Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 277 of 325
Found at i:90563565 original size:18 final size:18
Alignment explanation
Indices: 90563528--90563565 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
90563518 GGAAAAGGAA
* *
90563528 ACATATAAGGGTTAGGAT
1 ACATATAAGGGCTAGAAT
90563546 ACATATAAGGGCTAGAAT
1 ACATATAAGGGCTAGAAT
90563564 AC
1 AC
90563566 GCACCTAGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.24
Consensus pattern (18 bp):
ACATATAAGGGCTAGAAT
Found at i:90568036 original size:4 final size:4
Alignment explanation
Indices: 90567994--90568019 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
90567984 ATTTATTATT
90567994 ATAA ATAA ATAA ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA AT
90568020 TTATATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:90569025 original size:31 final size:31
Alignment explanation
Indices: 90568967--90569026 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
90568957 ATATGTATGA
* *
90568967 TTAAATCAAAATTAAAATTTAAAATATATTT
1 TTAAACCAAAATTAAAAATTAAAATATATTT
* * *
90568998 TTAAACCATAATTAAAAATTCACATATAT
1 TTAAACCAAAATTAAAAATTAAAATATAT
90569027 AATAACTCCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.38
Consensus pattern (31 bp):
TTAAACCAAAATTAAAAATTAAAATATATTT
Found at i:90576081 original size:26 final size:25
Alignment explanation
Indices: 90576040--90576090 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
90576030 AACTTTTGAC
90576040 AATTTAAAAATAAAAAG-TGAAAATT
1 AATTTAAAAATAAAAAGAT-AAAATT
*
90576065 AATTTAAAAAATTAAAAGATAAAATT
1 AATTT-AAAAATAAAAAGATAAAATT
90576091 TATTCTGGCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 5 0.22
26 17 0.74
27 1 0.04
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (25 bp):
AATTTAAAAATAAAAAGATAAAATT
Found at i:90588450 original size:10 final size:10
Alignment explanation
Indices: 90588435--90588472 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
90588425 TATGTTTAGT
90588435 TTTAATTAAG
1 TTTAATTAAG
90588445 TTTAATTAA-
1 TTTAATTAAG
90588454 TTTAATTAAG
1 TTTAATTAAG
*
90588464 ATTAATTAA
1 TTTAATTAA
90588473 TTACTAACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
9 9 0.35
10 17 0.65
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (10 bp):
TTTAATTAAG
Found at i:90588459 original size:19 final size:19
Alignment explanation
Indices: 90588435--90588474 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
90588425 TATGTTTAGT
*
90588435 TTTAATTAAGTTTAATTAA
1 TTTAATTAAGATTAATTAA
90588454 TTTAATTAAGATTAATTAA
1 TTTAATTAAGATTAATTAA
90588473 TT
1 TT
90588475 ACTAACCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (19 bp):
TTTAATTAAGATTAATTAA
Found at i:90589698 original size:120 final size:120
Alignment explanation
Indices: 90589538--90589865 Score: 367
Period size: 120 Copynumber: 2.7 Consensus size: 120
90589528 GTATACCAAA
* * * * **
90589538 GATATTTGTGACACAGGTTTAG-CTCGGA-TGAGTAATCTGATGTCAATTTAAAGGTTTAGACT-
1 GATACTTGGGACATAGGTTTAGCCT-GGACTG-GTAACCTGATGTCGTTTTAAAGGTTTAG-CTC
* * ** *
90589600 AAACAAGTAACCTGACATGTATATATTTTCAGCTTGGATGAGCAATTGAT-TTATCAAG
63 AAACAAGTAACCTGACATGTATATATTTTCAACTAGGACAAACAATTGATGTT-TCAAG
* *
90589658 GATACTTGGGACATAGGTTTAGCCTGGACTGGTAACCTGATGTCGTTTTAAAGATTTAGCTCGAA
1 GATACTTGGGACATAGGTTTAGCCTGGACTGGTAACCTGATGTCGTTTTAAAGGTTTAGCTCAAA
* *
90589723 CAAGTAACTTGTCATGTATATATTTTCAACTAGGACAAACAATTGATGTTTCAAG
66 CAAGTAACCTGACATGTATATATTTTCAACTAGGACAAACAATTGATGTTTCAAG
* ** * * **
90589778 AATACTTGGGACATAGGTTTAGCCTAAACTGGTAACTTGATGTCGTTTTAAAGGTTTAGTTCGGA
1 GATACTTGGGACATAGGTTTAGCCTGGACTGGTAACCTGATGTCGTTTTAAAGGTTTAGCTCAAA
* * *
90589843 CGAGTAACTTGACATGTGTATAT
66 CAAGTAACCTGACATGTATATAT
90589866 ATATTAAACT
Statistics
Matches: 179, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
119 2 0.01
120 171 0.96
121 6 0.03
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34
Consensus pattern (120 bp):
GATACTTGGGACATAGGTTTAGCCTGGACTGGTAACCTGATGTCGTTTTAAAGGTTTAGCTCAAA
CAAGTAACCTGACATGTATATATTTTCAACTAGGACAAACAATTGATGTTTCAAG
Found at i:90608245 original size:41 final size:41
Alignment explanation
Indices: 90608149--90608331 Score: 226
Period size: 41 Copynumber: 4.4 Consensus size: 41
90608139 CGTTTTACCA
* * * * * *
90608149 AAAACGCCGCTAAAA-ACAGAGCAATAGCGGCGTTTTTTTGTT
1 AAAACGCCGCTAAAAGTCGGAGCAATAGCGACG--CTTTCGGT
*
90608191 AAAACGCCGCTAAAAGTCGGAGCAATAGCTACGCTTTCGGT
1 AAAACGCCGCTAAAAGTCGGAGCAATAGCGACGCTTTCGGT
90608232 AAAACGCCGCTAAAAGTC-GAGCCAATAGCGACGCTTTCGGT
1 AAAACGCCGCTAAAAGTCGGAG-CAATAGCGACGCTTTCGGT
* * * *
90608273 AAAACGCCGCTAAAAGTCGGACCAATAGCGGCGCTTTTGGA
1 AAAACGCCGCTAAAAGTCGGAGCAATAGCGACGCTTTCGGT
90608314 AAAACGCCGCTAAAAGTC
1 AAAACGCCGCTAAAAGTC
90608332 ATATAATCCT
Statistics
Matches: 126, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
40 3 0.02
41 93 0.74
42 17 0.13
43 13 0.10
ACGTcount: A:0.33, C:0.24, G:0.23, T:0.19
Consensus pattern (41 bp):
AAAACGCCGCTAAAAGTCGGAGCAATAGCGACGCTTTCGGT
Found at i:90608577 original size:7 final size:7
Alignment explanation
Indices: 90608567--90608614 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
90608557 CAGTTTAATA
90608567 TTTAAGG
1 TTTAAGG
90608574 TTTAAGG
1 TTTAAGG
* *
90608581 TCTATGG
1 TTTAAGG
*
90608588 TTTAGGG
1 TTTAAGG
*
90608595 TTTTATGG
1 -TTTAAGG
90608603 TTTAAGG
1 TTTAAGG
90608610 TTTAA
1 TTTAA
90608615 TGACCATGGG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
7 28 0.82
8 6 0.18
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.48
Consensus pattern (7 bp):
TTTAAGG
Found at i:90608603 original size:15 final size:15
Alignment explanation
Indices: 90608567--90608612 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
90608557 CAGTTTAATA
*
90608567 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* *
90608581 TCTATGGTTTAGGGT
1 TTTATGGTTTAAGGT
90608596 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
90608611 TT
1 TT
90608613 AATGACCATG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 11 0.42
15 15 0.58
ACGTcount: A:0.20, C:0.02, G:0.28, T:0.50
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:90609205 original size:7 final size:7
Alignment explanation
Indices: 90609195--90609254 Score: 52
Period size: 7 Copynumber: 8.4 Consensus size: 7
90609185 CATTAAACCG
90609195 AAATAAA
1 AAATAAA
90609202 AAAT--A
1 AAATAAA
*
90609207 AACTCAAA
1 AAAT-AAA
*
90609215 AATTAAA
1 AAATAAA
*
90609222 AATTAAA
1 AAATAAA
90609229 AAATTAAA
1 AAA-TAAA
90609237 AAATTAAA
1 AAA-TAAA
90609245 AAATAAA
1 AAATAAA
90609252 AAA
1 AAA
90609255 CTTAAAAATT
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
5 4 0.09
7 23 0.50
8 19 0.41
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (7 bp):
AAATAAA
Found at i:90609230 original size:8 final size:8
Alignment explanation
Indices: 90609212--90609267 Score: 80
Period size: 8 Copynumber: 7.1 Consensus size: 8
90609202 AAATAAACTC
90609212 AAAAATT-
1 AAAAATTA
90609219 AAAAATTA
1 AAAAATTA
90609227 AAAAATTA
1 AAAAATTA
90609235 AAAAATTA
1 AAAAATTA
90609243 AAAAA-TA
1 AAAAATTA
90609250 AAAAACTTA
1 AAAAA-TTA
*
90609259 AAAATTTA
1 AAAAATTA
90609267 A
1 A
90609268 TATTTAATAT
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
7 14 0.31
8 25 0.56
9 6 0.13
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (8 bp):
AAAAATTA
Found at i:90609242 original size:23 final size:24
Alignment explanation
Indices: 90609212--90609267 Score: 87
Period size: 23 Copynumber: 2.4 Consensus size: 24
90609202 AAATAAACTC
*
90609212 AAAAATTAAAAATTAAAAAA-TTA
1 AAAAATTAAAAAATAAAAAACTTA
90609235 AAAAATTAAAAAATAAAAAACTTA
1 AAAAATTAAAAAATAAAAAACTTA
*
90609259 AAAATTTAA
1 AAAAATTAA
90609268 TATTTAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 19 0.63
24 11 0.37
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (24 bp):
AAAAATTAAAAAATAAAAAACTTA
Found at i:90614422 original size:19 final size:21
Alignment explanation
Indices: 90614394--90614442 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
90614384 TTATTATTTA
90614394 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTTGATTCTAATAT
* *
90614414 TTTTA-TTTTTATTTTAATATT
1 TTTTAGTTTTGATTCTAATA-T
90614435 TTTTAGTT
1 TTTTAGTT
90614443 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 10 0.42
20 6 0.25
21 6 0.25
22 2 0.08
ACGTcount: A:0.22, C:0.02, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTCTAATAT
Found at i:90614423 original size:20 final size:20
Alignment explanation
Indices: 90614394--90614442 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
90614384 TTATTATTTA
90614394 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTT-ATTCTAATAT
* *
90614414 TTTTATTTTTATTTTAATATT
1 TTTTAGTTTTATTCTAATA-T
90614435 TTTTAGTT
1 TTTTAGTT
90614443 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 6 0.25
20 10 0.42
21 8 0.33
ACGTcount: A:0.22, C:0.02, G:0.06, T:0.69
Consensus pattern (20 bp):
TTTTAGTTTTATTCTAATAT
Found at i:90621226 original size:21 final size:21
Alignment explanation
Indices: 90621182--90621265 Score: 105
Period size: 21 Copynumber: 4.0 Consensus size: 21
90621172 ACGAGCTGCT
* ** *
90621182 CACACGGGCATGTGTCCCCGC
1 CACACGGGCGTGTGTGGCCTC
* *
90621203 CACATGGGCGTGCGTGGCCTC
1 CACACGGGCGTGTGTGGCCTC
*
90621224 CACACAGGCGTGTGTGGCCTC
1 CACACGGGCGTGTGTGGCCTC
90621245 CACACGGGCGTGTGTGGCCTC
1 CACACGGGCGTGTGTGGCCTC
90621266 TACATGAGCG
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.12, C:0.36, G:0.35, T:0.18
Consensus pattern (21 bp):
CACACGGGCGTGTGTGGCCTC
Found at i:90621276 original size:21 final size:21
Alignment explanation
Indices: 90621202--90621278 Score: 84
Period size: 21 Copynumber: 3.7 Consensus size: 21
90621192 TGTGTCCCCG
* *
90621202 CCACATGGGCGTGCGTGGCCT
1 CCACATGAGCGTGTGTGGCCT
*
90621223 CCACA-CAGGCGTGTGTGGCCT
1 CCACATGA-GCGTGTGTGGCCT
* *
90621244 CCACACGGGCGTGTGTGGCCT
1 CCACATGAGCGTGTGTGGCCT
*
90621265 CTACATGAGCGTGT
1 CCACATGAGCGTGT
90621279 AGACCCCTAC
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.13, C:0.31, G:0.35, T:0.21
Consensus pattern (21 bp):
CCACATGAGCGTGTGTGGCCT
Found at i:90629436 original size:25 final size:26
Alignment explanation
Indices: 90629402--90629452 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
90629392 TTAGAGAAAT
90629402 GGACTAAGTGATC-TTTAATGCAAAA
1 GGACTAAGTGATCTTTTAATGCAAAA
