Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 275 of 325
Found at i:89962062 original size:28 final size:28
Alignment explanation
Indices: 89962014--89962101 Score: 151
Period size: 28 Copynumber: 3.2 Consensus size: 28
89962004 TGGCCCCTTT
* *
89962014 AGGCCCAATCTCGTTCA-ATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
89962041 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
89962069 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
89962097 AGGCC
1 AGGCC
89962102 GAACTACTTC
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
27 15 0.26
28 43 0.74
ACGTcount: A:0.26, C:0.36, G:0.17, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:89978284 original size:12 final size:12
Alignment explanation
Indices: 89978267--89978293 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
89978257 AAAAATCACT
89978267 TTGTAAAAGTTG
1 TTGTAAAAGTTG
89978279 TTGTAAAAGTTG
1 TTGTAAAAGTTG
89978291 TTG
1 TTG
89978294 ATCTATCAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.44
Consensus pattern (12 bp):
TTGTAAAAGTTG
Found at i:89982310 original size:37 final size:37
Alignment explanation
Indices: 89982260--89982336 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
89982250 GAATGGAAGA
89982260 AAGAGAAAACTTAATTGGCCAAAATAGGTAAGTATTC
1 AAGAGAAAACTTAATTGGCCAAAATAGGTAAGTATTC
89982297 AAGAGAAAACTTAATTGGCCAAAATAGGTAAGTATTC
1 AAGAGAAAACTTAATTGGCCAAAATAGGTAAGTATTC
89982334 AAG
1 AAG
89982337 TCCCATTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.47, C:0.10, G:0.19, T:0.23
Consensus pattern (37 bp):
AAGAGAAAACTTAATTGGCCAAAATAGGTAAGTATTC
Found at i:89983353 original size:24 final size:24
Alignment explanation
Indices: 89983326--89983382 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
89983316 CTATCCGAAG
*
89983326 CTTCCTGATATGGTTCTTTGTGAA
1 CTTCCTGATATGATTCTTTGTGAA
*
89983350 CTTCTTGATATGATTCTTTGTGAA
1 CTTCCTGATATGATTCTTTGTGAA
89983374 CTTCCTGAT
1 CTTCCTGAT
89983383 TACAGCTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.47
Consensus pattern (24 bp):
CTTCCTGATATGATTCTTTGTGAA
Found at i:89984289 original size:23 final size:23
Alignment explanation
Indices: 89984263--89984307 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
89984253 TTATATCCAT
* *
89984263 ACCAAAATCATGCCAAATCATAA
1 ACCAAAATCATACCAAAACATAA
89984286 ACCAAAATCATACCAAAACATA
1 ACCAAAATCATACCAAAACATA
89984308 TGTTTCATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.56, C:0.27, G:0.02, T:0.16
Consensus pattern (23 bp):
ACCAAAATCATACCAAAACATAA
Found at i:89984302 original size:11 final size:11
Alignment explanation
Indices: 89984260--89984307 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
89984250 TGCTTATATC
89984260 CATACCAAAAT
1 CATACCAAAAT
*
89984271 CATGCC-AAAT
1 CATACCAAAAT
89984281 CATAAACCAAAAT
1 CAT--ACCAAAAT
89984294 CATACCAAAA-
1 CATACCAAAAT
89984304 CATA
1 CATA
89984308 TGTTTCATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
10 11 0.34
11 12 0.38
12 2 0.06
13 7 0.22
ACGTcount: A:0.54, C:0.27, G:0.02, T:0.17
Consensus pattern (11 bp):
CATACCAAAAT
Found at i:89986619 original size:27 final size:27
Alignment explanation
Indices: 89986588--89986974 Score: 497
Period size: 27 Copynumber: 14.4 Consensus size: 27
89986578 CCTAAAAGTA
*
89986588 GTAAAATGACCATAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* * *
89986615 ATAAAATGACCATAATGCCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
89986642 GTAAAATGACCGTAATGCCCTTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
89986669 GTAAAATAACCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
89986696 GTAAAATGACCGTAATACCCTTATAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
89986723 GTAAAATGACTGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
89986750 GTAAAATGACCGTAATACCCCTGTAAG
1 GTAAAATGACCGTAATACCCCTGTAGG
* ** * *
89986777 GTAAAATAACTATAATGCCCCTATAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
89986804 GTAAAATGATCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
89986831 GTAAAATGACCGTAACACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* * *
89986858 GTAAAATGACCGTAATGCCCCTATGGG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
89986885 GTAAAATGATCGTAATA-CCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* * *
89986911 GTAAAATGACTGTAATGCCCCTATAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* * *
89986938 GTAAAATGACAGTAATACCCCTATATG
1 GTAAAATGACCGTAATACCCCTGTAGG
89986965 GTAAAATGAC
1 GTAAAATGAC
89986975 GATTATGCCC
Statistics
Matches: 312, Mismatches: 47, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 21 0.07
27 291 0.93
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:89986723 original size:81 final size:81
Alignment explanation
Indices: 89986588--89986974 Score: 551
Period size: 81 Copynumber: 4.8 Consensus size: 81
89986578 CCTAAAAGTA
* * * *
89986588 GTAAAATGACCATAATACCCCTGTAGGATAAAATGACCATAATGCCCCTGTAGGGTAAAATGACC
1 GTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACC
*
89986653 GTAATGCCCTTGTAGG
66 GTAATGCCCCTGTAGG
* * * *
89986669 GTAAAATAACCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCTTATAGGGTAAAATGACT
1 GTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACC
89986734 GTAATGCCCCTGTAGG
66 GTAATGCCCCTGTAGG
* * ** *
89986750 GTAAAATGACCGTAATACCCCTGTAAGGTAAAATAACTATAATGCCCCTATAGGGTAAAATGATC
1 GTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACC
89986815 GTAATGCCCCTGTAGG
66 GTAATGCCCCTGTAGG
* * *
89986831 GTAAAATGACCGTAACACCCCTGTAGGGTAAAATGACCGTAATGCCCCTATGGGGTAAAATGATC
1 GTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACC
*
89986896 GTAAT-ACCCTGTAGG
66 GTAATGCCCCTGTAGG
* * * * * *
89986911 GTAAAATGACTGTAATGCCCCTATAGGGTAAAATGACAGTAATACCCCTATATGGTAAAATGAC
1 GTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGAC
89986975 GATTATGCCC
Statistics
Matches: 272, Mismatches: 34, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
80 64 0.24
81 208 0.76
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (81 bp):
GTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACC
GTAATGCCCCTGTAGG
Found at i:89987145 original size:27 final size:26
Alignment explanation
Indices: 89987115--89987201 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
89987105 GGAAGTACTA
* *
89987115 TACTGGTGACTATGTCACATTCACTGT
1 TACTGGTGGCTATGCCACATT-ACTGT
* *
89987142 TACTGGTGGCTATGCCATAATTACTGA
1 TACTGGTGGCTATGCCA-CATTACTGT
*
89987169 TACTGGTGGCTTTGCCACATTTACTGT
1 TACTGGTGGCTATGCCACA-TTACTGT
*
89987196 TTCTGG
1 TACTGG
89987202 CAACTATGCT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.02
27 46 0.92
28 3 0.06
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.38
Consensus pattern (26 bp):
TACTGGTGGCTATGCCACATTACTGT
Found at i:89996387 original size:50 final size:50
Alignment explanation
Indices: 89996217--89996607 Score: 378
Period size: 50 Copynumber: 7.8 Consensus size: 50
89996207 TGAGAACACA
* * * *** *
89996217 TGTGTAATACTATGTGCAGGCTACTATGTGTTTAAGATTGTTTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TG-ATTAGGTCACG
* * *
89996269 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGAT-AGTTAAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGA-TT-AGGTCACG
*
89996320 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTAGGTCACG
* * * * * * *
89996370 TTTTTAGTACTAAGTGCATGCTACTACGTGTACCAAAT-AGTTAGGCCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGA-TTAGGTCACG
* * * ** *
89996420 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGA-TT-AGGTCACG
* * * *
89996471 TGTGTAGTACTAAGTGCAGGCTATTATGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTAGGTCACG
* * *
89996521 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTG-TT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGATTAGGTCACG
* *
89996570 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
89996608 AGCTTTGGTT
Statistics
Matches: 279, Mismatches: 52, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
48 1 0.00
49 41 0.15
50 120 0.43
51 85 0.30
52 32 0.11
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTAGGTCACG
Found at i:89996393 original size:101 final size:101
Alignment explanation
Indices: 89996215--89996609 Score: 440
Period size: 101 Copynumber: 3.9 Consensus size: 101
89996205 TGTGAGAACA
* * * *** *
89996215 CATGTGTAATACTATGTGCAGGCTACTATGTGTTTAAGATTGTTTTAGGTCACGTGTGTAGTACT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-ATTAGGTCACGTGTGTAGTACT
*
89996280 AAGTGTAGGCTACTACGTGTACCAGATAGTTAAGGTCG
65 AAGTGCAGGCTACTACGTGTACCAGATAGTT-AGGTCG
* * *
89996318 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGATTAGGTCACGTTTTTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATTAGGTCACGTGTGTAGTACTA
* * *
89996382 AGTGCATGCTACTACGTGTACCAAATAGTTAGGCCG
66 AGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCG
* * * ** *
89996418 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGA-CAACTTCA-ATCACGTGTGTAGTAC
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA-TT-AGGTCACGTGTGTAGTAC
* * * * *
89996481 TAAGTGCAGGCTATTATGTGTATCAGATGGTTAGGTCA
64 TAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCG
* * * *
89996519 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTG-TT-GGTCGCATGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATTAGGTCACGTGTGTAGTACTA
* *
89996582 AGTGCAGGCTACTATGTGTATCAGATAG
66 AGTGCAGGCTACTACGTGTACCAGATAG
89996610 CTTTGGTTAC
Statistics
Matches: 248, Mismatches: 40, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
99 41 0.17
100 43 0.17
101 127 0.51
102 3 0.01
103 34 0.14
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (101 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATTAGGTCACGTGTGTAGTACTA
AGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCG
Found at i:89996533 original size:151 final size:150
Alignment explanation
Indices: 89996320--89996597 Score: 457
Period size: 151 Copynumber: 1.8 Consensus size: 150
89996310 TAAGGTCGCA
* *
89996320 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATTAGGTCACGTTTTTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATTAGGTCACGTGTGTAGTACTAAGT
*
89996385 GCATGCTACTACGTGTACCAAATAGTTAGGCCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
