Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 28 of 325
Found at i:8577728 original size:31 final size:31
Alignment explanation
Indices: 8577690--8577869 Score: 274
Period size: 31 Copynumber: 5.8 Consensus size: 31
8577680 ACAAATGACA
*
8577690 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
8577721 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
8577752 AGTGAAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
8577783 AGTAAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
8577814 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
8577845 AAT-AAATAGTGGTAGCTTCGGCTAC
1 AGTGAAA-AGTGGTAGCTTCGGCTAC
8577870 AAGTGACAAG
Statistics
Matches: 137, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
30 5 0.04
31 130 0.95
32 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:8577968 original size:47 final size:46
Alignment explanation
Indices: 8577892--8578019 Score: 157
Period size: 47 Copynumber: 2.8 Consensus size: 46
8577882 ACAAGTGATT
* * * *
8577892 TCCGTAGAAGACCATATCTGGGATATGGCATCGGTGTGATATATGC
1 TCCGTATAAGACCATATCTGGGATATGGCATCGATGAGATATATGA
* * *
8577938 TACTGTATAAGACCATATCTGGGATATGGCATCAATGAGATATGTGA
1 T-CCGTATAAGACCATATCTGGGATATGGCATCGATGAGATATATGA
* * *
8577985 TCCGTGTAAGACCATAGCTGGGCTATGGCATCGAT
1 TCCGTATAAGACCATATCTGGGATATGGCATCGAT
8578020 ATATGAATAT
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
46 30 0.43
47 39 0.57
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (46 bp):
TCCGTATAAGACCATATCTGGGATATGGCATCGATGAGATATATGA
Found at i:8578096 original size:42 final size:42
Alignment explanation
Indices: 8577988--8578085 Score: 153
Period size: 42 Copynumber: 2.3 Consensus size: 42
8577978 TATGTGATCC
*
8577988 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
* *
8578030 GTGTAAGACCATAGCCGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAAGAT
8578072 GTGTAAGACCATAG
1 GTGTAAGACCATAG
8578086 TTGAACTATG
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
41 1 0.02
42 51 0.98
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
Found at i:8586099 original size:31 final size:31
Alignment explanation
Indices: 8586037--8586213 Score: 279
Period size: 31 Copynumber: 5.8 Consensus size: 31
8586027 GACAAATGAA
* *
8586037 AGTGATAAGTGGTAGCTTCAGCTA-CTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
8586067 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
8586098 AGTGAAAAGTGGTAG-TTC-GCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
8586127 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
8586158 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
8586189 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
8586214 AAGTGACAAG
Statistics
Matches: 137, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
29 26 0.19
30 28 0.20
31 83 0.61
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:8586134 original size:60 final size:62
Alignment explanation
Indices: 8586037--8586213 Score: 279
Period size: 60 Copynumber: 2.9 Consensus size: 62
8586027 GACAAATGAA
* *
8586037 AGTGATAAGTGGTAGCTTCAGCTA-CTGATCAGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATC
8586098 AGTGAAAAGTGGTAG-TTC-GCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
8586158 AGTGAAAAATGGTAGCTCCGGCTACCTGATCAGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTAC
8586214 AAGTGACAAG
Statistics
Matches: 108, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
59 4 0.04
60 53 0.49
61 16 0.15
62 35 0.32
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (62 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:8586191 original size:91 final size:92
Alignment explanation
Indices: 8586037--8586213 Score: 277
Period size: 91 Copynumber: 1.9 Consensus size: 92
8586027 GACAAATGAA
* * * *
8586037 AGTGATAAGTGGTAGCTTCAGCTACTGATCAGTGAAAAGTGGTAGCTTCTGCTACCTGATCAGTG
1 AGTGAAAAGTGGTAGCTTCAGCTACTGATCAGTGAAAAATGGTAGCTCCGGCTACCTGATCAGTG
8586102 AAAAGTGGTAG-TTC-GCTACCTGATC
66 AAAAGTGGTAGCTTCGGCTACCTGATC
*
8586127 AGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAATGGTAGCTCCGGCTACCTGATCAGT
1 AGTGAAAAGTGGTAGCTTCAGCTA-CTGATCAGTGAAAAATGGTAGCTCCGGCTACCTGATCAGT
*
8586192 GAATAGTGGTAGCTTCGGCTAC
65 GAAAAGTGGTAGCTTCGGCTAC
8586214 AAGTGACAAG
Statistics
Matches: 78, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
90 22 0.28
91 48 0.62
92 3 0.04
93 5 0.06
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (92 bp):
AGTGAAAAGTGGTAGCTTCAGCTACTGATCAGTGAAAAATGGTAGCTCCGGCTACCTGATCAGTG
AAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:8586308 original size:47 final size:46
Alignment explanation
Indices: 8586238--8586402 Score: 169
Period size: 47 Copynumber: 3.7 Consensus size: 46
8586228 AAGTGATTTC
* *
8586238 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
8586284 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
8586331 CGTGTAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATG-ATA
* * * *
8586373 TGTGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATATCTGGGATATGGCATC
8586403 ATTATGTGAA
Statistics
Matches: 106, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
41 7 0.07
42 31 0.29
46 27 0.25
47 41 0.39
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:8586390 original size:42 final size:43
Alignment explanation
Indices: 8586332--8586446 Score: 171
Period size: 42 Copynumber: 2.7 Consensus size: 43
8586322 TATGTGATTC
*
8586332 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
8586374 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
8586416 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
8586447 GAAAACGAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 64 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:8594411 original size:31 final size:31
Alignment explanation
Indices: 8594373--8594552 Score: 274
Period size: 31 Copynumber: 5.8 Consensus size: 31
8594363 ACAAATGACA
*
8594373 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
8594404 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
8594435 AGTGAAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
8594466 AGTAAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
8594497 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
8594528 AAT-AAATAGTGGTAGCTTCGGCTAC
1 AGTGAAA-AGTGGTAGCTTCGGCTAC
8594553 AAGTGACAAG
Statistics
Matches: 137, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
30 5 0.04
31 130 0.95
32 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:8594651 original size:47 final size:45
Alignment explanation
Indices: 8594577--8594701 Score: 151
Period size: 47 Copynumber: 2.7 Consensus size: 45
8594567 AAGTGATTTC
* * * *
8594577 CGTAGAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCT
1 CGTATAAGACCATATCTGGGATATGGCATCGATGAGATATATGAT
* *
8594622 ACTGTATAAGACCATATCTGGGATATGGCATCAATGAGATATGTGAT
1 -C-GTATAAGACCATATCTGGGATATGGCATCGATGAGATATATGAT
* * *
8594669 CGTGTAAGACCATAGCTGGGCTATGGCATCGAT
1 CGTATAAGACCATATCTGGGATATGGCATCGAT
8594702 ATATGAATAT
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
45 28 0.41
46 2 0.03
47 38 0.56
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (45 bp):
CGTATAAGACCATATCTGGGATATGGCATCGATGAGATATATGAT
Found at i:8594778 original size:42 final size:42
Alignment explanation
Indices: 8594628--8594767 Score: 158
Period size: 42 Copynumber: 3.3 Consensus size: 42
8594618 TGCTACTGTA
* * * *
8594628 TAAGACCATATCTGGGATATGGCATCAATGAGATATG-TGATCGTG
1 TAAGACCATAGCTGGGCTATGGCATC---GATATATGAAGAT-GTG
*
8594673 TAAGACCATAGCTGGGCTATGGCATCGATATATGAATATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATATGAAGATGTG
* *
8594715 TAAGACCATAGCCGGGCTATGGCATC-ATTATGTGAAGATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATATGAAGATGTG
8594757 TAAGACCATAG
1 TAAGACCATAG
8594768 TTGAACTATG
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
41 1 0.01
42 58 0.68
43 2 0.02
45 24 0.28
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.27
Consensus pattern (42 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATATGAAGATGTG
Found at i:8602757 original size:31 final size:31
Alignment explanation
Indices: 8602719--8602898 Score: 274
Period size: 31 Copynumber: 5.8 Consensus size: 31
8602709 ACAAATGACA
*
8602719 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
8602750 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
8602781 AGTGAAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
8602812 AGTAAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
8602843 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
8602874 AAT-AAATAGTGGTAGCTTCGGCTAC
1 AGTGAAA-AGTGGTAGCTTCGGCTAC
8602899 AAGTGACAAG
Statistics
Matches: 137, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
30 5 0.04
31 130 0.95
32 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:8603002 original size:47 final size:46
Alignment explanation
Indices: 8602916--8603038 Score: 131