90629427 GGACTAAGTGATCTTTTAATGCAAAA
1 GGACTAAGTGATCTTTTAATGCAAAA
90629453 CTGAATTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (26 bp):
GGACTAAGTGATCTTTTAATGCAAAA
Found at i:90630143 original size:20 final size:19
Alignment explanation
Indices: 90630114--90630151 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
90630104 AAAGTAGTCT
*
90630114 AATTTATTTTCTTAGAATA
1 AATTTATTTTCTGAGAATA
90630133 AATTCTATTTTCTGAGAAT
1 AATT-TATTTTCTGAGAAT
90630152 TACAATTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.34, C:0.08, G:0.08, T:0.50
Consensus pattern (19 bp):
AATTTATTTTCTGAGAATA
Found at i:90638578 original size:55 final size:55
Alignment explanation
Indices: 90638513--90638655 Score: 169
Period size: 55 Copynumber: 2.6 Consensus size: 55
90638503 ATGAAGGGAT
* ** *
90638513 ACGCCCGTGTTGTTTTGGTAGGTTCACCCACGATTGCTTGGCACGGGCATGTCGC
1 ACGCCCGTGTTGTTTTGGCAGGTTCACCCACGATTGCAAGGCACGAGCATGTCGC
* ** * * * * *
90638568 ACGCTCGTGTTAATTTGACAGGTTCAGCCACGGTTTCAAGGCACGAGCGTGTCGC
1 ACGCCCGTGTTGTTTTGGCAGGTTCACCCACGATTGCAAGGCACGAGCATGTCGC
*
90638623 ACGCCCATGTTGTTTTGGCAGGTTCACCCACGA
1 ACGCCCGTGTTGTTTTGGCAGGTTCACCCACGA
90638656 CCATGTCGCA
Statistics
Matches: 69, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
55 69 1.00
ACGTcount: A:0.17, C:0.27, G:0.29, T:0.27
Consensus pattern (55 bp):
ACGCCCGTGTTGTTTTGGCAGGTTCACCCACGATTGCAAGGCACGAGCATGTCGC
Found at i:90639971 original size:215 final size:215
Alignment explanation
Indices: 90639600--90640032 Score: 785
Period size: 215 Copynumber: 2.0 Consensus size: 215
90639590 AATCTTATAT
90639600 TTTTGTCTGCTAATTGAATGCTCATCCTAGTCTGTTTGGGTTTCCCAAGACCTAGTTGTTTAAAC
1 TTTTGTCTGCTAATTGAATGCTCATCCTAGTCTGTTTGGGTTTCCCAAGACCTAGTTGTTTAAAC
* *
90639665 ATTTTGTAAGGCATGACGTTAATACTAGTCCCTAAATCAGCTAGTGCATTATTAACTTCTAAACT
66 ATTTTGTAAGGCATGACGTTAATACTAGTCCCTAAATCAGCTAATGCATTATTAACATCTAAACT
*
90639730 ACCAATTAAGCAAGGAATTGTAAAACTCCCTAGATCTTTGAATTTGTTGGGTACTTTATTCTGTA
131 ACCAATTAAGCAAGGAATTGTAAAACTCCCTAGATCTTTCAATTTGTTGGGTACTTTATTCTGTA
*
90639795 GAATAGCAGAGCAAACTGCG
196 GAATAGCAGAGCAAACCGCG
*
90639815 TTTTGTCTGCTAATTGAATGCTCATCCTAGTCTGTTTGGGTTTCCCAAGACCTAGTTGTTTCAAC
1 TTTTGTCTGCTAATTGAATGCTCATCCTAGTCTGTTTGGGTTTCCCAAGACCTAGTTGTTTAAAC
*
90639880 ATTTTGTAAGGCATGATGTTAATACTAGTCCCTAAATCAGCTAATGCATTATTAACATCTAAACT
66 ATTTTGTAAGGCATGACGTTAATACTAGTCCCTAAATCAGCTAATGCATTATTAACATCTAAACT
* * *
90639945 ACCAATTAAGTAAGGAATTGTAAAACTCCCTGGATCTTTCAATTTGTTGGGTAGTTTATTCTGTA
131 ACCAATTAAGCAAGGAATTGTAAAACTCCCTAGATCTTTCAATTTGTTGGGTACTTTATTCTGTA
90640010 GAATAGCAGAGCAAACCGCG
196 GAATAGCAGAGCAAACCGCG
90640030 TTT
1 TTT
90640033 AGCTTCACAT
Statistics
Matches: 209, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
215 209 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (215 bp):
TTTTGTCTGCTAATTGAATGCTCATCCTAGTCTGTTTGGGTTTCCCAAGACCTAGTTGTTTAAAC
ATTTTGTAAGGCATGACGTTAATACTAGTCCCTAAATCAGCTAATGCATTATTAACATCTAAACT
ACCAATTAAGCAAGGAATTGTAAAACTCCCTAGATCTTTCAATTTGTTGGGTACTTTATTCTGTA
GAATAGCAGAGCAAACCGCG
Found at i:90641831 original size:19 final size:19
Alignment explanation
Indices: 90641794--90641831 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
90641784 ACCTACCAGA
*
90641794 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
90641813 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
90641832 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:90644400 original size:82 final size:82
Alignment explanation
Indices: 90644263--90644427 Score: 303
Period size: 82 Copynumber: 2.0 Consensus size: 82
90644253 ACAATTTTAG
*
90644263 GGAATCATGACTGCGGACCCAAATCAACTTTTAAAGTGTTTCTTACAAATTTGCGATACATTCAA
1 GGAATCATGACTGCGGACCCAAATCAACATTTAAAGTGTTTCTTACAAATTTGCGATACATTCAA
*
90644328 ATTTAATAGTGCCACTA
66 ATTTAATAGAGCCACTA
90644345 GGAATCATGACTGCGGACCCAAATCAACATTTAAAGTGTTTCTTACAAATTTGCGATACATTCAA
1 GGAATCATGACTGCGGACCCAAATCAACATTTAAAGTGTTTCTTACAAATTTGCGATACATTCAA
*
90644410 ATTTAATAGAGTCACTA
66 ATTTAATAGAGCCACTA
90644427 G
1 G
90644428 TGACACTATT
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (82 bp):
GGAATCATGACTGCGGACCCAAATCAACATTTAAAGTGTTTCTTACAAATTTGCGATACATTCAA
ATTTAATAGAGCCACTA
Found at i:90647347 original size:9 final size:9
Alignment explanation
Indices: 90647333--90647434 Score: 118
Period size: 9 Copynumber: 11.4 Consensus size: 9
90647323 TGTGGTTAAA
90647333 AATTAACCG
1 AATTAACCG
*
90647342 AATTAAACG
1 AATTAACCG
*
90647351 AGTTAACCG
1 AATTAACCG
90647360 AATTAACCG
1 AATTAACCG
90647369 AATTAACC-
1 AATTAACCG
90647377 AGATTAACCG
1 A-ATTAACCG
* *
90647387 GATTAATCG
1 AATTAACCG
* *
90647396 GATTAACTG
1 AATTAACCG
90647405 AATTAACCG
1 AATTAACCG
90647414 AATTAACCG
1 AATTAACCG
*
90647423 AA-TACCCG
1 AATTAACCG
90647431 AATT
1 AATT
90647435 GAATCACTAC
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
8 8 0.10
9 71 0.90
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:90647484 original size:20 final size:20
Alignment explanation
Indices: 90647434--90647522 Score: 73
Period size: 17 Copynumber: 4.8 Consensus size: 20
90647424 ATACCCGAAT
90647434 TGAATCACTACATAA-T-TA
1 TGAATCACTACATAAGTCTA
* * * *
90647452 -AAAACATTACATAAGTCTT
1 TGAATCACTACATAAGTCTA
90647471 TGAATCACTACATAA-T-TA
1 TGAATCACTACATAAGTCTA
** *
90647489 AAAAT-ATTACATAAGTCTA
1 TGAATCACTACATAAGTCTA
90647508 TGAATCACTACATAA
1 TGAATCACTACATAA
90647523 TTAAAAACAT
Statistics
Matches: 51, Mismatches: 14, Indels: 10
0.68 0.19 0.13
Matches are distributed among these distances:
17 19 0.37
18 6 0.12
19 7 0.14
20 19 0.37
ACGTcount: A:0.47, C:0.16, G:0.06, T:0.31
Consensus pattern (20 bp):
TGAATCACTACATAAGTCTA
Found at i:90647564 original size:72 final size:72
Alignment explanation
Indices: 90647433--90647582 Score: 266
Period size: 72 Copynumber: 2.1 Consensus size: 72
90647423 AATACCCGAA
*
90647433 TTGAATCACTACATAATTAAAAACATTACATAAGTCTTTGAATCACTACATAATTAAAAATATTA
1 TTGAATCACTACATAATTAAAAACATTACA-AAGTCTTTGAATCACTACATAATTAAAAACATTA
90647498 CATAAGTC
65 CATAAGTC
90647506 TATGAATCACTACATAATTAAAAACATTAC-AAGTCTTTGAATCACTACATAATTAAAAACATTA
1 T-TGAATCACTACATAATTAAAAACATTACAAAGTCTTTGAATCACTACATAATTAAAAACATTA
90647570 CATAAGTC
65 CATAAGTC
90647578 TTGAA
1 TTGAA
90647583 ATTAACACAT
Statistics
Matches: 75, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
71 4 0.05
72 42 0.56
73 1 0.01
74 28 0.37
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (72 bp):
TTGAATCACTACATAATTAAAAACATTACAAAGTCTTTGAATCACTACATAATTAAAAACATTAC
ATAAGTC
Found at i:90647596 original size:37 final size:37
Alignment explanation
Indices: 90647433--90647579 Score: 262
Period size: 37 Copynumber: 4.0 Consensus size: 37
90647423 AATACCCGAA
90647433 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
90647470 TTGAATCACTACATAATTAAAAATATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
90647507 ATGAATCACTACATAATTAAAAACATTAC--AAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
90647542 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
90647579 T
1 T
90647580 GAAATTAACA
Statistics
Matches: 104, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
35 34 0.33
37 70 0.67
ACGTcount: A:0.46, C:0.16, G:0.05, T:0.33
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:90650033 original size:21 final size:21
Alignment explanation
Indices: 90650004--90650062 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
90649994 ACAAGAAAAA
90650004 AATTATATAATAAATTAAAATAC
1 AATT-TATAAT-AATTAAAATAC
90650027 -ATTTATAAT-ATTAAAATAC
1 AATTTATAATAATTAAAATAC
90650046 ATATTTATAAT-ATTAAA
1 A-ATTTATAATAATTAAA
90650063 CAATTTTCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.29
21 21 0.62
22 3 0.09
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (21 bp):
AATTTATAATAATTAAAATAC
Found at i:90650039 original size:19 final size:20
Alignment explanation
Indices: 90650013--90650062 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 20
90650003 AAATTATATA
90650013 ATAA-ATTAAAATAC-ATTT
1 ATAATATTAAAATACAATTT
90650031 ATAATATTAAAATACATATTT
1 ATAATATTAAAATACA-ATTT
90650052 ATAATATTAAA
1 ATAATATTAAA
90650063 CAATTTTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.14
19 10 0.34
21 15 0.52
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (20 bp):
ATAATATTAAAATACAATTT
Found at i:90650130 original size:12 final size:11
Alignment explanation
Indices: 90650110--90650143 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
90650100 AGAATACTTG
90650110 TTAAATAAAAT
1 TTAAATAAAAT
*
90650121 TTATAATAAAAA
1 TTA-AATAAAAT
90650133 TTAAATAAAAT
1 TTAAATAAAAT
90650144 ATTGGTACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TTAAATAAAAT
Found at i:90650703 original size:14 final size:14
Alignment explanation
Indices: 90650684--90650713 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
90650674 TTACTTTTAG
90650684 TAGATTTTTACTTT
1 TAGATTTTTACTTT
*
90650698 TAGATTTTTATTTT
1 TAGATTTTTACTTT
90650712 TA
1 TA
90650714 TTTATTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.03, G:0.07, T:0.67
Consensus pattern (14 bp):
TAGATTTTTACTTT
Found at i:90656879 original size:31 final size:31
Alignment explanation
Indices: 90656841--90656937 Score: 80
Period size: 31 Copynumber: 3.3 Consensus size: 31
90656831 ATGGATTAAC
90656841 TTTTAATTTTTTTCTCGGTTTAATAGAAGTA
1 TTTTAATTTTTTTCTCGGTTTAATAGAAGTA
** * * * *
90656872 TTTTAA-TTGGTTAT---ATT-AT-GGATTAA
1 TTTTAATTTTTTTCTCGGTTTAATAGAAGT-A
90656898 CTTTTAATTTTTTTCTCGGTTTAATAGAAGTA
1 -TTTTAATTTTTTTCTCGGTTTAATAGAAGTA
90656930 TTTTAATT
1 TTTTAATT
90656938 GGTTACATTA
Statistics
Matches: 46, Mismatches: 12, Indels: 16
0.62 0.16 0.22
Matches are distributed among these distances:
25 3 0.07
26 3 0.07
27 8 0.17
28 5 0.11
30 5 0.11
31 16 0.35
32 3 0.07
33 3 0.07
ACGTcount: A:0.27, C:0.05, G:0.12, T:0.56
Consensus pattern (31 bp):
TTTTAATTTTTTTCTCGGTTTAATAGAAGTA
Found at i:90656879 original size:95 final size:96
Alignment explanation
Indices: 90656654--90656895 Score: 221
Period size: 94 Copynumber: 2.6 Consensus size: 96
90656644 AATTCTTTTC
* * *
90656654 TAATTTTTTTCTCGGTTTAATAAAATTATTGACTTTTAATTGGTTATATTATGGATTGATAGCAT
1 TAATTTTTTTCTCGGTTTAATAAAAGTATTTAATTTTAATTGGTTATATTATGGATTGATAGCAT
* *
90656719 CAATACACTGACACAATTATGGGTTGACCTT
66 CAATACACTGACACAATTATGGATTAACCTT
* * ** ** *** ** *
