Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 278 of 325
Found at i:90905704 original size:5 final size:5
Alignment explanation
Indices: 90905694--90905747 Score: 108
Period size: 5 Copynumber: 10.8 Consensus size: 5
90905684 GTTTTATTAT
90905694 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
90905744 ATAT
1 ATAT
90905748 TTATACTTGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 49 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:90907523 original size:39 final size:38
Alignment explanation
Indices: 90907431--90907578 Score: 192
Period size: 39 Copynumber: 3.9 Consensus size: 38
90907421 TTCCACTCCC
* * * * *
90907431 CCCATTCTACTTTGTTTTATTATTAATCAAAAAC-ACTT
1 CCCATACTATTTTGTTTTATTGTTAAT-TAAAACTATTT
*
90907469 CCCATGCTATTTTGTTTTATTGTTAATTAAAACTATTT
1 CCCATACTATTTTGTTTTATTGTTAATTAAAACTATTT
90907507 CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTTT
1 -CCCATACTATTTTGTTTTATTGTTAATTAAAACTA-TTT
*
90907547 CTCATACTATTTTGTTTTATT-TTAATTAAAAC
1 CCCATACTATTTTGTTTTATTGTTAATTAAAAC
90907579 CATACTTTAT
Statistics
Matches: 100, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
37 5 0.05
38 38 0.38
39 54 0.54
40 3 0.03
ACGTcount: A:0.29, C:0.16, G:0.05, T:0.50
Consensus pattern (38 bp):
CCCATACTATTTTGTTTTATTGTTAATTAAAACTATTT
Found at i:90907528 original size:77 final size:77
Alignment explanation
Indices: 90907430--90907578 Score: 212
Period size: 77 Copynumber: 1.9 Consensus size: 77
90907420 ATTCCACTCC
* *
90907430 CCCCATTCTACTTTGTTTTATTATTAATCAAAAAC-AC-TTCCCATGCTATTTTGTTTTATTGTT
1 CCCCATACTACTTTGTTTTATTATTAAT-AAAAACTACTTTCCCATACTATTTTGTTTTATT-TT
90907493 AATTAAAACTATTT
64 AATTAAAACTATTT
* * * *
90907507 CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTTTCTCATACTATTTTGTTTTATTTTAA
1 CCCCATACTACTTTGTTTTATTATTAATAAAAACTACTTTCCCATACTATTTTGTTTTATTTTAA
90907572 TTAAAAC
66 TTAAAAC
90907579 CATACTTTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
76 5 0.08
77 38 0.59
78 21 0.33
ACGTcount: A:0.29, C:0.17, G:0.05, T:0.50
Consensus pattern (77 bp):
CCCCATACTACTTTGTTTTATTATTAATAAAAACTACTTTCCCATACTATTTTGTTTTATTTTAA
TTAAAACTATTT
Found at i:90911424 original size:20 final size:20
Alignment explanation
Indices: 90911399--90911439 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
90911389 TATATATATT
*
90911399 TGTGATATT-ATTATGAATTA
1 TGTGAT-TTAATTATAAATTA
90911419 TGTGATTTAATTATAAATTA
1 TGTGATTTAATTATAAATTA
90911439 T
1 T
90911440 ATCTTGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (20 bp):
TGTGATTTAATTATAAATTA
Found at i:90917558 original size:26 final size:26
Alignment explanation
Indices: 90917529--90917632 Score: 163
Period size: 26 Copynumber: 4.0 Consensus size: 26
90917519 ATTCCCATCT
*
90917529 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
90917555 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
90917581 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
**
90917607 TGGAGTATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
90917633 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.34
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:90921140 original size:14 final size:14
Alignment explanation
Indices: 90921121--90921151 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
90921111 CCTTGAGTTT
90921121 CTAAGGGTACATCC
1 CTAAGGGTACATCC
90921135 CTAAGGGTACATCC
1 CTAAGGGTACATCC
90921149 CTA
1 CTA
90921152 TACAGTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (14 bp):
CTAAGGGTACATCC
Found at i:90950171 original size:25 final size:26
Alignment explanation
Indices: 90950121--90950171 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
90950111 AAAGGGAAAA
*
90950121 AAAAAACAGAAACAAATATGGTTTTT
1 AAAAAACAGAAACAAATATGGATTTT
*
90950147 AAAAAA-A-AAACAACATATTGATTTT
1 AAAAAACAGAAACAA-ATATGGATTTT
90950172 GAATTGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 6 0.27
25 10 0.45
26 6 0.27
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.27
Consensus pattern (26 bp):
AAAAAACAGAAACAAATATGGATTTT
Found at i:90952312 original size:21 final size:21
Alignment explanation
Indices: 90952262--90952312 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
90952252 ATTTGAGAGA
90952262 TATTA-TTTGAATAATTATATC
1 TATTACTTT-AATAATTATATC
* *
90952283 TCTTACTTTAATAGTTATATC
1 TATTACTTTAATAATTATATC
*
90952304 TATTTCTTT
1 TATTACTTT
90952313 TTAAAATGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 22 0.88
22 3 0.12
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.57
Consensus pattern (21 bp):
TATTACTTTAATAATTATATC
Found at i:90961916 original size:12 final size:12
Alignment explanation
Indices: 90961894--90961922 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
90961884 TTATTTAACT
90961894 TTTAA-ATTTAA
1 TTTAATATTTAA
90961905 TTTAATATTTAA
1 TTTAATATTTAA
90961917 TTTAAT
1 TTTAAT
90961923 GCTACATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TTTAATATTTAA
Found at i:90964984 original size:26 final size:27
Alignment explanation
Indices: 90964938--90964994 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
90964928 AGCACAAGCT
*
90964938 TCACTTCTCTGTCTTTGTCTCTCTTTA
1 TCACTTCTCTGTCTTTATCTCTCTTTA
* *
90964965 TCAC-TCTCTGT-TCTTATCTCTGTTTC
1 TCACTTCTCTGTCT-TTATCTCTCTTTA
90964991 TCAC
1 TCAC
90964995 CTTGAGAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 1 0.04
26 21 0.81
27 4 0.15
ACGTcount: A:0.09, C:0.32, G:0.07, T:0.53
Consensus pattern (27 bp):
TCACTTCTCTGTCTTTATCTCTCTTTA
Found at i:90972744 original size:43 final size:42
Alignment explanation
Indices: 90972683--90972791 Score: 150
Period size: 42 Copynumber: 2.6 Consensus size: 42
90972673 AATGCCAACT
90972683 TCCCAGAC-GTGGTCTTACATGTAATCAAATATCGATGCT-ACTG
1 TCCCAGACAG-GGTCTTACATGTAATCAAATA-CGATGCTGA-TG
*
90972726 TCCCAGACAGGGTCTTACATGAAATCAAATACGATGCTGATG
1 TCCCAGACAGGGTCTTACATGTAATCAAATACGATGCTGATG
* *
90972768 TCCCAGACATGGTCTTACACGTAA
1 TCCCAGACAGGGTCTTACATGTAA
90972792 ATCATCAGTC
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
42 30 0.50
43 29 0.48
44 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACATGTAATCAAATACGATGCTGATG
Found at i:90972794 original size:43 final size:41
Alignment explanation
Indices: 90972683--90972856 Score: 161
Period size: 43 Copynumber: 4.0 Consensus size: 41
90972673 AATGCCAACT
* * *
90972683 TCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCTACTG
1 TCCCAGACATGGTCTTACACGAAATCAAATA-CGATGCTA-TG
* *
90972726 TCCCAGACAGGGTCTTACATGAAATCAAATACGATGCTGATG
1 TCCCAGACATGGTCTTACACGAAATCAAATACGATGCT-ATG
* * *
90972768 TCCCAGACATGGTCTTACACGTAAATCATCAGT-CGATGCCAACG
1 TCCCAGACATGGTCTTACACG-AAATCA--AATACGATG-CTATG
* * *
90972812 TTCCAGACATGGTCTTACACGAAAACAAATATCGAATCCTATG
1 TCCCAGACATGGTCTTACACGAAATCAAATA-CG-ATGCTATG
90972855 TC
1 TC
90972857 ATGACATATG
Statistics
Matches: 108, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
41 2 0.02
42 28 0.26
43 46 0.43
44 29 0.27
45 3 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (41 bp):
TCCCAGACATGGTCTTACACGAAATCAAATACGATGCTATG
Found at i:90980742 original size:30 final size:30
Alignment explanation
Indices: 90980707--90980763 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
90980697 TGGGCAGGCC
90980707 GTGTGTCTCACACGGCCACTAGACATGTCT
1 GTGTGTCTCACACGGCCACTAGACATGTCT
* * *
90980737 GTGTGTCTTACATGGCCATTAGACATG
1 GTGTGTCTCACACGGCCACTAGACATG
90980764 CCCGTCTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.30
Consensus pattern (30 bp):
GTGTGTCTCACACGGCCACTAGACATGTCT
Found at i:90982476 original size:29 final size:28
Alignment explanation
Indices: 90982440--90982495 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
90982430 TGAAATACTA
*
90982440 ATATCATGGCCCGTAGCCAAATCAGTTG
1 ATATCATGGCCCGAAGCCAAATCAGTTG
*
90982468 ATATGCATGGCTCGAAGCCAAATCAGTT
1 ATAT-CATGGCCCGAAGCCAAATCAGTT
90982496 TATCTCGCGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.25
Consensus pattern (28 bp):
ATATCATGGCCCGAAGCCAAATCAGTTG
Found at i:90986311 original size:2 final size:2
Alignment explanation
Indices: 90986304--90986356 Score: 70
Period size: 2 Copynumber: 26.5 Consensus size: 2
90986294 ACAAGTAAAC
* * * *
90986304 AT AT AT AT AT AA AT AT AT AA AT AT AT AT AA AT AT AT AT AT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
90986346 AT AT AT AT AT A
1 AT AT AT AT AT A
90986357 CAAACCTTTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:90986612 original size:43 final size:42
Alignment explanation
Indices: 90986563--90986708 Score: 168
Period size: 43 Copynumber: 3.4 Consensus size: 42
90986553 TATCCGAGGT
* * * *
90986563 ATGGTCTTACATGTTATTACATATGGATGCCATTGTCCCAGAC
1 ATGGTCTTACACGTAATTA-ATATCGATGCCAATGTCCCAGAC
* *
90986606 ATGGTCTTACACATAATTAATTAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATTAA-TATCGATGCCAATGTCCCAGAC
* *