Period size: 47 Copynumber: 2.7 Consensus size: 46
8602906 AAGTGATTTC
* * ** * *
8602916 CGTAGAAGACTATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCAATGAGATATATGATA
* *
8602962 CTGTATAAGACCATATCTGGGATATGGCATCAATGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCAATGAGATATATGATA
* *
8603009 CGTGTAAGACCATAGCT-GGACTATGGCATC
1 CGTATAAGACCATATCTGGGA-TATGGCATC
8603039 GATATATGAA
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
45 3 0.05
46 24 0.37
47 38 0.58
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCAATGAGATATATGATA
Found at i:8603034 original size:46 final size:43
Alignment explanation
Indices: 8602967--8603118 Score: 132
Period size: 42 Copynumber: 3.5 Consensus size: 43
8602957 TGCTACTGTA
* *
8602967 TAAGACCATATCTGGGA-TATGGCATCAATGAGATATGTGAT-TCGTG
1 TAAGACCATAGCT-GGACTATGGCATC-A-GAGATATG-AATAT-GTG
*
8603013 TAAGACCATAGCTGGACTATGGCATC-GATATATGAATATGTG
1 TAAGACCATAGCTGGACTATGGCATCAGAGATATGAATATGTG
* * ** * *
8603055 TAAGACCATAGCCGGGCTATGGCATCA-TTATGTGAAGATGTG
1 TAAGACCATAGCTGGACTATGGCATCAGAGATATGAATATGTG
* *
8603097 TAAGACCATAGTTGAACTATGG
1 TAAGACCATAGCTGGACTATGG
8603119 AATCGAACCA
Statistics
Matches: 91, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
42 59 0.65
43 8 0.09
45 3 0.03
46 21 0.23
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (43 bp):
TAAGACCATAGCTGGACTATGGCATCAGAGATATGAATATGTG
Found at i:8603117 original size:42 final size:42
Alignment explanation
Indices: 8603010--8603124 Score: 151
Period size: 42 Copynumber: 2.7 Consensus size: 42
8603000 TATGTGATTC
*
8603010 GTGTAAGACCATAGCTGGACTATGGCATCGATATATGAATAT
1 GTGTAAGACCATAGCTGGACTATGGCATCGATATATGAAGAT
* * *
8603052 GTGTAAGACCATAGCCGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGACTATGGCATCGA-TATATGAAGAT
* * *
8603094 GTGTAAGACCATAGTTGAACTATGGAATCGA
1 GTGTAAGACCATAGCTGGACTATGGCATCGA
8603125 ACCAACGAAG
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 1 0.02
42 60 0.97
43 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGACTATGGCATCGATATATGAAGAT
Found at i:8615814 original size:31 final size:28
Alignment explanation
Indices: 8615758--8615823 Score: 80
Period size: 31 Copynumber: 2.3 Consensus size: 28
8615748 TAGAGTTTCA
*
8615758 CATGTAT-CATTGCACTAAATTAAAGTT
1 CATGTATACATTGCACTAAATCAAAGTT
8615785 CATGTATACAATTGCACATTAAATCAAAGTT
1 CATGTATAC-ATTGCAC--TAAATCAAAGTT
*
8615816 CACGTATA
1 CATGTATA
8615824 ATTTTGAGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 7 0.21
28 1 0.03
29 7 0.21
31 18 0.55
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (28 bp):
CATGTATACATTGCACTAAATCAAAGTT
Found at i:8617680 original size:36 final size:36
Alignment explanation
Indices: 8617633--8617705 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
8617623 CAAGTTGGAA
8617633 TTTTATTTGAATTTAAGTCTAAAATATCCATACCAG
1 TTTTATTTGAATTTAAGTCTAAAATATCCATACCAG
8617669 TTTTATTTGAATTTAAGTCTAAAATATCCATACCAG
1 TTTTATTTGAATTTAAGTCTAAAATATCCATACCAG
8617705 T
1 T
8617706 ATGCAGCACC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.36, C:0.14, G:0.08, T:0.42
Consensus pattern (36 bp):
TTTTATTTGAATTTAAGTCTAAAATATCCATACCAG
Found at i:8620467 original size:21 final size:21
Alignment explanation
Indices: 8620441--8620481 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8620431 ATCTGCTCAA
* *
8620441 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
8620462 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
8620482 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:8624278 original size:7 final size:7
Alignment explanation
Indices: 8624266--8624290 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8624256 CCTCCATCAA
8624266 ATCTACC
1 ATCTACC
8624273 ATCTACC
1 ATCTACC
8624280 ATCTACC
1 ATCTACC
8624287 ATCT
1 ATCT
8624291 GAGTAGTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.40, G:0.00, T:0.32
Consensus pattern (7 bp):
ATCTACC
Found at i:8629565 original size:29 final size:29
Alignment explanation
Indices: 8629483--8629596 Score: 108
Period size: 30 Copynumber: 3.9 Consensus size: 29
8629473 GAACTTGACA
* *
8629483 TTTTTTTCTAATTTCGTACCTAAACTT--
1 TTTTTTCCTAATTTGGTACCTAAACTTAG
* * *
8629510 TTTTTGGCCCAAATTGGTACCTAAACTTCAG
1 TTTTT-TCCTAATTTGGTACCTAAACTT-AG
* *
8629541 -TTTTTCTTAATTTGGTACCTAAACTTGG
1 TTTTTTCCTAATTTGGTACCTAAACTTAG
*
8629569 TTTTTTTCCTAATTTGGTACTTAAACTT
1 -TTTTTTCCTAATTTGGTACCTAAACTT
8629597 TTTTTAGGTT
Statistics
Matches: 69, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
27 5 0.07
28 18 0.26
29 18 0.26
30 28 0.41
ACGTcount: A:0.23, C:0.18, G:0.11, T:0.49
Consensus pattern (29 bp):
TTTTTTCCTAATTTGGTACCTAAACTTAG
Found at i:8629582 original size:30 final size:29
Alignment explanation
Indices: 8629483--8629622 Score: 119
Period size: 29 Copynumber: 4.9 Consensus size: 29
8629473 GAACTTGACA
*
8629483 TTTTTTT-CTAATTTCGTACCTAAACTT-
1 TTTTTTTCCTAATTTGGTACCTAAACTTG
** * * *
8629510 TTTTTGGCCCAAATTGGTACCTAAACTTC
1 TTTTTTTCCTAATTTGGTACCTAAACTTG
** *
8629539 AGTTTTTCTTAATTTGGTACCTAAACTTGG
1 TTTTTTTCCTAATTTGGTACCTAAACTT-G
*
8629569 TTTTTTTCCTAATTTGGTACTTAAACTT-
1 TTTTTTTCCTAATTTGGTACCTAAACTTG
8629597 TTTTTAGGTT-C-AATTTGGTACCTAAA
1 TTTTT---TTCCTAATTTGGTACCTAAA
8629623 TTTATTAAAT
Statistics
Matches: 89, Mismatches: 18, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
27 5 0.06
28 22 0.25
29 35 0.39
30 25 0.28
31 2 0.02
ACGTcount: A:0.24, C:0.16, G:0.11, T:0.49
Consensus pattern (29 bp):
TTTTTTTCCTAATTTGGTACCTAAACTTG
Found at i:8629884 original size:58 final size:59
Alignment explanation
Indices: 8629740--8629884 Score: 174
Period size: 58 Copynumber: 2.5 Consensus size: 59
8629730 AATGTTTGAT
*
8629740 AAGTTGAAGTACCAAA-TAGAACAAAAAAATGATTAAGTGTCAAATTAGAAAAAAGAGTC
1 AAGTTG-AGTACCAAATTAGGACAAAAAAATGATTAAGTGTCAAATTAGAAAAAAGAGTC
* * *
8629799 AAGTTGAGTACCAAATT-GGATCCAAAAAA-GATTAAGTGTCAACTTAGGAAAAAGTA-TC
1 AAGTTGAGTACCAAATTAGGA-CAAAAAAATGATTAAGTGTCAAATTAGAAAAAAG-AGTC
*
8629857 AAGTTTAGGTACCAAATTAGGA-AAAAAA
1 AAGTTGA-GTACCAAATTAGGACAAAAAA
8629885 TGTCAAATTC
Statistics
Matches: 75, Mismatches: 6, Indels: 11
0.82 0.07 0.12
Matches are distributed among these distances:
58 47 0.63
59 25 0.33
60 3 0.04
ACGTcount: A:0.50, C:0.10, G:0.18, T:0.22
Consensus pattern (59 bp):
AAGTTGAGTACCAAATTAGGACAAAAAAATGATTAAGTGTCAAATTAGAAAAAAGAGTC
Found at i:8632564 original size:30 final size:29
Alignment explanation
Indices: 8632528--8632619 Score: 116
Period size: 30 Copynumber: 3.2 Consensus size: 29
8632518 CGGGAACGAT
*
8632528 CACCACCACGACGAACTCTTGCATGACCAC
1 CACCACCAC-ACGAACACTTGCATGACCAC
*
8632558 CACCA-C-CATGAACACTTGCATGACCAC
1 CACCACCACACGAACACTTGCATGACCAC
* *
8632585 CACCACCACCACGAACACCTGCATGACCAA
1 CACCACCA-CACGAACACTTGCATGACCAC
8632615 CACCA
1 CACCA
8632620 TGAACATCAT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
27 23 0.43
28 2 0.04
29 1 0.02
30 28 0.52
ACGTcount: A:0.34, C:0.45, G:0.11, T:0.11
Consensus pattern (29 bp):
CACCACCACACGAACACTTGCATGACCAC
Found at i:8632570 original size:27 final size:27
Alignment explanation
Indices: 8632528--8632619 Score: 112
Period size: 27 Copynumber: 3.3 Consensus size: 27
8632518 CGGGAACGAT
* *
8632528 CACCACCACGACGAACTCTTGCATGAC
1 CACCACCACCACGAACACTTGCATGAC
*
8632555 CACCACCACCATGAACACTTGCATGACCAC
1 CACCACCACCACGAACACTTGCATG---AC
*
8632585 CACCACCACCACGAACACCTGCATGAC
1 CACCACCACCACGAACACTTGCATGAC
*
8632612 CAACACCA
1 CACCACCA
8632620 TGAACATCAT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
27 31 0.55
30 25 0.45
ACGTcount: A:0.34, C:0.45, G:0.11, T:0.11
Consensus pattern (27 bp):
CACCACCACCACGAACACTTGCATGAC
Found at i:8636290 original size:42 final size:42
Alignment explanation
Indices: 8636237--8636324 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
8636227 AACAAAAAAG
8636237 AAAAATCATCTAGCTCTTCCAATTTTTGGTAGCATGACAAAT
1 AAAAATCATCTAGCTCTTCCAATTTTTGGTAGCATGACAAAT
8636279 AAAAATCATCTAGCTCTTCCAATTTTTGGTAGCATGACAAAT
1 AAAAATCATCTAGCTCTTCCAATTTTTGGTAGCATGACAAAT
8636321 AAAA
1 AAAA
8636325 TAGTAAAATG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (42 bp):
AAAAATCATCTAGCTCTTCCAATTTTTGGTAGCATGACAAAT
Found at i:8637272 original size:3 final size:3
Alignment explanation
Indices: 8637259--8637291 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
8637249 CAAAAAACTG
*
8637259 AGA AAA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
8637292 GGAGCAGGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:8638408 original size:31 final size:30
Alignment explanation
Indices: 8638355--8638423 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
8638345 ATACATGAAT
*
8638355 TTTAATTTGGTGTAATTATATACGTAAAAC
1 TTTAATTTGGTGTAAATATATACGTAAAAC
* * *
8638385 TTTAATTGTGGT-TCAAATATATACTTGAAAT
1 TTTAATT-TGGTGT-AAATATATACGTAAAAC
8638416 TTTAATTT
1 TTTAATTT
8638424 TGATTTAATC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 9 0.27
31 24 0.73
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.48