90656750 TGATTTTTTTTTCTAATTTTTTCCTAG-AAGTAATTTT-ATTGGTTATATTATGGATTGATAGTA
1 TAATTTTTTTCTC-GGTTTAATAAAAGTATTTAATTTTAATTGGTTATATTATGGATTGATAGCA
*** *
90656813 T-AATACACTGTTGCAATTATGGATTAACTTT
65 TCAATACACTGACACAATTATGGATTAACCTT
*
90656844 TAATTTTTTTCTCGGTTTAATAGAAG----T-ATTTTAATTGGTTATATTATGGATT
1 TAATTTTTTTCTCGGTTTAATAAAAGTATTTAATTTTAATTGGTTATATTATGGATT
90656896 AACTTTTAAT
Statistics
Matches: 114, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
89 5 0.04
90 20 0.18
93 6 0.05
94 35 0.31
95 26 0.23
96 17 0.15
97 5 0.04
ACGTcount: A:0.29, C:0.08, G:0.14, T:0.49
Consensus pattern (96 bp):
TAATTTTTTTCTCGGTTTAATAAAAGTATTTAATTTTAATTGGTTATATTATGGATTGATAGCAT
CAATACACTGACACAATTATGGATTAACCTT
Found at i:90656893 original size:58 final size:58
Alignment explanation
Indices: 90656828--90656978 Score: 266
Period size: 58 Copynumber: 2.6 Consensus size: 58
90656818 CACTGTTGCA
*
90656828 ATTATGGATTAACTTTTAATTTTTTTCTCGGTTTAATAGAAGTATTTTAATTGGTTAT
1 ATTATGGATTAACTTTTAATTTTTTTCTCGGTTTAATAGAAGTATTTTAATTGGTTAC
90656886 ATTATGGATTAACTTTTAATTTTTTTCTCGGTTTAATAGAAGTATTTTAATTGGTTAC
1 ATTATGGATTAACTTTTAATTTTTTTCTCGGTTTAATAGAAGTATTTTAATTGGTTAC
* * *
90656944 ATTATTGATTGACTTTTAATTTTTTTCTCGATTTA
1 ATTATGGATTAACTTTTAATTTTTTTCTCGGTTTA
90656979 GATAACATGA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 89 1.00
ACGTcount: A:0.26, C:0.07, G:0.13, T:0.54
Consensus pattern (58 bp):
ATTATGGATTAACTTTTAATTTTTTTCTCGGTTTAATAGAAGTATTTTAATTGGTTAC
Found at i:90657927 original size:25 final size:26
Alignment explanation
Indices: 90657876--90657927 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
90657866 TTATTATTAT
*
90657876 TTTTATTAAAATATATTTAACAATAA
1 TTTTATTAAAATATATATAACAATAA
*
90657902 TTTTATTAAAATTTA-ATAACAATAA
1 TTTTATTAAAATATATATAACAATAA
90657927 T
1 T
90657928 CATCCACGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (26 bp):
TTTTATTAAAATATATATAACAATAA
Found at i:90663983 original size:22 final size:22
Alignment explanation
Indices: 90663921--90664061 Score: 77
Period size: 25 Copynumber: 6.0 Consensus size: 22
90663911 CATTAATGAA
* *
90663921 CAGAGAACACTGAAGTGCT-AT
1 CAGAGAGCACTGACGTGCTAAT
** **
90663942 ACAGAGAGCACAAATATGCTAAT
1 -CAGAGAGCACTGACGTGCTAAT
90663965 CAGAGAGCACTGACGTGCTAAATAT
1 CAGAGAGCACTGACGTGCT--A-AT
* *
90663990 CAGAAAGCACTGGCGTGCTAATAAT
1 CAGAGAGCACTGACGTGC---TAAT
* *
90664015 CAGAAAGCACTGGCGTGCTAATATT
1 CAGAGAGCACTGACGTGCT-A-A-T
* *
90664040 CAAAGAGCACTGGCGTGCTAAT
1 CAGAGAGCACTGACGTGCTAAT
90664062 ATTCAGAGAG
Statistics
Matches: 96, Mismatches: 13, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
22 31 0.32
23 4 0.04
24 3 0.03
25 56 0.58
26 1 0.01
28 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (22 bp):
CAGAGAGCACTGACGTGCTAAT
Found at i:90663998 original size:25 final size:24
Alignment explanation
Indices: 90663963--90664073 Score: 143
Period size: 25 Copynumber: 4.5 Consensus size: 24
90663953 AAATATGCTA
* *
90663963 ATCAGAGAGCACTGACGTGCTAAAT
1 ATCAGAAAGCACTGGCGTGCT-AAT
90663988 ATCAGAAAGCACTGGCGTGCTAAT
1 ATCAGAAAGCACTGGCGTGCTAAT
90664012 AATCAGAAAGCACTGGCGTGCTAAT
1 -ATCAGAAAGCACTGGCGTGCTAAT
90664037 ATTCA-AAGAGCACTGGCGTGCTAAT
1 A-TCAGAA-AGCACTGGCGTGCTAAT
*
90664062 ATTCAGAGAGCA
1 A-TCAGAAAGCA
90664074 TGCTGAGGTC
Statistics
Matches: 79, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
24 6 0.08
25 72 0.91
26 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (24 bp):
ATCAGAAAGCACTGGCGTGCTAAT
Found at i:90664024 original size:50 final size:50
Alignment explanation
Indices: 90663961--90664073 Score: 167
Period size: 50 Copynumber: 2.3 Consensus size: 50
90663951 ACAAATATGC
90663961 TAATCAGAGAGCACTGACGTGCTAA-ATATCAGAA-AGCACTGGCGTGCTAA
1 TAATCAGAGAGCACTGACGTGCTAATAT-TCA-AAGAGCACTGGCGTGCTAA
* *
90664011 TAATCAGAAAGCACTGGCGTGCTAATATTCAAAGAGCACTGGCGTGCTAA
1 TAATCAGAGAGCACTGACGTGCTAATATTCAAAGAGCACTGGCGTGCTAA
*
90664061 TATTCAGAGAGCA
1 TAATCAGAGAGCA
90664074 TGCTGAGGTC
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
49 2 0.04
50 53 0.93
51 2 0.04
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (50 bp):
TAATCAGAGAGCACTGACGTGCTAATATTCAAAGAGCACTGGCGTGCTAA
Found at i:90665989 original size:49 final size:49
Alignment explanation
Indices: 90665931--90666028 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
90665921 AATTTCACAG
*
90665931 GTCATACAATTCAGTCCTTGCTCAATTAGACCATCTATTAAGCTAATTT
1 GTCATACAATTCAGTCCTTACTCAATTAGACCATCTATTAAGCTAATTT
90665980 GTCATACAATTCAGTCCTTACTCAATTAGACCATCTATTAAGCTAATTT
1 GTCATACAATTCAGTCCTTACTCAATTAGACCATCTATTAAGCTAATTT
90666029 TTCTCAATTA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (49 bp):
GTCATACAATTCAGTCCTTACTCAATTAGACCATCTATTAAGCTAATTT
Found at i:90672496 original size:43 final size:43
Alignment explanation
Indices: 90672449--90672539 Score: 146
Period size: 43 Copynumber: 2.1 Consensus size: 43
90672439 ATGTGTCTCA
* *
90672449 GCCGTATGAAGGACACGGTCATAGGACACGGGCGTGTACCTTG
1 GCCGTATGAAGGACACGATCATAGGACACGAGCGTGTACCTTG
* *
90672492 GCCGTATGAAGGACACGATCATAGGACATGAGCGTGTGCCTTG
1 GCCGTATGAAGGACACGATCATAGGACACGAGCGTGTACCTTG
90672535 GCCGT
1 GCCGT
90672540 GTAGCTTCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.23, C:0.23, G:0.34, T:0.20
Consensus pattern (43 bp):
GCCGTATGAAGGACACGATCATAGGACACGAGCGTGTACCTTG
Found at i:90673659 original size:46 final size:45
Alignment explanation
Indices: 90673543--90673809 Score: 166
Period size: 46 Copynumber: 5.7 Consensus size: 45
90673533 TGATATGTAT
* * * *
90673543 GCCAGTGTAAGACATGTCTGGGACATGCATCAGTCTCGAGATATCTG-T
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGC-C-ACAT-TGTGAA
* *
90673591 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTGTGAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGTG-AA
* * *
90673637 GCCAGTGTAAGACATGTCTGGGACATACAT-TG--ACTTTGAGATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATT--G-TGA-A
** * * *
90673683 GCCAGTGTAAGACATGTCTGGGACATGCATCAACCTTGAGATAGTG-T
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC---ACATTGTGAA
* * * * *
90673730 GCTAGTGTAATACATGTCTAGGACATGCATCAGCCACATCGTGAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGTG-AA
* * *
90673776 ACTATTGTAAGACCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
90673810 ACTTGATATG
Statistics
Matches: 173, Mismatches: 30, Indels: 32
0.74 0.13 0.14
Matches are distributed among these distances:
43 4 0.02
44 9 0.05
45 6 0.03
46 69 0.40
47 46 0.27
48 34 0.20
49 2 0.01
50 1 0.01
52 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGTGAA
Found at i:90673801 original size:140 final size:140
Alignment explanation
Indices: 90673543--90673802 Score: 396
Period size: 140 Copynumber: 1.9 Consensus size: 140
90673533 TGATATGTAT
**
90673543 GCCAGTGTAAGACATGTCTGGGACATGCATCAGTCTCGAGATATCTGTGCTAGTGTAAGACATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGATATCTGTGCTAGTGTAAGACATGT
* * * * *
90673608 TTGGGACATGCATCGGCCACATTGTGAAAGCCAGTGTAAGACATGTCTGGGACATACATTGACTT
66 CTAGGACATGCATCAGCCACATCGTGAAAACCAGTGTAAGACATGTCTGGGACATACATTGACTT
90673673 TGAGATGAGA
131 TGAGATGAGA
* * *
90673683 GCCAGTGTAAGACATGTCTGGGACATGCATCAACCTTGAGATA-GTGTGCTAGTGTAATACATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGATATCTGTGCTAGTGTAAGACATGT
* *
90673747 CTAGGACATGCATCAGCCACATCGTGAAAACTATTGTAAGACCATGTCTGGGACAT
66 CTAGGACATGCATCAGCCACATCGTGAAAACCAGTGTAAGA-CATGTCTGGGACAT
90673803 GGCATCGACT
Statistics
Matches: 107, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
139 53 0.50
140 54 0.50
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (140 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGATATCTGTGCTAGTGTAAGACATGT
CTAGGACATGCATCAGCCACATCGTGAAAACCAGTGTAAGACATGTCTGGGACATACATTGACTT
TGAGATGAGA
Found at i:90673852 original size:139 final size:139
Alignment explanation
Indices: 90673543--90673845 Score: 387
Period size: 140 Copynumber: 2.2 Consensus size: 139
90673533 TGATATGTAT
**
90673543 GCCAGTGTAAGACATGTCTGGGACATGCATCAGTCTCGAGATATCTGTGCTAGTGTAAGACATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGATATCTGTGCTAGTGTAAGACATGT
* * * * * *
90673608 TTGGGACATGCATCGGCCACATTGTGAAAGCCAGTGTAAGACATGTCTGGGACATACATTGACTT
66 CTAGGACATGCATCAGCCACATCGTGAAAACCAGTGTAAGACATGTCTGGGACATACATCGACTT
90673673 TGAGATGAGA
131 TGAGAT-AGA
* * *
90673683 GCCAGTGTAAGACATGTCTGGGACATGCATCAACCTTGAGATA-GTGTGCTAGTGTAATACATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGATATCTGTGCTAGTGTAAGACATGT
* * *
90673747 CTAGGACATGCATCAGCCACATCGTGAAAACTATTGTAAGACCATGTCTGGGACATGGCATCGAC
66 CTAGGACATGCATCAGCCACATCGTGAAAACCAGTGTAAGA-CATGTCTGGGACAT-ACATCGAC
* *
90673812 -TTGATAT-GT
129 TTTGAGATAGA
* * *
90673821 GTCAGTGTAAGACCTGTCCGGGACA
1 GCCAGTGTAAGACATGTCTGGGACA
90673846 CAGCATCGAC
Statistics
Matches: 142, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
138 23 0.16
139 53 0.37
140 60 0.42
141 6 0.04
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (139 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGATATCTGTGCTAGTGTAAGACATGT
CTAGGACATGCATCAGCCACATCGTGAAAACCAGTGTAAGACATGTCTGGGACATACATCGACTT
TGAGATAGA
Found at i:90683637 original size:36 final size:36
Alignment explanation
Indices: 90683597--90683669 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
90683587 TTAATTCTAG
90683597 AATAGATAAAATTCAAGGGATTAAATTAGAAATTAT
1 AATAGATAAAATTCAAGGGATTAAATTAGAAATTAT
90683633 AATAGATAAAATTCAAGGGATTAAATTAGAAATTAT
1 AATAGATAAAATTCAAGGGATTAAATTAGAAATTAT
90683669 A
1 A
90683670 CGATAAGGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.53, C:0.03, G:0.14, T:0.30
Consensus pattern (36 bp):
AATAGATAAAATTCAAGGGATTAAATTAGAAATTAT
Found at i:90687013 original size:46 final size:46
Alignment explanation
Indices: 90686946--90687073 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
90686936 TGTAACCCGC
* * *
90686946 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
90686992 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
90687038 CCATAAGTGAACTCGGACTCAAC-CAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
90687074 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
45 13 0.16
46 66 0.84
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:90693483 original size:161 final size:162
Alignment explanation
Indices: 90693218--90693544 Score: 620