66 GCAGGCTACTACGTGTACCAAATAGTT-GGCCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
89996450 TACCCGACAACTTCAATCACG
130 TACCCGACAACTTCAATCACG
* * *
89996471 TGTGTAGTACTAAGTGCAGGCTATTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATTAGGTCACGTGTGTAGTACTAAGT
** * *
89996536 GCAGGCTACTACGTGTACCGGATTGTTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
66 GCAGGCTACTACGTGTACCAAATAGTTGGCCGCATGTGTAGTACTAAGTGCAGGCTACTATG
89996598 TGTATCAGAT
Statistics
Matches: 117, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
150 34 0.29
151 83 0.71
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (150 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATTAGGTCACGTGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCAAATAGTTGGCCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGT
ACCCGACAACTTCAATCACG
Found at i:89996827 original size:16 final size:15
Alignment explanation
Indices: 89996806--89996836 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
89996796 GGAATGGAGT
89996806 AAGTGAAATTATGTAA
1 AAGTGAAATT-TGTAA
89996822 AAGTGAAATTTGTAA
1 AAGTGAAATTTGTAA
89996837 TAGAACAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.32
Consensus pattern (15 bp):
AAGTGAAATTTGTAA
Found at i:90003583 original size:18 final size:18
Alignment explanation
Indices: 90003562--90003612 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
90003552 ACAATTCTTT
90003562 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCTCC
* *
90003580 TCTCTTCATCTATTTCTTC
1 TCTCTTCTTCT-TTTCTCC
90003599 T-TCTTCTTCTTTTC
1 TCTCTTCTTCTTTTC
90003613 CTCTATAGCC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 4 0.14
18 18 0.62
19 7 0.24
ACGTcount: A:0.04, C:0.33, G:0.00, T:0.63
Consensus pattern (18 bp):
TCTCTTCTTCTTTTCTCC
Found at i:90004878 original size:28 final size:28
Alignment explanation
Indices: 90004838--90004953 Score: 155
Period size: 28 Copynumber: 4.2 Consensus size: 28
90004828 GGAGGAAGCG
90004838 TTCTGGTGGCTCTACCACAAATATCTGT
1 TTCTGGTGGCTCTACCACAAATATCTGT
*
90004866 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTACCACAAATATCTGT
* * *
90004894 TTCTGGTGGCCCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTACCACAAATATCTGT
* * *
90004922 ATCTGGTGACTCTATCAC-AATATCTG-
1 TTCTGGTGGCTCTACCACAAATATCTGT
90004948 TTCTGG
1 TTCTGG
90004954 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 5 0.06
27 7 0.09
28 66 0.85
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTCTACCACAAATATCTGT
Found at i:90007347 original size:27 final size:27
Alignment explanation
Indices: 90007280--90007347 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
90007270 TTTCGCAATT
* *
90007280 CATCTCACAGCTT-GCCACTTGTGGAGA
1 CATCTCACA-CTTCACCACTAGTGGAGA
* * *
90007307 CTTCTCGCAGTTCACCACTAGTGGAGA
1 CATCTCACACTTCACCACTAGTGGAGA
90007334 CATCTCACACTTCA
1 CATCTCACACTTCA
90007348 TGTGTTTGTG
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
26 2 0.06
27 30 0.94
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (27 bp):
CATCTCACACTTCACCACTAGTGGAGA
Found at i:90007911 original size:21 final size:21
Alignment explanation
Indices: 90007881--90007930 Score: 91
Period size: 21 Copynumber: 2.3 Consensus size: 21
90007871 ATTCAAGTTA
90007881 AAAATCATTTTCACCATTATAT
1 AAAA-CATTTTCACCATTATAT
90007903 AAAACATTTTCACCATTATAT
1 AAAACATTTTCACCATTATAT
90007924 AAAACAT
1 AAAACAT
90007931 CCTTAAGCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 24 0.86
22 4 0.14
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (21 bp):
AAAACATTTTCACCATTATAT
Found at i:90009054 original size:29 final size:30
Alignment explanation
Indices: 90008995--90009052 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
90008985 TCCGAGCCTT
*
90008995 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
90009025 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
90009053 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:90009282 original size:13 final size:13
Alignment explanation
Indices: 90009264--90009295 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
90009254 TTTCCAGCAA
90009264 TTATGAATTTATT
1 TTATGAATTTATT
90009277 TTATGAATTTATT
1 TTATGAATTTATT
*
90009290 TGATGA
1 TTATGA
90009296 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:90009503 original size:50 final size:50
Alignment explanation
Indices: 90009390--90009631 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
90009380 ATTTGGGTAA
* * *
90009390 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
90009446 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
90009496 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
90009546 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
90009596 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
90009632 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:90009579 original size:100 final size:103
Alignment explanation
Indices: 90009390--90009639 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
90009380 ATTTGGGTAA
90009390 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
90009455 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
90009496 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
90009558 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
90009596 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
90009640 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:90016646 original size:29 final size:29
Alignment explanation
Indices: 90016588--90016644 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
90016578 TTCGAGCCTT
*
90016588 GGGGAAAAATGTAATTATGTAAAAGTTTA
1 GGGGAAAAATGTAATTATGAAAAAGTTTA
* *
90016617 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGG-AAAAATGTAATTATGAAAAAGTT
90016645 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.42, C:0.02, G:0.25, T:0.32
Consensus pattern (29 bp):
GGGGAAAAATGTAATTATGAAAAAGTTTA
Found at i:90016874 original size:13 final size:13
Alignment explanation
Indices: 90016856--90016887 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
90016846 TTTCCAGCAA
90016856 TTATGAATTTATT
1 TTATGAATTTATT
90016869 TTATGAATTTATT
1 TTATGAATTTATT
*
90016882 TGATGA
1 TTATGA
90016888 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:90017095 original size:50 final size:50
Alignment explanation
Indices: 90016982--90017223 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
90016972 ATTTGGGTAA
* * *
90016982 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
90017038 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
90017088 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
90017138 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
90017188 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
90017224 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:90017171 original size:100 final size:103
Alignment explanation
Indices: 90016982--90017231 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
90016972 ATTTGGGTAA
90016982 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
90017047 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
90017088 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
90017150 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
90017188 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
90017232 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:90024734 original size:50 final size:50
Alignment explanation
Indices: 90024522--90024752 Score: 229
Period size: 49 Copynumber: 4.6 Consensus size: 50
90024512 GTAAAGAGAT
* * *
90024522 CCATGCAAGA-CATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--GAGAGGTC
* *
90024577 CCCTGTAAGACCATGTCTGGGACAT-GCATGGGCACCGAGGCGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACGAGAGGTC
* * *
90024626 CCATGTAAGACCATGTCT-GGACATGGCGTTGGCACCGAGATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACGAGAGGTC
* * * * **
90024675 CCCTATAAGACCATGTCTTGGACATGGCATGGGCACC-ATCACGAGAACAT-
1 CCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACGAG-AGGTC
90024725 CCATGTAAGACCATGTCTGGGACATGGC
1 CCATGTAAGACCATGTCTGGGACATGGC
90024753 TTTGGCATGT
Statistics
Matches: 150, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
48 6 0.04
49 62 0.41
50 45 0.30
51 3 0.02
52 2 0.01
54 2 0.01
55 16 0.11
56 14 0.09
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.20
Consensus pattern (50 bp):
CCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACGAGAGGTC
Found at i:90024742 original size:99 final size:99
Alignment explanation
Indices: 90024522--90024759 Score: 277
Period size: 99 Copynumber: 2.4 Consensus size: 99
90024512 GTAAAGAGAT
* * * *
90024522 CCATGCAAGA-CATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCCCTGTAAG
1 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC----GA-GATGAGAGGTCCCCTATAAG
** **
90024586 ACCATGTCTGGGACATGCATGGGCACCGAGGCGAGAGGTC
60 ACCATGTCTGGGACATGCATGGGCACCGACACGAGACATC
90024626 CCATGTAAGACCATGTCT-GGACATGGCGTTGGCACCGAGATGAGAGGTCCCCTATAAGACCATG
1 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCTATAAGACCATG
*
90024690 TCTTGGACATGGCATGGGCACC-ATCACGAGAACAT-
66 TCTGGGACAT-GCATGGGCACCGA-CACGAG-ACATC
*
90024725 CCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
90024760 TGTTATTATC
Statistics
Matches: 119, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
98 34 0.29
99 35 0.29
100 17 0.14
103 2 0.02
104 24 0.20
105 7 0.06
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (99 bp):
CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCTATAAGACCATG
TCTGGGACATGCATGGGCACCGACACGAGACATC
Found at i:90029381 original size:21 final size:21
Alignment explanation
Indices: 90029352--90029396 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
90029342 TAAACATAAT
*
90029352 AAATATACTTTTATA-GAGAA
1 AAATATACTTTTACATGAGAA
90029372 AAATAATACTTTTACATGAGAA
1 AAAT-ATACTTTTACATGAGAA
90029394 AAA
1 AAA
90029397 ATTTTAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.18
21 10 0.45
22 8 0.36
ACGTcount: A:0.53, C:0.07, G:0.09, T:0.31
Consensus pattern (21 bp):
AAATATACTTTTACATGAGAA
Found at i:90030061 original size:1 final size:1
Alignment explanation