Consensus pattern (30 bp):
TTTAATTTGGTGTAAATATATACGTAAAAC
Found at i:8638619 original size:29 final size:30
Alignment explanation
Indices: 8638566--8638622 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
8638556 AAGTTGGATC
8638566 AAATCAAAATTTCATGTATAAAATTGCATA
1 AAATCAAAATTTCATGTATAAAATTGCATA
*
8638596 AAATCAAAA-TTCATGTATATAATTGCA
1 AAATCAAAATTTCATGTATAAAATTGCA
8638623 CATTAAACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.33
Consensus pattern (30 bp):
AAATCAAAATTTCATGTATAAAATTGCATA
Found at i:8638643 original size:31 final size:29
Alignment explanation
Indices: 8638570--8638646 Score: 82
Period size: 31 Copynumber: 2.6 Consensus size: 29
8638560 TGGATCAAAT
*
8638570 CAAAATTTCATGTATAAAATTGCATAAAAT
1 CAAAATTT-ATGTATAAAATTGCATAAAAC
* * *
8638600 CAAAATTCATGTATATAATTGCACATTAAAC
1 CAAAATTTATGTATAAAATTG--CATAAAAC
*
8638631 CATAATTTATGTATAA
1 CAAAATTTATGTATAA
8638647 TTTTGGTATT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 12 0.32
30 7 0.18
31 19 0.50
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.35
Consensus pattern (29 bp):
CAAAATTTATGTATAAAATTGCATAAAAC
Found at i:8638724 original size:6 final size:6
Alignment explanation
Indices: 8638713--8638740 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
8638703 TAATTTTAAA
8638713 AAATTT AAATTT AAATTT AAATTT AAAT
1 AAATTT AAATTT AAATTT AAATTT AAAT
8638741 ATATGTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
AAATTT
Found at i:8639027 original size:47 final size:48
Alignment explanation
Indices: 8638948--8639046 Score: 139
Period size: 47 Copynumber: 2.1 Consensus size: 48
8638938 ATATTTTTAT
* **
8638948 AATTTTTATAATTTATTTTAATTTAAAGTTAAATTACAAATGAAAATA
1 AATTTTTATAATTTATTTTAATTTAAAATTAAACGACAAATGAAAATA
*
8638996 AATTATTTATAA-TTATTTT-ATTTAAAATTAAACGGCAAATGAAAATA
1 AATT-TTTATAATTTATTTTAATTTAAAATTAAACGACAAATGAAAATA
8639043 AATT
1 AATT
8639047 GACATCATTT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
47 28 0.61
48 11 0.24
49 7 0.15
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.43
Consensus pattern (48 bp):
AATTTTTATAATTTATTTTAATTTAAAATTAAACGACAAATGAAAATA
Found at i:8643147 original size:46 final size:47
Alignment explanation
Indices: 8643094--8643352 Score: 346
Period size: 46 Copynumber: 5.6 Consensus size: 47
8643084 TGCCATAGCG
* * *
8643094 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTCATGTCACGTTGCCATGGTA
* ** * **
8643140 TCATTCAACCATGGTCTTATTCATTTCCCCGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTCATGTCACGTTGCCATGGTA
*
8643187 TCTTTCAACCATGGTCTTAAACA-TTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTCATGTCACGTTGCCATGGTA
* * *
8643233 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCAATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTCATGTCACGTTGCCATGGTA
* * *
8643279 TCTTTCAACCATGGTCTTACAC-GTTTCATATCAAGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTTCATGTCACGTTGCCATGGTA
8643325 TCTTTCAACCATGGTCTTACACATTTTC
1 TCTTTCAACCATGGTCTTACACATTTTC
8643353 TATCAGAGAG
Statistics
Matches: 191, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
46 151 0.79
47 40 0.21
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (47 bp):
TCTTTCAACCATGGTCTTACACATTTTCATGTCACGTTGCCATGGTA
Found at i:8646319 original size:3 final size:3
Alignment explanation
Indices: 8646299--8646346 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
8646289 TTAGTTTCAG
* * *
8646299 GAA GAAA GAA GGA GAA GAA GAA AAA GAA -AA GAA GGA GAA GAA GAA
1 GAA G-AA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
8646344 GAA
1 GAA
8646347 AGAAAAAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
2 2 0.05
3 32 0.86
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:8646331 original size:23 final size:24
Alignment explanation
Indices: 8646303--8646352 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
8646293 TTTCAGGAAG
8646303 AAAGAAGGAGAAGAAGAA-AAAGA
1 AAAGAAGGAGAAGAAGAAGAAAGA
8646326 AAAGAAGGAGAAGAAGAAGAAAGA
1 AAAGAAGGAGAAGAAGAAGAAAGA
8646350 AAA
1 AAA
8646353 AAAAGGGGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 18 0.69
24 8 0.31
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (24 bp):
AAAGAAGGAGAAGAAGAAGAAAGA
Found at i:8646337 original size:17 final size:17
Alignment explanation
Indices: 8646311--8646357 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
8646301 AGAAAGAAGG
8646311 AGAAGAAGAAAAAGAAA
1 AGAAGAAGAAAAAGAAA
* * *
8646328 AGAAGGAGAAGAAGAAG
1 AGAAGAAGAAAAAGAAA
*
8646345 A-AAGAAAAAAAAG
1 AGAAGAAGAAAAAG
8646358 GGGAGGAGGA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (17 bp):
AGAAGAAGAAAAAGAAA
Found at i:8646835 original size:17 final size:17
Alignment explanation
Indices: 8646805--8646876 Score: 60
Period size: 17 Copynumber: 4.4 Consensus size: 17
8646795 CCTTTTACAA
* *
8646805 AAAATAGTATAAAAAAT
1 AAAATACTAGAAAAAAT
8646822 AAAATACT--AAAAAAT
1 AAAATACTAGAAAAAAT
* * *
8646837 ATATTAAT-GAAAAAAT
1 AAAATACTAGAAAAAAT
* *
8646853 AAAATACGAGAAGAAAT
1 AAAATACTAGAAAAAAT
8646870 AAAATAC
1 AAAATAC
8646877 GAAAAAAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
15 12 0.27
16 11 0.25
17 21 0.48
ACGTcount: A:0.68, C:0.04, G:0.07, T:0.21
Consensus pattern (17 bp):
AAAATACTAGAAAAAAT
Found at i:8647086 original size:11 final size:12
Alignment explanation
Indices: 8647070--8647104 Score: 54
Period size: 11 Copynumber: 2.9 Consensus size: 12
8647060 ATTTTTTGCT
8647070 AAAATAATATA-
1 AAAATAATATAG
8647081 AAAATAATATATG
1 AAAATAATATA-G
8647094 AAAATAATATA
1 AAAATAATATA
8647105 TTTTAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.50
13 11 0.50
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (12 bp):
AAAATAATATAG
Found at i:8647097 original size:13 final size:12
Alignment explanation
Indices: 8647069--8647105 Score: 58
Period size: 13 Copynumber: 3.1 Consensus size: 12
8647059 CATTTTTTGC
8647069 TAAAATAATATA
1 TAAAATAATATA
8647081 -AAAATAATATA
1 TAAAATAATATA
8647092 TGAAAATAATATA
1 T-AAAATAATATA
8647105 T
1 T
8647106 TTTAAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 11 0.48
13 12 0.52
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (12 bp):
TAAAATAATATA
Found at i:8647109 original size:148 final size:150
Alignment explanation
Indices: 8646911--8647428 Score: 744
Period size: 148 Copynumber: 3.5 Consensus size: 150
8646901 TGCTGACGAG
* * * *
8646911 TTTTTTTCTAAAATAATATAAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCG
1 TTTTTTGCTAAAATAATAT-AAAAAATAAAATATGAAAATAATATATTTTAAAAAATAATATACG
* **
8646976 AAAATAAAAAAATACGAACAAGGTGTCAAAGCCAGGGTTATTTATTAAATTAATAT-AAAAAA-A
65 AAAATAAAAAAATACGAACAAAGTG-CAAAATCAGGGTTATTTATTAAATTAATATAAAAAAACA
*
8647039 CTTAAATAATACATTTAAAACA
129 CTTAAATAATACATTTGAAACA
* *
8647061 TTTTTTGCTAAAATAATAT-AAAAATAATATATGAAAATAATATATTTTAAAAAATAATATACAA
1 TTTTTTGCTAAAATAATATAAAAAATAAAATATGAAAATAATATATTTTAAAAAATAATATACGA
* **
8647125 AAAT-AAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAAACAC
66 AAATAAAAAAATACGAACAAAGTGC-AAAATCAGGGTTATTTATTAAATTAATATAAAAAAACAC
8647189 TTAAATAATACATTTGAAACA
130 TTAAATAATACATTTGAAACA
* * * * *
8647210 TTATGTACTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACG
1 TTTTTTGCTAAAATAATATAAA-AAATAAAATATGAAAATAATATATTTTAAAAAATAATATACG
* * *
8647275 AAAATAAAAAAATAGGAAGAAAGTGGCAAAATCAGGGTTATTTATTAAATTAATATAAAAAAATA
65 AAAATAAAAAAATACGAACAAAGT-GCAAAATCAGGGTTATTTATTAAATTAATATAAAAAAACA
*
8647340 CTTACATAATACATTTGAAACA
129 CTTAAATAATACATTTGAAACA
8647362 TTTTTTGCTAAAATAATAT--AAAA-AAAATATGAAAATAATATATTTTAAAAAATAATATACGA
1 TTTTTTGCTAAAATAATATAAAAAATAAAATATGAAAATAATATATTTTAAAAAATAATATACGA
8647424 AAATA
66 AAATA
8647429 TTTTACTTAT
Statistics
Matches: 330, Mismatches: 31, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
146 1 0.00
147 42 0.13
148 92 0.28
149 41 0.12
150 21 0.06
151 43 0.13
152 88 0.27
153 2 0.01
ACGTcount: A:0.57, C:0.06, G:0.07, T:0.30
Consensus pattern (150 bp):
TTTTTTGCTAAAATAATATAAAAAATAAAATATGAAAATAATATATTTTAAAAAATAATATACGA
AAATAAAAAAATACGAACAAAGTGCAAAATCAGGGTTATTTATTAAATTAATATAAAAAAACACT
TAAATAATACATTTGAAACA
Found at i:8650003 original size:27 final size:27
Alignment explanation
Indices: 8649973--8650034 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
8649963 AATAACTAAC
*
8649973 AATAATTAGGGTTTTTTTACTAACAAT
1 AATAATAAGGGTTTTTTTACTAACAAT
8650000 AATAATAAGGGTTTTTTTACTAACAAT
1 AATAATAAGGGTTTTTTTACTAACAAT
*
8650027 ATTAATAA
1 AATAATAA
8650035 CTAACAACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.42
Consensus pattern (27 bp):
AATAATAAGGGTTTTTTTACTAACAAT
Found at i:8650341 original size:21 final size:20
Alignment explanation
Indices: 8650315--8650363 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
8650305 TATTTTTTTA
*
8650315 TTTTTTTCGTTTTCAGCTTT
1 TTTTTTTCATTTTCAGCTTT
*
8650335 TTTTTTTCATTTTCAGCCTT
1 TTTTTTTCATTTTCAGCTTT
8650355 TTTTTTTCA
1 TTTTTTTCA
8650364 CTGTTGAGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.08, C:0.16, G:0.06, T:0.69