Period size: 161 Copynumber: 2.0 Consensus size: 162
90693208 AGTTTAACAT
90693218 TTTTAGAACTTTGGATTATTGTTTCTACATTCACAGCTTTTAAGCTACTTGCGTCACAGTCACAA
1 TTTTAGAACTTTGGATTATTGTTTCTACATTCACAGCTTTTAAGCTACTTGCGTCACAGTCACAA
*
90693283 GAAAAATCATATATCGAGTTAAGAAACTTGAAATCAAGATCCGTAAATTTTCCCTGAATATAGAC
66 GAAAAATCATATATCGAGTTAAGAAACTTGAAATCAAGATCCGTAAAATTTCCCTGAATATAGAC
90693348 TCATATACCTATCTACTAA-TTGTTTCTACAA
131 TCATATACCTATCTACTAATTTGTTTCTACAA
90693379 TTTTAGAACTTTGGATTATTGTTTCTACATTCACAGCTTTTAAGCTACTTGCGTCACAGTCACAA
1 TTTTAGAACTTTGGATTATTGTTTCTACATTCACAGCTTTTAAGCTACTTGCGTCACAGTCACAA
90693444 GAAAAATCATATATCGAGTTAAGAAACTTGAAATCAAGATCCGTAAAATTTCCCTGAATATAGAC
66 GAAAAATCATATATCGAGTTAAGAAACTTGAAATCAAGATCCGTAAAATTTCCCTGAATATAGAC
* *
90693509 TCATATACCTATCTACTAATTTTTTTCTAGAA
131 TCATATACCTATCTACTAATTTGTTTCTACAA
90693541 TTTT
1 TTTT
90693545 TGGTCAGGCC
Statistics
Matches: 162, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
161 148 0.91
162 14 0.09
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (162 bp):
TTTTAGAACTTTGGATTATTGTTTCTACATTCACAGCTTTTAAGCTACTTGCGTCACAGTCACAA
GAAAAATCATATATCGAGTTAAGAAACTTGAAATCAAGATCCGTAAAATTTCCCTGAATATAGAC
TCATATACCTATCTACTAATTTGTTTCTACAA
Found at i:90694682 original size:46 final size:46
Alignment explanation
Indices: 90694615--90694789 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
90694605 TGTAACCCGC
*
90694615 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * *
90694661 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
90694711 -C-TCA-CGAACTCGGACTCAACTCACCGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
**
90694754 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
90694790 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 60 0.57
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:90694751 original size:93 final size:93
Alignment explanation
Indices: 90694622--90694793 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
90694612 CGCCCATAAG
* * * *
90694622 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTTA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
90694687 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
90694715 CGAACTCGGACTCAACTCACCGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
90694780 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
90694794 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:90702200 original size:19 final size:17
Alignment explanation
Indices: 90702175--90702214 Score: 53
Period size: 20 Copynumber: 2.2 Consensus size: 17
90702165 GGAATTTTTT
90702175 AAAAAAAATAGGTGAAATAG
1 AAAAAAAA-A-GTGAAA-AG
90702195 AAAAAAAAAGTGAAAAG
1 AAAAAAAAAGTGAAAAG
90702212 AAA
1 AAA
90702215 CAGTTGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 6 0.30
19 1 0.05
20 8 0.40
ACGTcount: A:0.72, C:0.00, G:0.17, T:0.10
Consensus pattern (17 bp):
AAAAAAAAAGTGAAAAG
Found at i:90702748 original size:12 final size:12
Alignment explanation
Indices: 90702731--90702756 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
90702721 GTCATTTTTG
90702731 TTTTTTATTTCT
1 TTTTTTATTTCT
90702743 TTTTTTATTTCT
1 TTTTTTATTTCT
90702755 TT
1 TT
90702757 CCCTTCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTATTTCT
Found at i:90704026 original size:31 final size:30
Alignment explanation
Indices: 90703989--90704051 Score: 99
Period size: 31 Copynumber: 2.1 Consensus size: 30
90703979 CTTAACAAGT
*
90703989 AAATGCTTCTAAAATAATAATAATAATTAAC
1 AAATGCTTCTAAAATAATAAGAA-AATTAAC
*
90704020 AAATGCTTTTAAAATAATAAGAAAATTAAC
1 AAATGCTTCTAAAATAATAAGAAAATTAAC
90704050 AA
1 AA
90704052 TAAAATAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 9 0.30
31 21 0.70
ACGTcount: A:0.57, C:0.08, G:0.05, T:0.30
Consensus pattern (30 bp):
AAATGCTTCTAAAATAATAAGAAAATTAAC
Found at i:90709640 original size:11 final size:11
Alignment explanation
Indices: 90709624--90709653 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
90709614 GGAAAGAAAT
90709624 ATATAATAAGA
1 ATATAATAAGA
90709635 ATATAATAAGA
1 ATATAATAAGA
*
90709646 ATCTAATA
1 ATATAATA
90709654 GCTTTACATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (11 bp):
ATATAATAAGA
Found at i:90723865 original size:15 final size:16
Alignment explanation
Indices: 90723845--90723874 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90723835 GCTATGATAT
90723845 ATGAAA-TTTTTAAGA
1 ATGAAAGTTTTTAAGA
90723860 ATGAAAGTTTTTAAG
1 ATGAAAGTTTTTAAG
90723875 TTATGGTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (16 bp):
ATGAAAGTTTTTAAGA
Found at i:90726870 original size:3 final size:3
Alignment explanation
Indices: 90726862--90726889 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
90726852 ATAATATATA
90726862 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
90726890 ACAGAACTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:90731322 original size:807 final size:807
Alignment explanation
Indices: 90729769--90731387 Score: 3024
Period size: 807 Copynumber: 2.0 Consensus size: 807
90729759 GCCAACCAGT
*
90729769 GTTCTAATCTTTGATTAAATTAGGGAAATACATTAGGGTGTGATGTAGACCTACCGACGAATTTG
1 GTTCTAATCTTCGATTAAATTAGGGAAATACATTAGGGTGTGATGTAGACCTACCGACGAATTTG
90729834 GTCTTCAAACAGAGTGGTCCGCACCAAGCAAGGATATGTGTTCATTTAAGCGAAGCATTACAACA
66 GTCTTCAAACAGAGTGGTCCGCACCAAGCAAGGATATGTGTTCATTTAAGCGAAGCATTACAACA
*
90729899 GATAATGGTTCAACCCAACTCGAAAGGCTTCACACTAGCAGTCCCCTTTGTTGTAGAAGATGTTA
131 GATAATGGTTCAACCCAACTCGAAAGGCTTCACACTAGCAATCCCCTTTGTTGTAGAAGATGTTA
90729964 TAACCGCAAGGAATGTGCTTCGATATTGTTTGGAATGCTTTAACCCCGATAAATATAGGCGAGGT
196 TAACCGCAAGGAATGTGCTTCGATATTGTTTGGAATGCTTTAACCCCGATAAATATAGGCGAGGT
*
90730029 GACAACAGATAAGTGGCTGAAGCAGTTGGTGCAGACTTTGAAAAACAAACATGGCCCCATGTGGC
261 GACAACAGATAAGTGGCTGAAGCAGTTGGTGCAAACTTTGAAAAACAAACATGGCCCCATGTGGC
90730094 CAAAAATGATTTGAAACTAATTTCAATAATACGCAATGAGGAACCTAAGAACTTTTTTTACTGTT
326 CAAAAATGATTTGAAACTAATTTCAATAATACGCAATGAGGAACCTAAGAACTTTTTTTACTGTT
* *
90730159 TCTACAAGATTAGACTTTGCCGTTAGATCTCGGATGTCTCATTGCACAAAGAAAGTGGTACAAAT
391 TCTACAAGATTAGACTTCGCCGTTAGATCTCGGATGTCTCATTGCACAAAGAAAGTGATACAAAT
90730224 ATTAATTTGATAATTGCTCCTACTGATACTAGAATTATCGGTGGTATAGGCACAGCTCGCAATTC
456 ATTAATTTGATAATTGCTCCTACTGATACTAGAATTATCGGTGGTATAGGCACAGCTCGCAATTC
90730289 TAGAAACGACTCGAAGGAAACTACCATTTTATCCTAAGAAATTAAAGATGTTATTGACCTGCGAG
521 TAGAAACGACTCGAAGGAAACTACCATTTTATCCTAAGAAATTAAAGATGTTATTGACCTGCGAG
90730354 CTTCTCTGAGGGACATGCGTAAAAAGCACAAAACTAATGTAGAGCCTGTAAAAGTGGTTATTAGC
586 CTTCTCTGAGGGACATGCGTAAAAAGCACAAAACTAATGTAGAGCCTGTAAAAGTGGTTATTAGC
*
90730419 AGCGAATAGGAGGCAGATAGTGGAAAGCTAGAGTATCATCATAAAAGTAGGGCAAATCATGCTGG
651 AGCGAATAGGAGGCAGATAGTGGAAAGCTAGAGTATCATCATAAAAGGAGGGCAAATCATGCTGG
* * *
90730484 GCCTTCTACTGTGATAGCAGTTACTCCTACTTCTCCCTCGGTGAGCTCACCATCTATGGCTCGTA
716 GCCTTCTACTATGATAGCAGCTACTCCTACTTCTCCCCCGGTGAGCTCACCATCTATGGCTCGTA
90730549 AGAGCTCTTCGATTGCTACTCGTAGTA
781 AGAGCTCTTCGATTGCTACTCGTAGTA
* *
90730576 GTTCTAATCTTCGATTAAATTGGGGAAATACATTAGGGTGTGATGTAGACCTGCCGACGAATTTG
1 GTTCTAATCTTCGATTAAATTAGGGAAATACATTAGGGTGTGATGTAGACCTACCGACGAATTTG
* *
90730641 GTCTTCAAACAGAGTGGTCCGCACCAAGCAGGGATATGTGTTCATTTAAGCGAAGTATTACAACA
66 GTCTTCAAACAGAGTGGTCCGCACCAAGCAAGGATATGTGTTCATTTAAGCGAAGCATTACAACA
*
90730706 GATAATGGTTCAACCCAACTCGTAAGGCTTCACACTAGCAATCCCCTTTGTTGTAGAAGATGTTA
131 GATAATGGTTCAACCCAACTCGAAAGGCTTCACACTAGCAATCCCCTTTGTTGTAGAAGATGTTA
* *
90730771 TAACCGCAAGGAATGTGCTTCGATATTGTTTGGAATGCTTTAACCCCGATGAGTATAGGCGAGGT
196 TAACCGCAAGGAATGTGCTTCGATATTGTTTGGAATGCTTTAACCCCGATAAATATAGGCGAGGT
90730836 GACAACAGATAAGTGGCTGAAGCAGTTGGTGCAAACTTTGAAAAACAAACATGGCCCCATGTGGC
261 GACAACAGATAAGTGGCTGAAGCAGTTGGTGCAAACTTTGAAAAACAAACATGGCCCCATGTGGC
90730901 CAAAAATGATTTGAAACTAATTTCAATAATACGCAATGAGGAACCTAAGAACTTTTTTTACTGTT
326 CAAAAATGATTTGAAACTAATTTCAATAATACGCAATGAGGAACCTAAGAACTTTTTTTACTGTT
*
90730966 TCTACAAGATTAGACTTCGCCGTTAGATCTCGGTTGTCTCATTGCACAAAGAAAGTGATACAAAT
391 TCTACAAGATTAGACTTCGCCGTTAGATCTCGGATGTCTCATTGCACAAAGAAAGTGATACAAAT
*
90731031 ATTAATTTGATAATTGCTCCTACTGATACTAGAATTATCGGTGGTTTAGGCACAGCTCGCAATTC
456 ATTAATTTGATAATTGCTCCTACTGATACTAGAATTATCGGTGGTATAGGCACAGCTCGCAATTC
*
90731096 TAGAAGCGACTCGAAGGAAACTACCATTTTATCCTAAGAAATTAAAGATGTTATTGACCTGCGAG
521 TAGAAACGACTCGAAGGAAACTACCATTTTATCCTAAGAAATTAAAGATGTTATTGACCTGCGAG
90731161 CTTCTCTGAGGGACATGCG-AAAGAAGCACAAAACTAATGTAGAGCCTGTAAAAGTGGTTATTAG
586 CTTCTCTGAGGGACATGCGTAAA-AAGCACAAAACTAATGTAGAGCCTGTAAAAGTGGTTATTAG
*
90731225 CAGCGAATAGGAGGCAGATAGTGGAAAGCTAGAGTATCATTATAAAAGGAGGGCAAATCATGCTG
650 CAGCGAATAGGAGGCAGATAGTGGAAAGCTAGAGTATCATCATAAAAGGAGGGCAAATCATGCTG
* *
90731290 GGCCTTCTATTATGATAGCAGCTACTCCTACTTTTCCCCCGGTGAGCTCACCATCTATGGCTCGT
715 GGCCTTCTACTATGATAGCAGCTACTCCTACTTCTCCCCCGGTGAGCTCACCATCTATGGCTCGT
90731355 AAGAGCTCTTCGATTGCTACTCGTAGTA
780 AAGAGCTCTTCGATTGCTACTCGTAGTA
90731383 GTTCT
1 GTTCT
90731388 CCTCTTCATA
Statistics
Matches: 789, Mismatches: 22, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
806 3 0.00
807 786 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (807 bp):
GTTCTAATCTTCGATTAAATTAGGGAAATACATTAGGGTGTGATGTAGACCTACCGACGAATTTG
GTCTTCAAACAGAGTGGTCCGCACCAAGCAAGGATATGTGTTCATTTAAGCGAAGCATTACAACA
GATAATGGTTCAACCCAACTCGAAAGGCTTCACACTAGCAATCCCCTTTGTTGTAGAAGATGTTA
TAACCGCAAGGAATGTGCTTCGATATTGTTTGGAATGCTTTAACCCCGATAAATATAGGCGAGGT
GACAACAGATAAGTGGCTGAAGCAGTTGGTGCAAACTTTGAAAAACAAACATGGCCCCATGTGGC
CAAAAATGATTTGAAACTAATTTCAATAATACGCAATGAGGAACCTAAGAACTTTTTTTACTGTT
TCTACAAGATTAGACTTCGCCGTTAGATCTCGGATGTCTCATTGCACAAAGAAAGTGATACAAAT
ATTAATTTGATAATTGCTCCTACTGATACTAGAATTATCGGTGGTATAGGCACAGCTCGCAATTC
TAGAAACGACTCGAAGGAAACTACCATTTTATCCTAAGAAATTAAAGATGTTATTGACCTGCGAG
CTTCTCTGAGGGACATGCGTAAAAAGCACAAAACTAATGTAGAGCCTGTAAAAGTGGTTATTAGC
AGCGAATAGGAGGCAGATAGTGGAAAGCTAGAGTATCATCATAAAAGGAGGGCAAATCATGCTGG
GCCTTCTACTATGATAGCAGCTACTCCTACTTCTCCCCCGGTGAGCTCACCATCTATGGCTCGTA
AGAGCTCTTCGATTGCTACTCGTAGTA
Found at i:90732579 original size:11 final size:12
Alignment explanation
Indices: 90732552--90732576 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
90732542 AAAATTGAAC
90732552 TTAAACAAATTT
1 TTAAACAAATTT
90732564 TTAAACAAATTT
1 TTAAACAAATTT
90732576 T
1 T
90732577 AAAAAGTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TTAAACAAATTT
Found at i:90732964 original size:157 final size:157
Alignment explanation
