACATGCAATCAACAATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCAATCAACAAT-TGGTACATG
* **
89895243 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC-ATTGAGT--ATG
1 TAGTAGCCTGCACTTAGTACTACACATGCAATC-AA--CAATTG-GTACATG
* * * *
89895292 CATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAATATGATACACG
1 --TAGTAGCCTGCACTTAGTACTACACATGC-AATCAACAAT-TGGTACATG
*
89895344 TAGTAGCCTACACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
89895370 CTTGTATTCA
Statistics
Matches: 104, Mismatches: 12, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
49 34 0.33
50 31 0.30
51 35 0.34
52 4 0.04
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGCAATCAACAATTGGTACATG
Found at i:89901075 original size:51 final size:51
Alignment explanation
Indices: 89901015--89901117 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
89901005 AAAGGAAAAT
*
89901015 AAAGGGGGTAAGCATTAAGCTTAGTACGTTTGCATGAAAATAAATAACAAC
1 AAAGGGGGTAAGCATTAAGCTTAGTAAGTTTGCATGAAAATAAATAACAAC
89901066 AAAGGGGGTAAGCATTAAGCTTAGTAAGTTTGCATGAAAATAAATAACAAC
1 AAAGGGGGTAAGCATTAAGCTTAGTAAGTTTGCATGAAAATAAATAACAAC
89901117 A
1 A
89901118 TTCATAAGAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (51 bp):
AAAGGGGGTAAGCATTAAGCTTAGTAAGTTTGCATGAAAATAAATAACAAC
Found at i:89901334 original size:25 final size:24
Alignment explanation
Indices: 89901306--89901352 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
89901296 ACCTTTGCTC
*
89901306 TTTTAGCATGAACTTGTCTTACCCT
1 TTTTAGCAT-AACTCGTCTTACCCT
*
89901331 TTTTAGTATAACTCGTCTTACC
1 TTTTAGCATAACTCGTCTTACC
89901353 TTACCTTACC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.21, C:0.23, G:0.11, T:0.45
Consensus pattern (24 bp):
TTTTAGCATAACTCGTCTTACCCT
Found at i:89901550 original size:53 final size:54
Alignment explanation
Indices: 89901444--89901677 Score: 259
Period size: 55 Copynumber: 4.4 Consensus size: 54
89901434 CATGACTTTT
* * * *
89901444 CATGGTCTTACGTGGTATCC-T---TT-TGAAACTTACCATTGCCATGTCTCGA
1 CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGCCTTGA
* * *
89901493 CATGGTCTTACATGGTATTCTTGCCATATG-AACTTACCAATGCCATGCCTTGG
1 CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGCCTTGA
* * *
89901546 CATGGTCTTACATGGGA-CCTTTGCCTTATAGAAACTTATCAATGCCATGTCTTGA
1 CATGGTCTTACATGGTATCC-TTGCCTTAT-GAAACTTACCAATGCCATGCCTTGA
* * *
89901601 CATGGTCTTACATGATATCCTTGCCTTA-GAAACCTTACCAATTTCCATGCCTTGG
1 CATGGTCTTACATGGTATCCTTGCCTTATGAAA-CTTACCAA-TGCCATGCCTTGA
89901656 CATGGTCTTACATGGTATCCTT
1 CATGGTCTTACATGGTATCCTT
89901678 AAATCCTAAT
Statistics
Matches: 154, Mismatches: 20, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
49 18 0.12
50 1 0.01
52 1 0.01
53 48 0.31
54 10 0.06
55 74 0.48
56 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (54 bp):
CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGCCTTGA
Found at i:89901606 original size:108 final size:110
Alignment explanation
Indices: 89901468--89901670 Score: 313
Period size: 108 Copynumber: 1.9 Consensus size: 110
89901458 GTATCCTTTT
* * *
89901468 GAAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATTCTTGCCATATG-AA-CTTACC
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCATA-GAAACCTTACC
89901531 AA-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
65 AATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
* * *
89901576 GAAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTACCA
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCATAGAAACCTTACCA
*
89901641 ATTTCCATGCCTTGGCATGGTCTTACATGG
66 ATTGCCATGCCTTGGCATGGTCTTACATGG
89901671 TATCCTTAAA
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 8 0.09
110 27 0.32
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (110 bp):
GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCATAGAAACCTTACCA
ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
Found at i:89906960 original size:64 final size:64
Alignment explanation
Indices: 89906880--89907062 Score: 192
Period size: 67 Copynumber: 2.8 Consensus size: 64
89906870 AGACATTATG
* *