Consensus pattern (20 bp):
TTTTTTTCATTTTCAGCTTT
Found at i:8651997 original size:3 final size:3
Alignment explanation
Indices: 8651991--8652015 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8651981 TTTATTATTA
8651991 TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG T
8652016 CGATTGATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:8652346 original size:16 final size:15
Alignment explanation
Indices: 8652325--8652404 Score: 52
Period size: 17 Copynumber: 5.0 Consensus size: 15
8652315 TTTTTTTACA
*
8652325 AAAATAGTATAAAAAT
1 AAAATACTA-AAAAAT
8652341 AAAATACTAAAAAAT
1 AAAATACTAAAAAAT
** * *
8652356 ATATCTTAATGAAAAAT
1 A-A-AATACTAAAAAAT
*
8652373 AAAATACAAAAACAAAT
1 AAAATAC-TAAA-AAAT
*
8652390 AAAATACGAAAAAAT
1 AAAATACTAAAAAAT
8652405 TAATTTTTTT
Statistics
Matches: 49, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
15 13 0.27
16 15 0.31
17 21 0.43
ACGTcount: A:0.69, C:0.06, G:0.04, T:0.21
Consensus pattern (15 bp):
AAAATACTAAAAAAT
Found at i:8652389 original size:17 final size:18
Alignment explanation
Indices: 8652369--8652402 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
8652359 TCTTAATGAA
8652369 AAATAAAATAC-AAAAAC
1 AAATAAAATACGAAAAAC
8652386 AAATAAAATACGAAAAA
1 AAATAAAATACGAAAAA
8652403 ATTAATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.76, C:0.09, G:0.03, T:0.12
Consensus pattern (18 bp):
AAATAAAATACGAAAAAC
Found at i:8668273 original size:46 final size:46
Alignment explanation
Indices: 8668048--8668275 Score: 332
Period size: 46 Copynumber: 5.0 Consensus size: 46
8668038 TTATCTTTGG
* * * *
8668048 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
* *
8668094 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* **
8668140 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
8668186 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
*
8668232 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
8668276 TTCAGAGAGC
Statistics
Matches: 167, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 163 0.98
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:8672360 original size:10 final size:10
Alignment explanation
Indices: 8672347--8672380 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
8672337 ATTTTTTTAA
*
8672347 ATGTATTTAT
1 ATGTATATAT
8672357 ATGTATATAT
1 ATGTATATAT
8672367 ATGTATATAT
1 ATGTATATAT
8672377 ATGT
1 ATGT
8672381 CTTCTTTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (10 bp):
ATGTATATAT
Found at i:8677641 original size:11 final size:11
Alignment explanation
Indices: 8677625--8677655 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
8677615 TTAGTTTCAA
*
8677625 AAAAAGAAAAT
1 AAAAAGAAAAG
8677636 AAAAAGAAAAG
1 AAAAAGAAAAG
8677647 AAAAAGAAA
1 AAAAAGAAA
8677656 CAGGAGAGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:8679074 original size:44 final size:45
Alignment explanation
Indices: 8679026--8679125 Score: 116
Period size: 44 Copynumber: 2.2 Consensus size: 45
8679016 TTAGCCACTG
**
8679026 GTCTTATC-TCTCTAAAGTAGC-AAGAGAGCAGGTTGAAAA-TACAA
1 GTCTTATCTTCT-TAAAGTAGCAAAGA-AGCAGACTGAAAATTACAA
* *
8679070 GTCTTATCTTCTTGAGGTAGCAAAGAAGCAGACTGAAAATTACAA
1 GTCTTATCTTCTTAAAGTAGCAAAGAAGCAGACTGAAAATTACAA
*
8679115 ATCTTATCTTC
1 GTCTTATCTTC
8679126 ATGTATCGGC
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
44 26 0.54
45 22 0.46
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (45 bp):
GTCTTATCTTCTTAAAGTAGCAAAGAAGCAGACTGAAAATTACAA
Found at i:8679154 original size:45 final size:45
Alignment explanation
Indices: 8679105--8679192 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 45
8679095 AAGCAGACTG
* *
8679105 AAAATTACAAATCTTATCT-TCATGTATCGGCTATGGAGCAGATCA
1 AAAATGACAAATCTTATCTCT-ATGTATCAGCTATGGAGCAGATCA
* * * *
8679150 AAAATGGCGAGTCTTATCTCTATGTATCAGCTATGGAGTAGAT
1 AAAATGACAAATCTTATCTCTATGTATCAGCTATGGAGCAGAT
8679193 TTTAGCCATC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
45 35 0.97
46 1 0.03
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (45 bp):
AAAATGACAAATCTTATCTCTATGTATCAGCTATGGAGCAGATCA
Found at i:8679226 original size:178 final size:178
Alignment explanation
Indices: 8678924--8680339 Score: 2337
Period size: 178 Copynumber: 8.0 Consensus size: 178
8678914 GGGTAACAGG
* * * *
8678924 CTGAAAATTACAGATCTTATCTCTATGTATCGGCTATGGAGTAGATCGAAAATGGTGAGTCTTAT
1 CTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
** * * *
8678989 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTGGTCTTATCTCTCTAAAGTAGCAAGAGAG
66 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
* * *
8679054 CAGGTTGAAAATACAAGTCTTATCTTCTTGAGGTAGCAAAGAAGCAGA
131 CAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
* *
8679102 CTGAAAATTACAAATCTTATCTTCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
1 CTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
* * * * * *
8679167 CTCTATGTATCAGCTATGGAGTAGATTTTAGCCATCAGTCTTATCTCTCTAAGGTAGCAAGAGAG
66 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
* *
8679232 TAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTATCAAGGAAGCAGA
131 CAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
* * *
8679280 CTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGAAGCAGATCAGAAATGGTGAGTCTTAT
1 CTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
* *
8679345 CTCCATGTATCAGCTATGGAGTAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
66 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
*
8679410 CAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAA
131 CAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
* * *
8679458 CTGAAAATTACAGATCTTATCTACATGTATCGGCTATAGAGCAGATCAGAAATGGCGAGTCTTAT
1 CTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
*
8679523 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCTCTGAGGTAGCAAGAGAG
66 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
*
8679588 CAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGA
131 CAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
* * * * * *
8679636 CTGGAAATTACAGATCTTATCTCCATGTATCAGCTATGGAACAAATTAAAAATGGTGAGTCTTAT
1 CTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
*
8679701 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTGGCAAGAGAG
66 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
8679766 CAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
131 CAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
* * * *
8679814 CTGAAAATTACAGATCTTATCTCCATGTATCAGCTATGGAGTAGATCGAAAATGGCGAGTTTTAT
1 CTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
8679879 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
66 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
* *
8679944 TAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGA
131 CAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
* * * * *
8679992 CTGAAAATTACAGATCTTATCTCCATGTATCAGTTATGGAGCAGATCAGAAATAGTGAGTCTTAT
1 CTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
8680057 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
66 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
* *
8680122 CAGGTTAAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGA
131 CAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
* *
8680170 CTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAACAGATCGAAAATGGCGAGTCTTAT
1 CTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
8680235 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
66 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
8680300 CAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAG
131 CAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAG
8680340 AGAGCAGGTT
Statistics
Matches: 1156, Mismatches: 82, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
178 1156 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (178 bp):
CTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTAT
CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAG
CAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA
Found at i:8680301 original size:44 final size:44
Alignment explanation
Indices: 8680253--8680382 Score: 154
Period size: 44 Copynumber: 3.0 Consensus size: 44
8680243 ATCGGCTATG
** * *
8680253 GAGCAGATTTTAGCCACCAGCCTTATC-TCTCTGAGGTAGCAAGA
1 GAGCAGATTGAAGACACAAGCCTTATCTTC-CTGAGGTAGCAAGA
* * *
8680297 GAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGA
1 GAGCAGATTGAAGACACAAGCCTTATCTTCCTGAGGTAGCAAGA
* * *
8680341 GAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
1 GAGCAGATTGAAGACACAAGCCTTATCTTCCTGAGGTAGCAA
8680383 TGAAACAGAC
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
44 76 0.97
45 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (44 bp):
GAGCAGATTGAAGACACAAGCCTTATCTTCCTGAGGTAGCAAGA
Found at i:8680335 original size:222 final size:222
Alignment explanation
Indices: 8680096--8680560 Score: 815
Period size: 222 Copynumber: 2.1 Consensus size: 222