Indices: 90732678--90732983 Score: 450
Period size: 157 Copynumber: 1.9 Consensus size: 157
90732668 AAACATTCTA
* * *
90732678 AGTTGTGAATTTTAATTAGCAAACTCAAAGGAACTTAAGCTACGATCTCAAATCAATTAAGCCTT
1 AGTTGTGAATGTTAATCAGCAAAATCAAAGGAACTTAAGCTACGATCTCAAATCAATTAAGCCTT
* * * *
90732743 AAATACCACCCAGGAGGGTAGCCTTGCTAGCTTTGTTGGATCTACGAGCTTAATTATATAAGCAC
66 AAATACCACCCAGGAGGGTAACCTTGCTAGCTGTGTTGAATCTACAAGCTTAATTATATAAGCAC
*
90732808 TTATAATGCCAGCTGAGAGTGTAGGTG
131 TTATAATGCCAGATGAGAGTGTAGGTG
* ** * *
90732835 AGTTGTGAATGTTAATCAGCAAAATCAAAGGAATTTAATTTGCGATCTTAAATCAATTAAGCCTT
1 AGTTGTGAATGTTAATCAGCAAAATCAAAGGAACTTAAGCTACGATCTCAAATCAATTAAGCCTT
* * * *
90732900 AAATACCACCCAGGAGGGTAACCTTGCTAGCTGTGTTGAATCTGCAAGCTTAATTTTGTGAGCAC
66 AAATACCACCCAGGAGGGTAACCTTGCTAGCTGTGTTGAATCTACAAGCTTAATTATATAAGCAC
*
90732965 TTATAATGTCAGATGAGAG
131 TTATAATGCCAGATGAGAG
90732984 CATAGGTCTG
Statistics
Matches: 131, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
157 131 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (157 bp):
AGTTGTGAATGTTAATCAGCAAAATCAAAGGAACTTAAGCTACGATCTCAAATCAATTAAGCCTT
AAATACCACCCAGGAGGGTAACCTTGCTAGCTGTGTTGAATCTACAAGCTTAATTATATAAGCAC
TTATAATGCCAGATGAGAGTGTAGGTG
Found at i:90734592 original size:54 final size:54
Alignment explanation
Indices: 90734505--90734612 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 54
90734495 GAAAAAGCGT
* * * *
90734505 CTGCACATGTGTTGTCACTTCTGGTGAGCTACTTTATCTGAACTTTGTTAAATC
1 CTGCACATGTGTTGTCACTCCTAGCGAGATACTTTATCTGAACTTTGTTAAATC
90734559 CTGCACATGTGTTGTCACTCCTAGCGAGATACTTTATCTGAACTTTGTTAAATC
1 CTGCACATGTGTTGTCACTCCTAGCGAGATACTTTATCTGAACTTTGTTAAATC
90734613 TTACAAGCAG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (54 bp):
CTGCACATGTGTTGTCACTCCTAGCGAGATACTTTATCTGAACTTTGTTAAATC
Found at i:90735928 original size:19 final size:20
Alignment explanation
Indices: 90735879--90735920 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
90735869 ATGTTGTGTA
90735879 TCCTAAAAAATGCGAACACC
1 TCCTAAAAAATGCGAACACC
90735899 TCCTAAAAAATGCGAACACC
1 TCCTAAAAAATGCGAACACC
90735919 TC
1 TC
90735921 TAACAAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.31, G:0.10, T:0.17
Consensus pattern (20 bp):
TCCTAAAAAATGCGAACACC
Found at i:90744453 original size:2 final size:2
Alignment explanation
Indices: 90744446--90744470 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
90744436 ATCCAAATTC
90744446 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
90744471 TTGTTTGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:90752841 original size:16 final size:17
Alignment explanation
Indices: 90752810--90752844 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
90752800 ATAATGATAA
*
90752810 TTTATCTAAGTAATTAT
1 TTTATCTAACTAATTAT
90752827 TTTATCTAACT-ATTAT
1 TTTATCTAACTAATTAT
90752843 TT
1 TT
90752845 CTCTCCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.57
Consensus pattern (17 bp):
TTTATCTAACTAATTAT
Found at i:90756491 original size:52 final size:52
Alignment explanation
Indices: 90756429--90756585 Score: 183
Period size: 52 Copynumber: 3.0 Consensus size: 52
90756419 CATATATCAT
* * * *
90756429 ACCGATGCCATATCCCGGATATGGTCTTACATGGGAGCACTTATCACTT-TTC
1 ACCGATGCCATAGCCC-GATATGGTCTTATATGGAATCACTTATCACTTGTTC
* * *
90756481 ACCGATGCCATAGCCCAACTATGGTCTTATA-CGAATCACTTATCACTTGTTT
1 ACCGATGCCATAGCCCGA-TATGGTCTTATATGGAATCACTTATCACTTGTTC
* *
90756533 TCCGATGCCATAGCCCAGCTATGGTCTTATATGGATATCACTTATCACTTGTT
1 ACCGATGCCATAGCCC-GATATGGTCTTATATGGA-ATCACTTATCACTTGTT
90756586 GCCATGGTCC
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
51 15 0.17
52 55 0.62
53 2 0.02
54 17 0.19
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (52 bp):
ACCGATGCCATAGCCCGATATGGTCTTATATGGAATCACTTATCACTTGTTC
Found at i:90759059 original size:25 final size:25
Alignment explanation
Indices: 90759031--90759091 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
90759021 GCAATACAAG
**
90759031 GGGAAGCTCATGTGAGCCGTATAAC
1 GGGAAGCTCATCCGAGCCGTATAAC
* *
90759056 GGGAAGCTTATCCGAGCTGTATAAC
1 GGGAAGCTCATCCGAGCCGTATAAC
*
90759081 GGGAAACTCAT
1 GGGAAGCTCAT
90759092 AAGAGCCATA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.21
Consensus pattern (25 bp):
GGGAAGCTCATCCGAGCCGTATAAC
Found at i:90759097 original size:25 final size:25
Alignment explanation
Indices: 90759044--90759098 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
90759034 AAGCTCATGT
* * **
90759044 GAGCCGTATAACGGGAAGCTTATCC
1 GAGCCGTATAACGGGAAACTCATAA
*
90759069 GAGCTGTATAACGGGAAACTCATAA
1 GAGCCGTATAACGGGAAACTCATAA
90759094 GAGCC
1 GAGCC
90759099 ATATTCCAGA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.18
Consensus pattern (25 bp):
GAGCCGTATAACGGGAAACTCATAA
Found at i:90761927 original size:41 final size:42
Alignment explanation
Indices: 90761860--90761948 Score: 137
Period size: 41 Copynumber: 2.1 Consensus size: 42
90761850 GCTGATGTGG
*
90761860 TAAAAAGCGCTTCCAGCTGGTAGCGTTTTTCTGTCAATATGC
1 TAAAAAGCGCTTCCAACTGGTAGCGTTTTTCTGTCAATATGC
90761902 TAAAAA-CGCTTCCAACTGG-ACGCGTTTTTCTGTCAATATGC
1 TAAAAAGCGCTTCCAACTGGTA-GCGTTTTTCTGTCAATATGC
*
90761943 AAAAAA
1 TAAAAA
90761949 TGCCATGTGT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
40 1 0.02
41 37 0.84
42 6 0.14
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (42 bp):
TAAAAAGCGCTTCCAACTGGTAGCGTTTTTCTGTCAATATGC
Found at i:90764560 original size:49 final size:49
Alignment explanation
Indices: 90764502--90764689 Score: 225
Period size: 49 Copynumber: 3.8 Consensus size: 49
90764492 TAGCCGAAGC
* *
90764502 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACATATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * *
90764551 AATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * * *
90764602 TTTC-GAGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGATCAAT
1 TATCTG-GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
90764651 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
90764690 CGTGACCTCA
Statistics
Matches: 115, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
49 74 0.64
50 3 0.03
51 38 0.33
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:90764621 original size:100 final size:100
Alignment explanation
Indices: 90764508--90764694 Score: 329
Period size: 100 Copynumber: 1.9 Consensus size: 100
90764498 AAGCTATCTG
* *
90764508 GTACGCATAGTAGCCTGCACTTAGTACTACATATGCGACCAATAATCTGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCT
90764573 GCACTTAGTACTACACACGTGATCACAGTTTTCGA
66 GCACTTAGTACTACACACGTGATCACAGTTTTCGA
* * *
90764608 GTACGCATAGTAGCTTGCACTTAGTACTACACATGCGATCAATTATCCGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCT
90764673 GCACTTAGTACTACACACGTGA
66 GCACTTAGTACTACACACGTGA
90764695 CCTCACAATA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (100 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCT
GCACTTAGTACTACACACGTGATCACAGTTTTCGA
Found at i:90773607 original size:55 final size:53
Alignment explanation
Indices: 90773493--90773681 Score: 236
Period size: 55 Copynumber: 3.5 Consensus size: 53
90773483 AACTTACCAT
* * *
90773493 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * *
90773546 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGTCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * *
90773601 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
*
90773655 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
90773682 ATATCCTTAT
Statistics
Matches: 117, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 2 0.02
53 34 0.29
54 35 0.30
55 44 0.38
56 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:90773695 original size:109 final size:108
Alignment explanation
Indices: 90773493--90773695 Score: 309
Period size: 109 Copynumber: 1.9 Consensus size: 108
90773483 AACTTACCAT
* *
90773493 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
* *
90773558 GCATGGTCTTACATGGGACCTTTGTCTTATAGTAACTCATCAA
66 GCATGGTCTTACATGAGACCTTTATCTTATAGTAACTCATCAA
* * *
90773601 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTT
*
90773666 GGCATGGTCTTACATGATATCC-TTATCTTA
65 GGCATGGTCTTACATGAGA-CCTTTATCTTA
90773696 CCAAATGCCA
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
108 39 0.46
109 44 0.52
110 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
GCATGGTCTTACATGAGACCTTTATCTTATAGTAACTCATCAA
Found at i:90773723 original size:47 final size:47
Alignment explanation
Indices: 90773668--90773789 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
90773658 CATGCCTTGG
*
90773668 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
*
90773715 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
90773762 CATGGTCTTATATGGTATCCTTCTCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
90773790 GCGCCAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:90784047 original size:24 final size:25
Alignment explanation
Indices: 90784020--90784067 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
90784010 TTAATAAAAC
90784020 AATA-TTATT-TTAAATAAAATATTA
1 AATATTTATTATTAAA-AAAATATTA
90784044 AATATTTATTAATTAAAAAAATAT
1 AATATTTATT-ATTAAAAAAATAT
90784068 CATTTAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 4 0.19
25 5 0.24
26 7 0.33
27 5 0.24
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
AATATTTATTATTAAAAAAATATTA
Found at i:90786393 original size:14 final size:15
Alignment explanation
Indices: 90786366--90786399 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
90786356 AACATAACAA
90786366 AAATACTATATATAT
1 AAATACTATATATAT
*
90786381 AAAT-CTATGTATAT
1 AAATACTATATATAT
90786395 AAATA
1 AAATA
90786400 AAAATATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (15 bp):
AAATACTATATATAT
Found at i:90786631 original size:22 final size:23
Alignment explanation
Indices: 90786597--90786639 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
90786587 AGTATAGCAT
*
90786597 TAAAAATATTAAAATA-AAATAAA
1 TAAAAATACT-AAATACAAATAAA
90786620 TAAAAA-ACTAAATACAAATA
1 TAAAAATACTAAATACAAATA
90786640 CATATATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 5 0.28
22 7 0.39
23 6 0.33
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (23 bp):
TAAAAATACTAAATACAAATAAA
Found at i:90786692 original size:3 final size:3
Alignment explanation