90986649 ATCGTCTTACACGTAATCTTAATA-CAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAA--TTAATATCGATGCCAATGTCCCAGAC
*
90986692 ATGGTCTTACATGTAAT
1 ATGGTCTTACACGTAAT
90986709 CACATATCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 81 0.91
44 2 0.02
45 4 0.04
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGGTCTTACACGTAATTAATATCGATGCCAATGTCCCAGAC
Found at i:90986709 original size:43 final size:45
Alignment explanation
Indices: 90986589--90986709 Score: 169
Period size: 43 Copynumber: 2.8 Consensus size: 45
90986579 TTACATATGG
* * *
90986589 ATGCCATTGTCCCAGACATGGTCTTACACATAA--TTAATTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTTAATTAACA
*
90986632 ATGCCAATGTCCCAGACATCGTCTTACACGTAATCTTAA-T-ACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTTAATTAACA
*
90986675 ATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC
90986710 ACATATCAAT
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
43 65 0.93
44 1 0.01
45 4 0.06
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (45 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTTAATTAACA
Found at i:90987234 original size:29 final size:28
Alignment explanation
Indices: 90987193--90987258 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
90987183 CTTTCATTTA
*
90987193 TTTCACAAATTAACCCCTTAATTT-ACATT
1 TTTCTCAAATTAA-CCCTT-ATTTGACATT
* *
90987222 TTTCTCAATTTAATCCTTATTTGACATT
1 TTTCTCAAATTAACCCTTATTTGACATT
*
90987250 TTTGTCAAA
1 TTTCTCAAA
90987259 AATCACTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
27 4 0.13
28 16 0.52
29 11 0.35
ACGTcount: A:0.30, C:0.20, G:0.03, T:0.47
Consensus pattern (28 bp):
TTTCTCAAATTAACCCTTATTTGACATT
Found at i:90987378 original size:20 final size:21
Alignment explanation
Indices: 90987335--90987379 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
90987325 AATCTCAAGC
90987335 ATTCATCAATGAAAAATCACAA
1 ATTCATCAA-GAAAAATCACAA
* *
90987357 ATTCATCAA-AAAATTCAGAA
1 ATTCATCAAGAAAAATCACAA
90987377 ATT
1 ATT
90987380 AGGGTACGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 12 0.57
22 9 0.43
ACGTcount: A:0.53, C:0.16, G:0.04, T:0.27
Consensus pattern (21 bp):
ATTCATCAAGAAAAATCACAA
Found at i:90994181 original size:43 final size:43
Alignment explanation
Indices: 90994003--90994181 Score: 129
Period size: 43 Copynumber: 4.2 Consensus size: 43
90993993 ACTCAGAAAT
* * *
90994003 CACGTAAGCTC-ATACAATGCC-ATATCCCAGATATGGTCTTA
1 CACGTAATCTCAATACAATGCCAATGTCCCAGACATGGTCTTA
* * * * * *
90994044 CATGTTAT-T-ACATATCGATGCCACTGTTCTAGACA-GAGTCTTA
1 CACGTAATCTCA-ATA-CAATGCCAATGTCCCAGACATG-GTCTTA
* * * *
90994087 CACATAA--TCAATTAACGATGCCATTGTCCCGGACATGGTCTTA
1 CACGTAATCTCAA-T-ACAATGCCAATGTCCCAGACATGGTCTTA
*
90994130 CACATAATCTCAATACAATGCCAATGTCCCAGACATGGTCTTA
1 CACGTAATCTCAATACAATGCCAATGTCCCAGACATGGTCTTA
*
90994173 CATGTAATC
1 CACGTAATC
90994182 ACATATCAAT
Statistics
Matches: 106, Mismatches: 21, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
40 1 0.01
41 8 0.08
42 9 0.08
43 81 0.76
44 3 0.03
45 4 0.04
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (43 bp):
CACGTAATCTCAATACAATGCCAATGTCCCAGACATGGTCTTA
Found at i:90997286 original size:22 final size:22
Alignment explanation
Indices: 90997255--90997309 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
90997245 GCCTTATGAA
90997255 TCTC-TTCCAAGGCTTTGAGTT
1 TCTCTTTCCAAGGCTTTGAGTT
90997276 TCTCTTTCCAAGGCTTTGAGTT
1 TCTCTTTCCAAGGCTTTGAGTT
*
90997298 TCTCTTCCCAAG
1 TCTCTTTCCAAG
90997310 CAAGTTTCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 4 0.12
22 28 0.88
ACGTcount: A:0.15, C:0.27, G:0.16, T:0.42
Consensus pattern (22 bp):
TCTCTTTCCAAGGCTTTGAGTT
Found at i:91000305 original size:47 final size:47
Alignment explanation
Indices: 91000198--91000828 Score: 960
Period size: 47 Copynumber: 13.1 Consensus size: 47
91000188 GAAATGATAG
91000198 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
91000247 TAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
91000294 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
91000341 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT--ATGTGA
91000392 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
91000441 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGA
91000492 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
91000541 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
91000588 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
91000635 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGA
91000686 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT-A
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
91000731 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
91000778 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
91000825 TAAG
1 TAAG
91000829 TCCCGAAGGG
Statistics
Matches: 548, Mismatches: 22, Indels: 26
0.92 0.04 0.04
Matches are distributed among these distances:
45 2 0.00
46 52 0.09
47 221 0.40
49 131 0.24
50 34 0.06
51 108 0.20
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:91000734 original size:143 final size:145
Alignment explanation
Indices: 91000198--91000817 Score: 1018
Period size: 143 Copynumber: 4.3 Consensus size: 145
91000188 GAAATGATAG
*
91000198 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
91000261 CGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66 CGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
91000326 AGTGTATATATGAGA
131 AGTGTATATATGAGA
*
91000341 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGATGTGATAAGGCCTAATGGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
*
91000406 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
66 CGATGTGATGAATGTGAAAGTG--TATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
91000471 AAAGTGTATATATATATGTGA
129 AAAGTG----TATATATGAGA
91000492 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
91000555 CGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66 CGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
91000620 AGCGTATATATGAGA
131 AGTGTATATATGAGA
91000635 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGAT-AGGCCTAATGGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
*
91000699 CGATGTGATGAATGTGAAAGTGTATATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66 CGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
91000763 AGTGTATATATGTGA
131 AGTGTATATATGAGA
* * * * * * *
91000778 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
91000818 AATGTGATAA
Statistics
Matches: 449, Mismatches: 18, Indels: 20
0.92 0.04 0.04
Matches are distributed among these distances:
143 161 0.36
144 42 0.09
145 61 0.14
147 91 0.20
149 48 0.11
151 46 0.10
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (145 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
CGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGAGA
Found at i:91000996 original size:37 final size:37
Alignment explanation
Indices: 91000946--91001024 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
91000936 CCGAGCTCTA
* *
91000946 AAGACCCGATAACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
91000983 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
91001020 AAGAC
1 AAGAC
91001025 TTCGTAATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:91009219 original size:28 final size:28
Alignment explanation
Indices: 91009176--91009245 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
91009166 AATGGAAGTG
* * *
91009176 TTTGTGGCAATATATGAAAATGGAAGCC
1 TTTGTGGTAATCTATGAAAATAGAAGCC
91009204 TTCT-TGGTAATCTATGAAAATAGAAGCC
1 TT-TGTGGTAATCTATGAAAATAGAAGCC
91009232 TTTGTGGTAATCTA
1 TTTGTGGTAATCTA
91009246 AGGAAAGGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 1 0.03
28 35 0.95
29 1 0.03
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.34
Consensus pattern (28 bp):
TTTGTGGTAATCTATGAAAATAGAAGCC
Found at i:91009429 original size:27 final size:27
Alignment explanation
Indices: 91009381--91009444 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 27
91009371 CATCTCCAAT
* **
91009381 GAACTCTAAACGGATAGCATGTATGGC
1 GAACTCTGAACGGATAAAATGTATGGC
* *
91009408 GAACTCTGAAGGGATAAAATGTGTGGC
1 GAACTCTGAACGGATAAAATGTATGGC
* *
91009435 AAACTTTGAA
1 GAACTCTGAA
91009445 ATAATGGTAG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (27 bp):
GAACTCTGAACGGATAAAATGTATGGC
Found at i:91011431 original size:26 final size:26
Alignment explanation
Indices: 91011402--91011458 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
91011392 ATCACATGTT
91011402 AGTTATTTAAATACATGATATCATCC
1 AGTTATTTAAATACATGATATCATCC
91011428 AGTTATTTAAATACATGATATCATCC
1 AGTTATTTAAATACATGATATCATCC
91011454 A-TTAT
1 AGTTAT
91011459 CTCAATGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 4 0.13
26 27 0.87
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.40