8680086 AGCCACCAGC
8680096 CTTATC-TCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATACAAGTATTATCTTCCTGAGGTAGCA
1 CTTATCTTC-CTGAGGTAGCAAGAGAGCAGGTTAAAGATACAAGTATTATCTTCCTGAGGTAGCA
* * * * **
8680160 AGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAACAGATCGAAAATGG
65 AGGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAACAGATAAAAAATGG
8680225 CGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGT
130 CGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGT
8680290 AGCAAGAGAGCAGGTTGAAGATACAAGT
195 AGCAAGAGAGCAGGTTGAAGATACAAGT
* *
8680318 CTTATCTTCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
1 CTTATCTTCCTGAGGTAGCAAGAGAGCAGGTTAAAGATACAAGTATTATCTTCCTGAGGTAGCAA
* *
8680383 TGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAGCAGATAAAAAATGGC
66 GGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAACAGATAAAAAATGGC
*
8680448 GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTG
131 GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
8680513 GCAAGAGAGCAGGTTGAAGATACAAGT
196 GCAAGAGAGCAGGTTGAAGATACAAGT
8680540 CTTATCTTCCTGAGGTAGCAA
1 CTTATCTTCCTGAGGTAGCAA
8680561 TGAAACAGAC
Statistics
Matches: 231, Mismatches: 11, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
222 229 0.99
223 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (222 bp):
CTTATCTTCCTGAGGTAGCAAGAGAGCAGGTTAAAGATACAAGTATTATCTTCCTGAGGTAGCAA
GGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAACAGATAAAAAATGGC
GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
GCAAGAGAGCAGGTTGAAGATACAAGT
Found at i:8680349 original size:578 final size:578
Alignment explanation
Indices: 8679740--8680917 Score: 2013
Period size: 578 Copynumber: 2.0 Consensus size: 578
8679730 AGCCACCAGC
*
8679740 CTTATC-TCTCTGAGGTGGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCA
1 CTTATCTTC-CTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCA
* * * * **
8679804 AGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCTATGGAGTAGATCGAAAATGG
65 AGGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAGCAGATAAAAAATGG
*
8679869 CGAGTTTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGT
130 CGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGT
* * *
8679934 AGCAAGAGAGTAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAAAA
195 AGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAAA
* *
8679999 TTACAGATCTTATCTCCATGTATCAGT-TATGGAGCAGATCAGAAATAGTGAGTCTTATCTCCAT
260 TTACAGATCATATCTCCATGTATC-GTCTATGGAGCAGATCAGAAATAGCGAGTCTTATCTCCAT
* * * * *
8680063 GTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTT
324 GTATCGGCTATGGAGAAAATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCAAGAGAGCAGATT
* *
8680128 AAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAA-ATTACAGATCTTATCT
389 AAAGATACAAGTATTATCATCCTGAGGTAGCAAGGAAGCAGACT-AAAGATTACAGATCATATCT
*
8680192 CCATGTATCGGCTATGGAA-CAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAG
453 CCATGTATCGGCTAT-GAAGCAGATCGAAAATAGCGAGTCTTATCTCCATGTATCGGCTATGGAG
8680256 CAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGT
517 CAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGT
8680318 CTTATCTTCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
1 CTTATCTTCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
*
8680383 TGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAGCAGATAAAAAATGGC
66 GGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAGCAGATAAAAAATGGC
*
8680448 GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTG
131 GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
*
8680513 GCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAATGAAACAGACTGAAAAT
196 GCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAAAT
* *
8680578 TATAGATCATATCTCCATGTATCGTCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGT
261 TACAGATCATATCTCCATGTATCGTCTATGGAGCAGATCAGAAATAGCGAGTCTTATCTCCATGT
* *
8680643 ATCGGCTATGGAGAAAATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCAAGAGAGCATATTGA
326 ATCGGCTATGGAGAAAATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTAA
*
8680708 AGATACAAGTCTTATCATCCTGAGGTAGCAAGGAAGCAGACTAAAGATTACAGATCATATCTCCA
391 AGATACAAGTATTATCATCCTGAGGTAGCAAGGAAGCAGACTAAAGATTACAGATCATATCTCCA
8680773 TGTATCGGCTATGAAGCAGATCGAAAATAGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGA
456 TGTATCGGCTATGAAGCAGATCGAAAATAGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGA
*
8680838 TTTTAGCCATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGT
521 TTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGT
*
8680896 CTTATCTTCCTAAGGTAGCAAG
1 CTTATCTTCCTGAGGTAGCAAG
8680918 GAAGCAGACT
Statistics
Matches: 565, Mismatches: 31, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
577 8 0.01
578 555 0.98
579 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (578 bp):
CTTATCTTCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
GGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAGCAGATAAAAAATGGC
GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
GCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAAAT
TACAGATCATATCTCCATGTATCGTCTATGGAGCAGATCAGAAATAGCGAGTCTTATCTCCATGT
ATCGGCTATGGAGAAAATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTAA
AGATACAAGTATTATCATCCTGAGGTAGCAAGGAAGCAGACTAAAGATTACAGATCATATCTCCA
TGTATCGGCTATGAAGCAGATCGAAAATAGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGA
TTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGT
Found at i:8680351 original size:400 final size:399
Alignment explanation
Indices: 8679918--8680739 Score: 1367
Period size: 400 Copynumber: 2.1 Consensus size: 399
8679908 AGCCACCAGC
* *
8679918 CTTATCTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGTAA
1 CTTATCTC-CTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
* ** * * * *
8679983 GGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCAGTTATGGAGCAGATCAGAAATAGT
65 GGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAGCAGATAAAAAATAGC
8680048 GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
130 GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
*
8680113 GCAAGAGAGCAGGTTAAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAAT
195 GCAAGAGAGCAGGTTAAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAAAT
*
8680178 TACAGATCTTATCTCCATGTATCGGCTATGGAACAGATC-GAAAATGGCGAGTCTTATCTCCATG
260 TACAGATCATATCTCCATGTATCGGCTATGGAACAGATCAG-AAATGGCGAGTCTTATCTCCATG
* * * * *
8680242 TATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTG
324 TATCGGCTATGGAGAAAATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTG
8680307 AAGATACAAGT
389 AAGATACAAGT
8680318 CTTATCTTCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
1 CTTATC-TCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
* *
8680383 TGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAGCAGATAAAAAATGGC
65 GGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAGCAGATAAAAAATAGC
*
8680448 GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTG
130 GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
* * *
8680513 GCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAATGAAACAGACTGAAAAT
195 GCAAGAGAGCAGGTTAAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAAAT
* * *
8680578 TATAGATCATATCTCCATGTATCGTCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGT
260 TACAGATCATATCTCCATGTATCGGCTATGGAACAGATCAGAAATGGCGAGTCTTATCTCCATGT
*
8680643 ATCGGCTATGGAGAAAATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCAAGAGAGCATATTGA
325 ATCGGCTATGGAGAAAATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTGA
8680708 AGATACAAGT
390 AGATACAAGT
8680718 CTTATCATCCTGAGGTAGCAAG
1 CTTATC-TCCTGAGGTAGCAAG
8680740 GAAGCAGACT
Statistics
Matches: 393, Mismatches: 27, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
400 390 0.99
401 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (399 bp):
CTTATCTCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAG
GAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAGCAGATAAAAAATAGCG
AGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAG
CAAGAGAGCAGGTTAAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAACAGACTGAAAATT
ACAGATCATATCTCCATGTATCGGCTATGGAACAGATCAGAAATGGCGAGTCTTATCTCCATGTA
TCGGCTATGGAGAAAATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTGAA
GATACAAGT
Found at i:8680394 original size:756 final size:756
Alignment explanation
Indices: 8679559--8680994 Score: 2407
Period size: 756 Copynumber: 1.9 Consensus size: 756
8679549 TTTAGCCACC
8679559 AGTCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAG
1 AGTCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAG
* * * * *
8679624 CAAGGAAGCAGACTGGAAATTACAGATCTTATCTCCATGTATCAGCTATGGAACAAATTAAAAAT
66 CAAGGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAACAAATAAAAAAT
*
8679689 GGTGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAG
131 GGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAG
*
8679754 GTGGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAA
196 GTGGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAA
* * *
8679819 AATTACAGATCTTATCTCCATGTATCAG-CTATGGAGTAGATC-GAAAATGGCGAGTTTTATCTC
261 AATTACAGATCATATCTCCATGTATC-GTCTATGGAGCAGATCAG-AAATGGCGAGTCTTATCTC
* * * * *
8679882 CATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGTAG
324 CATGTATCGGCTATGGAGAAAATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCAAGAGAGCAG
* * * *
8679947 GTTGAAGATACAAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAAA-ATTACAGATCTTA
389 ATTGAAGATACAAGTCTTATCATCCTGAGGTAGCAAGGAAGCAGACT-AAAGATTACAGATCATA
* * *
8680011 TCTCCATGTATCAGTTATGGAGCAGATC-AGAAATAGTGAGTCTTATCTCCATGTATCGGCTATG
453 TCTCCATGTATCAGCTATGAAGCAGATCGA-AAATAGCGAGTCTTATCTCCATGTATCGGCTATG
8680075 GAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATACAAGT
517 GAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATACAAGT
* **
8680140 ATTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAA-ATTACAGATCTTATCTCCATGTATCGGC
582 ATTATCTTCCTAAGGTAGCAAGGAAGCAGACT-AAATATTACAGATCTTATCTCCATGTATCCAC
* **
8680204 TATGGAACAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
646 TATGGAACAGATCGAAAACGGCGAACCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA
8680269 CCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACA
711 CCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACA
*
8680315 AGTCTTATCT-TCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTA
1 AGTCTTATCTCT-CTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTA
* * *
8680379 GCAATGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAGCAGATAAAAAA
65 GCAAGGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAACAAATAAAAAA
8680444 TGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGA
130 TGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGA
*
8680509 GGTGGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAATGAAACAGACTGA
195 GGTGGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGA
*
8680574 AAATTATAGATCATATCTCCATGTATCGTCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCC
260 AAATTACAGATCATATCTCCATGTATCGTCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCC
*
8680639 ATGTATCGGCTATGGAGAAAATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCAAGAGAGCATA
325 ATGTATCGGCTATGGAGAAAATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCAAGAGAGCAGA
8680704 TTGAAGATACAAGTCTTATCATCCTGAGGTAGCAAGGAAGCAGACTAAAGATTACAGATCATATC
390 TTGAAGATACAAGTCTTATCATCCTGAGGTAGCAAGGAAGCAGACTAAAGATTACAGATCATATC
*
8680769 TCCATGTATCGGCTATGAAGCAGATCGAAAATAGCGAGTCTTATCTCCATGTATCGGCTATGGAG
455 TCCATGTATCAGCTATGAAGCAGATCGAAAATAGCGAGTCTTATCTCCATGTATCGGCTATGGAG
* * *
8680834 CAGATTTTAGCCATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTT
520 CAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATACAAGTATT
8680899 ATCTTCCTAAGGTAGCAAGGAAGCAGACTAAATATTACAGATCTTATCTCCATGTATCCACTATG
585 ATCTTCCTAAGGTAGCAAGGAAGCAGACTAAATATTACAGATCTTATCTCCATGTATCCACTATG
* *
8680964 GAGCAGATCGAAGACGGCGAACCTTATCTCC
650 GAACAGATCGAAAACGGCGAACCTTATCTCC
8680995 CTAAGCAGTA
Statistics
Matches: 633, Mismatches: 41, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
755 8 0.01
756 623 0.98
757 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (756 bp):
AGTCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAG
CAAGGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCCATAGAACAAATAAAAAAT
GGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAG
GTGGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAACAGACTGAA
AATTACAGATCATATCTCCATGTATCGTCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCA
TGTATCGGCTATGGAGAAAATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCAAGAGAGCAGAT
TGAAGATACAAGTCTTATCATCCTGAGGTAGCAAGGAAGCAGACTAAAGATTACAGATCATATCT
CCATGTATCAGCTATGAAGCAGATCGAAAATAGCGAGTCTTATCTCCATGTATCGGCTATGGAGC
AGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATACAAGTATTA
TCTTCCTAAGGTAGCAAGGAAGCAGACTAAATATTACAGATCTTATCTCCATGTATCCACTATGG
AACAGATCGAAAACGGCGAACCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGC
CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACA
Found at i:8681033 original size:178 final size:178
Alignment explanation
Indices: 8680318--8680994 Score: 995
Period size: 178 Copynumber: 3.8 Consensus size: 178
8680308 AGATACAAGT
8680318 CTTATCT-TCCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCA
1 CTTATCTCT-CTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCA
* * * * **
8680382 ATGAAACAGACTGAAAATTACAGATCTTATCTCCATGTAT-CAGCCATAGAGCAGATAAAAAATG
65 AGGAAACAGACTGAAAATTACAGATCATATCTCCATGTATCCA-CTATGGAGCAGATCGAAAATG
8680446 GCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGC
129 GCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGC
*
8680496 CTTATCTCTCTGAGGTGGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
* * **
8680561 TGAAACAGACTGAAAATTATAGATCATATCTCCATGTATCGTCTATGGAGCAGATC-AGAAATGG
66 GGAAACAGACTGAAAATTACAGATCATATCTCCATGTATCCACTATGGAGCAGATCGA-AAATGG
* * *
8680625 CGAGTCTTATCTCCATGTATCGGCTATGGAGAAAATTTTAGCCACCAAC
130 CGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGC
* ** *
8680674 CTTATCTCTCTAAGGTAGCAAGAGAGCATATTGAAGATACAAGTCTTATCATCCTGAGGTAGCAA
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
* ** * *
8680739 GGAAGCAGACT-AAAGATTACAGATCATATCTCCATGTATCGGCTATGAAGCAGATCGAAAATAG
66 GGAAACAGACTGAAA-ATTACAGATCATATCTCCATGTATCCACTATGGAGCAGATCGAAAATGG
*
8680803 CGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATCAGC
130 CGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGC
*
8680852 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTAAGGTAGCAA
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
* * * *
8680917 GGAAGCAGACT-AAATATTACAGATCTTATCTCCATGTATCCACTATGGAGCAGATCGAAGACGG
66 GGAAACAGACTGAAA-ATTACAGATCATATCTCCATGTATCCACTATGGAGCAGATCGAAAATGG
**
8680981 CGAACCTTATCTCC
130 CGAGTCTTATCTCC
8680995 CTAAGCAGTA
Statistics
Matches: 453, Mismatches: 41, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
177 4 0.01
178 447 0.99
179 2 0.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (178 bp):
CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAA
GGAAACAGACTGAAAATTACAGATCATATCTCCATGTATCCACTATGGAGCAGATCGAAAATGGC
GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGC
Found at i:8681145 original size:88 final size:88
Alignment explanation
Indices: 8680986--8681194 Score: 278
Period size: 88 Copynumber: 2.4 Consensus size: 88
8680976 GACGGCGAAC
* * *
8680986 CTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGACGGCGAGCCTTAACCCCCTAGACAGGAGG
1 CTTATCTCTCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGAGCCTTAACCCCCTAGACAGGAGG
* **
8681051 GTAACAGGCGGGAAATTACAAAT
66 GAAACAGGCGAAAAATTACAAAT
* * *
8681074 CTTATCTCTCTAAGCAGTAGTGGGGCAGATTGAAGACGGTGAGCCTTAACCCCCTA-AGCAGTAG
1 CTTATCTCTCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGAGCCTTAACCCCCTAGA-CAGGAG
* * *
8681138 GGAAACAGGCTAAAAATTGCAGAT
65 GGAAACAGGCGAAAAATTACAAAT
*
8681162 CTTATCTCT-TAAACAGTAGTGGAGCAGATTGAA
1 CTTATCTCTCTAAGCAGTAGTGGAGCAGATTGAA
8681195 ACGAGTTCCT
Statistics
Matches: 106, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
87 23 0.22
88 83 0.78
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (88 bp):
CTTATCTCTCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGAGCCTTAACCCCCTAGACAGGAGG
GAAACAGGCGAAAAATTACAAAT
Found at i:8682808 original size:10 final size:10
Alignment explanation
Indices: 8682795--8682828 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
8682785 ATTTTTTTAA
*
8682795 ATGTATTTAT
1 ATGTATATAT
8682805 ATGTATATAT
1 ATGTATATAT
8682815 ATGTATATAT
1 ATGTATATAT
8682825 ATGT
1 ATGT
8682829 CTTCTTTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (10 bp):
ATGTATATAT
Found at i:8683454 original size:120 final size:120
Alignment explanation
Indices: 8683241--8683464 Score: 270
Period size: 120 Copynumber: 1.9 Consensus size: 120
8683231 AAAGTTTTTC
* * ** *
8683241 AAAATAAGGCAATATTTCGTGTTTGGAAGTTCGAGAAATCGTGCCTTACCATGCTGGGTTTCGAT
1 AAAATAAGGCAATATTTCATGTTTGGAAATTCGAGAAATCGTGCCCAACCATGCTGGGTTTCAAT
* * ** * *
8683306 TTTCTGTTCAACTGAATAACTGAATATCCTTTTGAAATTCCATCCATGTTTTCTT
66 TTACCGTTCAACCAAATAACTAAATATCCTTTTAAAATTCCATCCATGTTTTCTT
* * * * *
8683361 AAAATGAGGCAATATTTCATGTTTGTAAATTTGAGAAATCGTGCCCAATCGTGCTGGGTTTCAAT
1 AAAATAAGGCAATATTTCATGTTTGGAAATTCGAGAAATCGTGCCCAACCATGCTGGGTTTCAAT
* *
8683426 TTACCGTTTAACCAAAT-ATTCAAATATCCTTTTAAAATT
66 TTACCGTTCAACCAAATAACT-AAATATCCTTTTAAAATT
8683465 TCAAATGCAT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
119 2 0.02
120 83 0.98
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.38
Consensus pattern (120 bp):
AAAATAAGGCAATATTTCATGTTTGGAAATTCGAGAAATCGTGCCCAACCATGCTGGGTTTCAAT
TTACCGTTCAACCAAATAACTAAATATCCTTTTAAAATTCCATCCATGTTTTCTT
Found at i:8684640 original size:18 final size:17