Indices: 90786684--90786725 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
90786674 ACTAATATAT
* * *
90786684 ATA ATA ATA ATA ATG ATA ATA ATA TTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
90786726 CAAGGATATT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:90787409 original size:13 final size:13
Alignment explanation
Indices: 90787383--90787432 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
90787373 AAATCAGTAG
*
90787383 AATAGAAAATAAA
1 AATAAAAAATAAA
90787396 AAT-AAAAATAAA
1 AATAAAAAATAAA
90787408 AATAAAATAATAAA
1 AATAAAA-AATAAA
*
90787422 AGTAAATAAAT
1 AATAAA-AAAT
90787433 CACCTCAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
12 11 0.34
13 6 0.19
14 14 0.44
15 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (13 bp):
AATAAAAAATAAA
Found at i:90787427 original size:6 final size:6
Alignment explanation
Indices: 90787383--90787414 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
90787373 AAATCAGTAG
90787383 AATAGAA AATAAA AATAAA AATAAA AATAAA A
1 AATA-AA AATAAA AATAAA AATAAA AATAAA A
90787415 TAATAAAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 21 0.84
7 4 0.16
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:90789003 original size:87 final size:87
Alignment explanation
Indices: 90788724--90789024 Score: 440
Period size: 88 Copynumber: 3.4 Consensus size: 87
90788714 CATATGACCC
* * * * *
90788724 GAGGCTCAACTCACCTCTTGCAATTTGAGTTGATTTTTGAAAAATATAATTTAAAAAAATAGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATT-GAAAAACAGAAA
90788789 TTGAAAATACCTCAGCGTGCCCT
65 TTGAAAATACCTCAGCGTGCCCT
*
90788812 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATGGAAAAAACAGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTG-AAAAACAGAAA
*
90788877 TTGAAAATACCTCAGTGTGCCCT
65 TTGAAAATACCTCAGCGTGCCCT
* * ** * *
90788900 GAGACTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAACTTGAAAAACGGAAAT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAACAGAAAT
*
90788965 TGAAAATACCTCAGCGTGTCCT
66 TGAAAATACCTCAGCGTGCCCT
* *
90788987 GAGGCTCAACTCACCTCTTGCAATATGAGTTGGTTTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
90789025 TTGAAAACAT
Statistics
Matches: 192, Mismatches: 20, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
87 65 0.34
88 127 0.66
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (87 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAACAGAAAT
TGAAAATACCTCAGCGTGCCCT
Found at i:90789156 original size:138 final size:141
Alignment explanation
Indices: 90788904--90789156 Score: 363
Period size: 138 Copynumber: 1.8 Consensus size: 141
90788894 TGCCCTGAGA
* ** * *
90788904 CTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAACTTGAAAAACGGAAATTGAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAAGTAAAAAACAGAAATTGAA
* *
90788969 AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGGTTTTTTTGAAAACA
66 AATACCTCAGCGTG-CCTGAAGCTCAACTCACCTCTTACAATATGAGTTGGTTTTTTTGAAAACA
90789034 TGAATTAAAGGG
130 TGAATTAAAGGG
* *
90789046 CTCAACTCACCTCTTGCAATATGAGTTGA-TTTTG-AAA-CATAAAGTAAAAATATAGAAATTGA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAAGTAAAAA-ACAGAAATTGA
90789108 AAATACCTCAGCGTG-CTGAAGCTCAACTCACCT-TTCACAATATGAGTTG
65 AAATACCTCAGCGTGCCTGAAGCTCAACTCACCTCTT-ACAATATGAGTTG
90789157 ATTTCTGAAA
Statistics
Matches: 100, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
137 2 0.02
138 29 0.29
139 10 0.10
140 27 0.27
141 5 0.05
142 27 0.27
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.29
Consensus pattern (141 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAAGTAAAAAACAGAAATTGAA
AATACCTCAGCGTGCCTGAAGCTCAACTCACCTCTTACAATATGAGTTGGTTTTTTTGAAAACAT
GAATTAAAGGG
Found at i:90789246 original size:89 final size:85
Alignment explanation
Indices: 90789044--90789263 Score: 268
Period size: 89 Copynumber: 2.6 Consensus size: 85
90789034 TGAATTAAAG
*
90789044 GGCTCAACTCACCTCTT-GCAATATGAGTTGATTTTG-AAACATAAA-GTAAAAATATAGAAATT
1 GGCTCAACTCACCT-TTCGCAATATGAGTTGATTTTGAAAACAGAAATGTAAAAATATAGAAATT
* *
90789106 GAAAATACCTCAGCGTGCTGA
65 GAAAATACCTCAGCGGGCCGA
* * * * *
90789127 AGCTCAACTCACCTTTCACAATATGAGTTGATTTCTGAAAACAGAAATTTGAAAA-ATAGAATTT
1 GGCTCAACTCACCTTTCGCAATATGAGTTGATTT-TGAAAACAGAAATGTAAAAATATAGAAATT
90789191 GAAAATACCTCAGCACATGGGCCGA
65 GAAAATACCTCAG--C--GGGCCGA
*
90789216 GGCTCAACTCACCTTTCGCGATATGAGTTGATTTTTGAAAACAGAAAT
1 GGCTCAACTCACCTTTCGCAATATGAGTTGA-TTTTGAAAACAGAAAT
90789264 AAAACATCAA
Statistics
Matches: 117, Mismatches: 11, Indels: 12
0.84 0.08 0.09
Matches are distributed among these distances:
82 2 0.02
83 29 0.25
84 2 0.02
85 29 0.25
86 5 0.04
87 1 0.01
89 46 0.39
90 3 0.03
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (85 bp):
GGCTCAACTCACCTTTCGCAATATGAGTTGATTTTGAAAACAGAAATGTAAAAATATAGAAATTG
AAAATACCTCAGCGGGCCGA
Found at i:90789253 original size:225 final size:227
Alignment explanation
Indices: 90788814--90789266 Score: 575
Period size: 225 Copynumber: 2.0 Consensus size: 227
90788804 CGTGCCCTGA
*
90788814 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATGGAAAAAACAGAAATT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACATAAATGGAAAAAACAGAAATT
* * * *
90788879 GAAAATACCTCAGTGTGCCCTGAGACTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAG
65 GAAAATACCTCAGCGTG-CCTGAGACTCAACTCACCTCTCACAATATGAGTTGATTTCTGAAAAG
* * * *
90788944 CATAACTTGAAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCA
129 CAAAACTTGAAAAACAGAAATTGAAAATACCTCAGCATGGCCTGAGGCTCAACTCACCTCTTGCA
* *
90789009 ATATGAGTTGGTTTTTTTGAAAACATGAATTAAAG
194 ATATGAGTTGGTATTTTTGAAAACA-GAAATAAAG
* * *
90789044 GGCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTG-AAACATAAA-GTAAAAATATAGAAATT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATGGAAAAA-ACAGAAATT
*
90789106 GAAAATACCTCAGCGTG-CTGA-AGCTCAACTCACCTTTCACAATATGAGTTGATTTCTGAAAA-
65 GAAAATACCTCAGCGTGCCTGAGA-CTCAACTCACCTCTCACAATATGAGTTGATTTCTGAAAAG
* * *
90789168 CAGAAATTTGAAAAATAGAATTTGAAAATACCTCAGCACATGGGCC-GAGGCTCAACTCACCT-T
129 CA-AAACTTGAAAAACAGAAATTGAAAATACCTCAG--CAT-GGCCTGAGGCTCAACTCACCTCT
*
90789231 TCGCGATATGAGTT-G-ATTTTTGAAAACAGAAATAAA
190 T-GCAATATGAGTTGGTATTTTTGAAAACAGAAATAAA
90789267 ACATCAAAAT
Statistics
Matches: 197, Mismatches: 19, Indels: 20
0.83 0.08 0.08
Matches are distributed among these distances:
224 10 0.05
225 79 0.40
226 9 0.05
227 61 0.31
228 3 0.02
229 5 0.03
230 30 0.15
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (227 bp):
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATGGAAAAAACAGAAATTG
AAAATACCTCAGCGTGCCTGAGACTCAACTCACCTCTCACAATATGAGTTGATTTCTGAAAAGCA
AAACTTGAAAAACAGAAATTGAAAATACCTCAGCATGGCCTGAGGCTCAACTCACCTCTTGCAAT
ATGAGTTGGTATTTTTGAAAACAGAAATAAAG
Found at i:90791723 original size:15 final size:15
Alignment explanation
Indices: 90791703--90791746 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
90791693 ATATTGTAAA
90791703 TATCATATTATGTTT
1 TATCATATTATGTTT
*
90791718 TATCATGTATATGTTT
1 TATCATAT-TATGTTT
90791734 TAAT-ATATTATGT
1 T-ATCATATTATGT
90791747 GTATATTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 12 0.48
16 11 0.44
17 2 0.08
ACGTcount: A:0.30, C:0.05, G:0.09, T:0.57
Consensus pattern (15 bp):
TATCATATTATGTTT
Found at i:90791826 original size:24 final size:25
Alignment explanation
Indices: 90791771--90791826 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
90791761 GTATGTTATG
* *
90791771 TATATATTATGTATATGCTTTTAAA
1 TATATATTATATATATGATTTTAAA
* *
90791796 TAT-TATTATATATCT-ATTTTCAA
1 TATATATTATATATATGATTTTAAA
90791819 TATATATT
1 TATATATT
90791827 TATGTAATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 9 0.35
24 14 0.54
25 3 0.12
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (25 bp):
TATATATTATATATATGATTTTAAA
Found at i:90803402 original size:55 final size:55
Alignment explanation
Indices: 90803318--90803492 Score: 323
Period size: 55 Copynumber: 3.2 Consensus size: 55
90803308 TCTGGGGCAC
*
90803318 CTATTCCCTTTTTATTCATTTTGTATTCCAGCAATGTTTGTTGATTGTGATTAAT
1 CTATTCCCTTTTTATTCATTTTGTATTCCAGCAATGTTTGTTGACTGTGATTAAT
* *
90803373 CTATTCCCTTTTTATTCATTTTTTATTCCAACAATGTTTGTTGACTGTGATTAAT
1 CTATTCCCTTTTTATTCATTTTGTATTCCAGCAATGTTTGTTGACTGTGATTAAT
90803428 CTATTCCCTTTTTATTCATTTTGTATTCCAGCAATGTTTGTTGACTGTGATTAAT
1 CTATTCCCTTTTTATTCATTTTGTATTCCAGCAATGTTTGTTGACTGTGATTAAT
90803483 CTATTCCCTT
1 CTATTCCCTT
90803493 CAAATTTTAT
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 115 1.00
ACGTcount: A:0.20, C:0.17, G:0.11, T:0.52
Consensus pattern (55 bp):
CTATTCCCTTTTTATTCATTTTGTATTCCAGCAATGTTTGTTGACTGTGATTAAT
Found at i:90804143 original size:44 final size:43
Alignment explanation
Indices: 90804009--90804153 Score: 134
Period size: 44 Copynumber: 3.3 Consensus size: 43
90803999 ACTTTAACCA
* *
90804009 CCTAAGCAGTAGGGTAACAGGCTGAAGATATAGATCTTATCAT
1 CCTAAGCAGTAGGGTAACAAGCTGAAGATATAGATCTTATCAC
* * * * * *
90804052 CCTAAGCAGTATGGAAAC-AGATCAAAGGTA-ACGAGCTTTAATC-C
1 CCTAAGCAGTAGGGTAACAAGCT-GAAGATATA-GATC-TT-ATCAC
*
90804096 CCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATCTTATCAC
1 CCTAAGCAGTAGGGTAACAAGCTGAAG-ATATAGATCTTATCAC
*
90804140 CCTAAGCAGCAGGG
1 CCTAAGCAGTAGGG
90804154 AAGCAGATCA
Statistics
Matches: 79, Mismatches: 15, Indels: 15
0.72 0.14 0.14
Matches are distributed among these distances:
42 3 0.04
43 27 0.34
44 37 0.47
45 11 0.14
46 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (43 bp):
CCTAAGCAGTAGGGTAACAAGCTGAAGATATAGATCTTATCAC
Found at i:90804165 original size:88 final size:87
Alignment explanation
Indices: 90804000--90804165 Score: 253
Period size: 88 Copynumber: 1.9 Consensus size: 87
90803990 ATTCACTAGA
* * * *
90804000 CTTTAACCACCTAAGCAGTAGGGTAACAGGCTGAAGATATAGATCTTATCATCCTAAGCAGTATG
1 CTTTAACCACCTAAGCAGTAGGGTAACAAGCTGAAGATATAGATCTTATCACCCTAAGCAGCAGG
90804065 GAAACAGATCAAAGGTAACGAG
66 GAAACAGATCAAAGGTAACGAG
*
90804087 CTTTAATCC-CCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATCTTATCACCCTAAGCAGCA
1 CTTTAA-CCACCTAAGCAGTAGGGTAACAAGCTGAAG-ATATAGATCTTATCACCCTAAGCAGCA
*
90804151 GGGAAGCAGATCAAA
64 GGGAAACAGATCAAA
90804166 AGACGGTGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
87 32 0.45
88 39 0.55
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22
Consensus pattern (87 bp):
CTTTAACCACCTAAGCAGTAGGGTAACAAGCTGAAGATATAGATCTTATCACCCTAAGCAGCAGG