Consensus pattern (26 bp):
AGTTATTTAAATACATGATATCATCC
Found at i:91011783 original size:22 final size:22
Alignment explanation
Indices: 91011728--91011813 Score: 68
Period size: 23 Copynumber: 3.8 Consensus size: 22
91011718 TAGCTGATAG
**
91011728 ATAGTAAGCTCTATTGAGCTGA
1 ATAGTAAGCTCTAACGAGCTGA
*
91011750 A-ACGATAAGCTCTAACGAGGTGA
1 ATA-G-TAAGCTCTAACGAGCTGA
91011773 ATAGTAAGCTC-ATACGAGCTAAGA
1 ATAGTAAGCTCTA-ACGAGCT--GA
* *
91011797 ACAGTAAGCTCTTACGA
1 ATAGTAAGCTCTAACGA
91011814 TTTGATATAT
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
21 2 0.04
22 15 0.29
23 17 0.33
24 17 0.33
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.23
Consensus pattern (22 bp):
ATAGTAAGCTCTAACGAGCTGA
Found at i:91011792 original size:45 final size:47
Alignment explanation
Indices: 91011728--91011843 Score: 114
Period size: 46 Copynumber: 2.4 Consensus size: 47
91011718 TAGCTGATAG
*
91011728 ATAGTAAGCTC-TATTGAGCTGA-AAC-GATAAGCTCTAACGAGGTGA-
1 ATAGTAAGCTCATA-CGAGCTGAGAACAG-TAAGCTCTAACGAGGTGAT
* * **
91011773 ATAGTAAGCTCATACGAGCTAAGAACAGTAAGCTCTTACGATTTGAT
1 ATAGTAAGCTCATACGAGCTGAGAACAGTAAGCTCTAACGAGGTGAT
91011820 ATATCGGTAAGCTCATACGAGCTG
1 ATA---GTAAGCTCATACGAGCTG
91011844 CGGTGAGTCC
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
45 17 0.29
46 20 0.34
47 4 0.07
50 17 0.29
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.26
Consensus pattern (47 bp):
ATAGTAAGCTCATACGAGCTGAGAACAGTAAGCTCTAACGAGGTGAT
Found at i:91018375 original size:18 final size:18
Alignment explanation
Indices: 91018352--91018387 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
91018342 TTCCTGGGTG
91018352 ATAGTCGATTATCAACTC
1 ATAGTCGATTATCAACTC
**
91018370 ATAGTCTTTTATCAACTC
1 ATAGTCGATTATCAACTC
91018388 TAACCATCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (18 bp):
ATAGTCGATTATCAACTC
Found at i:91035338 original size:13 final size:13
Alignment explanation
Indices: 91035320--91035346 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91035310 GCTCAGTAGG
91035320 GACACGCCCGTGT
1 GACACGCCCGTGT
91035333 GACACGCCCGTGT
1 GACACGCCCGTGT
91035346 G
1 G
91035347 CGATTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:91038818 original size:13 final size:13
Alignment explanation
Indices: 91038800--91038825 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
91038790 TCGACAAGGA
91038800 CACGCCCGTGTGC
1 CACGCCCGTGTGC
91038813 CACGCCCGTGTGC
1 CACGCCCGTGTGC
91038826 GATTGCTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.46, G:0.31, T:0.15
Consensus pattern (13 bp):
CACGCCCGTGTGC
Found at i:91046234 original size:21 final size:21
Alignment explanation
Indices: 91046220--91046300 Score: 117
Period size: 21 Copynumber: 3.8 Consensus size: 21
91046210 GACACATAAA
91046220 GTGCCTAAAACGACACACGAG
1 GTGCCTAAAACGACACACGAG
* *
91046241 GTGCCTGATACGACACACGAG
1 GTGCCTAAAACGACACACGAG
* *
91046262 GTGCCTGATACGACACACGAG
1 GTGCCTAAAACGACACACGAG
91046283 GTGCCTAAATACGACACA
1 GTGCCTAAA-ACGACACA
91046301 TAAAGTGCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
21 47 0.85
22 8 0.15
ACGTcount: A:0.33, C:0.28, G:0.25, T:0.14
Consensus pattern (21 bp):
GTGCCTAAAACGACACACGAG
Found at i:91046266 original size:42 final size:43
Alignment explanation
Indices: 91046206--91046310 Score: 140
Period size: 42 Copynumber: 2.5 Consensus size: 43
91046196 CCTGATCAGT
* *
91046206 ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCT-G
1 ATACGACACACAAAGTGCCTAAAACGACACACGAGGTGCCTAA
* * * *
91046248 ATACGACACACGAGGTGCCTGATACGACACACGAGGTGCCTAA
1 ATACGACACACAAAGTGCCTAAAACGACACACGAGGTGCCTAA
*
91046291 ATACGACACATAAAGTGCCT
1 ATACGACACACAAAGTGCCT
91046311 GATCGATAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 36 0.68
43 17 0.32
ACGTcount: A:0.36, C:0.27, G:0.22, T:0.15
Consensus pattern (43 bp):
ATACGACACACAAAGTGCCTAAAACGACACACGAGGTGCCTAA
Found at i:91046712 original size:15 final size:15
Alignment explanation
Indices: 91046683--91046740 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
91046673 TCATATATAT
91046683 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
*
91046699 TATAAATCCAATCAA
1 TATAAATTCAATCAA
* *
91046714 AATAATTTCAATCAA
1 TATAAATTCAATCAA
91046729 TATAAATTCAAT
1 TATAAATTCAAT
91046741 AAATTCATCG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
15 32 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:91051895 original size:7 final size:7
Alignment explanation
Indices: 91051863--91051894 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
91051853 TTCATATCTA
91051863 AATTTTC
1 AATTTTC
91051870 AATTTTC
1 AATTTTC
91051877 AATTTTC
1 AATTTTC
*
91051884 AATTCTC
1 AATTTTC
91051891 AATT
1 AATT
91051895 CAATTTCTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (7 bp):
AATTTTC
Found at i:91052114 original size:23 final size:21
Alignment explanation
Indices: 91052062--91052157 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
91052052 CCTGATCAGT
** * *
91052062 ATACGACACATAAAGTGCCTA
1 ATACGACACACGAGGTGCCTG
*
91052083 AAACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
91052104 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
91052125 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
91052146 AAATACGACACA
1 --ATACGACACA
91052158 TAAAGTGCCT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
21 57 0.85
23 10 0.15
ACGTcount: A:0.36, C:0.27, G:0.23, T:0.14
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:91052122 original size:42 final size:43
Alignment explanation
Indices: 91052062--91052167 Score: 142
Period size: 42 Copynumber: 2.5 Consensus size: 43
91052052 CCTGATCAGT
*
91052062 ATACGACACATAAAGTGCCTAAAACGACACACGAGGTGCCTG-
1 ATACGACACACAAAGTGCCTAAAACGACACACGAGGTGCCTGA
* * * *
91052104 ATACGACACACGAGGTGCCTGATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTAAAACGACACACGAGGTGCCTG-A
*
91052148 ATACGACACATAAAGTGCCT
1 ATACGACACACAAAGTGCCT
91052168 GATCGATAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
42 37 0.69
44 17 0.31
ACGTcount: A:0.36, C:0.26, G:0.23, T:0.15
Consensus pattern (43 bp):
ATACGACACACAAAGTGCCTAAAACGACACACGAGGTGCCTGA
Found at i:91052565 original size:15 final size:15
Alignment explanation
Indices: 91052540--91052597 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
91052530 TCATATATAT
91052540 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
91052556 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
91052571 AATAATTTCAATCAA
1 TATAAATTCAATCAA
91052586 TATAAATTCAAT
1 TATAAATTCAAT
91052598 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:91058543 original size:23 final size:23
Alignment explanation
Indices: 91058461--91058547 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
91058451 CCTGATCAGT
*
91058461 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
91058483 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
91058503 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
91058526 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
91058548 TCGATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:91058943 original size:15 final size:15
Alignment explanation
Indices: 91058918--91058975 Score: 82
Period size: 15 Copynumber: 3.8 Consensus size: 15
91058908 TCATATATAT
91058918 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
91058934 TATAAATTCAATCCAA
1 TATAAATTCAAT-CAA
*
91058950 -ATAATTTCAATCAA
1 TATAAATTCAATCAA
91058964 TATAAATTCAAT
1 TATAAATTCAAT
91058976 AAATTCATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
14 3 0.08
15 28 0.74
16 7 0.18
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:91064072 original size:39 final size:39
Alignment explanation
Indices: 91063992--91064163 Score: 233
Period size: 39 Copynumber: 4.4 Consensus size: 39
91063982 AGGATTTTAA
* * *
91063992 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAG-ATATATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTG-GTAT-TATAT
* *
91064030 CCGGGCTAATTCCCGAAGGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
91064069 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
*
91064108 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
91064147 CCGGGCTTAAAGTCCCG
1 CCGGGC-T-AAGTCCCG
91064164 CATGCTTTGT
Statistics
Matches: 121, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
38 19 0.16
39 90 0.74
40 4 0.03
41 8 0.07
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
Found at i:91077605 original size:44 final size:44
Alignment explanation
Indices: 91077535--91077619 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
91077525 ATTTCCGATA
* **
91077535 TCTGTTTTGCGTGTAAGACCACGTCTTCGATGTTGGCATCGACT
1 TCTGTTTTGCATGTAAGACCACGTCTTCGACATTGGCATCGACT
* * *
91077579 TCTGTTTTGCATGTAAGACTATGTCTTGGACATTGGCATCG
1 TCTGTTTTGCATGTAAGACCACGTCTTCGACATTGGCATCG