Indices: 90030055--90030402 Score: 633
Period size: 1 Copynumber: 348.0 Consensus size: 1
90030045 TTAGTTAGCA
*
90030055 TTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
90030120 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
90030185 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * **
90030250 TTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTGGTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
90030315 TTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
90030380 TTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTT
90030403 CTTTCATCTA
Statistics
Matches: 335, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
1 335 1.00
ACGTcount: A:0.01, C:0.00, G:0.01, T:0.98
Consensus pattern (1 bp):
T
Found at i:90034358 original size:27 final size:27
Alignment explanation
Indices: 90034327--90034380 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
90034317 CATTTTCTTT
90034327 TCAACTGACTTTTGTAGTGGATTTTTA
1 TCAACTGACTTTTGTAGTGGATTTTTA
90034354 TCAACTGACTTTTGTAGTGGATTTTTA
1 TCAACTGACTTTTGTAGTGGATTTTTA
90034381 CTTCATCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.11, G:0.19, T:0.48
Consensus pattern (27 bp):
TCAACTGACTTTTGTAGTGGATTTTTA
Found at i:90035009 original size:9 final size:9
Alignment explanation
Indices: 90034997--90035087 Score: 50
Period size: 9 Copynumber: 10.2 Consensus size: 9
90034987 TTTAATTAAT
90034997 TTTTAAAAA
1 TTTTAAAAA
90035006 TTTTAAAAA
1 TTTTAAAAA
**
90035015 TTCAAAAAA
1 TTTTAAAAA
*
90035024 TTTT---AT
1 TTTTAAAAA
*
90035030 TTTTAGAAA
1 TTTTAAAAA
90035039 --TTAAAAA
1 TTTTAAAAA
*
90035046 TAATT-AAAA
1 T-TTTAAAAA
90035055 TTTTAAAAATTA
1 TTTT-AAAA--A
90035067 TTTTAAAAA
1 TTTTAAAAA
90035076 TTTTTAAAAA
1 -TTTTAAAAA
90035086 TT
1 TT
90035088 AATTAAATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 22
0.68 0.09 0.24
Matches are distributed among these distances:
6 5 0.08
7 6 0.10
8 2 0.03
9 27 0.43
10 14 0.22
11 4 0.06
12 5 0.08
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:90035071 original size:12 final size:12
Alignment explanation
Indices: 90035054--90035088 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
90035044 AATAATTAAA
90035054 ATTTTAAAAATT
1 ATTTTAAAAATT
90035066 ATTTTAAAAA-T
1 ATTTTAAAAATT
90035077 -TTTTAAAAATT
1 ATTTTAAAAATT
90035088 A
1 A
90035089 ATTAAATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 9 0.43
11 2 0.10
12 10 0.48
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
ATTTTAAAAATT
Found at i:90041667 original size:24 final size:25
Alignment explanation
Indices: 90041646--90041692 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
90041636 TGATCTTTCG
*
90041646 CCTTCCATCTT-CTTTAACCTTTAA
1 CCTTCCATCTTCCTTAAACCTTTAA
*
90041670 CCTTTCATCTTCCTTAAACCTTT
1 CCTTCCATCTTCCTTAAACCTTT
90041693 TATCTCTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.19, C:0.34, G:0.00, T:0.47
Consensus pattern (25 bp):
CCTTCCATCTTCCTTAAACCTTTAA
Found at i:90041689 original size:18 final size:18
Alignment explanation
Indices: 90041663--90041697 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
90041653 TCTTCTTTAA
*
90041663 CCTTTAACCTTTCATCTT
1 CCTTAAACCTTTCATCTT
*
90041681 CCTTAAACCTTTTATCT
1 CCTTAAACCTTTCATCT
90041698 CTTTGTAACC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.31, G:0.00, T:0.49
Consensus pattern (18 bp):
CCTTAAACCTTTCATCTT
Found at i:90042228 original size:42 final size:42
Alignment explanation
Indices: 90042169--90042252 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
90042159 TACAATAAAG
*
90042169 CCATTGTCGACATTCCAAACAATCTCTTTACGCATCTTATCT
1 CCATTGGCGACATTCCAAACAATCTCTTTACGCATCTTATCT
90042211 CCATTGGCGACATTCCAAACAATCTCTTTACGCATCTTATCT
1 CCATTGGCGACATTCCAAACAATCTCTTTACGCATCTTATCT
90042253 TATACTCTTG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.35
Consensus pattern (42 bp):
CCATTGGCGACATTCCAAACAATCTCTTTACGCATCTTATCT
Found at i:90049568 original size:28 final size:26
Alignment explanation
Indices: 90049493--90049569 Score: 66
Period size: 28 Copynumber: 2.7 Consensus size: 26
90049483 TCCAAAAATA
*
90049493 GCCACAGAGGCTTTCCTTTCAGAGTCTT
1 GCCACA-AGGC-TTCCTTTAAGAGTCTT
*
90049521 GCCACAAAGGCGTCCTTTTAACGAAGT-TT
1 GCCAC-AAGGCTTCC-TTTAA-G-AGTCTT
90049550 GCCACAAGGCATTCCTTTAA
1 GCCACAAGGC-TTCCTTTAA
90049570 TAGAGATGGC
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
27 3 0.07
28 23 0.56
29 12 0.29
30 3 0.07
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (26 bp):
GCCACAAGGCTTCCTTTAAGAGTCTT
Found at i:90049634 original size:29 final size:30
Alignment explanation
Indices: 90049565--90049644 Score: 92
Period size: 29 Copynumber: 2.7 Consensus size: 30
90049555 AAGGCATTCC
*
90049565 TTTAATAGAGATGGCCACAAA-AGCATCTT
1 TTTAATAGAGATGGCCACAAAGAGCATCAT
* * *
90049594 TTTGACAGAGATAGCCACAAAGA-CATCAT
1 TTTAATAGAGATGGCCACAAAGAGCATCAT
* *
90049623 TTTAATAAAGATGGCCCCAAAG
1 TTTAATAGAGATGGCCACAAAG
90049645 GGATTTATTT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 40 0.98
30 1 0.02
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (30 bp):
TTTAATAGAGATGGCCACAAAGAGCATCAT
Found at i:90049684 original size:29 final size:29
Alignment explanation
Indices: 90049652--90049715 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
90049642 AAGGGATTTA
*
90049652 TTTAACT-AAAAAATCTACAAAGACATTCG
1 TTTAACTGAAAAAA-CCACAAAGACATTCG
* *
90049681 TTTAACTGAGATAACCACAAAGACATTCG
1 TTTAACTGAAAAAACCACAAAGACATTCG
90049710 TTTAAC
1 TTTAAC
90049716 AGATATAGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 27 0.87
30 4 0.13
ACGTcount: A:0.44, C:0.19, G:0.09, T:0.28
Consensus pattern (29 bp):
TTTAACTGAAAAAACCACAAAGACATTCG
Found at i:90049736 original size:29 final size:29
Alignment explanation
Indices: 90049668--90049744 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
90049658 TAAAAAATCT
*
90049668 ACAAAGACATTCGTTTAACTGAGATAACC
1 ACAAAGACATTCGTTTAACAGAGATAACC
* *
90049697 ACAAAGACATTCGTTTAACAGATATAGCC
1 ACAAAGACATTCGTTTAACAGAGATAACC
* *
90049726 ATAAATG-CATTCATTTAAC
1 ACAAA-GACATTCGTTTAAC
90049745 TAAGATAGCC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
29 41 0.98
30 1 0.02
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (29 bp):
ACAAAGACATTCGTTTAACAGAGATAACC
Found at i:90049752 original size:29 final size:29
Alignment explanation
Indices: 90049675--90049763 Score: 92
Period size: 29 Copynumber: 3.1 Consensus size: 29
90049665 TCTACAAAGA
* *
90049675 CATTCGTTTAACTGAGATAACCACAAA-G
1 CATTCGTTTAACTAAGATAGCCACAAATG
* *
90049703 ACATTCGTTTAAC-AGATATAGCCATAAATG
1 -CATTCGTTTAACTA-AGATAGCCACAAATG
* *
90049733 CATTCATTTAACTAAGATAGCCGCAAATG
1 CATTCGTTTAACTAAGATAGCCACAAATG
90049762 CA
1 CA
90049764 GCCTTTTAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
29 47 0.96
30 2 0.04
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.27
Consensus pattern (29 bp):
CATTCGTTTAACTAAGATAGCCACAAATG
Found at i:90049825 original size:29 final size:29
Alignment explanation
Indices: 90049792--90049851 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
90049782 CCATAAAGGT
90049792 TTTCTTATAACAGAGATCGACACAAAAGC
1 TTTCTTATAACAGAGATCGACACAAAAGC
*
90049821 TTTCTTATAACAGAGATCGACACAAAGGC
1 TTTCTTATAACAGAGATCGACACAAAAGC
90049850 TT
1 TT
90049852 CCGTTCAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (29 bp):
TTTCTTATAACAGAGATCGACACAAAAGC
Found at i:90054548 original size:75 final size:75
Alignment explanation
Indices: 90054383--90054561 Score: 188
Period size: 75 Copynumber: 2.4 Consensus size: 75
90054373 GCAAAAGAGA
*
90054383 TTGCGCCCAGTGCTAGTCGGAT-TAACCT-ACAGTATTGAATGTGAGTCCAACTCTAGTTGGATA
1 TTGCGCCCAGTGCTAGTCGGATAT-A-CTGACAGTAATGAATGTGAGTCCAACTCTAGTTGGATA
90054446 AACCAACAATAT
64 AACCAACAATAT
* * *
90054458 TCT-CAG-CCAATGCTAGTCGGATATACTGAC-GATAATGATTGTGAGTCCAGCTCTAGTTGGAT
1 T-TGC-GCCCAGTGCTAGTCGGATATACTGACAG-TAATGAATGTGAGTCCAACTCTAGTTGGAT
* ** *
90054520 GAACCAACGGTGT
63 AAACCAACAATAT
* *
90054533 TTGCGCCCAGCGCTAGTCGGATAAACTGA
1 TTGCGCCCAGTGCTAGTCGGATATACTGA
90054562 GGATTGTGTG
Statistics
Matches: 86, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
74 5 0.06
75 78 0.91
76 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (75 bp):
TTGCGCCCAGTGCTAGTCGGATATACTGACAGTAATGAATGTGAGTCCAACTCTAGTTGGATAAA
CCAACAATAT
Found at i:90055083 original size:15 final size:15
Alignment explanation
Indices: 90055063--90055092 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
90055053 ATCAACATAT
90055063 AGAATTTGAGCTAAA
1 AGAATTTGAGCTAAA
*
90055078 AGAATTTGTGCTAAA
1 AGAATTTGAGCTAAA
90055093 TTCCTACTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.30
Consensus pattern (15 bp):
AGAATTTGAGCTAAA
Found at i:90057841 original size:3 final size:3
Alignment explanation
Indices: 90057835--90057867 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
90057825 GAAAACTGTT
90057835 TTA TTA TTA TTA TTA TTA TTA TTA TTA TCTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TT
90057868 TTAAGTATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:90057990 original size:24 final size:25
Alignment explanation
Indices: 90057963--90058010 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
90057953 TATTTATAGA
90057963 AAATTGCTTTATAATAT-TCATTTC
1 AAATTGCTTTATAATATATCATTTC
* *
90057987 AAATTGTTTTATTATATATCATTT
1 AAATTGCTTTATAATATATCATTT
90058011 TAAGTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.33, C:0.08, G:0.04, T:0.54
Consensus pattern (25 bp):
AAATTGCTTTATAATATATCATTTC
Found at i:90058021 original size:25 final size:24
Alignment explanation
Indices: 90057970--90058024 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
90057960 AGAAAATTGC
*
90057970 TTTATAATATTCATTTCAAATTGT
1 TTTATAATATTCATTTCAAATTAT
* * *
90057994 TTTATTATATATCATTTTAAGTTAT
1 TTTATAATAT-TCATTTCAAATTAT
90058019 TTTATA
1 TTTATA
90058025 TTTTTATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.58
Consensus pattern (24 bp):
TTTATAATATTCATTTCAAATTAT
Found at i:90058068 original size:24 final size:24
Alignment explanation
Indices: 90058028--90058087 Score: 59
Period size: 24 Copynumber: 2.4 Consensus size: 24
90058018 TTTTATATTT
* *