89906880 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
89906944 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
89907009 AA
63 AA
* * * *
89907011 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAG
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAG
89907063 TCGAACTATA
Statistics
Matches: 97, Mismatches: 17, Indels: 11
0.78 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:89912021 original size:53 final size:54
Alignment explanation
Indices: 89911899--89912153 Score: 258
Period size: 55 Copynumber: 4.8 Consensus size: 54
89911889 ACACAGGTAC
* * * * *
89911899 CTTACCAGTGCCATGACTTGTCATGGTCTTACGTGGTATCC--G--TT-TGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATAGTATCCTTGCCTTATGAAA
* * *
89911948 CTTACCATTGCCATGTCTTGGCATGGTTTTACATAGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATAGTATCCTTGCCTTATGAAA
* * * *
89912001 CTCACCAATGCCATGCCTTGGCATGGTTTTACGTAGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATAGTATCC-TTGCCTTAT-GAAA
* * *
89912056 CTTATCAATGCCATGTCTTGACATGGTCTTACAT-GATATCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATAG-TATCCTTGCCTTATGAAA
*
89912109 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATAGTATCCTT
89912154 AAACCCTAAT
Statistics
Matches: 172, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
49 35 0.20
51 1 0.01
52 2 0.01
53 50 0.29
54 11 0.06
55 70 0.41
56 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGGCATGGTCTTACATAGTATCCTTGCCTTATGAAA
Found at i:89912096 original size:108 final size:110
Alignment explanation
Indices: 89911944--89912142 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 110
89911934 GTATCCGTTT
* * *
89911944 GAAACTTACCATTGCCATGTCTTGGCATGGTTTTACATAGTATCCTTGCCTTATG-AA-CTCACC
1 GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATAGTATCCTTGCCTTA-GAAACCTCACC
*
89912007 AA-TGCCATGCCTTGGCATGGTTTTACGTAGGACCTTTGCCTTATA
65 AATTGCCATGCCTTGGCATGGTCTTACGTAGGACCTTTGCCTTATA
* *
89912052 GAAACTTATCAATGCCATGTCTTGACATGGTCTTACAT-GATATCCTTGCCTTAGAAACCTTACC
1 GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATAG-TATCCTTGCCTTAGAAACCTCACC
89912116 AATTGCCATGCCTTGGCATGGTCTTAC
65 AATTGCCATGCCTTGGCATGGTCTTAC
89912143 ATGGTATCCT
Statistics
Matches: 81, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
107 2 0.02
108 49 0.60
109 7 0.09
110 23 0.28
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATAGTATCCTTGCCTTAGAAACCTCACCA
ATTGCCATGCCTTGGCATGGTCTTACGTAGGACCTTTGCCTTATA
Found at i:89914641 original size:88 final size:88
Alignment explanation
Indices: 89914492--89914668 Score: 327
Period size: 88 Copynumber: 2.0 Consensus size: 88
89914482 GTACTTTTAT
*
89914492 AAATATTTACGGAGTGTCACTGAGGTAGTATTAAATTTTCGATGAAAAATTTTAACATTTCGATT
1 AAATATTTACGGAGTGTCACTGAGGTAGTATTAAAGTTTCGATGAAAAATTTTAACATTTCGATT
89914557 GTTAATTAATTAAAAACTACTAA
66 GTTAATTAATTAAAAACTACTAA
* *
89914580 AAATATTTACGGAGTGTCACTGAGGTAGTATTAAAGTTTCGATGAAAAGTTTTAACGTTTCGATT
1 AAATATTTACGGAGTGTCACTGAGGTAGTATTAAAGTTTCGATGAAAAATTTTAACATTTCGATT
89914645 GTTAATTAATTAAAAACTACTAA
66 GTTAATTAATTAAAAACTACTAA
89914668 A
1 A
89914669 TTAAAAAAGG
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (88 bp):
AAATATTTACGGAGTGTCACTGAGGTAGTATTAAAGTTTCGATGAAAAATTTTAACATTTCGATT
GTTAATTAATTAAAAACTACTAA
Found at i:89915788 original size:21 final size:21
Alignment explanation
Indices: 89915764--89915889 Score: 125
Period size: 21 Copynumber: 6.1 Consensus size: 21
89915754 GTGTTTTACT
*
89915764 TTCTATTTATCTCTTACGAGC
1 TTCTATTTAGCTCTTACGAGC
* *
89915785 TTCTGTTTAGCTCTTTCGAGC
1 TTCTATTTAGCTCTTACGAGC
* * *
89915806 TTCTGTTCAGCTTTTACGAGC
1 TTCTATTTAGCTCTTACGAGC
* * *
89915827 TTCTATTCAACTCTTATGAG-
1 TTCTATTTAGCTCTTACGAGC
89915847 TT-TATGTTCAGCTCTTACGAGC
1 TTCTAT-TT-AGCTCTTACGAGC
89915869 TTCTATTTAGCT-TT-CGAGC
1 TTCTATTTAGCTCTTACGAGC
89915888 TT
1 TT
89915890 ATGTTGGCTC
Statistics
Matches: 88, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
19 10 0.11
20 5 0.06
21 66 0.75
22 4 0.05
23 3 0.03
ACGTcount: A:0.17, C:0.22, G:0.15, T:0.46
Consensus pattern (21 bp):