91077620 TATCTGATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.18, C:0.20, G:0.25, T:0.38
Consensus pattern (44 bp):
TCTGTTTTGCATGTAAGACCACGTCTTCGACATTGGCATCGACT
Found at i:91087710 original size:61 final size:61
Alignment explanation
Indices: 91087638--91087760 Score: 210
Period size: 61 Copynumber: 2.0 Consensus size: 61
91087628 TTGGTAAGTT
* *
91087638 TAGTTTTTATTATATGAACTTACTAAGCATGTAATGCTTACTCCGCTTTACTTTTTTCCTA
1 TAGTTTCTATTATATGAACTTACTAAGCATGTAATACTTACTCCGCTTTACTTTTTTCCTA
* *
91087699 TAGTTTCTATTATATGAACTTACTAAGCATGTAATACTTACTCCGTTTTATTTTTTTCCTA
1 TAGTTTCTATTATATGAACTTACTAAGCATGTAATACTTACTCCGCTTTACTTTTTTCCTA
91087760 T
1 T
91087761 TTTATAGTGC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.25, C:0.17, G:0.09, T:0.49
Consensus pattern (61 bp):
TAGTTTCTATTATATGAACTTACTAAGCATGTAATACTTACTCCGCTTTACTTTTTTCCTA
Found at i:91091280 original size:12 final size:12
Alignment explanation
Indices: 91091263--91091294 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
91091253 TAGTTAGAAA
91091263 AAGAAATTATTG
1 AAGAAATTATTG
91091275 AAGAAATTATTG
1 AAGAAATTATTG
91091287 AAGAAATT
1 AAGAAATT
91091295 GGGTAAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31
Consensus pattern (12 bp):
AAGAAATTATTG
Found at i:91097899 original size:18 final size:18
Alignment explanation
Indices: 91097865--91098160 Score: 191
Period size: 18 Copynumber: 16.1 Consensus size: 18
91097855 TCATTAACAA
* *
91097865 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAATTAT
* *
91097882 TCAGTAACAGTCACTTAT
1 TCAGTAACAATCAATTAT
*
91097900 TCGGTAACAATCAATTAT
1 TCAGTAACAATCAATTAT
* * * *
91097918 TCAATAATAACCAGTTAT
1 TCAGTAACAATCAATTAT
* *
91097936 TCAGTATCGATCAATTGATCGGTT
1 TCAGTAACAATCAATT-A-----T
*
91097960 ATCTAGTAACAGTCAATTAT
1 -TC-AGTAACAATCAATTAT
* *
91097980 TTAGTAA-AATCAAATAT
1 TCAGTAACAATCAATTAT
* *
91097997 TCAGTAGCAATTAAGTTAT
1 TCAGTAACAATCAA-TTAT
* *
91098016 TCAGTAACAGTCATTTAT
1 TCAGTAACAATCAATTAT
* * *
91098034 TTAGTGACAATCAGTTAT
1 TCAGTAACAATCAATTAT
**
91098052 TCAGTAATGATCAATTAT
1 TCAGTAACAATCAATTAT
* * *
91098070 TCAGTAATATTCAGTTAT
1 TCAGTAACAATCAATTAT
* *
91098088 TCAGTAACAGTCCATTAT
1 TCAGTAACAATCAATTAT
* *
91098106 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAATTAT
* *
91098124 TCGGTAACAGTCAATTAT
1 TCAGTAACAATCAATTAT
* *
91098142 TCAGTAATAATCAGTTAT
1 TCAGTAACAATCAATTAT
91098160 T
1 T
91098161 TTATACCTTT
Statistics
Matches: 213, Mismatches: 55, Indels: 21
0.74 0.19 0.07
Matches are distributed among these distances:
17 17 0.08
18 165 0.77
19 15 0.07
20 1 0.00
24 1 0.00
25 3 0.01
26 11 0.05
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (18 bp):
TCAGTAACAATCAATTAT
Found at i:91098093 original size:72 final size:71
Alignment explanation
Indices: 91097958--91098160 Score: 221
Period size: 72 Copynumber: 2.8 Consensus size: 71
91097948 AATTGATCGG
* * * * * *
91097958 TTATCTAGTAACAGTCAATTATTTAGTAAAATCAAATATTCAGTAGCA-ATTAAGTTATTCAGTA
1 TTATCCAGTAACAATCAATTATTCAGTAACATCAATTATTCAGTA--ATATTCAGTTATTCAGTA
91098022 ACAGT-CA
64 ACAGTCCA
** * * *
91098029 TTTATTTAGTGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAATATTCAGTTATTCAGTA
1 -TTATCCAGTAACAATCAATTATTCAGTAA-CATCAATTATTCAGTAATATTCAGTTATTCAGTA
91098094 ACAGTCCA
64 ACAGTCCA
* * *
91098102 TTATCCAGTAACAGTCAATTATTCGGTAACAGTCAATTATTCAGTAATAATCAGTTATT
1 TTATCCAGTAACAATCAATTATTCAGTAACA-TCAATTATTCAGTAATATTCAGTTATT
91098161 TTATACCTTT
Statistics
Matches: 111, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
71 2 0.02
72 93 0.84
73 16 0.14
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (71 bp):
TTATCCAGTAACAATCAATTATTCAGTAACATCAATTATTCAGTAATATTCAGTTATTCAGTAAC
AGTCCA
Found at i:91098428 original size:45 final size:44
Alignment explanation
Indices: 91098323--91098438 Score: 135
Period size: 45 Copynumber: 2.6 Consensus size: 44
91098313 AACAAATCTG
* *
91098323 GAATAGTTACAGTAACAGTAACAATATTCAACACACAAAGTGCT
1 GAATAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCT
* * * *
91098367 GAATTGATAGCGGTAACAGTAACAGTATTCGACACACAAAGTG-T
1 GAATAG-TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCT
*
91098411 CGAATCAGTAACAGTAACGGTAACAGTA
1 -GAAT-AGTAACAGTAACAGTAACAGTA
91098439 ACAGTAGTCA
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
44 6 0.10
45 52 0.88
46 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.22
Consensus pattern (44 bp):
GAATAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCT
Found at i:91099351 original size:7 final size:7
Alignment explanation
Indices: 91099339--91099459 Score: 134
Period size: 7 Copynumber: 16.4 Consensus size: 7
91099329 ATTAATTATT
91099339 GGTTTAG
1 GGTTTAG
91099346 GGTTTAG
1 GGTTTAG
91099353 GGTTTTAG
1 GG-TTTAG
91099361 GGTTTTAG
1 GG-TTTAG
*
91099369 GGTTTAT
1 GGTTTAG
91099376 GGTTTAAG
1 GGTTT-AG
*
91099384 AGTTTAG
1 GGTTTAG
91099391 GGTTTAG
1 GGTTTAG
*
91099398 GATTTAAG
1 GGTTT-AG
91099406 GGTTTAG
1 GGTTTAG
91099413 GGTTTTAG
1 GG-TTTAG
91099421 GGTTTAG
1 GGTTTAG
* *
91099428 TGCTTATG
1 GGTTTA-G
*
91099436 GTTTTAG
1 GGTTTAG
91099443 GGTTTAG
1 GGTTTAG
91099450 GGTTTAG
1 GGTTTAG
91099457 GGT
1 GGT
91099460 CATTGATTTA
Statistics
Matches: 97, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
7 60 0.62
8 37 0.38
ACGTcount: A:0.17, C:0.01, G:0.37, T:0.45
Consensus pattern (7 bp):
GGTTTAG
Found at i:91099361 original size:15 final size:14
Alignment explanation
Indices: 91099339--91099459 Score: 134
Period size: 15 Copynumber: 8.2 Consensus size: 14
91099329 ATTAATTATT
91099339 GGTTTAGGGTTTAG
1 GGTTTAGGGTTTAG
91099353 GGTTTTAGGGTTTTAG
1 GG-TTTAGGG-TTTAG
*
91099369 GGTTTATGGTTTAAG
1 GGTTTAGGGTTT-AG
*
91099384 AGTTTAGGGTTTAG
1 GGTTTAGGGTTTAG
*
91099398 GATTTAAGGGTTTAG
1 GGTTT-AGGGTTTAG
91099413 GGTTTTAGGGTTTAG
1 GG-TTTAGGGTTTAG
* * *
91099428 TGCTTATGGTTTTAG
1 GGTTTA-GGGTTTAG
91099443 GGTTTAGGGTTTAG
1 GGTTTAGGGTTTAG
91099457 GGT
1 GGT
91099460 CATTGATTTA
Statistics
Matches: 89, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
14 23 0.26
15 56 0.63
16 10 0.11
ACGTcount: A:0.17, C:0.01, G:0.37, T:0.45
Consensus pattern (14 bp):
GGTTTAGGGTTTAG
Found at i:91099381 original size:22 final size:22
Alignment explanation
Indices: 91099342--91099459 Score: 123
Period size: 22 Copynumber: 5.3 Consensus size: 22
91099332 AATTATTGGT
91099342 TTAGGGTTTAGGGTTTTAGGGTT
1 TTAGGGTTTAGGGTTTTAGGG-T
* * *
91099365 TTAGGGTTTATGGTTTAAGAGT
1 TTAGGGTTTAGGGTTTTAGGGT
* *
91099387 TTAGGGTTTAGGATTTAAGGGT
1 TTAGGGTTTAGGGTTTTAGGGT
* *
91099409 TTAGGGTTTTAGGG-TTTAGTGC
1 TTAGGG-TTTAGGGTTTTAGGGT
*
91099431 TTATGGTTTTAGGG-TTTAGGGT
1 TTA-GGGTTTAGGGTTTTAGGGT
91099453 TTAGGGT
1 TTAGGGT
91099460 CATTGATTTA
Statistics
Matches: 79, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
21 3 0.04
22 50 0.63
23 26 0.33
ACGTcount: A:0.17, C:0.01, G:0.36, T:0.46
Consensus pattern (22 bp):
TTAGGGTTTAGGGTTTTAGGGT
Found at i:91100285 original size:5 final size:5
Alignment explanation
Indices: 91100275--91100332 Score: 107
Period size: 5 Copynumber: 11.6 Consensus size: 5
91100265 TTACTTATTT
*
91100275 ATATA ATATA ATATA ATACA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
91100325 ATATA ATA
1 ATATA ATA
91100333 ACAATTTCTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 51 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:91100464 original size:21 final size:22
Alignment explanation
Indices: 91100425--91100477 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
91100415 CATACAATTG
*
91100425 TTAAAATAATATTATAATATCA
1 TTAAAATAATATTACAATATCA
*
91100447 TTAATATAA-ATTACAATAT-A
1 TTAAAATAATATTACAATATCA
*
91100467 ATAAAATAATA
1 TTAAAATAATA
91100478 AATAATACAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 8 0.31
21 10 0.38
22 8 0.31
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (22 bp):
TTAAAATAATATTACAATATCA
Found at i:91104264 original size:24 final size:24
Alignment explanation
Indices: 91104236--91104287 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
91104226 TTAGTAGGTC
** *
91104236 AAATAAACTATGTTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
91104260 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
91104284 AAAT
1 AAAT
91104288 CTTCTAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:91106706 original size:25 final size:25
Alignment explanation
Indices: 91106674--91106734 Score: 122
Period size: 25 Copynumber: 2.4 Consensus size: 25
91106664 TCTCTAGTGC
91106674 GCTCTCTATTTTCTAGCATGTTTGT
1 GCTCTCTATTTTCTAGCATGTTTGT
91106699 GCTCTCTATTTTCTAGCATGTTTGT
1 GCTCTCTATTTTCTAGCATGTTTGT
91106724 GCTCTCTATTT
1 GCTCTCTATTT
91106735 AGCATGCTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.11, C:0.21, G:0.15, T:0.52
Consensus pattern (25 bp):
GCTCTCTATTTTCTAGCATGTTTGT
Found at i:91106740 original size:22 final size:24
Alignment explanation
Indices: 91106674--91106748 Score: 109