90058028 TTATTTTAAGTCTTTTTGC-ATTAG
1 TTATTTTAA-ACTTTTTACAATTAG
*
90058052 TTATTTTAAACTGTTTTACATATTAT
1 TTATTTTAAACT-TTTTACA-ATTAG
90058078 TTATTTTAAA
1 TTATTTTAAA
90058088 TATTTTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 2 0.07
24 14 0.47
26 14 0.47
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.58
Consensus pattern (24 bp):
TTATTTTAAACTTTTTACAATTAG
Found at i:90058083 original size:26 final size:25
Alignment explanation
Indices: 90058007--90058114 Score: 84
Period size: 26 Copynumber: 4.4 Consensus size: 25
90057997 ATTATATATC
**
90058007 ATTTTAAGTTATTTT-ATATT-TTT
1 ATTTTAAACTATTTTCATATTATTT
* *
90058030 ATTTTAAGTCT-TTTTGC--ATTAGTT
1 ATTTTAA-ACTATTTT-CATATTATTT
*
90058054 ATTTTAAACTGTTTTACATATTATTT
1 ATTTTAAACTATTTT-CATATTATTT
90058080 ATTTTAAA-TATTTTCATACGTTATTT
1 ATTTTAAACTATTTTCATA--TTATTT
90058106 ATTTTAAAC
1 ATTTTAAAC
90058115 CAAACTATTT
Statistics
Matches: 68, Mismatches: 7, Indels: 16
0.75 0.08 0.18
Matches are distributed among these distances:
23 16 0.24
24 19 0.28
25 5 0.07
26 28 0.41
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (25 bp):
ATTTTAAACTATTTTCATATTATTT
Found at i:90058149 original size:21 final size:22
Alignment explanation
Indices: 90058120--90058161 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
90058110 TAAACCAAAC
* *
90058120 TATTTTAAA-TTTTTTTCATTT
1 TATTATAAACTTTTTATCATTT
90058141 TATTATAAACTTTTTATCATT
1 TATTATAAACTTTTTATCATT
90058162 ATTTATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (22 bp):
TATTATAAACTTTTTATCATTT
Found at i:90058167 original size:21 final size:20
Alignment explanation
Indices: 90058120--90058167 Score: 53
Period size: 22 Copynumber: 2.4 Consensus size: 20
90058110 TAAACCAAAC
*
90058120 TATTT-TAAATTTTTTTCAT
1 TATTTATAAATTTTTATCAT
*
90058139 TTTATTATAAACTTTTTATCAT
1 TAT-TTATAAA-TTTTTATCAT
90058161 TATTTAT
1 TATTTAT
90058168 TTTAAGATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 2 0.09
20 2 0.09
21 8 0.35
22 11 0.48
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (20 bp):
TATTTATAAATTTTTATCAT
Found at i:90058178 original size:24 final size:23
Alignment explanation
Indices: 90058120--90058191 Score: 69
Period size: 24 Copynumber: 3.1 Consensus size: 23
90058110 TAAACCAAAC
*
90058120 TATTTTAAATTTTTTTCA-T-TT
1 TATTTTAAATTTTTATCATTATT
*
90058141 TATTATAAACTTTTTATCATTATT
1 TATTTTAAA-TTTTTATCATTATT
*
90058165 TATTTTAAGATTTTATAT-ATTACT
1 TATTTTAA-ATTTT-TATCATTATT
90058189 TAT
1 TAT
90058192 ATTGAATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
21 8 0.19
22 8 0.19
23 1 0.02
24 21 0.50
25 4 0.10
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.62
Consensus pattern (23 bp):
TATTTTAAATTTTTATCATTATT
Found at i:90058277 original size:25 final size:25
Alignment explanation
Indices: 90058249--90058448 Score: 102
Period size: 24 Copynumber: 8.2 Consensus size: 25
90058239 TTTATAGGTC
*
90058249 ATTTTAAATTGTTTATAAATTATTT
1 ATTTTAAATTGTTTATATATTATTT
*
90058274 ATTTT-AA--GTTCTCTATA-TA-TT
1 ATTTTAAATTGTT-TATATATTATTT
* * *
90058295 ATTTT--ATTGTTTTGTATATTAATG
1 ATTTTAAATTG-TTTATATATTATTT
*
90058319 ATTTTAAATTGTTT-TATACTATTT
1 ATTTTAAATTGTTTATATATTATTT
* *
90058343 ATTTTAAATTGCTTCT-TATAGTATCT
1 ATTTTAAATTG-TT-TATATATTATTT
*
90058369 ATTTTAAACTTGTTTTTCTATATATTATTC
1 ATTTTAAA-TTG---TT-TATATATTATTT
* *
90058399 ATTTGAAATTG--TCT-TATTATTT
1 ATTTTAAATTGTTTATATATTATTT
* * *
90058421 ATCTTAAATTGTTT-TGTAGTATTT
1 ATTTTAAATTGTTTATATATTATTT
90058445 ATTT
1 ATTT
90058449 CATTTTTTTC
Statistics
Matches: 138, Mismatches: 20, Indels: 35
0.72 0.10 0.18
Matches are distributed among these distances:
20 1 0.01
21 7 0.05
22 27 0.20
23 11 0.08
24 37 0.27
25 10 0.07
26 21 0.15
27 3 0.02
29 7 0.05
30 14 0.10
ACGTcount: A:0.28, C:0.06, G:0.07, T:0.59
Consensus pattern (25 bp):
ATTTTAAATTGTTTATATATTATTT
Found at i:90058418 original size:22 final size:22
Alignment explanation
Indices: 90058391--90058432 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
90058381 TTTTTCTATA
90058391 TATTATTCAT-TTGAAATTGTCT
1 TATTATTCATCTT-AAATTGTCT
*
90058413 TATTATTTATCTTAAATTGT
1 TATTATTCATCTTAAATTGT
90058433 TTTGTAGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
TATTATTCATCTTAAATTGTCT
Found at i:90060839 original size:16 final size:17
Alignment explanation
Indices: 90060818--90060855 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
90060808 GTTTCTTATG
* *
90060818 ATATAAACTACATAAT-
1 ATATAAAATAAATAATA
90060834 ATATAAAATAAATAATA
1 ATATAAAATAAATAATA
90060851 ATATA
1 ATATA
90060856 TTAAAAACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (17 bp):
ATATAAAATAAATAATA
Found at i:90060862 original size:21 final size:21
Alignment explanation
Indices: 90060820--90060861 Score: 61
Period size: 19 Copynumber: 2.0 Consensus size: 21
90060810 TTCTTATGAT
90060820 ATAAACTACATAATATATAAA
1 ATAAACTACATAATATATAAA
90060841 ATAAA-TA-ATAATATATTAAA
1 ATAAACTACATAATATA-TAAA
90060861 A
1 A
90060862 ACTTGAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 8 0.40
20 7 0.35
21 5 0.25
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAAACTACATAATATATAAA
Found at i:90067753 original size:17 final size:18
Alignment explanation
Indices: 90067728--90067766 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
90067718 CAATATTTTA
90067728 AAAATTAAATAATTTCTT
1 AAAATTAAATAATTTCTT
* *
90067746 AAAA-TAAATATTTTTTT
1 AAAATTAAATAATTTCTT
90067763 AAAA
1 AAAA
90067767 ATCATTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
AAAATTAAATAATTTCTT
Found at i:90067926 original size:21 final size:23
Alignment explanation
Indices: 90067885--90067926 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
90067875 AATTTATTTA
*
90067885 AAAATTAGTTATAAGAAATTATT
1 AAAATTAGGTATAAGAAATTATT
90067908 AAAATTAGGTA-AA-AAATTA
1 AAAATTAGGTATAAGAAATTA
90067927 ACAATAGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 2 0.11
23 10 0.56
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (23 bp):
AAAATTAGGTATAAGAAATTATT
Found at i:90069165 original size:15 final size:15
Alignment explanation
Indices: 90069145--90069195 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
90069135 CCAAAGTATG
90069145 TTATGTATATTACTA
1 TTATGTATATTACTA
* *
90069160 TTATGTAT-GTA-TG
1 TTATGTATATTACTA
*
90069173 CTATGTATATTACTA
1 TTATGTATATTACTA
*
90069188 TGATGTAT
1 TTATGTAT
90069196 GTCTATTATG
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
13 8 0.30
14 4 0.15
15 15 0.56
ACGTcount: A:0.29, C:0.06, G:0.14, T:0.51
Consensus pattern (15 bp):
TTATGTATATTACTA
Found at i:90069178 original size:28 final size:28
Alignment explanation
Indices: 90069140--90069197 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
90069130 CTTTACCAAA
* *
90069140 GTATGTTATGTATATTACTATTATGTAT
1 GTATGCTATGTATATTACTATGATGTAT
90069168 GTATGCTATGTATATTACTATGATGTAT
1 GTATGCTATGTATATTACTATGATGTAT
90069196 GT
1 GT
90069198 CTATTATGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.05, G:0.17, T:0.50
Consensus pattern (28 bp):
GTATGCTATGTATATTACTATGATGTAT
Found at i:90069205 original size:28 final size:28
Alignment explanation
Indices: 90069140--90069241 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 28
90069130 CTTTACCAAA
* *
90069140 GTATGTTATGTATATTACTATTATGTAT
1 GTATATTATGTATATTACTATGATGTAT
**
90069168 GTATGCTATGTATATTACTATGATGTAT
1 GTATATTATGTATATTACTATGATGTAT
* * *
90069196 GTCTATTATGTTTAATGTATGTAT-AT-TAT
1 GTATATTATGTAT-AT-TA-CTATGATGTAT
*
90069225 GTATGTTATGTATATTA
1 GTATATTATGTATATTA
90069242 TTGTTATGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 15 0.25
30 4 0.07
31 3 0.05
ACGTcount: A:0.28, C:0.04, G:0.16, T:0.52
Consensus pattern (28 bp):
GTATATTATGTATATTACTATGATGTAT
Found at i:90069225 original size:9 final size:9
Alignment explanation
Indices: 90069140--90069242 Score: 66
Period size: 9 Copynumber: 11.0 Consensus size: 9
90069130 CTTTACCAAA
*
90069140 GTATGTTAT
1 GTATATTAT
90069149 GTATATTA-
1 GTATATTAT
*
90069157 CTATTATGTAT
1 GTA-TAT-TAT
**
90069168 GTATGCTAT
1 GTATATTAT
90069177 GTATATTA-
1 GTATATTAT
*
90069185 CTATGATGTAT
1 GTAT-AT-TAT
*
90069196 GTCTATTAT
1 GTATATTAT
*
90069205 GTTTAATGTAT
1 GTAT-AT-TAT
90069216 GTATATTAT
1 GTATATTAT
*
90069225 GTATGTTAT
1 GTATATTAT
90069234 GTATATTAT
1 GTATATTAT
90069243 TGTTATGTAT
Statistics
Matches: 72, Mismatches: 14, Indels: 16
0.71 0.14 0.16
Matches are distributed among these distances:
8 5 0.07
9 46 0.64
10 11 0.15
11 10 0.14
ACGTcount: A:0.28, C:0.04, G:0.16, T:0.52
Consensus pattern (9 bp):
GTATATTAT
Found at i:90069294 original size:77 final size:75
Alignment explanation
Indices: 90069201--90069348 Score: 233
Period size: 77 Copynumber: 1.9 Consensus size: 75
90069191 TGTATGTCTA
* * *
90069201 TTATGTTTAATGTATGTATATTATGTATGTTATGTATATTATTGTTATGTATGAGACTGTTATGT
1 TTATGCTTAATGTATGTAAATTATGTATGTTATGTATATTACTGTTATGTAT-AGA-TGTTATGT
90069266 GGTATATTACTG
64 GGTATATTACTG
* *
90069278 TTATGCTTCATGTATGTAAATTATGTATGTTATGTATATTACTGTTATGTATATATGTTATGTGG
1 TTATGCTTAATGTATGTAAATTATGTATGTTATGTATATTACTGTTATGTATAGATGTTATGTGG
90069343 TATATT
66 TATATT
90069349 TGTAACATCC
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
75 16 0.24
76 2 0.03
77 48 0.73
ACGTcount: A:0.26, C:0.03, G:0.18, T:0.52
Consensus pattern (75 bp):
TTATGCTTAATGTATGTAAATTATGTATGTTATGTATATTACTGTTATGTATAGATGTTATGTGG
TATATTACTG
Found at i:90072058 original size:29 final size:29
Alignment explanation
Indices: 90072019--90072118 Score: 157
Period size: 29 Copynumber: 3.5 Consensus size: 29
90072009 GCAATATTAC
* *
90072019 TGTTT-ATGTATGTACATTATATATGTTA
1 TGTTTAATGTATGTATATTATGTATGTTA
90072047 TGTTTAATGTATGTATATTATGTATGTTA
1 TGTTTAATGTATGTATATTATGTATGTTA
*
90072076 TGTTTAATGTATGTATACTATGTATGTTA
1 TGTTTAATGTATGTATATTATGTATGTTA
*
90072105 TATTTAATGTATGT
1 TGTTTAATGTATGT
90072119 TATGTTTAGC
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
28 5 0.07
29 62 0.93
ACGTcount: A:0.28, C:0.02, G:0.16, T:0.54
Consensus pattern (29 bp):
TGTTTAATGTATGTATATTATGTATGTTA
Found at i:90072070 original size:9 final size:9
Alignment explanation
Indices: 90072012--90072105 Score: 53
Period size: 9 Copynumber: 9.8 Consensus size: 9
90072002 GAGTGTTGCA