GAAACAGATCAAAGGTAACGAG
Found at i:90804596 original size:43 final size:42
Alignment explanation
Indices: 90804538--90804643 Score: 122
Period size: 43 Copynumber: 2.5 Consensus size: 42
90804528 GGGCTTCAAC
* *
90804538 CCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAAGCTTAAA
1 CCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAAGC-TAAA
* *** * *
90804581 CCCCTAAGCAGTAGGGTAACACGTTGAATTTACAGATCTAAA
1 CCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAAGCTAAA
*
90804623 CCCCTAAGCAGTAGGGAAACA
1 CCCCTAAGCAGTAGGGTAACA
90804644 GATCAATGAT
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 24 0.44
43 30 0.56
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.20
Consensus pattern (42 bp):
CCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAAGCTAAA
Found at i:90806665 original size:15 final size:15
Alignment explanation
Indices: 90806645--90806688 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
90806635 ATATTATAAA
90806645 TATCATATTATGTTT
1 TATCATATTATGTTT
*
90806660 TATCATGTATATGTTT
1 TATCATAT-TATGTTT
90806676 TAAT-ATATTATGT
1 T-ATCATATTATGT
90806689 GTATATTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 12 0.48
16 11 0.44
17 2 0.08
ACGTcount: A:0.30, C:0.05, G:0.09, T:0.57
Consensus pattern (15 bp):
TATCATATTATGTTT
Found at i:90806768 original size:24 final size:25
Alignment explanation
Indices: 90806713--90806768 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
90806703 GTATGTTATG
* *
90806713 TATATATTATGTATATGCTTTTAAA
1 TATATATTATATATATGATTTTAAA
* *
90806738 TAT-TATTATATATCT-ATTTTCAA
1 TATATATTATATATATGATTTTAAA
90806761 TATATATT
1 TATATATT
90806769 TATGTAATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 9 0.35
24 14 0.54
25 3 0.12
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (25 bp):
TATATATTATATATATGATTTTAAA
Found at i:90820663 original size:26 final size:26
Alignment explanation
Indices: 90820633--90820707 Score: 123
Period size: 26 Copynumber: 2.9 Consensus size: 26
90820623 CCCATAATGG
90820633 AACATTTACCTAACCCATTATCATGA
1 AACATTTACCTAACCCATTATCATGA
*
90820659 AACATTTACCTAACCCATTATCATGG
1 AACATTTACCTAACCCATTATCATGA
* *
90820685 AACATTTACCTAATCCGTTATCA
1 AACATTTACCTAACCCATTATCA
90820708 ATTTGTATCA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.36, C:0.27, G:0.05, T:0.32
Consensus pattern (26 bp):
AACATTTACCTAACCCATTATCATGA
Found at i:90826431 original size:26 final size:26
Alignment explanation
Indices: 90826401--90826500 Score: 175
Period size: 26 Copynumber: 3.9 Consensus size: 26
90826391 CCCATAATGG
90826401 AACATTTACCTAACCCATTATCATGA
1 AACATTTACCTAACCCATTATCATGA
90826427 AACATTTACCTAACCCATTATCATGA
1 AACATTTACCTAACCCATTATCATGA
* *
90826453 AACATTTACCTAA-CAATTATCATGG
1 AACATTTACCTAACCCATTATCATGA
90826478 AACATTTACCTAACCCATTATCA
1 AACATTTACCTAACCCATTATCA
90826501 ATTTGTATCA
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
25 23 0.33
26 47 0.67
ACGTcount: A:0.39, C:0.26, G:0.04, T:0.31
Consensus pattern (26 bp):
AACATTTACCTAACCCATTATCATGA
Found at i:90826482 original size:51 final size:52
Alignment explanation
Indices: 90826401--90826500 Score: 175
Period size: 51 Copynumber: 1.9 Consensus size: 52
90826391 CCCATAATGG
*
90826401 AACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGA
1 AACATTTACCTAACCAATTATCATGAAACATTTACCTAACCCATTATCATGA
*
90826453 AACATTTACCTAA-CAATTATCATGGAACATTTACCTAACCCATTATCA
1 AACATTTACCTAACCAATTATCATGAAACATTTACCTAACCCATTATCA
90826501 ATTTGTATCA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 33 0.72
52 13 0.28
ACGTcount: A:0.39, C:0.26, G:0.04, T:0.31
Consensus pattern (52 bp):
AACATTTACCTAACCAATTATCATGAAACATTTACCTAACCCATTATCATGA
Found at i:90828812 original size:10 final size:10
Alignment explanation
Indices: 90828797--90828822 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
90828787 TATAGCCATT
90828797 AAAAAATATA
1 AAAAAATATA
90828807 AAAAAATATA
1 AAAAAATATA
90828817 AAAAAA
1 AAAAAA
90828823 GGGGAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAATATA
Found at i:90839570 original size:37 final size:37
Alignment explanation
Indices: 90839520--90839598 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
90839510 TTATTACGAA
* *
90839520 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
90839557 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
90839594 GTCTT
1 GTCTT
90839599 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:90839865 original size:47 final size:47
Alignment explanation
Indices: 90839715--90839952 Score: 343
Period size: 47 Copynumber: 5.1 Consensus size: 47
90839705 CCCTTCGGGA
* * * * * * *
90839715 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90839762 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90839808 CTTCTCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
90839855 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
90839902 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
90839949 CTTA
1 CTTA
90839953 CTATCATTTC
Statistics
Matches: 173, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 39 0.23
47 134 0.77
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:90839926 original size:94 final size:93
Alignment explanation
Indices: 90839715--90839952 Score: 341
Period size: 93 Copynumber: 2.5 Consensus size: 93
90839705 CCCTTCGGGA
* * * * * * * * *
90839715 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
90839780 TTTCACATTCACACATCGGCCATTAGGC
66 TTTCACATTCACACATCGGCCATTAGGC
* * *
90839808 CTTCTCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
90839873 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCA-CACATCGGCCATTAGGC
*
90839902 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
90839953 CTATCATTTC
Statistics
Matches: 128, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
93 64 0.50
94 64 0.50
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (93 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCACACATCGGCCATTAGGC
Found at i:90845481 original size:16 final size:16
Alignment explanation
Indices: 90845460--90845490 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90845450 CTATTCCCTT
*
90845460 CAAATTTTGTTTCTGA
1 CAAATTTTATTTCTGA
90845476 CAAATTTTATTTCTG
1 CAAATTTTATTTCTG
90845491 TCATTGTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.13, G:0.10, T:0.52
Consensus pattern (16 bp):
CAAATTTTATTTCTGA
Found at i:90846140 original size:44 final size:44
Alignment explanation
Indices: 90846068--90846179 Score: 138
Period size: 44 Copynumber: 2.5 Consensus size: 44
90846058 ATCCTGTCTT
* * * * *
90846068 CCTGAAGTCTCAGCGAAGCAGA-TCGAAGTCACCAGTCTTATCTC
1 CCTGAAGTCGCAGTGGAGCAGACT-GAAGTCACAAGTCTCATCTC
*
90846112 CCTGAAGT-GCAGTGGAGCAAGACTGAAGTTACAAGTCTCATCTC
1 CCTGAAGTCGCAGTGGAGC-AGACTGAAGTCACAAGTCTCATCTC
90846156 CCTGAAGTCGCAGTGGAGCAGACT
1 CCTGAAGTCGCAGTGGAGCAGACT
90846180 AAATATACAG
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
43 7 0.12
44 41 0.69
45 11 0.19
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.21
Consensus pattern (44 bp):
CCTGAAGTCGCAGTGGAGCAGACTGAAGTCACAAGTCTCATCTC
Found at i:90846586 original size:44 final size:43
Alignment explanation
Indices: 90846463--90846586 Score: 113
Period size: 44 Copynumber: 2.8 Consensus size: 43
90846453 GCTTTAACTG
* * * *
90846463 CCTAAGCAGTAGGGTAACAAGCTGAGGATTTACAGATCTTATCAC
1 CCTAAGCAGTAGGGTAAC-AGCTGA-AAATTACAGACCTTAACAC
* * * * * *
90846508 CCTAAGCAGTAGGGAAACAGATCAATGATGACAGACCTTAACCC
1 CCTAAGCAGTAGGGTAACAGCTGAA-AATTACAGACCTTAACAC
*
90846552 CCTAAGCAGTAGGGTAATAGGCTGAAAATTACAGA
1 CCTAAGCAGTAGGGTAACA-GCTGAAAATTACAGA
90846587 TCTTGTCTCC
Statistics
Matches: 61, Mismatches: 16, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
44 40 0.66
45 21 0.34
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (43 bp):
CCTAAGCAGTAGGGTAACAGCTGAAAATTACAGACCTTAACAC
Found at i:90851036 original size:31 final size:31
Alignment explanation
Indices: 90851001--90851078 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
90850991 TTACCAACCT
*
90851001 AGTGACTTAAATAAAATATTTTGAATAGTTC
1 AGTGACTTAAATAAAATATTTTGAATAATTC
* * *
90851032 AGTGACTTAAATGAATTTTTTTGAATAATTC
1 AGTGACTTAAATAAAATATTTTGAATAATTC
* * *
90851063 AATGACTAAAACAAAA
1 AGTGACTTAAATAAAA
90851079 ACTTACCATA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.36
Consensus pattern (31 bp):
AGTGACTTAAATAAAATATTTTGAATAATTC
Found at i:90857009 original size:12 final size:12
Alignment explanation
Indices: 90856992--90857023 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
90856982 TATTTTACCC
90856992 AATTTCTTCAAT
1 AATTTCTTCAAT
90857004 AATTTCTTCAAT
1 AATTTCTTCAAT
90857016 AATTTCTT
1 AATTTCTT
90857024 TTTCTAACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (12 bp):
AATTTCTTCAAT
Found at i:90859740 original size:44 final size:41
Alignment explanation
Indices: 90859691--90859786 Score: 113
Period size: 42 Copynumber: 2.2 Consensus size: 41
90859681 TATGGGATGT
90859691 TGGCATCGACTTATGATTTACGTATAAGACCATGTCTGGGACA-
1 TGGCATCGA-TT-TGATTT-CGTATAAGACCATGTCTGGGACAG
* * *
90859734 TCGGCATCGTATTTGATTTCGTGTAAGACCCTGTCTGGGGCAG
1 T-GGCATCG-ATTTGATTTCGTATAAGACCATGTCTGGGACAG
90859777 TGGCATCGAT
1 TGGCATCGAT
90859787 ATTTGATTAC
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
41 2 0.04
42 27 0.57
43 8 0.17
44 9 0.19
45 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (41 bp):
TGGCATCGATTTGATTTCGTATAAGACCATGTCTGGGACAG
Found at i:90859769 original size:42 final size:43
Alignment explanation
Indices: 90859691--90859825 Score: 127
Period size: 43 Copynumber: 3.1 Consensus size: 43
90859681 TATGGGATGT
* *
90859691 TGGCATCGACT-TATGATTTACGTATAAGACCATGTCTGGGACA-
1 TGGCATCGA-TATTTGATTT-CGTGTAAGACCATGTCTGGGACAG
* *
90859734 TCGGCATCG-TATTTGATTTCGTGTAAGACCCTGTCTGGGGCAG
1 T-GGCATCGATATTTGATTTCGTGTAAGACCATGTCTGGGACAG
* * *
90859777 TGGCATCGATATTTGATTACATGTAAGATCACAT-T-TGGGACAT
1 TGGCATCGATATTTGATTTCGTGTAAGA-C-CATGTCTGGGACAG
90859820 TGGCAT
1 TGGCAT
90859826 TGTACGAGCT
Statistics
Matches: 77, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
42 28 0.36
43 38 0.49
44 9 0.12
45 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (43 bp):
TGGCATCGATATTTGATTTCGTGTAAGACCATGTCTGGGACAG
Found at i:90862210 original size:63 final size:63