Period size: 25 Copynumber: 3.1 Consensus size: 24
91106664 TCTCTAGTGC
91106674 GCTCTCTATTTTCTAGCATGTTTGT
1 GCTCTCTA-TTTCTAGCATGTTTGT
91106699 GCTCTCTATTTTCTAGCATGTTTGT
1 GCTCTCTA-TTTCTAGCATGTTTGT
*
91106724 GCTCTCTA-TT-TAGCATGCTTGT
1 GCTCTCTATTTCTAGCATGTTTGT
91106746 GCT
1 GCT
91106749 TTGTATAGCA
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
22 14 0.29
23 2 0.04
25 33 0.67
ACGTcount: A:0.12, C:0.21, G:0.17, T:0.49
Consensus pattern (24 bp):
GCTCTCTATTTCTAGCATGTTTGT
Found at i:91118685 original size:16 final size:16
Alignment explanation
Indices: 91118649--91118703 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
91118639 GTTTGGTTCA
* *
91118649 CTGTAATGGAATAGGG
1 CTGTAATAGAATAGAG
* *
91118665 TTGTAATTGAATAGAG
1 CTGTAATAGAATAGAG
*
91118681 CTGTAATAGAACAGAG
1 CTGTAATAGAATAGAG
91118697 CTGTAAT
1 CTGTAAT
91118704 CAGTAATTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.29
Consensus pattern (16 bp):
CTGTAATAGAATAGAG
Found at i:91119030 original size:21 final size:21
Alignment explanation
Indices: 91118999--91119040 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
91118989 ATGAATTAAA
91118999 AAAACATAATATATAATACTAT
1 AAAACATAATATATAAT-CTAT
91119021 AAAA-ATAATATATAATCTAT
1 AAAACATAATATATAATCTAT
91119041 TTTATTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAACATAATATATAATCTAT
Found at i:91121495 original size:5 final size:5
Alignment explanation
Indices: 91121474--91121520 Score: 55
Period size: 5 Copynumber: 9.8 Consensus size: 5
91121464 AATTATAAAG
*
91121474 TATAT TATTAT TTTAT TATAT TA-AT TATAT TATA- T-TAT TATAT TATA
1 TATAT TA-TAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
91121521 AATAAATCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
3 2 0.06
4 6 0.17
5 24 0.67
6 4 0.11
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TATAT
Found at i:91121514 original size:8 final size:8
Alignment explanation
Indices: 91121474--91121519 Score: 60
Period size: 8 Copynumber: 6.0 Consensus size: 8
91121464 AATTATAAAG
91121474 TATATTAT
1 TATATTAT
*
91121482 TATTTTAT
1 TATATTAT
*
91121490 TATATTAA
1 TATATTAT
91121498 T-TA-TAT
1 TATATTAT
91121504 TATATTAT
1 TATATTAT
91121512 TATATTAT
1 TATATTAT
91121520 AAATAAATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
6 3 0.09
7 4 0.12
8 25 0.78
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
TATATTAT
Found at i:91126064 original size:50 final size:52
Alignment explanation
Indices: 91125976--91126095 Score: 127
Period size: 50 Copynumber: 2.3 Consensus size: 52
91125966 AGCTAATCCA
* * * *
91125976 ACCAAGAACACCCTTGGGCACCAAATGCCTAGCCCGTAGGC-TAACATCT-C
1 ACCAAAAACACGCTAGGGCACCAAATGCCAAGCCCGTAGGCTTAACATCTGC
* * * * *
91126026 TCCAAAAACACGCTAGGGCTCCAAGTGCCAAGCTCGTAGGCTTTACATCTGC
1 ACCAAAAACACGCTAGGGCACCAAATGCCAAGCCCGTAGGCTTAACATCTGC
*
91126078 ACCTAAAAACACGTTAGG
1 ACC-AAAAACACGCTAGG
91126096 ATCATTATAC
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
50 33 0.59
51 7 0.12
52 3 0.05
53 13 0.23
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (52 bp):
ACCAAAAACACGCTAGGGCACCAAATGCCAAGCCCGTAGGCTTAACATCTGC
Found at i:91136644 original size:63 final size:62
Alignment explanation
Indices: 91136577--91136695 Score: 157
Period size: 62 Copynumber: 1.9 Consensus size: 62
91136567 AATATACCTG
* *
91136577 CAGAAGGTGTTGATGCAGGGCACAATGGTTCATAGTGTGGTGCTTGTGTAAAAATAACAGGTA
1 CAGAAGGTGTTGATGCA-AGCACAATGGTGCATAGTGTGGTGCTTGTGTAAAAATAACAGGTA
* * *** *
91136640 CAGAATGTGTTGATGCAAGTATGGTGGTGCATAGTGTGGTGTTTGTGTAAAAATAA
1 CAGAAGGTGTTGATGCAAGCACAATGGTGCATAGTGTGGTGCTTGTGTAAAAATAA
91136696 TGAAGTTAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
62 32 0.67
63 16 0.33
ACGTcount: A:0.29, C:0.08, G:0.32, T:0.30
Consensus pattern (62 bp):
CAGAAGGTGTTGATGCAAGCACAATGGTGCATAGTGTGGTGCTTGTGTAAAAATAACAGGTA
Found at i:91139820 original size:27 final size:27
Alignment explanation
Indices: 91139785--91139897 Score: 133
Period size: 27 Copynumber: 4.2 Consensus size: 27
91139775 AGCATGGCTG
* *
91139785 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
91139811 CCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
91139839 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
* *
91139866 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
91139893 CCAGA
1 CCAGA
91139898 ACGCTTCCTC
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
26 4 0.05
27 57 0.74
28 16 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:91139844 original size:54 final size:54
Alignment explanation
Indices: 91139785--91139899 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
91139775 AGCATGGCTG
*
91139785 CCAGAACAGATA-ATGTGACAGAGTCACCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAAAT-CAGATAATCGTGGCAGAGCCA
* * * * *
91139839 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAAATCAGATAATCGTGGCAGAGCCA
91139893 CCAGAAC
1 CCAGAAC
91139900 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAAATCAGATAATCGTGGCAGAGCCA
Found at i:91141556 original size:26 final size:26
Alignment explanation
Indices: 91141518--91141731 Score: 374
Period size: 26 Copynumber: 8.2 Consensus size: 26
91141508 CATGAAATTC
* *
91141518 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
91141544 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
91141570 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
91141596 TTATCATGGAACATTTACCTGACCTA
1 TTATCATGGAACATTTACCTAACCTA
* *
91141622 TTATCATGAAACATTTACCCAACCTA
1 TTATCATGGAACATTTACCTAACCTA
91141648 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
91141674 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
91141700 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
91141726 TTATCA
1 TTATCA
91141732 ATTTGTACCA
Statistics
Matches: 179, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 179 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:91145001 original size:104 final size:104
Alignment explanation
Indices: 91144875--91145098 Score: 360
Period size: 104 Copynumber: 2.2 Consensus size: 104
91144865 AATGGATATC
*
91144875 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCAGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
** *
91144940 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACACAGCACCACCAATAAACCGGGGAATCA
91144979 GCACTTAGCAACCCCTCAGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCAGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
91145044 GGATCACGCACACAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACACAGCACCACCAATAAACCGGGGAATCA
**
91145083 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
91145099 TTTATATACA
Statistics
Matches: 111, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
104 110 0.99
105 1 0.01
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.17
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCAGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACACAGCACCACCAATAAACCGGGGAATCA
Found at i:91145459 original size:29 final size:29
Alignment explanation
Indices: 91145426--91145489 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
91145416 TAATCCACCA
91145426 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
91145455 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
91145485 CCCAA
1 CCCAA
91145490 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:91145463 original size:30 final size:30
Alignment explanation
Indices: 91145433--91145489 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
91145423 CCACCCAACT
91145433 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
91145462 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
91145490 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:91149908 original size:40 final size:40
Alignment explanation
Indices: 91149848--91150058 Score: 268
Period size: 40 Copynumber: 5.3 Consensus size: 40
91149838 CATTTGAATG
*
91149848 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
91149887 TTATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
91149927 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
91149967 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * *
91150007 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
91150047 ATATCC-GGCTAA
1 ATATCCGGGCTAA
91150059 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 14, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
39 12 0.08
40 139 0.90
41 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:91157149 original size:18 final size:18
Alignment explanation
Indices: 91157115--91157191 Score: 66
Period size: 18 Copynumber: 4.3 Consensus size: 18
91157105 TCATTAACAA
*
91157115 TCAG-AACAATTATTTAT
1 TCAGTAACAATTAGTTAT
*
91157132 TCAGTAACAGTTAGTTAT
1 TCAGTAACAATTAGTTAT
* * *
91157150 TCGGTAACAATCAATTAT
1 TCAGTAACAATTAGTTAT
* * **
91157168 TCAATAATAACCAGTTAT