90072012 ATATTACTGT
1 ATATTA-TGT
*
90072022 TTATGTATGT
1 ATAT-TATGT
* *
90072032 ACATTATAT
1 ATATTATGT
*
90072041 ATGTTATGT
1 ATATTATGT
*
90072050 TTAATGTATGT
1 AT-AT-TATGT
90072061 ATATTATGT
1 ATATTATGT
*
90072070 ATGTTATGT
1 ATATTATGT
*
90072079 TTAATGTATGT
1 AT-AT-TATGT
*
90072090 ATACTATGT
1 ATATTATGT
*
90072099 ATGTTAT
1 ATATTAT
90072106 ATTTAATGTA
Statistics
Matches: 62, Mismatches: 17, Indels: 11
0.69 0.19 0.12
Matches are distributed among these distances:
9 35 0.56
10 13 0.21
11 14 0.23
ACGTcount: A:0.29, C:0.03, G:0.15, T:0.53
Consensus pattern (9 bp):
ATATTATGT
Found at i:90072087 original size:16 final size:16
Alignment explanation
Indices: 90072040--90072126 Score: 96
Period size: 16 Copynumber: 5.8 Consensus size: 16
90072030 GTACATTATA
90072040 TATGTTATGTTTAATG
1 TATGTTATGTTTAATG
*
90072056 TATG-TAT-ATT-ATG
1 TATGTTATGTTTAATG
90072069 TATGTTATGTTTAATG
1 TATGTTATGTTTAATG
**
90072085 TATG-TAT-ACT-ATG
1 TATGTTATGTTTAATG
*
90072098 TATGTTATATTTAATG
1 TATGTTATGTTTAATG
90072114 TATGTTATGTTTA
1 TATGTTATGTTTA
90072127 GCACTGTTTA
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
13 14 0.24
14 9 0.16
15 9 0.16
16 26 0.45
ACGTcount: A:0.28, C:0.01, G:0.16, T:0.55
Consensus pattern (16 bp):
TATGTTATGTTTAATG
Found at i:90082403 original size:67 final size:67
Alignment explanation
Indices: 90082317--90082492 Score: 289
Period size: 67 Copynumber: 2.6 Consensus size: 67
90082307 TAGAGCAGAT
* * * *
90082317 ATATATGTGGCAAAGCCACCAGATTACAGCGAGGCTACCAGATATTGTGACGAAGTCATCAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTACCAGATATTGTGACGAAGTCAACAGAAC
90082382 AG
66 AG
*
90082384 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTACCAGATATTGTGGCGAAGTCAACAGAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTACCAGATATTGTGACGAAGTCAACAGAAC
90082449 AG
66 AG
* *
90082451 TTATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGA
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTACCAGA
90082493 ACACTTCCTC
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 102 1.00
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (67 bp):
ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTACCAGATATTGTGACGAAGTCAACAGAAC
AG
Found at i:90089924 original size:67 final size:67
Alignment explanation
Indices: 90089837--90090012 Score: 318
Period size: 67 Copynumber: 2.6 Consensus size: 67
90089827 GAGCAGATAT
* *
90089837 ATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTT-ACCAGAA
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAA-TTCACCAAAA
90089901 CAG
65 CAG
90089904 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAATTCACCAAAAC
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAATTCACCAAAAC
90089969 AG
66 AG
90089971 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGA
1 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGA
90090013 ACGCTTCTTC
Statistics
Matches: 106, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
66 2 0.02
67 104 0.98
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.19
Consensus pattern (67 bp):
ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTGCCAGATATTGTGACGAATTCACCAAAAC
AG
Found at i:90091983 original size:27 final size:27
Alignment explanation
Indices: 90091952--90092129 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
90091942 TAAATTGTAC
90091952 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
90091979 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
90092005 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
90092033 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
90092061 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
90092088 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
90092115 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
90092130 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:90092066 original size:82 final size:81
Alignment explanation
Indices: 90091953--90092108 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
90091943 AAATTGTACA
* *
90091953 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
90092017 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
90092034 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
90092099 TGCGAGTTGA
65 TGCGAATTGA
90092109 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:90092120 original size:82 final size:81
Alignment explanation
Indices: 90091949--90092129 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
90091939 GATTAAATTG
* *
90091949 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
90092014 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
90092030 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
90092094 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
90092112 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
90092130 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:90098688 original size:25 final size:24
Alignment explanation
Indices: 90098630--90098689 Score: 59
Period size: 26 Copynumber: 2.4 Consensus size: 24
90098620 AAAACCTGGG
* *
90098630 GATG-AAACAGGGAAAAATTAAGA
1 GATGCAAAGAGGGAAAAATAAAGA
*
90098653 GAAAGCAAAAGAGGGAAAAATAAAAGA
1 G-ATGC-AAAGAGGGAAAAAT-AAAGA
90098680 GATGCAAAGA
1 GATGCAAAGA
90098690 AAATGAAAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
23 1 0.03
24 2 0.07
25 5 0.17
26 16 0.55
27 5 0.17
ACGTcount: A:0.60, C:0.05, G:0.27, T:0.08
Consensus pattern (24 bp):
GATGCAAAGAGGGAAAAATAAAGA
Found at i:90099341 original size:26 final size:24
Alignment explanation
Indices: 90099311--90099360 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
90099301 AAATAAAAAA
*
90099311 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
90099337 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
90099361 TAAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:90099466 original size:15 final size:16
Alignment explanation
Indices: 90099436--90099468 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
90099426 AAATGGTTAT
90099436 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
90099453 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
90099468 A
1 A
90099469 ATATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:90099871 original size:32 final size:32
Alignment explanation
Indices: 90099816--90099876 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
90099806 TTTTTTATTA
*
90099816 CTAAAAAATATTAAAATTATTAAA-AATTGTC
1 CTAAAAAATATTAAAAATATTAAATAATTGTC
90099847 CTAAACAAATATTAAATAAT-TTAAATAATT
1 CTAAA-AAATATTAAA-AATATTAAATAATT
90099877 TTTTTTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 5 0.19
32 15 0.58
33 6 0.23
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.36
Consensus pattern (32 bp):
CTAAAAAATATTAAAAATATTAAATAATTGTC
Found at i:90125099 original size:21 final size:20
Alignment explanation
Indices: 90125074--90125138 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 20
90125064 TAGCCTTCGG
90125074 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTT-TGT
* * *
90125095 GCTTCAG-TTAGC-CTTCGG
1 GCTTCCGTTTAGCACTTTGT
90125113 GCTTCCGTTTAGCACTTTTGT
1 GCTTCCGTTTAGCAC-TTTGT
90125134 GCTTC
1 GCTTC
90125139 AGTTAGATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 7 0.20
19 8 0.23
20 6 0.17
21 14 0.40
ACGTcount: A:0.11, C:0.26, G:0.22, T:0.42
Consensus pattern (20 bp):
GCTTCCGTTTAGCACTTTGT
Found at i:90125110 original size:39 final size:39
Alignment explanation
Indices: 90125056--90125144 Score: 160
Period size: 39 Copynumber: 2.3 Consensus size: 39
90125046 GCTCTGATGA
*
90125056 GCTTCAATTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
90125095 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTTTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
90125134 GCTTCAGTTAG
1 GCTTCAGTTAG
90125145 ATTTCGGGTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.13, C:0.25, G:0.22, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:90133317 original size:40 final size:40
Alignment explanation
Indices: 90133087--90133310 Score: 269
Period size: 40 Copynumber: 5.6 Consensus size: 40
90133077 TGAATGATGT
* * * *
90133087 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
90133127 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
90133167 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
90133205 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
90133246 CCGGGCTAAGTCCCGAAGACATTTGTGCGAGTCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
90133286 CCGGGCTATGTCCCCAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
90133311 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 35 0.22
40 117 0.72
41 10 0.06
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:90133332 original size:119 final size:119
Alignment explanation
Indices: 90133086--90133343 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
90133076 TTGAATGATG
* * *
90133086 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGACATTT
* * * **
90133151 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTCACTAATACCGGGCTAAGCCCCAAGGCATTGGAACGAGTTACTAAA
* * * *
90133205 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGACAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGACAT
* * *
90133268 TTGTGCGAGTCACT-ATAACCGGGCTATGTCCCCAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTCACTAAT-ACCGGGCTAAG-CCCCAAGGCATTGGAACGAGTTA-CTAAA
* *
90133325 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
90133344 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.72
120 30 0.26
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGACATTT
GTGCGAGTCACTAATACCGGGCTAAGCCCCAAGGCATTGGAACGAGTTACTAAA
Found at i:90141305 original size:40 final size:39
Alignment explanation
Indices: 90141221--90141445 Score: 215
Period size: 40 Copynumber: 5.6 Consensus size: 39
90141211 TTGAATGATG
* * *
90141221 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAT
*
90141260 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
90141301 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
* *
90141340 TCTGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTAAT
* *
90141379 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACT-AT