Alignment explanation
Indices: 90862137--90862295 Score: 169
Period size: 63 Copynumber: 2.5 Consensus size: 63
90862127 TTTAGAGGAG
* * *
90862137 GTGTTGATGCAGAGAATGATTGTGTGTGATATGGTGCTTGTGCAAAATAATCTGGTGCT-AAA
1 GTGTTGATGCAGAGAATGATTGTGTGTGATATGGTACTTGTGCAAAATAAACTGGAGCTGAAA
* * * * * *
90862199 TGTGTTGATGCA-AGGAATGGTTGTGCGTGCTCTGGTACTTGTGTAAAATAAACTGGAGTTGAAA
1 -GTGTTGATGCAGA-GAATGATTGTGTGTGATATGGTACTTGTGCAAAATAAACTGGAGCTGAAA
* * * *
90862263 GTGTTGATGCGGGGAGTGATTGTATGTGATATG
1 GTGTTGATGCAGAGAATGATTGTGTGTGATATG
90862296 ATGTGATACT
Statistics
Matches: 76, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
62 1 0.01
63 72 0.95
64 3 0.04
ACGTcount: A:0.25, C:0.08, G:0.33, T:0.34
Consensus pattern (63 bp):
GTGTTGATGCAGAGAATGATTGTGTGTGATATGGTACTTGTGCAAAATAAACTGGAGCTGAAA
Found at i:90868512 original size:9 final size:9
Alignment explanation
Indices: 90868493--90868529 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
90868483 TGAGTTTTCG
90868493 AATTCGAAT
1 AATTCGAAT
90868502 AACTT-GAAT
1 AA-TTCGAAT
90868511 AATTCGAAT
1 AATTCGAAT
90868520 AATTCGAAT
1 AATTCGAAT
90868529 A
1 A
90868530 TCAAACTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 2 0.08
9 22 0.85
10 2 0.08
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:90868905 original size:15 final size:16
Alignment explanation
Indices: 90868885--90868914 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90868875 CTATTTACTT
90868885 TTCCTC-AAACTTTTA
1 TTCCTCAAAACTTTTA
90868900 TTCCTCAAAACTTTT
1 TTCCTCAAAACTTTT
90868915 TATTTTTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.47
Consensus pattern (16 bp):
TTCCTCAAAACTTTTA
Found at i:90869078 original size:17 final size:17
Alignment explanation
Indices: 90869024--90869104 Score: 78
Period size: 17 Copynumber: 4.6 Consensus size: 17
90869014 TTATATATAC
90869024 TATTTATATTATTAAAT
1 TATTTATATTATTAAAT
* *
90869041 TAAATTTTACATT-TTATAT
1 T--A-TTTATATTATTAAAT
90869060 TATTTATATTATTAAAT
1 TATTTATATTATTAAAT
90869077 TATTTAGTCA-TATTAAA-
1 TATTTA-T-ATTATTAAAT
90869094 TATTTATATTA
1 TATTTATATTA
90869105 AAATTGAATT
Statistics
Matches: 53, Mismatches: 4, Indels: 15
0.74 0.06 0.21
Matches are distributed among these distances:
15 1 0.02
16 10 0.19
17 19 0.36
18 8 0.15
19 8 0.15
20 7 0.13
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.57
Consensus pattern (17 bp):
TATTTATATTATTAAAT
Found at i:90874760 original size:13 final size:13
Alignment explanation
Indices: 90874742--90874772 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
90874732 ATTTTTTATG
90874742 AAAAAATAATATA
1 AAAAAATAATATA
90874755 AAAAAATAATATA
1 AAAAAATAATATA
90874768 AAAAA
1 AAAAA
90874773 GTTTTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (13 bp):
AAAAAATAATATA
Found at i:90885382 original size:19 final size:18
Alignment explanation
Indices: 90885324--90885382 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 18
90885314 ATTGAGACTG
90885324 ATACTGAATTGAATTATGGA
1 ATACTGAATTGAATT-T-GA
* *
90885344 ATACTGAATATTACTTTGA
1 ATACTGAAT-TGAATTTGA
90885363 ATACTGAATTGAATTGTGA
1 ATACTGAATTGAATT-TGA
90885382 A
1 A
90885383 GTTACTGATT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
18 4 0.12
19 15 0.45
20 10 0.30
21 4 0.12
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.37
Consensus pattern (18 bp):
ATACTGAATTGAATTTGA
Found at i:90885904 original size:45 final size:44
Alignment explanation
Indices: 90885840--90885977 Score: 204
Period size: 45 Copynumber: 3.1 Consensus size: 44
90885830 CTGTTACTGC
*
90885840 TACTGTTACTGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCG-CACTTTGTGTGTCGAATATTGT
* **
90885885 TACTGTTACCGTTATCGATTCGGCACCCTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTC-GCACTTTGTGTGTCGAATATTGT
*
90885930 TACTGTTACCGTTACCGATTCTGCACTTTGTGTGTCGGATATTGT
1 TACTGTTACCGTTACCGATTC-GCACTTTGTGTGTCGAATATTGT
90885975 TAC
1 TAC
90885978 CGTACTGTTA
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 82 0.99
46 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.21, T:0.41
Consensus pattern (44 bp):
TACTGTTACCGTTACCGATTCGCACTTTGTGTGTCGAATATTGT
Found at i:90891181 original size:43 final size:43
Alignment explanation
Indices: 90891120--90891274 Score: 267
Period size: 43 Copynumber: 3.6 Consensus size: 43
90891110 CCGGCATTAC
*
90891120 GCCTGCTAGGCATGAAGGCCCGAATACACATCA-CTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCATC-GGCACGAA
*
90891163 GCCTGCTAGGCACAAAGGCCCGAATACACATCATCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAA
90891206 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAA
*
90891249 GCCTGCTAGGCACGAAGGCCCAAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
90891275 TAATACCAGC
Statistics
Matches: 107, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
43 106 0.99
44 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.25, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAA
Found at i:90891320 original size:38 final size:38
Alignment explanation
Indices: 90891272--90891359 Score: 149
Period size: 38 Copynumber: 2.3 Consensus size: 38
90891262 GAAGGCCCAA
* * *
90891272 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
90891310 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
90891348 ATATATTACCAG
1 ATATATTACCAG
90891360 ATTTAACCCG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.23
Consensus pattern (38 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:90891366 original size:23 final size:23
Alignment explanation
Indices: 90891336--90891382 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
90891326 AAGCCTGCGG
90891336 GATTTAACCCGGATATATTACCA
1 GATTTAACCCGGATATATTACCA
90891359 GATTTAACCCGGATATATTACCA
1 GATTTAACCCGGATATATTACCA
90891382 G
1 G
90891383 CACAAAGCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (23 bp):
GATTTAACCCGGATATATTACCA
Found at i:90891370 original size:61 final size:61
Alignment explanation
Indices: 90891298--90891420 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
90891288 AGGCCTGCGG
*
90891298 GATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCA
1 GATTTAACCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATTACCA
90891359 GATTTAACCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATTACCA
1 GATTTAACCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATTACCA
90891420 G
1 G
90891421 CACGAAGCCT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (61 bp):
GATTTAACCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATTACCA
Found at i:90891410 original size:38 final size:38
Alignment explanation
Indices: 90891359--90891460 Score: 152
Period size: 38 Copynumber: 2.7 Consensus size: 38
90891349 TATATTACCA
*
90891359 GATTTAACCCGGATATATTACCAGCACAAAGCCTGCGG
1 GATTTAACCCGGATATATTACCAGCACAAAGCCTGCAG
* *
90891397 GATTTAACCCGGATATATTACCAGCACGAAGCCTGTAG
1 GATTTAACCCGGATATATTACCAGCACAAAGCCTGCAG
*
90891435 GATTTAACTCGGATATAATT-CCAGCA
1 GATTTAACCCGGATAT-ATTACCAGCA
90891461 TATAGCCTTC
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
38 56 0.95
39 3 0.05
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.25
Consensus pattern (38 bp):
GATTTAACCCGGATATATTACCAGCACAAAGCCTGCAG
Found at i:90891448 original size:99 final size:99
Alignment explanation
Indices: 90891272--90891451 Score: 306
Period size: 99 Copynumber: 1.8 Consensus size: 99
90891262 GAAGGCCCAA
* * *
90891272 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCAGG
90891337 ATTTAACCCGGATATATTACCAGATTTAACCCGG
66 ATTTAACCCGGATATATTACCAGATTTAACCCGG
* *
90891371 ATATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGTAGG
1 ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCAGG
*
90891436 ATTTAACTCGGATATA
66 ATTTAACCCGGATATA
90891452 ATTCCAGCAT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 75 1.00
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (99 bp):
ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCAGG
ATTTAACCCGGATATATTACCAGATTTAACCCGG
Found at i:90903452 original size:14 final size:14
Alignment explanation
Indices: 90903433--90903462 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
90903423 TATCTTATAC
90903433 ATATGCGTGAATCT
1 ATATGCGTGAATCT
*
90903447 ATATGCGTTAATCT
1 ATATGCGTGAATCT
90903461 AT
1 AT
90903463 CTTGAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (14 bp):
ATATGCGTGAATCT
Found at i:90905611 original size:17 final size:18
Alignment explanation
Indices: 90905579--90905614 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
90905569 AAAATCGTAG
90905579 CTTTTTCTCCTTTCTTTCT
1 CTTTTTCT-CTTTCTTTCT
90905598 CTTTTTCT-TTTCTTTCT
1 CTTTTTCTCTTTCTTTCT
90905615 TTCCTTCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
19 8 0.47
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (18 bp):
CTTTTTCTCTTTCTTTCT
Found at i:90905616 original size:25 final size:25
Alignment explanation
Indices: 90905588--90905635 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
90905578 GCTTTTTCTC
* * *
90905588 CTTTCTTTCTCTTTTTCTTTTCTTT
1 CTTTCCTTCTCTGTTTCATTTCTTT
90905613 CTTTCCTTCTCTGTTTCATTTCT
1 CTTTCCTTCTCTGTTTCATTTCT
90905636 ACTTTAGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.02, C:0.27, G:0.02, T:0.69
Consensus pattern (25 bp):
CTTTCCTTCTCTGTTTCATTTCTTT
Found at i:90905634 original size:21 final size:21
Alignment explanation
Indices: 90905588--90905635 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
90905578 GCTTTTTCTC
*
90905588 CTTTCTTTCTCTTTTTCTTTT
1 CTTTCTTTCTCTTTCTCTTTT
90905609 CTTTCTTTC-C-TTCTCTGTTT
1 CTTTCTTTCTCTTTCTCT-TTT
90905629 CATTTCT
1 C-TTTCT
90905636 ACTTTAGCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 5 0.21
20 5 0.21
21 14 0.58
ACGTcount: A:0.02, C:0.27, G:0.02, T:0.69
Consensus pattern (21 bp):
CTTTCTTTCTCTTTCTCTTTT
Found at i:90905673 original size:25 final size:24
Alignment explanation
Indices: 90905645--90905691 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
90905635 TACTTTAGCT
90905645 TTCTTT-TTCTATTTCTATTTATTTA
1 TTCTTTCTT-TATTTCT-TTTATTTA
*
90905670 TTCTTTCTTTATTTGTTTTATT
1 TTCTTTCTTTATTTCTTTTATT
90905692 ATATATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 6 0.30
25 12 0.60
26 2 0.10
ACGTcount: A:0.13, C:0.11, G:0.02, T:0.74
Consensus pattern (24 bp):
TTCTTTCTTTATTTCTTTTATTTA
Done.