1 TCAGTAACAATTAGTTAT
91157186 TCAGTA
1 TCAGTA
91157192 TTGATCAATT
Statistics
Matches: 47, Mismatches: 12, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
17 4 0.09
18 43 0.91
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.36
Consensus pattern (18 bp):
TCAGTAACAATTAGTTAT
Found at i:91157236 original size:18 final size:18
Alignment explanation
Indices: 91157215--91157249 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
91157205 TGGTTATCCA
91157215 GTAACAGTCAATTATTCG
1 GTAACAGTCAATTATTCG
*
91157233 GTAATAGTCAATTATTC
1 GTAACAGTCAATTATTC
91157250 AGAAATAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (18 bp):
GTAACAGTCAATTATTCG
Found at i:91157256 original size:18 final size:18
Alignment explanation
Indices: 91157220--91157266 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
91157210 ATCCAGTAAC
* *
91157220 AGTCAATTATTCGGTAAT
1 AGTCAATTATTCAGAAAT
91157238 AGTCAATTATTCAGAAAT
1 AGTCAATTATTCAGAAAT
* *
91157256 AATCAGTTATT
1 AGTCAATTATT
91157267 TTATACCTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (18 bp):
AGTCAATTATTCAGAAAT
Found at i:91157502 original size:45 final size:45
Alignment explanation
Indices: 91157430--91157538 Score: 157
Period size: 45 Copynumber: 2.4 Consensus size: 45
91157420 ACAAATCCGA
**
91157430 AACAGTAACAGTAACAGTATTCAACACACAAAGTGTTGAATCGAT
1 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGAT
* * *
91157475 AACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCGGT
1 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGAT
91157520 AACAGTAAC-GATAACAGTA
1 AACAGTAACAG-TAACAGTA
91157539 ACAGTAGTCG
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 1 0.02
45 56 0.98
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.19
Consensus pattern (45 bp):
AACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGAT
Found at i:91159367 original size:22 final size:23
Alignment explanation
Indices: 91159324--91159376 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
91159314 AAATATTAAA
* *
91159324 ATATTTATTATTTATACATGTAT
1 ATATTTATTATATACACATGTAT
91159347 ATATTTATTA-ATACACATGTAT
1 ATATTTATTATATACACATGTAT
91159369 -TCATTTAT
1 AT-ATTTAT
91159377 CACCTTACAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 1 0.04
22 16 0.59
23 10 0.37
ACGTcount: A:0.36, C:0.08, G:0.04, T:0.53
Consensus pattern (23 bp):
ATATTTATTATATACACATGTAT
Found at i:91169808 original size:44 final size:44
Alignment explanation
Indices: 91169760--91169904 Score: 129
Period size: 44 Copynumber: 3.3 Consensus size: 44
91169750 AGCCTTAACC
91169760 CCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCT
1 CCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCT
* * ** * *
91169804 CCCTAAGCAGTAGTGG-AGC-GGATCGAAGACGGT-GAG-CCTTATC-
1 CCCTAAGCAGTAG-GGAAACAGGCT-GAA-A-ATTACAGATCTTATCT
* *
91169847 CTCCTAAGCAATAGGGAAACAGGCTGGAAATTACAGATCTTATCT
1 C-CCTAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCT
*
91169892 CCTTAAGCAGTAG
1 CCCTAAGCAGTAG
91169905 TGGAGCGGAT
Statistics
Matches: 75, Mismatches: 16, Indels: 20
0.68 0.14 0.18
Matches are distributed among these distances:
42 1 0.01
43 9 0.12
44 55 0.73
45 9 0.12
46 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.22
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCT
Found at i:91169811 original size:88 final size:88
Alignment explanation
Indices: 91169660--91169999 Score: 425
Period size: 88 Copynumber: 3.9 Consensus size: 88
91169650 AAAAAATTCA
* * * *
91169660 TGAGCCTTAATCCCCTAAGCAGTAGGGCAACAGGCTAAAAATTACAAATCTTATCTCCTTAAGCA
1 TGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAAATCTTATCTCCCTAAGCA
*
91169725 GTAGTGGAGCAGATCGAGGACGG
66 GTAGTGGAGCAGATCGAAGACGG
*
91169748 TGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCA
1 TGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAAATCTTATCTCCCTAAGCA
*
91169813 GTAGTGGAGCGGATCGAAGACGG
66 GTAGTGGAGCAGATCGAAGACGG
* * * * * *
91169836 TGAGCCTTATCCTCCTAAGCAATAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCTTAAGCA
1 TGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAAATCTTATCTCCCTAAGCA
*
91169901 GTAGTGGAGCGGATCGAAGAC--
66 GTAGTGGAGCAGATCGAAGACGG
* * * * ** * * **
91169922 T-AGCCTTATCCCCTTAAGTAGTAAGGAAATGGGCTGAAGATTACAAATCATATCTTTCTAAGCA
1 TGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAAATCTTATCTCCCTAAGCA
* *
91169986 ATAGCGGAGCAGAT
66 GTAGTGGAGCAGAT
91170000 TGAAACGAAA
Statistics
Matches: 223, Mismatches: 29, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
85 60 0.27
86 1 0.00
88 162 0.73
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.23
Consensus pattern (88 bp):
TGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGAAAATTACAAATCTTATCTCCCTAAGCA
GTAGTGGAGCAGATCGAAGACGG
Found at i:91173121 original size:24 final size:23
Alignment explanation
Indices: 91173086--91173137 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 23
91173076 GTCGTTATAT
* * *
91173086 AAAAA-GTTAAAATAGATAATAA
1 AAAAATGTAAAAATAAAAAATAA
91173108 CAAAAATGTAAAAATAAAAAATAA
1 -AAAAATGTAAAAATAAAAAATAA
91173132 AAAAAT
1 AAAAAT
91173138 AACATTTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 11 0.44
24 14 0.56
ACGTcount: A:0.73, C:0.02, G:0.06, T:0.19
Consensus pattern (23 bp):
AAAAATGTAAAAATAAAAAATAA
Found at i:91173196 original size:26 final size:26
Alignment explanation
Indices: 91173165--91173225 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
91173155 AAACCAAATT
*
91173165 ATATATATACATATTTAAAATAGATAAA
1 ATATATAT-CA-ATTTAAAATAAATAAA
* * *
91173193 ATATATATGAATTTCAAATAAATAAT
1 ATATATATCAATTTAAAATAAATAAA
91173219 ATATATA
1 ATATATA
91173226 AAAATATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 20 0.69
27 1 0.03
28 8 0.28
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (26 bp):
ATATATATCAATTTAAAATAAATAAA
Found at i:91184367 original size:5 final size:5
Alignment explanation
Indices: 91184357--91184381 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
91184347 TATGGATGTT
91184357 TATTG TATTG TATTG TATTG TATTG
1 TATTG TATTG TATTG TATTG TATTG
91184382 AAAATATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
TATTG
Found at i:91185018 original size:10 final size:10
Alignment explanation
Indices: 91185003--91185033 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
91184993 CTGCTGGAAT
*
91185003 TGAAGAAAAA
1 TGAAGAGAAA
91185013 TGAAGAGAAA
1 TGAAGAGAAA
91185023 TGAAGAGAAA
1 TGAAGAGAAA
91185033 T
1 T
91185034 CTAGATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.26, T:0.13
Consensus pattern (10 bp):
TGAAGAGAAA
Found at i:91187287 original size:14 final size:14
Alignment explanation
Indices: 91187268--91187294 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
91187258 TAGAAATGTC
91187268 ATAAGAAAATTTTG
1 ATAAGAAAATTTTG
91187282 ATAAGAAAATTTT
1 ATAAGAAAATTTT
91187295 ATCGATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (14 bp):
ATAAGAAAATTTTG
Found at i:91193210 original size:43 final size:43
Alignment explanation
Indices: 91193145--91193295 Score: 241
Period size: 43 Copynumber: 3.5 Consensus size: 43
91193135 AATGTGACAT
*
91193145 TCGGGCTTTGAGCCTAGCAGGCTATAATACCGGTGAGATGATA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATACCGGTGAGATGATA
*
91193188 TCGGGCTTCGAGCCTAGGAGGCTATAATACCGGTGAGATGATA
1 TCGGGCTTCGAGCCTAGCAGGCTATAATACCGGTGAGATGATA
* *
91193231 TCAGGCTTCG-GACCTAGCAGGCTATAATACCGGCGAGATGATA
1 TCGGGCTTCGAG-CCTAGCAGGCTATAATACCGGTGAGATGATA
*
91193274 TCGGGTTTCGAGCCTAGCAGGC
1 TCGGGCTTCGAGCCTAGCAGGC
91193296 AAAATGTCGA
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
42 1 0.01
43 97 0.98
44 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (43 bp):
TCGGGCTTCGAGCCTAGCAGGCTATAATACCGGTGAGATGATA
Found at i:91193906 original size:16 final size:18
Alignment explanation
Indices: 91193875--91193907 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
91193865 AACTCGTCAC
91193875 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
91193893 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
91193908 AATTCGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:91195098 original size:21 final size:21
Alignment explanation
Indices: 91195072--91195113 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
91195062 AAAGAGATGA
91195072 AATTGTCAGCACTTATGTTGT
1 AATTGTCAGCACTTATGTTGT
*
91195093 AATTGTCGGCACTTATGTTGT
1 AATTGTCAGCACTTATGTTGT
91195114 TGACAAGACG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.43
Consensus pattern (21 bp):
AATTGTCAGCACTTATGTTGT
Found at i:91202803 original size:18 final size:18
Alignment explanation
Indices: 91202782--91202816 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
91202772 ATTAAAAATA
91202782 TTAAAAATAATTTTTATT
1 TTAAAAATAATTTTTATT
91202800 TTAAAAATAATTTTTAT
1 TTAAAAATAATTTTTAT