TTCTATTTAGCTCTTACGAGC
Found at i:89915860 original size:63 final size:61
Alignment explanation
Indices: 89915764--89915889 Score: 153
Period size: 63 Copynumber: 2.0 Consensus size: 61
89915754 GTGTTTTACT
* * * * * *
89915764 TTCTATTTATCTCTTACGAGCTTCTGTTTAGCTCTTTCGAGCTTCTGTTCAGCTTTTACGAGC
1 TTCTATTCAACTCTTACGAGCTTATGTTCAGCTCTTACGAGCTTCTATTCAGC-TTT-CGAGC
* * *
89915827 TTCTATTCAACTCTTATGAGTTTATGTTCAGCTCTTACGAGCTTCTATTTAGCTTTCGAGC
1 TTCTATTCAACTCTTACGAGCTTATGTTCAGCTCTTACGAGCTTCTATTCAGCTTTCGAGC
89915888 TT
1 TT
89915890 ATGTTGGCTC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
61 7 0.13
62 3 0.06
63 44 0.81
ACGTcount: A:0.17, C:0.22, G:0.15, T:0.46
Consensus pattern (61 bp):
TTCTATTCAACTCTTACGAGCTTATGTTCAGCTCTTACGAGCTTCTATTCAGCTTTCGAGC
Found at i:89916772 original size:30 final size:30
Alignment explanation
Indices: 89916702--89916761 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
89916692 GCATGTGCCT
89916702 CAGCCGTGTGTGACACACGGCCAAGTGGCA
1 CAGCCGTGTGTGACACACGGCCAAGTGGCA
*
89916732 CAGCCGTGTGTGACACATGGCCAAGTGGCA
1 CAGCCGTGTGTGACACACGGCCAAGTGGCA
89916762 TGACCGTGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.23, C:0.28, G:0.33, T:0.15
Consensus pattern (30 bp):
CAGCCGTGTGTGACACACGGCCAAGTGGCA
Found at i:89924687 original size:47 final size:47
Alignment explanation
Indices: 89924624--89925161 Score: 860
Period size: 47 Copynumber: 11.4 Consensus size: 47
89924614 CCCTTCGGGA
* *
89924624 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
89924671 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACAT-TG--GCCATTCGGC
*
89924721 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
89924768 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
89924815 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
89924862 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
89924909 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
89924956 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
89925003 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
89925050 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
89925097 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
89925144 CTTATCACATATACACAC
1 CTTATCACATATATACAC
89925162 CTTGTACACC
Statistics
Matches: 459, Mismatches: 29, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
47 415 0.90
48 1 0.00
49 1 0.00
50 42 0.09
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:89924777 original size:22 final size:22
Alignment explanation
Indices: 89924749--89924824 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
89924739 TTTCACATTC
89924749 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
89924771 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
89924795 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
89924818 ATCACAT
1 ATCACAT
89924825 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:89924965 original size:22 final size:22
Alignment explanation
Indices: 89924937--89925012 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
89924927 TTTCACATTC
89924937 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
89924959 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
89924983 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
89925006 ATCACAT
1 ATCACAT
89925013 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:89926671 original size:40 final size:40
Alignment explanation
Indices: 89926610--89926737 Score: 199
Period size: 40 Copynumber: 3.2 Consensus size: 40
89926600 TGTCACAAAT
89926610 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
89926649 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
89926689 ACCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
89926729 TCC-GGCTAA
1 TCCGGGCTAA
89926738 ACTCCGAAGG
Statistics
Matches: 83, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
39 19 0.23
40 64 0.77
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:89927013 original size:22 final size:21
Alignment explanation
Indices: 89926972--89927015 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