1 -TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT
* * *
90141419 AACCGGGCTATGTCCCCAAGGCATTTG
1 -TCCGGGCTAAGT-CCGAAGGCATTTG
90141446 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
39 36 0.22
40 113 0.71
41 11 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:90141459 original size:80 final size:80
Alignment explanation
Indices: 90141221--90141464 Score: 266
Period size: 80 Copynumber: 3.1 Consensus size: 80
90141211 TTGAATGATG
* * * * *
90141221 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTATAACCGGGCTAAG-TCCCGAAGGCAT
90141284 TTGTGCGAGTTACTA-A
64 TTGTGCGAGTTACTATA
* * * * *
90141300 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCTGGGTTAAGTCTCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAA-CCGGGCTAAGTCCCGAAGGCAT
90141363 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* * *
90141380 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAACCGGGCTATGTCCCCAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAACCGGGCTAAGTCCCGAAGGCATTT
**
90141445 GAACGAG-TAGCTATA
66 GTGCGAGTTA-CTATA
90141460 TCCGG
1 TCCGG
90141465 TTAAATTCCG
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
78 2 0.01
79 58 0.42
80 75 0.55
81 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:90141467 original size:119 final size:119
Alignment explanation
Indices: 90141228--90141478 Score: 269
Period size: 119 Copynumber: 2.1 Consensus size: 119
90141218 ATGTCCGGGC
*
90141228 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGTGCGAG
* * * ** *
90141293 TTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCTGGGT
66 TCACTAATACCGGGCTAAGCCCCAAGGCATTGGAACGAGTTACTAAATCTCGGT
* * * * *
90141347 TAAGTCTCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTGTGCG
* * *
90141410 AGTCACT-ATAACCGGGCTATGTCCCCAAGGCATTTGAACGAG-TAGCTATATC-CGGT
64 AGTCACTAAT-ACCGGGCTAAG-CCCCAAGGCATTGGAACGAGTTA-CTAAATCTCGGT
* *
90141466 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
90141479 TACGTGATTT
Statistics
Matches: 109, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
118 3 0.03
119 77 0.71
120 29 0.27
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGTGCGAG
TCACTAATACCGGGCTAAGCCCCAAGGCATTGGAACGAGTTACTAAATCTCGGT
Found at i:90144486 original size:21 final size:20
Alignment explanation
Indices: 90144461--90144525 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 20
90144451 TAGCCTTCGG
90144461 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTT-TGT
* * *
90144482 GCTTCAG-TTAGC-CTTCGG
1 GCTTCCGTTTAGCACTTTGT
90144500 GCTTCCGTTTAGCACTTTTGT
1 GCTTCCGTTTAGCAC-TTTGT
90144521 GCTTC
1 GCTTC
90144526 AGCTAGATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 7 0.20
19 8 0.23
20 6 0.17
21 14 0.40
ACGTcount: A:0.11, C:0.26, G:0.22, T:0.42
Consensus pattern (20 bp):
GCTTCCGTTTAGCACTTTGT
Found at i:90144489 original size:39 final size:39
Alignment explanation
Indices: 90144443--90144527 Score: 161
Period size: 39 Copynumber: 2.2 Consensus size: 39
90144433 GCTCTGATGA
90144443 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
*
90144482 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTTTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
90144521 GCTTCAG
1 GCTTCAG
90144528 CTAGATTTCG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.12, C:0.26, G:0.24, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:90144538 original size:39 final size:39
Alignment explanation
Indices: 90144443--90144539 Score: 140
Period size: 39 Copynumber: 2.5 Consensus size: 39
90144433 GCTCTGATGA
* *
90144443 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGCTAGACTTCGGGCTTCCGTTTAGCACTTATGT
* * *
90144482 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTTTGT
1 GCTTCAGCTAGACTTCGGGCTTCCGTTTAGCACTTATGT
*
90144521 GCTTCAGCTAGATTTCGGG
1 GCTTCAGCTAGACTTCGGG
90144540 TATTAGATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.12, C:0.25, G:0.25, T:0.38
Consensus pattern (39 bp):
GCTTCAGCTAGACTTCGGGCTTCCGTTTAGCACTTATGT
Found at i:90148035 original size:18 final size:18
Alignment explanation
Indices: 90147997--90148073 Score: 57
Period size: 18 Copynumber: 4.3 Consensus size: 18
90147987 AGTCAGTCAA
** *
90147997 CAGTAATAATCGGTTAAT
1 CAGTAATAATCATTTATT
*
90148015 CAGTAATATTCATTTATT
1 CAGTAATAATCATTTATT
* *
90148033 CAGT-ATCAGTCGTTTATT
1 CAGTAAT-AATCATTTATT
* * *
90148051 CTGTAACAATCAATTATT
1 CAGTAATAATCATTTATT
90148069 CAGTA
1 CAGTA
90148074 GCAGACAGTC
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
17 2 0.04
18 42 0.93
19 1 0.02
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (18 bp):
CAGTAATAATCATTTATT
Found at i:90148271 original size:54 final size:51
Alignment explanation
Indices: 90148207--90148324 Score: 130
Period size: 51 Copynumber: 2.3 Consensus size: 51
90148197 CCGTAAGGAT
90148207 AACAGTAACAGTAACAG-TAGCGGTACACAAAGTACCTCATCGAAACAAATCCGA
1 AACAGTAACAGTAACAGTTA--GGT--ACAAAGTACCTCATCGAAACAAATCCGA
* * * * * *
90148261 AACAGTAACAGTCACAGTTAGGTACAGAGTACCTCTTCGGAACGAATCCGG
1 AACAGTAACAGTAACAGTTAGGTACAAAGTACCTCATCGAAACAAATCCGA
*
90148312 AACAGTCACAGTA
1 AACAGTAACAGTA
90148325 GTCGACACAT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
51 34 0.62
53 3 0.05
54 16 0.29
55 2 0.04
ACGTcount: A:0.40, C:0.24, G:0.19, T:0.17
Consensus pattern (51 bp):
AACAGTAACAGTAACAGTTAGGTACAAAGTACCTCATCGAAACAAATCCGA
Found at i:90148794 original size:4 final size:4
Alignment explanation
Indices: 90148779--90148816 Score: 58
Period size: 4 Copynumber: 9.2 Consensus size: 4
90148769 GATTTTCCAT
*
90148779 TTTC TCTC TTTC TTTC TTTC TTTC TTTCC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTT-C TTTC TTTC T
90148817 CCCATGTTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
4 27 0.87
5 4 0.13
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTC
Found at i:90149494 original size:32 final size:32
Alignment explanation
Indices: 90149453--90149517 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
90149443 TGAATTAGAA
90149453 GAAAATTTTACGACTTTAAAAATAATTTAATT
1 GAAAATTTTACGACTTTAAAAATAATTTAATT
* *
90149485 GAAAATTTTATGACTTTAGAAATAATTTAATT
1 GAAAATTTTACGACTTTAAAAATAATTTAATT
90149517 G
1 G
90149518 GGTCAATCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.42
Consensus pattern (32 bp):
GAAAATTTTACGACTTTAAAAATAATTTAATT
Found at i:90153016 original size:37 final size:37
Alignment explanation
Indices: 90152975--90153082 Score: 198
Period size: 37 Copynumber: 2.9 Consensus size: 37
90152965 ATCGGATTAT
*
90152975 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
*
90153012 CGGACATAATCTTCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
90153049 CGGACATAATCTCCACACGTAGTCATCGGGTCTT
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTT
90153083 TAGAGCTCGG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:90153272 original size:47 final size:47
Alignment explanation
Indices: 90153201--90153745 Score: 769
Period size: 47 Copynumber: 11.7 Consensus size: 47
90153191 CCCTTCGGGA
* * * * * *
90153201 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
90153248 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90153295 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90153342 CTTATCACATATACACACTTTCACATTCAT--CA-----CA-T----
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90153377 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90153424 CTTATCACATATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90153472 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90153519 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90153568 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90153617 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90153664 CTTATCTCATATATGCA-TGTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* * *
90153711 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
90153746 AGAATCCTAA
Statistics
Matches: 465, Mismatches: 15, Indels: 36
0.90 0.03 0.07
Matches are distributed among these distances:
35 29 0.06
37 2 0.00
39 1 0.00
40 1 0.00
42 2 0.00
43 1 0.00
45 2 0.00
46 31 0.07
47 254 0.55
48 16 0.03
49 126 0.27
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90153279 original size:25 final size:25
Alignment explanation
Indices: 90153251--90153329 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
90153241 ACTCGGCCCT
90153251 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
90153276 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
90153298 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
90153323 ATCACAT
1 ATCACAT
90153330 CGGCTATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:90153382 original size:35 final size:35
Alignment explanation
Indices: 90153342--90153412 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
90153332 GCTATTAGGC
90153342 CTTATCACATATACACACTTTCACATTCATCACAT
1 CTTATCACATATACACACTTTCACATTCATCACAT
*
90153377 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATACACACTTTCACATTCATCACAT
90153412 C
1 C
90153413 GGCCATTAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.35
Consensus pattern (35 bp):
CTTATCACATATACACACTTTCACATTCATCACAT
Found at i:90153484 original size:95 final size:96
Alignment explanation
Indices: 90153377--90153724 Score: 614
Period size: 95 Copynumber: 3.6 Consensus size: 96
90153367 TTCATCACAT
90153377 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
90153442 ACTTTCACATTCATCACATCGG-CATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
90153472 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
90153537 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
90153568 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
90153631 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
90153664 CTTATCTCATATATGCA-TGTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATAT
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
90153725 GCATGTTCAC
Statistics
Matches: 244, Mismatches: 3, Indels: 11
0.95 0.01 0.04
Matches are distributed among these distances:
93 1 0.00
94 43 0.18
95 87 0.36
96 66 0.27
98 47 0.19
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90161412 original size:20 final size:21