91202817 ACTTTTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TTAAAAATAATTTTTATT
Found at i:91202829 original size:20 final size:19
Alignment explanation
Indices: 91202786--91202845 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
91202776 AAAATATTAA
**
91202786 AAATAATTTTTAT-TTTAA
1 AAATAATTTTTATATTTTT
91202804 AAATAATTTTTATACTTTTT
1 AAATAATTTTTATA-TTTTT
* *
91202824 AAATAAGTTTAATAATTTTT
1 AAATAATTTTTAT-ATTTTT
91202844 AA
1 AA
91202846 TTTTAAATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
18 13 0.37
20 21 0.60
21 1 0.03
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (19 bp):
AAATAATTTTTATATTTTT
Found at i:91203015 original size:17 final size:16
Alignment explanation
Indices: 91202974--91203006 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
91202964 CATCTATTTT
91202974 AAAAAAATTTAATAAA
1 AAAAAAATTTAATAAA
91202990 AAAACAAATTTAA-AAA
1 AAAA-AAATTTAATAAA
91203006 A
1 A
91203007 CTAAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAAAAATTTAATAAA
Found at i:91203532 original size:10 final size:11
Alignment explanation
Indices: 91203506--91203532 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
91203496 AATTCGCATG
91203506 ATTTTTCTAAT
1 ATTTTTCTAAT
91203517 ATTTTTCTAAT
1 ATTTTTCTAAT
91203528 ATTTT
1 ATTTT
91203533 ATTATAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (11 bp):
ATTTTTCTAAT
Found at i:91205400 original size:13 final size:13
Alignment explanation
Indices: 91205382--91205408 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91205372 TATAATTGTG
91205382 TGTGTATATATAT
1 TGTGTATATATAT
91205395 TGTGTATATATAT
1 TGTGTATATATAT
91205408 T
1 T
91205409 ATATGCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (13 bp):
TGTGTATATATAT
Found at i:91208388 original size:46 final size:44
Alignment explanation
Indices: 91208246--91208388 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 44
91208236 CCCACCCCTA
91208246 AGTGAACTCGGACTC-ACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
** * * *
91208292 CA-CAAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
91208338 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
91208384 AGTGA
1 AGTGA
91208389 CATGTCACTT
Statistics
Matches: 77, Mismatches: 11, Indels: 17
0.73 0.10 0.16
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 43 0.56
47 19 0.25
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:91209661 original size:37 final size:37
Alignment explanation
Indices: 91209611--91209685 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
91209601 TAAGAGGTGG
91209611 AATCGTTAAAATTGCATGAGTCTAATGATCATGAAGC
1 AATCGTTAAAATTGCATGAGTCTAATGATCATGAAGC
*
91209648 AATCGTTAAAATTGCATGAGTCTAATTATCATGAAGC
1 AATCGTTAAAATTGCATGAGTCTAATGATCATGAAGC
91209685 A
1 A
91209686 CAACATTTCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (37 bp):
AATCGTTAAAATTGCATGAGTCTAATGATCATGAAGC
Found at i:91210873 original size:56 final size:56
Alignment explanation
Indices: 91210787--91210906 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
91210777 ACAAGGGATG
91210787 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
91210843 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
91210899 ATGGGCAA
1 ATGGGCAA
91210907 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:91212252 original size:80 final size:80
Alignment explanation
Indices: 91212034--91212257 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
91212024 TCGAATGATG
* * * * *
91212034 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
91212097 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
91212114 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
91212176 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
91212192 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
91212257 G
66 G
91212258 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:91212271 original size:40 final size:40
Alignment explanation
Indices: 91212034--91212257 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
91212024 TCGAATGATG
* * * *
91212034 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
91212074 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
91212114 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
91212152 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
91212192 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
91212233 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
91212258 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:91215378 original size:29 final size:30
Alignment explanation
Indices: 91215314--91215378 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
91215304 AATAGACACA
91215314 CAACTATTCAATTTGTTCTATTTTAATCAT
1 CAACTATTCAATTTGTTCTATTTTAATCAT
* *
91215344 CTAACTATT-AATTTTTTC-ATTTTAGTCACT
1 C-AACTATTCAATTTGTTCTATTTTAATCA-T
91215374 CAACT
1 CAACT
91215379 TTTTCAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 13 0.42
30 11 0.35
31 7 0.23
ACGTcount: A:0.29, C:0.18, G:0.03, T:0.49
Consensus pattern (30 bp):
CAACTATTCAATTTGTTCTATTTTAATCAT
Found at i:91215799 original size:47 final size:47
Alignment explanation
Indices: 91215730--91215820 Score: 164
Period size: 47 Copynumber: 1.9 Consensus size: 47
91215720 GGAAGTTGAA
* *
91215730 AATATCAAATGTCATGGCCTTGACCTGTTATCTCTTTTCAATACTTC
1 AATATCAAATGTCACGGCCTTGACCTGTTATCTCTCTTCAATACTTC
91215777 AATATCAAATGTCACGGCCTTGACCTGTTATCTCTCTTCAATAC
1 AATATCAAATGTCACGGCCTTGACCTGTTATCTCTCTTCAATAC
91215821 CTGAGCTAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.37
Consensus pattern (47 bp):
AATATCAAATGTCACGGCCTTGACCTGTTATCTCTCTTCAATACTTC
Found at i:91216152 original size:26 final size:28
Alignment explanation
Indices: 91216108--91216163 Score: 80
Period size: 26 Copynumber: 2.0 Consensus size: 28
91216098 TAAAATACAT
91216108 AAAGTAAATATAAATTAAAAATTTTAAAG
1 AAAGTAAATAT-AATTAAAAATTTTAAAG
*
91216137 AAAGTAAATAT-A-TAAAGATTTTAAAG
1 AAAGTAAATATAATTAAAAATTTTAAAG
91216163 A
1 A
91216164 TTTTTTAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 14 0.54
27 1 0.04
29 11 0.42
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (28 bp):
AAAGTAAATATAATTAAAAATTTTAAAG
Found at i:91244185 original size:32 final size:31
Alignment explanation
Indices: 91244125--91244186 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 31
91244115 ATGGTTATTA
* *
91244125 AATTATTATTTTTTATTTATTTTGGTCACTT
1 AATTATTATTTTTTATTTAATTTAGTCACTT
91244156 AATTATTAATTTTTT-TTTCAATTTAGTCACT
1 AATTATT-ATTTTTTATTT-AATTTAGTCACT
91244187 AAACTTTCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 10 0.37
32 17 0.63
ACGTcount: A:0.26, C:0.08, G:0.05, T:0.61
Consensus pattern (31 bp):
AATTATTATTTTTTATTTAATTTAGTCACTT
Found at i:91248873 original size:20 final size:21
Alignment explanation
Indices: 91248848--91248889 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
91248838 AATTTATCAA
91248848 TTTAAAAATATTT-TAACTTT
1 TTTAAAAATATTTATAACTTT
91248868 TTTAAAAATATTTATAACTTT
1 TTTAAAAATATTTATAACTTT
91248889 T
1 T
91248890 ACAAATCTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTAAAAATATTTATAACTTT
Found at i:91249059 original size:23 final size:23
Alignment explanation
Indices: 91249029--91249074 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
91249019 AAACTCGAAT
* *
91249029 TCAAACCACATGGGCAGTGAACA
1 TCAAACCACATGAGCAATGAACA
91249052 TCAAACCACATGAGCAATGAACA
1 TCAAACCACATGAGCAATGAACA
91249075 CCTTGACCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.26, G:0.17, T:0.13
Consensus pattern (23 bp):
TCAAACCACATGAGCAATGAACA
Found at i:91251561 original size:12 final size:12
Alignment explanation
Indices: 91251513--91251587 Score: 51
Period size: 12 Copynumber: 6.0 Consensus size: 12
91251503 TGGTGATAAC
* *
91251513 GAAGACGAACAG
1 GAAGAGGAAGAG
*
91251525 GAAGTGGAAGAG
1 GAAGAGGAAGAG
*
91251537 CAGAACGAAGAAGAG
1 --GAA-GAGGAAGAG
* *
91251552 GAAGACGAAGAA
1 GAAGAGGAAGAG
*
91251564 GAAGAGGAGGAG
1 GAAGAGGAAGAG
*
91251576 GAGGAGGAAGAG
1 GAAGAGGAAGAG
91251588 TTTTCTTTTG
Statistics
Matches: 48, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
12 35 0.73
13 3 0.06
14 3 0.06
15 7 0.15
ACGTcount: A:0.48, C:0.07, G:0.44, T:0.01
Consensus pattern (12 bp):
GAAGAGGAAGAG
Found at i:91252000 original size:15 final size:15
Alignment explanation
Indices: 91251980--91252009 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
91251970 TAAGCCATCA
91251980 TTCCTCCTCTTCTTC
1 TTCCTCCTCTTCTTC
91251995 TTCCTCCTCTTCTTC
1 TTCCTCCTCTTCTTC
91252010 GTCGGTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (15 bp):
TTCCTCCTCTTCTTC
Found at i:91256225 original size:29 final size:28
Alignment explanation
Indices: 91256163--91256227 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 28
91256153 GGCTATTACA
*
91256163 AATTGTTTTGGATTTTTATAAGTTTCTAT
1 AATT-TTTTGGAGTTTTATAAGTTTCTAT
* *