89926962 AAATGTGCAT
89926972 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
89926994 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
89927016 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:89932280 original size:16 final size:15
Alignment explanation
Indices: 89932259--89932306 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
89932249 GATGGGAATA
89932259 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
89932275 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
89932290 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
89932306 A
1 A
89932307 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:89932289 original size:8 final size:8
Alignment explanation
Indices: 89932255--89932306 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
89932245 CAATGATGGG
*
89932255 AATAATAA
1 AATATTAA
89932263 AATATATAA
1 AATAT-TAA
89932272 AATA-TAA
1 AATATTAA
89932279 AATATTAA
1 AATATTAA
*
89932287 AATATCAA
1 AATATTAA
*
89932295 AATATTAG
1 AATATTAA
89932303 AATA
1 AATA
89932307 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:89932306 original size:24 final size:24
Alignment explanation
Indices: 89932254--89932310 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
89932244 ACAATGATGG
*
89932254 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
89932278 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
89932302 GAATAATAA
1 GAATAATAA
89932311 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:89932519 original size:22 final size:24
Alignment explanation
Indices: 89932434--89932520 Score: 83
Period size: 25 Copynumber: 3.7 Consensus size: 24
89932424 TGTACATATA
* *
89932434 TAAAAATAAATACATGATAATA--T
1 TAAAAATATATACATAAT-ATAGGT
*
89932457 TAAAAATATGTACATAATATAGTGT
1 TAAAAATATATACATAATATAG-GT
*
89932482 TAAAAATACATACATAATATA-GT
1 TAAAAATATATACATAATATAGGT
*
89932505 T-AAGATATATACATAA
1 TAAAAATATATACATAA
89932521 GATAACATAT
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 18 0.33
25 20 0.37
ACGTcount: A:0.55, C:0.06, G:0.07, T:0.32
Consensus pattern (24 bp):
TAAAAATATATACATAATATAGGT
Found at i:89932579 original size:14 final size:13
Alignment explanation
Indices: 89932539--89932591 Score: 56
Period size: 14 Copynumber: 4.1 Consensus size: 13
89932529 ATAGAAAAAA
89932539 AAAATATATAAAT
1 AAAATATATAAAT
* *
89932552 AATATA-AT-ATT
1 AAAATATATAAAT
89932563 AAAGATATATAAAT
1 AAA-ATATATAAAT
89932577 AAAATAGTATAAAT
1 AAAATA-TATAAAT
89932591 A
1 A
89932592 TATATATACG
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
11 4 0.12
12 5 0.16
13 10 0.31
14 13 0.41
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (13 bp):
AAAATATATAAAT
Found at i:89934231 original size:72 final size:72
Alignment explanation
Indices: 89934077--89934328 Score: 391
Period size: 72 Copynumber: 3.5 Consensus size: 72
89934067 ACATGTGAAC
* * *
89934077 TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTTTTTTGACAACAAAAATTGAAATTACCT
1 TGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
* *
89934141 CAGCGTGTCC
63 CAACGTGTCT
89934151 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAA-TACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCA
89934215 ACGTGTCT
65 ACGTGTCT
89934223 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
*
89934288 TGTGTCT
66 CGTGTCT
*
89934295 TGAGGCTCAACTCATTTCTCGCAATGTGAGTTGA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
89934329 TTCTTTCAAA
Statistics
Matches: 168, Mismatches: 7, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
71 12 0.07
72 112 0.67
73 14 0.08
74 30 0.18
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Consensus pattern (72 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
CGTGTCT
Found at i:89934413 original size:88 final size:87
Alignment explanation
Indices: 89934261--89934506 Score: 280
Period size: 88 Copynumber: 2.8 Consensus size: 87
89934251 AGTTGAATTT
* * * ** *
89934261 TGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATGTGAGT
1 TGAAAACAGAAATTGAAAATACCTCGATGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
89934326 TGA-TTCTTTCAAAAACATAATAA
66 TGATTTCTTTCAAAAACA-AA-AA
* *
89934349 TGAAAACAGAAATGGAAAATACCTCGATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCGATGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
89934414 TGATTTTTTTGAGAAACAGAAA
66 TGATTTCTTTCAAAAACAAAAA
* ** *
89934436 TCAAAAGGC-TTAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TGAAAA--CAGAAATTGAAAATACCTC-G-ATGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
89934500 GAGTTGA
62 GAGTTGA
89934507 AATTAAAATA
Statistics
Matches: 135, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
87 7 0.05
88 75 0.56
89 13 0.10
90 40 0.30
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (87 bp):
TGAAAACAGAAATTGAAAATACCTCGATGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTCTTTCAAAAACAAAAA
Found at i:89934879 original size:75 final size:74
Alignment explanation
Indices: 89934505--89934870 Score: 434
Period size: 77 Copynumber: 4.9 Consensus size: 74
89934495 AATATGAGTT
* * * *
89934505 GAAATT-AAAATACCACAGTGTGTAATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAGTT
1 GAAATTGAAAATACCTCAGCGTGT-CT-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
89934569 TTTTTTAAAACA
63 TTTTTTAAAACA
* * *
89934581 GAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATAAGTTGATT
1 GAAATTGAAAATACCTCAGC--GTG-TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
*
89934645 TTTTTTTTGAAAACG
61 TTTTTTTT-AAAACA
* ** * *
89934660 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA--ATT
1 GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
89934723 TTGAAAACA
66 TTTAAAACA
* * **
89934732 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
89934797 TTTAACAACA
66 TTTAA-AACA
* *
89934807 GAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
89934871 GAAAAACAAA
Statistics
Matches: 253, Mismatches: 27, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
72 61 0.24
73 4 0.02
74 6 0.02
75 64 0.25
76 7 0.03
77 76 0.30
78 8 0.03
79 27 0.11
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (74 bp):
GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTTAAAACA
Found at i:89935038 original size:71 final size:70
Alignment explanation
Indices: 89934888--89935063 Score: 203
Period size: 71 Copynumber: 2.5 Consensus size: 70
89934878 AAAAATTAAA
* * * * * * **
89934888 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACATCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACATCAACGTG
89934952 CCCCG
66 CCCCG
* *
89934957 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAAAAAAAACTAAAAATACATCAACGT
* **
89935022 GTCTTG
65 GCCCCG
89935028 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
89935064 CCTTAGAAAG
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 26 0.29
70 6 0.07
71 59 0.65
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACATCAACGTG
CCCCG
Found at i:89946922 original size:16 final size:15
Alignment explanation
Indices: 89946901--89946948 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
89946891 TGATGGAATA
89946901 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
89946917 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
89946932 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
89946948 A
1 A
89946949 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:89946931 original size:8 final size:8
Alignment explanation
Indices: 89946897--89946948 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
89946887 ACAATGATGG
*
89946897 AATAATAA
1 AATATTAA
89946905 AATATATAA
1 AATAT-TAA
89946914 AATA-TAA
1 AATATTAA
89946921 AATATTAA
1 AATATTAA
*
89946929 AATATCAA
1 AATATTAA
*
89946937 AATATTAG
1 AATATTAA
89946945 AATA
1 AATA
89946949 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:89946948 original size:24 final size:24
Alignment explanation
Indices: 89946896--89946952 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
89946886 AACAATGATG
*
89946896 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