Alignment explanation
Indices: 90161383--90161423 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
90161373 ATTGACTTAA
*
90161383 TTTAATATATATTT-TAATTT
1 TTTAAAATATATTTATAATTT
90161403 TTTAAAATATATTTATAATTT
1 TTTAAAATATATTTATAATTT
90161424 ATATATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTAAAATATATTTATAATTT
Found at i:90164663 original size:35 final size:35
Alignment explanation
Indices: 90164577--90164861 Score: 421
Period size: 35 Copynumber: 8.2 Consensus size: 35
90164567 TTCAAATGAT
* *
90164577 TTTCACAACTCGGTATGGAAAATGCCATACCTACG
1 TTTCACAACTCGGTATGGATAATACCATACCTACG
** *
90164612 -TTCTTAACTCAGTATGGATAATACCATACCTACG
1 TTTCACAACTCGGTATGGATAATACCATACCTACG
*
90164646 TTTCACAACTCGGTATGGATGATACCATACCTACG
1 TTTCACAACTCGGTATGGATAATACCATACCTACG
* * *
90164681 TATCACAACTCAGTATGGTTAATACCATACCTAC-
1 TTTCACAACTCGGTATGGATAATACCATACCTACG
*
90164715 TTTCACAACTCGGTATGGATGATACCATACCTACG
1 TTTCACAACTCGGTATGGATAATACCATACCTACG
* *
90164750 TTTCACAACTCGGTATGGTTAATACCATACTTACG
1 TTTCACAACTCGGTATGGATAATACCATACCTACG
* *
90164785 TTTCACAACTCGGTATGGATGATATCATACCTACG
1 TTTCACAACTCGGTATGGATAATACCATACCTACG
*
90164820 TTTCACAACTCGGTATGGATGATACCATACCTACG
1 TTTCACAACTCGGTATGGATAATACCATACCTACG
90164855 TTTCACA
1 TTTCACA
90164862 CTTTGCCATA
Statistics
Matches: 223, Mismatches: 25, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
34 59 0.26
35 164 0.74
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (35 bp):
TTTCACAACTCGGTATGGATAATACCATACCTACG
Found at i:90164881 original size:104 final size:105
Alignment explanation
Indices: 90164577--90164861 Score: 430
Period size: 104 Copynumber: 2.7 Consensus size: 105
90164567 TTCAAATGAT
* * ** * *
90164577 TTTCACAACTCGGTATGGAAAATGCCATACCTACG-TTCTTAACTCAGTATGGATAATACCATAC
1 TTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACAACTCGGTATGGATGATACCATAC
*
90164641 CTACGTTTCACAACTCGGTATGGATGATACCATACCTACG
66 CTACGTTTCACAACTCGGTATGGATAATACCATACCTACG
* * *
90164681 TATCACAACTCAGTATGGTTAATACCATACCTAC-TTTCACAACTCGGTATGGATGATACCATAC
1 TTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACAACTCGGTATGGATGATACCATAC
* *
90164745 CTACGTTTCACAACTCGGTATGGTTAATACCATACTTACG
66 CTACGTTTCACAACTCGGTATGGATAATACCATACCTACG
* *
90164785 TTTCACAACTCGGTATGGATGATATCATACCTACGTTTCACAACTCGGTATGGATGATACCATAC
1 TTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACAACTCGGTATGGATGATACCATAC
90164850 CTACGTTTCACA
66 CTACGTTTCACA
90164862 CTTTGCCATA
Statistics
Matches: 162, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
104 120 0.74
105 42 0.26
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (105 bp):
TTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACAACTCGGTATGGATGATACCATAC
CTACGTTTCACAACTCGGTATGGATAATACCATACCTACG
Found at i:90169804 original size:35 final size:35
Alignment explanation
Indices: 90169778--90170166 Score: 498
Period size: 35 Copynumber: 11.2 Consensus size: 35
90169768 CATGGCAAAG
* *
90169778 TGTGAAACGTACGTATGGTATCATCCATACGGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* * * *
90169813 TGTGAAATGTAGGTATGGTATTAACCATATCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
90169848 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* *
90169883 TGTGAAACGTAGGTATGGTATTAACCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
*
90169918 TGTGAAACGTAGGTATGGTATCATTCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* * *
90169953 TG-GAAA-GTAGGTATGGTATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
*
90169986 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* * * *
90170021 TGTGAAACGTAGTTATGGTATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* *
90170056 TGTGAAATGTAGGTATGGTATCATCCATACCGGGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
* * *
90170091 TATGAAACGTAGGTATGGTATTATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
** * * *
90170126 TAAG-AATGTAGGTATGGCAT-TTCTCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCATC-CATACCGAGT
90170160 TGTGAAA
1 TGTGAAA
90170167 TGTAAATAAA
Statistics
Matches: 308, Mismatches: 42, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
33 27 0.09
34 33 0.11
35 248 0.81
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.31
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
Found at i:90169895 original size:70 final size:70
Alignment explanation
Indices: 90169778--90170166 Score: 581
Period size: 70 Copynumber: 5.6 Consensus size: 70
90169768 CATGGCAAAG
* * *
90169778 TGTGAAACGTACGTATGGTATCATCCATACGGAGTTGTGAAATGTAGGTATGGTATTAACCATA-
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
90169842 TCGAGT
66 T-GAGT
90169848 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
*
90169913 CGAGT
66 TGAGT
*
90169918 TGTGAAACGTAGGTATGGTATCATTCATACCGAGTTG-GAAA-GTAGGTATGGTATTAACCATAC
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
90169981 TGAGT
66 TGAGT
* *
90169986 TGTGAAACGTAGGTATGGTATCATCCATACTGAGTTGTGAAACGTAGTTATGGTATTAACCATAC
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
90170051 TGAGT
66 TGAGT
* * * *
90170056 TGTGAAATGTAGGTATGGTATCATCCATACCGGGTTATGAAACGTAGGTATGGTATTATCCATAC
1 TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
90170121 TGAGT
66 TGAGT
** * * *
90170126 TAAG-AATGTAGGTATGGCAT-TTCTCATACCGAGTTGTGAAA
1 TGTGAAACGTAGGTATGGTATCATC-CATACCGAGTTGTGAAA
90170167 TGTAAATAAA
Statistics
Matches: 294, Mismatches: 21, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
68 63 0.21
69 38 0.13
70 193 0.66
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.31
Consensus pattern (70 bp):
TGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCATAC
TGAGT
Found at i:90170086 original size:173 final size:174
Alignment explanation
Indices: 90169781--90170166 Score: 517
Period size: 173 Copynumber: 2.2 Consensus size: 174
90169771 GGCAAAGTGT
* * * * *
90169781 GAAACGTACGTATGGTATCATCCATACGGAGTTGTGAAATGTAGGTATGGTATTAACCATATCGA
1 GAAA-GTAGGTATGGTATTATCCATACCGAGTTGTGAAACGTAGGTATGGTATCAACCATATCGA
* *
90169846 GTTGTGAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAACGTAGGTATGGTATTAACCAT
65 GTTGTGAAACGTAGGTATGGTATCAACCATACCGAGTTGTGAAACGTAGGTATGGTATCAACCAT
* * *
90169911 ACCGAGTTGTGAAACGTAGGTATGGTATCATTCATACCGAGTT-G
130 ACCGAGTTATGAAACGTAGGTATGGTATCATCCATACCGAGTTAA
* * *
90169955 GAAAGTAGGTATGGTATTAACCATACTGAGTTGTGAAACGTAGGTATGGTATCATCCATA-CTGA
1 GAAAGTAGGTATGGTATTATCCATACCGAGTTGTGAAACGTAGGTATGGTATCAACCATATC-GA
* * * * *
90170019 GTTGTGAAACGTAGTTATGGTATTAACCATACTGAGTTGTGAAATGTAGGTATGGTATCATCCAT
65 GTTGTGAAACGTAGGTATGGTATCAACCATACCGAGTTGTGAAACGTAGGTATGGTATCAACCAT
* * *
90170084 ACCGGGTTATGAAACGTAGGTATGGTATTATCCATACTGAGTTAA
130 ACCGAGTTATGAAACGTAGGTATGGTATCATCCATACCGAGTTAA
* *
90170129 GAATGTAGGTATGGCATT-TCTCATACCGAGTTGTGAAA
1 GAAAGTAGGTATGGTATTATC-CATACCGAGTTGTGAAA
90170167 TGTAAATAAA
Statistics
Matches: 185, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
172 1 0.01
173 148 0.80
174 36 0.19
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.31
Consensus pattern (174 bp):
GAAAGTAGGTATGGTATTATCCATACCGAGTTGTGAAACGTAGGTATGGTATCAACCATATCGAG
TTGTGAAACGTAGGTATGGTATCAACCATACCGAGTTGTGAAACGTAGGTATGGTATCAACCATA
CCGAGTTATGAAACGTAGGTATGGTATCATCCATACCGAGTTAA
Found at i:90171587 original size:10 final size:10
Alignment explanation
Indices: 90171572--90171618 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
90171562 GCGACCTCTC
90171572 AAATTAAACT
1 AAATTAAACT
90171582 AAATTAAACT
1 AAATTAAACT
*
90171592 AAGATTAATCT
1 AA-ATTAAACT
90171603 -AATT-AACT
1 AAATTAAACT
90171611 AAGATTAA
1 AA-ATTAA
90171619 TTATAATCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
8 3 0.10
9 4 0.13
10 16 0.52
11 8 0.26
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.32
Consensus pattern (10 bp):
AAATTAAACT
Found at i:90172977 original size:32 final size:31
Alignment explanation
Indices: 90172940--90173005 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
90172930 TTATATAAAA
*
90172940 TTATTTTACTTCATA-TATCTTAAATTCATAAT
1 TTATTTTAC-TCATACTAAC-TAAATTCATAAT
* *
90172972 TTATTTTTCTCATACTAACTCAATTCATAAT
1 TTATTTTACTCATACTAACTAAATTCATAAT
90173003 TTA
1 TTA
90173006 GTTCATACAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
31 19 0.63
32 11 0.37
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (31 bp):
TTATTTTACTCATACTAACTAAATTCATAAT
Found at i:90174282 original size:12 final size:12
Alignment explanation
Indices: 90174267--90174297 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
90174257 TTCTCTTTTA
90174267 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
90174279 TTTTTCTTTCTC
1 TTTTTCTTTCCC
90174291 TTTTTCT
1 TTTTTCT
90174298 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:90174398 original size:16 final size:16
Alignment explanation
Indices: 90174377--90174407 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90174367 TTTATTATTT
90174377 TATTAACATAATATAA
1 TATTAACATAATATAA
*
90174393 TATTAATATAATATA
1 TATTAACATAATATA
90174408 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:90181555 original size:31 final size:31
Alignment explanation
Indices: 90181517--90181580 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
90181507 CCTTTTCATA
*
90181517 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
90181548 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
90181579 TT
1 TT
90181581 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:90181815 original size:25 final size:23
Alignment explanation
Indices: 90181772--90181941 Score: 182
Period size: 25 Copynumber: 7.0 Consensus size: 23
90181762 TGCTTTATCA
*
90181772 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
90181796 TAGTAACTGGGGCAAAAGCCCTTTT
1 TA-TAACTGGGGCATAAGCCC-TTT
90181821 TATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
90181844 ATCGTAACT-GGGCATAAGCCCTTCAT
1 -T-ATAACTGGGGCATAAGCCCTT--T
* *
90181870 CATAACTGGGGCATAAGCACTTT
1 TATAACTGGGGCATAAGCCCTTT
90181893 ATCATAACTGGGGCATAAGCCCTTT
1 -T-ATAACTGGGGCATAAGCCCTTT
*
90181918 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
90181941 T
1 T
90181942 GCACTTCCTC
Statistics
Matches: 125, Mismatches: 11, Indels: 21
0.80 0.07 0.13