Alignment explanation
Indices: 8684607--8684645 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
8684597 TTGTATAAAT
8684607 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
8684625 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
8684642 TGTG
1 TGTG
8684646 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:8684898 original size:23 final size:23
Alignment explanation
Indices: 8684871--8684968 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
8684861 AGTGTTATTG
8684871 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
8684894 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
8684917 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
8684939 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
8684962 ATCAGTG
1 ATCAGTG
8684969 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:8684937 original size:45 final size:45
Alignment explanation
Indices: 8684873--8684961 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
8684863 TGTTATTGAT
* *
8684873 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
8684918 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
8684962 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:8692002 original size:18 final size:17
Alignment explanation
Indices: 8691969--8692007 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
8691959 TTGTATAAAT
8691969 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
8691987 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
8692004 TGTG
1 TGTG
8692008 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:8692260 original size:23 final size:23
Alignment explanation
Indices: 8692233--8692330 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
8692223 AGTGTTATTG
8692233 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
8692256 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
8692279 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
8692301 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
8692324 ATCAGTG
1 ATCAGTG
8692331 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:8692299 original size:45 final size:45
Alignment explanation
Indices: 8692235--8692323 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
8692225 TGTTATTGAT
* *
8692235 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
8692280 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
8692324 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:8697053 original size:20 final size:20
Alignment explanation
Indices: 8697028--8697066 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
8697018 CAAGTTTAAA
8697028 TTTATA-GTAATTATTTTTAT
1 TTTATATGT-ATTATTTTTAT
*
8697048 TTTATATGTATTTTTTTTA
1 TTTATATGTATTATTTTTA
8697067 ATGAGATACG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (20 bp):
TTTATATGTATTATTTTTAT
Found at i:8699602 original size:22 final size:22
Alignment explanation
Indices: 8699577--8699646 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
8699567 TTTTTATTTG
8699577 ACTTCGCGATTTTAAATTTGTC
1 ACTTCGCGATTTTAAATTTGTC
** ** * *
8699599 ACTT--AAATATAAAAATTATTTG
1 ACTTCGCGAT-TTTAAATT-TGTC
8699621 ACTTCGCGATTTTAAATTTGTC
1 ACTTCGCGATTTTAAATTTGTC
8699643 ACTT
1 ACTT
8699647 AAATATATTT
Statistics
Matches: 32, Mismatches: 12, Indels: 8
0.62 0.23 0.15
Matches are distributed among these distances:
20 2 0.06
21 6 0.19
22 16 0.50
23 6 0.19
24 2 0.06
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.44
Consensus pattern (22 bp):
ACTTCGCGATTTTAAATTTGTC
Found at i:8699619 original size:44 final size:44
Alignment explanation
Indices: 8699570--8699653 Score: 168
Period size: 44 Copynumber: 1.9 Consensus size: 44
8699560 TATATTTTTT
8699570 TTATTTGACTTCGCGATTTTAAATTTGTCACTTAAATATAAAAA
1 TTATTTGACTTCGCGATTTTAAATTTGTCACTTAAATATAAAAA
8699614 TTATTTGACTTCGCGATTTTAAATTTGTCACTTAAATATA
1 TTATTTGACTTCGCGATTTTAAATTTGTCACTTAAATATA
8699654 TTTTTATATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (44 bp):
TTATTTGACTTCGCGATTTTAAATTTGTCACTTAAATATAAAAA
Found at i:8700715 original size:8 final size:8
Alignment explanation
Indices: 8700666--8700746 Score: 51
Period size: 8 Copynumber: 10.0 Consensus size: 8
8700656 TTAAATGATC
8700666 TTTTAAAA
1 TTTTAAAA
8700674 -TTTAAAA
1 TTTTAAAA
8700681 TATTTAAAA
1 T-TTTAAAA
**
8700690 AATTAAAA
1 TTTTAAAA
* *
8700698 ATTT--AT
1 TTTTAAAA
8700704 TTTTAAAA
1 TTTTAAAA
8700712 TTTTAAAA
1 TTTTAAAA
8700720 TTATTGAAAAA
1 TT-TT--AAAA
*
8700731 GTTTAAAA
1 TTTTAAAA
*
8700739 TTATAAAA
1 TTTTAAAA
8700747 AAATATTTGT
Statistics
Matches: 57, Mismatches: 9, Indels: 14
0.71 0.11 0.17
Matches are distributed among these distances:
6 4 0.07
7 7 0.12
8 30 0.53
9 9 0.16
10 2 0.04
11 5 0.09
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (8 bp):
TTTTAAAA
Found at i:8700748 original size:19 final size:19
Alignment explanation
Indices: 8700708--8700749 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8700698 ATTTATTTTT
* **
8700708 AAAATTTTAAAATTATTGA
1 AAAAGTTTAAAATTATAAA
8700727 AAAAGTTTAAAATTATAAA
1 AAAAGTTTAAAATTATAAA
8700746 AAAA
1 AAAA
8700750 TATTTGTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (19 bp):
AAAAGTTTAAAATTATAAA
Found at i:8712173 original size:66 final size:66
Alignment explanation
Indices: 8712071--8712241 Score: 186
Period size: 66 Copynumber: 2.6 Consensus size: 66
8712061 AAATATCGAA
* * * * *
8712071 TCTTCCTAAGCTCTTGAACGAGATATTAGGTATTCTCAATCCCTAA-CTCCTGAACGCAA-TATT
1 TCTTCCCAAGCTCTTGAACGAGATACTAGGTATTCTCAATCCC-AAGATCCTAAACG-AATTATC
8712134 AAG
64 AAG
* * *
8712137 TCTTCCCAAGCTTTTGAACGAGATACTAGGTCTTCTCAATCCCAAGATCCTAAACGAATTATCGA
1 TCTTCCCAAGCTCTTGAACGAGATACTAGGTATTCTCAATCCCAAGATCCTAAACGAATTATCAA
8712202 G
66 G
* * * *
8712203 TCTTCCCAAGCTCATAAATGAGATA-TCAGGTTTTCTCAA
1 TCTTCCCAAGCTCTTGAACGAGATACT-AGGTATTCTCAA
8712242 GTTCTTGAAC
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
65 5 0.06
66 84 0.94
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (66 bp):
TCTTCCCAAGCTCTTGAACGAGATACTAGGTATTCTCAATCCCAAGATCCTAAACGAATTATCAA
G
Found at i:8719725 original size:30 final size:30
Alignment explanation
Indices: 8719681--8719748 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
8719671 GATGATGAGA
* *
8719681 CGGGCCCATCAACAACGCCCACACAATTAC
1 CGGGCCCATCAACAACACCCACACAATCAC
* * *
8719711 CGGGCCTATTAACAATACCCACACAATCAC
1 CGGGCCCATCAACAACACCCACACAATCAC
8719741 CGGGCCCA
1 CGGGCCCA
8719749 ATGCCTCAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.41, G:0.15, T:0.12
Consensus pattern (30 bp):
CGGGCCCATCAACAACACCCACACAATCAC
Found at i:8719826 original size:18 final size:18
Alignment explanation
Indices: 8719803--8719839 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
8719793 GCCAAATGCT
*
8719803 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
8719821 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
8719839 T
1 T
8719840 TTTCTTTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.27, G:0.08, T:0.41
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:8721354 original size:17 final size:18
Alignment explanation
Indices: 8721321--8721356 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
8721311 ATAGGTATGT
8721321 GACCTTTGTATTTTTTTA
1 GACCTTTGTATTTTTTTA
8721339 GACCTTTGTATTTTTTTA
1 GACCTTTGTATTTTTTTA
8721357 TCTCCCACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.11, G:0.11, T:0.61
Consensus pattern (18 bp):
GACCTTTGTATTTTTTTA
Found at i:8722819 original size:125 final size:125
Alignment explanation
Indices: 8722597--8722836 Score: 372
Period size: 125 Copynumber: 1.9 Consensus size: 125
8722587 CATGAACTAT
* ** * *
8722597 TGTAGAAAAAGAGAGTACACGTGGGAGTTTTTTTCAGAAATTTTGCTGACAGTGCATCCTTCTTA
1 TGTAGAAAAAAAGAGTACACGTAAGAGCTTTTTTCAGAAATTTTACTGACAGTGCATCCTTCTTA
*
8722662 AAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTCAAGAACCAC
66 AAGCGTTTTTGACACTATTTATTCAGAAACATCTTCTCAAAATTATTTTTCAAGAACCAC
* * * * * *
8722722 TGTAGAAAAAAAGCGTCCACGTAAGAGCTTTTTTCTGTAATTTTATTGACAGTGCATCCTTCTTG
1 TGTAGAAAAAAAGAGTACACGTAAGAGCTTTTTTCAGAAATTTTACTGACAGTGCATCCTTCTTA
8722787 AAGCGTTTTTGACACTATTTATTCAGAAACATCTTCTCAAAATTATTTTT
66 AAGCGTTTTTGACACTATTTATTCAGAAACATCTTCTCAAAATTATTTTT
8722837 TCAGGGTCAA
Statistics
Matches: 103, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
125 103 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (125 bp):
TGTAGAAAAAAAGAGTACACGTAAGAGCTTTTTTCAGAAATTTTACTGACAGTGCATCCTTCTTA
AAGCGTTTTTGACACTATTTATTCAGAAACATCTTCTCAAAATTATTTTTCAAGAACCAC
Found at i:8722937 original size:35 final size:37
Alignment explanation
Indices: 8722898--8722973 Score: 102
Period size: 35 Copynumber: 2.1 Consensus size: 37
8722888 TTTTAAAAAA
*
8722898 CTAAACCCTAATTTAATTAATTT-TAACCCTA-AACC
1 CTAAACCCTAATTTAATTAATTTAGAACCCTAGAACC
* * *
8722933 CTAAATCCTAATTTAATTTATTTAGAACCCTAGAATC
1 CTAAACCCTAATTTAATTAATTTAGAACCCTAGAACC
8722970 CTAA
1 CTAA
8722974 TTTAATTAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 21 0.60