89946920 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
89946944 GAATAATAA
1 GAATAATAA
89946953 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:89947108 original size:22 final size:18
Alignment explanation
Indices: 89947059--89947115 Score: 51
Period size: 22 Copynumber: 2.9 Consensus size: 18
89947049 ATACTACATC
89947059 AATATGTACATATATAAA
1 AATATGTACATATATAAA
**
89947077 AATAAATACATGATAATATTAA
1 AATATGTACAT-AT-ATA--AA
89947099 AATATGTACATAATATA
1 AATATGTACAT-ATATA
89947116 GTGTTAAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
18 9 0.30
19 2 0.07
20 3 0.10
21 3 0.10
22 13 0.43
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.33
Consensus pattern (18 bp):
AATATGTACATATATAAA
Found at i:89947208 original size:25 final size:25
Alignment explanation
Indices: 89947180--89947311 Score: 98
Period size: 25 Copynumber: 5.6 Consensus size: 25
89947170 GAAAAAATAT
89947180 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
89947205 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
** * *
89947230 ATATATACGTAATATAAAATTTAA-
1 ATATATAAATAATATAATATTAAAG
** *
89947254 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
89947276 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
89947299 AAATAT-AATAATA
1 ATATATAAATAATA
89947312 ACAAAAAAAA
Statistics
Matches: 84, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
21 3 0.04
22 13 0.15
23 24 0.29
24 6 0.07
25 38 0.45
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:89947293 original size:50 final size:50
Alignment explanation
Indices: 89947172--89947294 Score: 124
Period size: 50 Copynumber: 2.4 Consensus size: 50
89947162 AACATGTAGA
*
89947172 AAAAATATATATATAAATAATATAATATTAAAGATATATAAATAAAATAGT
1 AAAAA-ATATATATAAATAATATAAAATTAAAGATATATAAATAAAATAGT
* ** * ** * *
89947223 ATAAAATATATATACGTAATATAAAATTTAA-A-ATATACCTAATATATT
1 AAAAAATATATATAAATAATATAAAATTAAAGATATATAAATAAAATAGT
89947271 AAAAGAATATATATAATATAATAT
1 AAAA-AATATATATAA-ATAATAT
89947295 TAAGAAATAT
Statistics
Matches: 58, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
48 15 0.26
49 11 0.19
50 28 0.48
51 4 0.07
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.35
Consensus pattern (50 bp):
AAAAAATATATATAAATAATATAAAATTAAAGATATATAAATAAAATAGT
Found at i:89951082 original size:40 final size:40
Alignment explanation
Indices: 89950980--89951146 Score: 234
Period size: 40 Copynumber: 4.2 Consensus size: 40
89950970 GGATTGATAA
* * *
89950980 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATA-T
89951020 CCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
* *
89951059 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
*
89951099 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATAT
89951139 CC-GGCTAA
1 CCGGGCTAA
89951147 ACTCCGAAGG
Statistics
Matches: 116, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
39 42 0.36
40 74 0.64
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
Found at i:89951145 original size:79 final size:79
Alignment explanation
Indices: 89950980--89951146 Score: 250
Period size: 79 Copynumber: 2.1 Consensus size: 79
89950970 GGATTGATAA
* *
89950980 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGA
89951045 GCGAGTTACTATAT
66 GCGAGTTACTATAT
*
89951059 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGCATTT
*
89951123 GAGCTAG-TAGCTATAT
64 GAGCGAGTTA-CTATAT
89951139 CC-GGCTAA
1 CCGGGCTAA
89951147 ACTCCGAAGG
Statistics
Matches: 81, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
78 2 0.02
79 52 0.64
80 27 0.33
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGA
GCGAGTTACTATAT
Found at i:89951422 original size:22 final size:21
Alignment explanation
Indices: 89951381--89951424 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
89951371 GAATGTGCAT
89951381 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
89951403 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
89951425 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:89961306 original size:27 final size:27
Alignment explanation