91256192 GATTTTTTGGAAGTTTTATAA-TTATTTAT
1 AATTTTTTGG-AGTTTTATAAGTT-TCTAT
91256221 AATTTTT
1 AATTTTT
91256228 AATAATTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
28 8 0.27
29 22 0.73
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (28 bp):
AATTTTTTGGAGTTTTATAAGTTTCTAT
Found at i:91256354 original size:21 final size:21
Alignment explanation
Indices: 91256288--91256363 Score: 72
Period size: 20 Copynumber: 3.8 Consensus size: 21
91256278 TTTTTTAAAT
91256288 ATTTTTATAA-TTTATTA-GA
1 ATTTTTATAATTTTATTATGA
* *
91256307 ATATTATATAAGTTT-TTAT-A
1 AT-TTTTATAATTTTATTATGA
*
91256327 ATATTTATAATTTTATTATGA
1 ATTTTTATAATTTTATTATGA
91256348 ATTTTTACT-ATTTTAT
1 ATTTTTA-TAATTTTAT
91256364 AAGTTTATAT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
19 11 0.24
20 17 0.37
21 17 0.37
22 1 0.02
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (21 bp):
ATTTTTATAATTTTATTATGA
Found at i:91256367 original size:48 final size:49
Alignment explanation
Indices: 91256308--91256403 Score: 124
Period size: 48 Copynumber: 2.0 Consensus size: 49
91256298 TTTATTAGAA
* *
91256308 TATTATATAAGTTTTTATAATA-TTT-ATAATTTTATTATGAATTTTTAC
1 TATTATATAAGTTTATATAAAATTTTAATAATTTTATT-TGAATTTTTAC
* * *
91256356 TATTTTATAAGTTTATATAAAATTTTAATATTTTTATTTTAATTTTTA
1 TATTATATAAGTTTATATAAAATTTTAATAATTTTATTTGAATTTTTA
91256404 AAAATTTTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
48 19 0.46
49 12 0.29
50 10 0.24
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.60
Consensus pattern (49 bp):
TATTATATAAGTTTATATAAAATTTTAATAATTTTATTTGAATTTTTAC
Found at i:91256381 original size:28 final size:29
Alignment explanation
Indices: 91256325--91256389 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 29
91256315 TAAGTTTTTA
* * *
91256325 TAATA-TTTATAATTTTATTATGAATTTT
1 TAATATTTTATAAGTTTATTATAAAATTT
*
91256353 TACTATTTTATAAGTTTA-TATAAAATTT
1 TAATATTTTATAAGTTTATTATAAAATTT
91256381 TAATATTTT
1 TAATATTTT
91256390 TATTTTAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 20 0.65
29 11 0.35
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (29 bp):
TAATATTTTATAAGTTTATTATAAAATTT
Found at i:91256411 original size:50 final size:50
Alignment explanation
Indices: 91256280--91256411 Score: 123
Period size: 48 Copynumber: 2.7 Consensus size: 50
91256270 AGATTTTATT
* * *
91256280 TTTTAAATATTTTTA---TAATTTATTAGAATATTATATAAGTTTTTATAATA
1 TTTT-AATATTTTTATTTTAATTT-TTA-AATATTTTATAAGTTTATATAAAA
* * *
91256330 -TTT-ATAATTTTATTATGAATTTTT-ACTATTTTATAAGTTTATATAAAA
1 TTTTAATATTTTTATT-TTAATTTTTAAATATTTTATAAGTTTATATAAAA
*
91256378 TTTTAATATTTTTATTTTAATTTTTAAAAATTTT
1 TTTTAATATTTTTATTTTAATTTTTAAATATTTT
91256412 TAATGTTATT
Statistics
Matches: 65, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
47 8 0.12
48 20 0.31
49 14 0.22
50 18 0.28
51 5 0.08
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (50 bp):
TTTTAATATTTTTATTTTAATTTTTAAATATTTTATAAGTTTATATAAAA
Found at i:91256626 original size:29 final size:29
Alignment explanation
Indices: 91256591--91256656 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
91256581 TTAATGATAA
91256591 TGGCTCAATTAGGTGCAAATTTAGTGTAG
1 TGGCTCAATTAGGTGCAAATTTAGTGTAG
* *
91256620 -GAGCTCAATTGGGTGCAGATTTAGTGTAG
1 TG-GCTCAATTAGGTGCAAATTTAGTGTAG
91256649 TGGCTCAA
1 TGGCTCAA
91256657 GTGATTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 1 0.03
29 31 0.94
30 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.32
Consensus pattern (29 bp):
TGGCTCAATTAGGTGCAAATTTAGTGTAG
Found at i:91258034 original size:19 final size:20
Alignment explanation
Indices: 91257993--91258034 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
91257983 CAACATCAAC
** *
91257993 AAATAATTTAAAAATTATGA
1 AAATAATTTAAAAAAAATAA
91258013 AAAT-ATTTAAAAAAAATAA
1 AAATAATTTAAAAAAAATAA
91258032 AAA
1 AAA
91258035 ATAAATAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (20 bp):
AAATAATTTAAAAAAAATAA
Found at i:91258216 original size:21 final size:21
Alignment explanation
Indices: 91258176--91258215 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
91258166 AAAAGTTGCT
*
91258176 GGTTAAATTTAGTAAAAAAAG
1 GGTTAAATTTAATAAAAAAAG
91258197 GGTTAAA-TTAATAAAAAAA
1 GGTTAAATTTAATAAAAAAA
91258216 AATATAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.57, C:0.00, G:0.15, T:0.28
Consensus pattern (21 bp):
GGTTAAATTTAATAAAAAAAG
Found at i:91265386 original size:54 final size:54
Alignment explanation
Indices: 91265304--91265412 Score: 191
Period size: 54 Copynumber: 2.0 Consensus size: 54
91265294 AAACCTTTAC
*
91265304 AGGGGGGTATAAAAGAAAGACAGTAAAATTGTATAATTAAAGTGTAATTATTAT
1 AGGGGGGTATAAAAGAAAGACAGTAAAATTGTATAATTAAAGTGTAATTACTAT
* *
91265358 AGGGGGGTATAAAGGAAAGACAGTAAAATTGTATAATTAAAGTGTGATTACTAT
1 AGGGGGGTATAAAAGAAAGACAGTAAAATTGTATAATTAAAGTGTAATTACTAT
91265412 A
1 A
91265413 TGAACATTCT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.45, C:0.03, G:0.24, T:0.28
Consensus pattern (54 bp):
AGGGGGGTATAAAAGAAAGACAGTAAAATTGTATAATTAAAGTGTAATTACTAT
Found at i:91266623 original size:21 final size:21
Alignment explanation
Indices: 91266599--91266641 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
91266589 ACACAATTTG
91266599 TAGGAATATTCTGTAAATATT
1 TAGGAATATTCTGTAAATATT
* *
91266620 TAGGAATATTTTGTAGATATT
1 TAGGAATATTCTGTAAATATT
91266641 T
1 T
91266642 TTTTTATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (21 bp):
TAGGAATATTCTGTAAATATT
Found at i:91271220 original size:22 final size:22
Alignment explanation
Indices: 91271192--91271236 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
91271182 AGGGGGAGTG
91271192 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
91271214 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
91271236 T
1 T
91271237 TTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:91273408 original size:19 final size:19
Alignment explanation
Indices: 91273381--91273417 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
91273371 TTGAGAGAAA
91273381 AGTTAAAAATTTTAACTTT
1 AGTTAAAAATTTTAACTTT
*
91273400 AGTTCAAAATTTTAACTT
1 AGTTAAAAATTTTAACTT
91273418 ATCAAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (19 bp):
AGTTAAAAATTTTAACTTT
Found at i:91280819 original size:12 final size:11
Alignment explanation
Indices: 91280801--91280832 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
91280791 AACATATCAC
91280801 TAAAAAAATTT
1 TAAAAAAATTT
91280812 TAAAAAAATTT
1 TAAAAAAATTT
91280823 TAAAAAAATT
1 TAAAAAAATT
91280833 CATTGTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAAAAAAATTT
Found at i:91281454 original size:19 final size:20
Alignment explanation
Indices: 91281430--91281468 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
91281420 TCTTATTTTT
91281430 TATTTGTTTCT-TGTTTTAA
1 TATTTGTTTCTATGTTTTAA
*
91281449 TATTTGTTTTTATGTTTTAA
1 TATTTGTTTCTATGTTTTAA
91281469 ATGTATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.18, C:0.03, G:0.10, T:0.69
Consensus pattern (20 bp):
TATTTGTTTCTATGTTTTAA
Found at i:91281491 original size:25 final size:23
Alignment explanation
Indices: 91281449--91281494 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
91281439 CTTGTTTTAA
*
91281449 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
91281472 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
91281495 ATTTTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:91284276 original size:14 final size:14
Alignment explanation
Indices: 91284235--91284290 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
91284225 ATATAGTGAC
91284235 TAAAAATAATTAAA
1 TAAAAATAATTAAA
* * *
91284249 TTAGAGT-ATATAAA
1 TAAAAATAAT-TAAA
91284263 TAAAAATAATTAAA
1 TAAAAATAATTAAA
91284277 TTAAAATATAATTA
1 -TAAAA-ATAATTA
91284291 CACAATATAA
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
13 2 0.06
14 16 0.50
15 7 0.22
16 7 0.22
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (14 bp):
TAAAAATAATTAAA
Found at i:91291490 original size:21 final size:21
Alignment explanation
Indices: 91291464--91291504 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
91291454 ATCTGCTCAA
* *
91291464 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
91291485 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
91291505 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:91296977 original size:15 final size:15
Alignment explanation
Indices: 91296920--91296977 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
91296910 CTTTATACTA
*
91296920 TAAAACATTTATTAT
1 TAAAATATTTATTAT
* *
91296935 TAATATATTTATAATTT
1 TAAAATATTTAT--TAT
91296952 TAACGAATATTTATTAT
1 TAA--AATATTTATTAT
91296969 TAAAATATT
1 TAAAATATT
91296978 AGTATTGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.47
17 10 0.29
19 8 0.24
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (15 bp):
TAAAATATTTATTAT
Done.