Matches are distributed among these distances:
23 26 0.21
24 43 0.34
25 55 0.44
26 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:90181826 original size:24 final size:24
Alignment explanation
Indices: 90181773--90181941 Score: 193
Period size: 24 Copynumber: 7.0 Consensus size: 24
90181763 GCTTTATCAT
*
90181773 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTC
* *
90181797 AGTAACTGGGGCAAAAGCCCTTTTT
1 A-TAACTGGGGCATAAGCCCTTTTC
90181822 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
* *
90181847 GTAACT-GGGCATAAGCCCTTCATC
1 ATAACTGGGGCATAAGCCCTT-TTC
*
90181871 ATAACTGGGGCATAAGCACTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TC
*
90181896 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTC
90181919 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
90181942 GCACTTCCTC
Statistics
Matches: 126, Mismatches: 11, Indels: 16
0.82 0.07 0.10
Matches are distributed among these distances:
23 20 0.16
24 55 0.44
25 51 0.40
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTC
Found at i:90181851 original size:49 final size:49
Alignment explanation
Indices: 90181772--90181940 Score: 211
Period size: 49 Copynumber: 3.5 Consensus size: 49
90181762 TGCTTTATCA
* * *
90181772 TATAACTGGAGGCCT-AGCCTCTTT-TAGTAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTATCGTAACTGGGGCATAAGCCCTTTT
*
90181821 TATAACTGGGGCATAAGCCCTTTATCGTAACT-GGGCATAAGCCCTTCAT
1 TATAACTGGGGCATAAGCCCTTTATCGTAACTGGGGCATAAGCCCTT-TT
* * *
90181870 CATAACTGGGGCATAAGCACTTTATCATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTATCGTAACTGGGGCATAAGCCCTTTT
*
90181918 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
90181941 TGCACTTCCT
Statistics
Matches: 106, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
48 43 0.41
49 51 0.48
50 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (49 bp):
TATAACTGGGGCATAAGCCCTTTATCGTAACTGGGGCATAAGCCCTTTT
Found at i:90182013 original size:9 final size:9
Alignment explanation
Indices: 90181999--90182055 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
90181989 ATCTCATGTG
90181999 CATATCATA
1 CATATCATA
*
90182008 CATATCATGTG
1 CATATCA--TA
90182019 CATATCATA
1 CATATCATA
* *
90182028 CATGTCATGTG
1 CATATCA--TA
90182039 CATATCATA
1 CATATCATA
90182048 CATATCAT
1 CATATCAT
90182056 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:90182015 original size:20 final size:20
Alignment explanation
Indices: 90181987--90182057 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
90181977 GCATTTATGA
*
90181987 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
90182007 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
90182027 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
90182047 ACATATCATGT
1 ACATATCATGT
90182058 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:90182022 original size:11 final size:11
Alignment explanation
Indices: 90181992--90182046 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
90181982 TATGAACATC
90181992 TCATGTGCATA
1 TCATGTGCATA
*
90182003 TCA--TACATA
1 TCATGTGCATA
90182012 TCATGTGCATA
1 TCATGTGCATA
* *
90182023 TCA--TACATG
1 TCATGTGCATA
90182032 TCATGTGCATA
1 TCATGTGCATA
90182043 TCAT
1 TCAT
90182047 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:90182892 original size:18 final size:17
Alignment explanation
Indices: 90182866--90182899 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
90182856 TTTAATCCTC
*
90182866 ACTAGCACCAACAAACCA
1 ACTAACACCAA-AAACCA
90182884 ACTAACACCAAAAACC
1 ACTAACACCAAAAACC
90182900 CTTTTAGCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.38, G:0.03, T:0.06
Consensus pattern (17 bp):
ACTAACACCAAAAACCA
Found at i:90183398 original size:27 final size:27
Alignment explanation
Indices: 90183298--90183381 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
90183288 GGGCATATTC
* *
90183298 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
90183325 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
90183352 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
90183379 GTC
1 GTC
90183382 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:90183626 original size:81 final size:81
Alignment explanation
Indices: 90183531--90183725 Score: 268
Period size: 81 Copynumber: 2.4 Consensus size: 81
90183521 TTTGTAAATC
*
90183531 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CCAGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAATCAAG-GGTATTT
* *
90183595 TGGTAATTTTACAAACT
65 TAGCAATTTTACAAACT
* *
90183612 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAATCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAATCAAGGGTATTTT
*
90183677 AGCAATTTTACAGACT
66 AGCAATTTTACAAACT
* * ** *
90183693 A-GGGTATTCTAGTAATTTTGTAAATCGAGGGTA
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTA
90183726 AAACAGTAAT
Statistics
Matches: 102, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
80 27 0.26
81 72 0.71
82 3 0.03
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAATCAAGGGTATTTT
AGCAATTTTACAAACT
Found at i:90183683 original size:27 final size:27
Alignment explanation
Indices: 90183420--90183725 Score: 199
Period size: 27 Copynumber: 11.3 Consensus size: 27
90183410 TTTTATCCTA
* * * *
90183420 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** ** *
90183447 CAAAGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** *
90183474 CAATGGTATTTCCTTAATTTTTAAAAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-T
* **
90183503 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
*
90183530 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * *
90183557 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
90183583 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
*
90183610 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
**
90183638 TGAGGGTATTTCT-GTAATTTTACAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
* * *
90183665 CAAGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * **
90183691 CTAGGGTATTCTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
90183718 CGAGGGTA
1 CAAGGGTA
90183726 AAACAGTAAT
Statistics
Matches: 220, Mismatches: 49, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
26 24 0.11
27 168 0.76
28 15 0.07
29 13 0.06
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:90183745 original size:80 final size:81
Alignment explanation
Indices: 90183531--90183752 Score: 207
Period size: 81 Copynumber: 2.8 Consensus size: 81
90183521 TTTGTAAATC
* * * *** * *
90183531 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATT-TCACAAA-CCAGTGGTATT
1 AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCT-ACAAATCAAG-GGTATT
* *
90183594 TTGGTAATTTTACAAACT
64 TTAGCAATTTTACAAACT
* * * *** * *
90183612 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAATCAAGGGTATTTT
1 AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAATCAAGGGTATTTT
*
90183677 AGCAATTTTACAGACT
66 AGCAATTTTACAAACT
** *
90183693 A-GGGTATTCTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTA
1 AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAATCAAGGGTA
90183753 AAACGGTACT
Statistics
Matches: 123, Mismatches: 16, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
80 48 0.39
81 71 0.58
82 4 0.03
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (81 bp):
AGGGGTATTCTAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTACAAATCAAGGGTATTTT
AGCAATTTTACAAACT
Found at i:90183887 original size:27 final size:27
Alignment explanation
Indices: 90183704--90183879 Score: 210
Period size: 27 Copynumber: 6.5 Consensus size: 27
90183694 GGGTATTCTA
* *
90183704 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
90183731 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
90183758 GTACTTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
90183785 GTAATTCTGTAAATCAAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
90183812 GTAATTATGTAAATCG-GGGTTAAAATG
1 GTAATTCTGTAAATCGAGGG-TAAAACG
* * *
90183839 GTAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
90183866 GTAATTCTATAAAT
1 GTAATTCTGTAAAT
90183880 TGGGGGTACT
Statistics
Matches: 131, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
26 3 0.02
27 125 0.95
28 3 0.02
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:90183914 original size:27 final size:27
Alignment explanation
Indices: 90183893--90183982 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
90183883 GGGTACTTTG
*
90183893 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
90183920 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
90183947 GTATTTTTACAAA-CTAAGCGTATTTCG
1 GTAATTTTACAAATCGAAG-GTATTTCA
90183974 GTAATTTTA
1 GTAATTTTA
90183983 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.05
27 52 0.95
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:90183996 original size:27 final size:27
Alignment explanation
Indices: 90183893--90183997 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
90183883 GGGTACTTTG
* *
90183893 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
90183920 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
90183947 GTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
90183974 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
90183998 CTAAACAGGG
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
26 2 0.03
27 54 0.84
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:90186008 original size:16 final size:17
Alignment explanation
Indices: 90185987--90186019 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
90185977 TTTTCAACTC
90185987 TGTTTC-TATTTCTTTT
1 TGTTTCTTATTTCTTTT
90186003 TGTTTCTTTATTTCTTT
1 TGTTTC-TTATTTCTTT
90186020 ATTTCTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.06, C:0.12, G:0.06, T:0.76
Consensus pattern (17 bp):
TGTTTCTTATTTCTTTT
Found at i:90186018 original size:8 final size:8
Alignment explanation
Indices: 90186005--90186035 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
90185995 TTTCTTTTTG
90186005 TTTCTTTA
1 TTTCTTTA
90186013 TTTCTTTA
1 TTTCTTTA
90186021 TTTCTTTA
1 TTTCTTTA
*
90186029 ATTCTTT
1 TTTCTTT
90186036 TATACTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTCTTTA
Done.