Indices: 89961259--89961335 Score: 66
Period size: 27 Copynumber: 2.9 Consensus size: 27
89961249 GGGCAAAACA
* *
89961259 GTCATTTTAC-CTTATAGGGGTATGTCG
1 GTCATTTTACAC-TACAAGGGTATGTCG
*
89961286 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTTTACACTACAAGGGTATGTCG
* * * * *
89961313 ATAATTGTACACTAGAAAGGTAT
1 GTCATTTTACACTACAAGGGTAT
89961336 TTCAATAATT
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
27 40 0.98
28 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTCG
Found at i:89961336 original size:27 final size:27
Alignment explanation
Indices: 89961293--89961350 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
89961283 TCGGTCATTT
* *
89961293 TACACTACAAGGGTATTTCGATAATTG
1 TACACTACAAAGGTATTTCAATAATTG
* *
89961320 TACACTAGAAAGGTATTTCAATAATTT
1 TACACTACAAAGGTATTTCAATAATTG
89961347 TACA
1 TACA
89961351 AATCGGGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (27 bp):
TACACTACAAAGGTATTTCAATAATTG
Found at i:89961371 original size:27 final size:27
Alignment explanation
Indices: 89961331--89961697 Score: 421
Period size: 27 Copynumber: 13.6 Consensus size: 27
89961321 ACACTAGAAA
** *
89961331 GGTATTTCAATAATTTTACAAATCGGG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
89961358 GGTGTTTTGGTAATTTTACAAATCGAT
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
89961385 GGTATTTCGATAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
89961412 GGTATCTCGGTAGTTCTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
*
89961439 GGTATTTCAGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
89961466 GGTGTTTCGGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
89961493 GGTGTTTCGATAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * * * *
89961520 GGTGTTTCGATAATTTCACATATCGGG
1 GGTATTTCGGTAATTTTACAAATCGAG
*
89961547 GGTATTGCGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
89961574 GGTATTTCAGTAATTTTACAAACCGGG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * * *
89961601 GGTACTTCGATAATTTTACAAATTGGG
1 GGTATTTCGGTAATTTTACAAATCGAG
*
89961628 GGTATTTCGATAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
89961655 GGTACTTCGATAATTTTACAAA-CTGGG
1 GGTATTTCGGTAATTTTACAAATC-GAG
89961682 GGTATTTCGGTAATTT
1 GGTATTTCGGTAATTT
89961698 CTCTTGATTA
Statistics
Matches: 289, Mismatches: 50, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
26 1 0.00
27 288 1.00
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.37
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATCGAG
Found at i:89961397 original size:81 final size:81
Alignment explanation
Indices: 89961275--89961697 Score: 449
Period size: 81 Copynumber: 5.2 Consensus size: 81
89961265 TTACCTTATA
* * * * * * * *
89961275 GGGGTATGTCGGTCATTTTAC-ACTACAAGGGTATTTCGATAATTGTAC-ACTAGAAAGGTATTT
1 GGGGTATTTCGGTAATTTTACAAAT-CGAGGGTATTTCGATAATTTTACAAATCG-AGGGTATTT
*
89961338 CAATAATTTTACAAATCG
64 CGATAATTTTACAAATCG
* * * * *
89961356 GGGGTGTTTTGGTAATTTTACAAATCGATGGTATTTCGATAATTTTACAAATTGAGGGTATCTCG
1 GGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCG
* * *
89961421 GTAGTTCTACAAATCG
66 ATAATTTTACAAATCG
* * * * * *
89961437 AGGGTATTTCAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATTGAGGGTGTTTCG
1 GGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCG
89961502 ATAATTTTACAAATCG
66 ATAATTTTACAAATCG
* * * * * * * *
89961518 AGGGTGTTTCGATAATTTCACATATCGGGGGTATTGCGGTAATTTTACAAATCGAGGGTATTTC-
1 GGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCG
*
89961582 AGTAATTTTACAAACCG
66 A-TAATTTTACAAATCG
* * * * *
89961599 GGGGTACTTCGATAATTTTACAAATTGGGGGTATTTCGATAATTTTACAAATCGAGGGTACTTCG
1 GGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCG
89961664 ATAATTTTACAAA-CTG
66 ATAATTTTACAAATC-G
89961680 GGGGTATTTCGGTAATTT
1 GGGGTATTTCGGTAATTT
89961698 CTCTTGATTA
Statistics
Matches: 287, Mismatches: 50, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
80 2 0.01
81 279 0.97
82 6 0.02
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (81 bp):
GGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCG
ATAATTTTACAAATCG
Done.