36 7 0.20
37 7 0.20
ACGTcount: A:0.39, C:0.22, G:0.03, T:0.36
Consensus pattern (37 bp):
CTAAACCCTAATTTAATTAATTTAGAACCCTAGAACC
Found at i:8723005 original size:30 final size:29
Alignment explanation
Indices: 8722928--8723008 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 29
8722918 TTTTAACCCT
* *
8722928 AAACCCTAAATCCTAATTTAATTTATTTA
1 AAACCCTAAATCCTAATTTAATTAATCTA
*
8722957 GAACCCTAGAATCCTAATTTAATTAATCTA
1 AAACCCTA-AATCCTAATTTAATTAATCTA
* *
8722987 AAATCCTAAAACCTTAATTTAA
1 AAACCCTAAATCC-TAATTTAA
8723009 ATAGTTTTTG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
29 11 0.25
30 33 0.75
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.36
Consensus pattern (29 bp):
AAACCCTAAATCCTAATTTAATTAATCTA
Found at i:8724119 original size:14 final size:15
Alignment explanation
Indices: 8724100--8724128 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8724090 TTTATACATT
8724100 ACCAAACCT-ATCCA
1 ACCAAACCTAATCCA
8724114 ACCAAACCTAATCCA
1 ACCAAACCTAATCCA
8724129 TTCATCAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.45, C:0.41, G:0.00, T:0.14
Consensus pattern (15 bp):
ACCAAACCTAATCCA
Found at i:8726537 original size:3 final size:3
Alignment explanation
Indices: 8726529--8726572 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
8726519 CAGTAATAGT
8726529 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
8726573 CTGTTTTATC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:8728574 original size:4 final size:4
Alignment explanation
Indices: 8728565--8728599 Score: 61
Period size: 4 Copynumber: 8.5 Consensus size: 4
8728555 GTACCTTCCT
8728565 CTGG CTGG CTGG CTGG CTGG CTGG CTGG CTTGG CT
1 CTGG CTGG CTGG CTGG CTGG CTGG CTGG C-TGG CT
8728600 TTTTGTAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 26 0.87
5 4 0.13
ACGTcount: A:0.00, C:0.26, G:0.46, T:0.29
Consensus pattern (4 bp):
CTGG
Found at i:8735208 original size:31 final size:31
Alignment explanation
Indices: 8735171--8735244 Score: 130
Period size: 31 Copynumber: 2.4 Consensus size: 31
8735161 GTGGTTCTGG
8735171 ACACGCCCATGTGGTCAGGCCGTGTGATCAC
1 ACACGCCCATGTGGTCAGGCCGTGTGATCAC
*
8735202 ACACGCCCATGTGGTCAGGCCGTGTGGTCAC
1 ACACGCCCATGTGGTCAGGCCGTGTGATCAC
*
8735233 ACAAGCCCATGT
1 ACACGCCCATGT
8735245 CCTTAACCCG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.19
Consensus pattern (31 bp):
ACACGCCCATGTGGTCAGGCCGTGTGATCAC
Found at i:8740643 original size:5 final size:5
Alignment explanation
Indices: 8740635--8740660 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8740625 AATATATATA
8740635 AAAAG AAAAG AAAAG AAAAG AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG A
8740661 TGGACATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:8741157 original size:57 final size:55
Alignment explanation
Indices: 8741088--8741212 Score: 160
Period size: 57 Copynumber: 2.2 Consensus size: 55
8741078 ATAGCTTTTG
* *
8741088 AATACTGCTTCTTTTGAATAAATGGTTTGTATGTTTAAATCGATTGTCATATTGTA
1 AATATTGCTTCTTTTGAATAAATGGTTTGTATGTTTAAATCAATTGTCATATTG-A
** * * * *
8741144 TAATATTGCTTCTTTTGAATCGATTGTTTTTATGTTTAAATCAATTGTTATGTTGA
1 -AATATTGCTTCTTTTGAATAAATGGTTTGTATGTTTAAATCAATTGTCATATTGA
8741200 AATATTGCTTCTT
1 AATATTGCTTCTT
8741213 CTTATTTTGA
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
55 13 0.22
56 1 0.02
57 46 0.77
ACGTcount: A:0.26, C:0.09, G:0.14, T:0.50
Consensus pattern (55 bp):
AATATTGCTTCTTTTGAATAAATGGTTTGTATGTTTAAATCAATTGTCATATTGA
Found at i:8741185 original size:21 final size:21
Alignment explanation
Indices: 8741161--8741253 Score: 63
Period size: 21 Copynumber: 4.5 Consensus size: 21
8741151 GCTTCTTTTG
8741161 AATCGATTGTTTTTATGTTTA
1 AATCGATTGTTTTTATGTTTA
* *
8741182 AATCAATTG---TTATGTTGA
1 AATCGATTGTTTTTATGTTTA
*
8741200 AAT--ATTGCTTCTTCTTAT-TTTG
1 AATCGATTG--T-TT-TTATGTTTA
*
8741222 AATCGATTGTTTATATGTTTA
1 AATCGATTGTTTTTATGTTTA
*
8741243 AACCGATTGTT
1 AATCGATTGTT
8741254 ATGTTGGAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 20
0.67 0.09 0.24
Matches are distributed among these distances:
16 4 0.07
18 11 0.20
20 3 0.05
21 23 0.42
22 6 0.11
23 4 0.07
24 4 0.07
ACGTcount: A:0.26, C:0.09, G:0.14, T:0.52
Consensus pattern (21 bp):
AATCGATTGTTTTTATGTTTA
Found at i:8741277 original size:55 final size:55
Alignment explanation
Indices: 8741087--8741303 Score: 200
Period size: 61 Copynumber: 3.8 Consensus size: 55
8741077 GATAGCTTTT
* ** * * * *
8741087 GAATACTGCTTCTTTTGAATAAATGGTTTGTATGTTTAAATCGATTGTCATATTG
1 GAATACCGCTTCTTTTGAATCGATTGTTTATATGTTTAAATCGATTGTTATGTTG
* ** * *
8741142 TATAATATTGCTTCTTTTGAATCGATTGTTTTTATGTTTAAATCAATTGTTATGTTG
1 --GAATACCGCTTCTTTTGAATCGATTGTTTATATGTTTAAATCGATTGTTATGTTG
* * * *
8741199 AAATATTGCTTCTTCTTATTTTGAATCGATTGTTTATATGTTTAAACCGATTGTTATGTTG
1 GAATA---C--C-GCTTCTTTTGAATCGATTGTTTATATGTTTAAATCGATTGTTATGTTG
* *
8741260 GAATACCGCTTCTTTTGAATTGATTGTTTATATATTTAAATCGA
1 GAATACCGCTTCTTTTGAATCGATTGTTTATATGTTTAAATCGA
8741304 ATATTACGTA
Statistics
Matches: 131, Mismatches: 23, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
55 36 0.27
56 1 0.01
57 46 0.35
58 1 0.01
61 47 0.36
ACGTcount: A:0.26, C:0.09, G:0.15, T:0.49
Consensus pattern (55 bp):
GAATACCGCTTCTTTTGAATCGATTGTTTATATGTTTAAATCGATTGTTATGTTG
Found at i:8742112 original size:14 final size:14
Alignment explanation
Indices: 8742093--8742124 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
8742083 ATTTATTTAA
8742093 TTCAGTATAACAAT
1 TTCAGTATAACAAT
8742107 TTCAGTATAACAAT
1 TTCAGTATAACAAT
8742121 TTCA
1 TTCA
8742125 TTTAATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.38
Consensus pattern (14 bp):
TTCAGTATAACAAT
Found at i:8743697 original size:11 final size:11
Alignment explanation
Indices: 8743683--8743723 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
8743673 TGTTTTCTCC
8743683 CTATTTTGCTA
1 CTATTTTGCTA
*
8743694 CTATTTTACTA
1 CTATTTTGCTA
* *
8743705 TTATGTTGCTA
1 CTATTTTGCTA
8743716 CTATTTTG
1 CTATTTTG
8743724 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:8746101 original size:35 final size:35
Alignment explanation
Indices: 8746054--8746152 Score: 103
Period size: 35 Copynumber: 2.8 Consensus size: 35
8746044 TATATCCGAG
* *
8746054 TATACAATTTCAATATAAGTTCACATGTAATCGAA
1 TATACAAATTCAATATAAGTTCACATGTAATAGAA
** * *
8746089 TACTA-AAATTCAATATAACCTCACATGCAGTAGAA
1 TA-TACAAATTCAATATAAGTTCACATGTAATAGAA
*
8746124 TATACAAGTTCAATATAAGCTT-ACATGTA
1 TATACAAATTCAATATAAG-TTCACATGTA
8746153 CTTTCCTATG
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
34 2 0.04
35 46 0.90
36 3 0.06
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.31
Consensus pattern (35 bp):
TATACAAATTCAATATAAGTTCACATGTAATAGAA
Found at i:8753775 original size:35 final size:35
Alignment explanation
Indices: 8753713--8753849 Score: 118
Period size: 35 Copynumber: 3.9 Consensus size: 35
8753703 CACATATGGT
* * * * *
8753713 CGAATATGCATATTTAAGATAACTTCACATATATC
1 CGAATATACAAATTCAATATAACTTCACATGTATC
* * *
8753748 CGAGTATACAATTTCAATATAAGTTCACATGTAAT-
1 CGAATATACAAATTCAATATAACTTCACATGT-ATC
* * *
8753783 CGAATACTA-AAATTCAATATAACCTCACATGCACC
1 CGAATA-TACAAATTCAATATAACTTCACATGTATC
*
8753818 CGAATATACAAGTTCAATATAAGCTT-ACATGT
1 CGAATATACAAATTCAATATAA-CTTCACATGT
8753850 GCTTACCTAT
Statistics
Matches: 80, Mismatches: 17, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
34 3 0.04
35 71 0.89
36 6 0.08
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (35 bp):
CGAATATACAAATTCAATATAACTTCACATGTATC
Found at i:8754630 original size:30 final size:31
Alignment explanation
Indices: 8754606--8754664 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
8754596 GTAAATACTC
* *
8754606 AAAATTTGAGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAGGACTAATAGTGTAAATATGA
*
8754636 AAAATTTGAAGGACTAATAGTGCAAATAT
1 AAAATTTGAAGGACTAATAGTGTAAATAT
8754665 CTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGACTAATAGTGTAAATATGA
Found at i:8754929 original size:8 final size:8
Alignment explanation
Indices: 8754918--8754942 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
8754908 TTTAATAAGA
8754918 TATTTTAT
1 TATTTTAT
8754926 TATTTTAT
1 TATTTTAT
8754934 TATTTTAT
1 TATTTTAT
8754942 T
1 T
8754943 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:8756416 original size:28 final size:25
Alignment explanation
Indices: 8756382--8756435 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 25
8756372 GATTAAGTTT
8756382 TTATTATATATTGCTATTATTATTATTA
1 TTATTAT-TATT-CTA-TATTATTATTA
*
8756410 TTATTATTATTTTATATTATTATTA
1 TTATTATTATTCTATATTATTATTA
8756435 T
1 T
8756436 GTTATATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 12 0.48
26 2 0.08
27 4 0.16
28 7 0.28
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (25 bp):
TTATTATTATTCTATATTATTATTA
Found at i:8756453 original size:3 final size:3
Alignment explanation
Indices: 8756382--8756435 Score: 67
Period size: 3 Copynumber: 18.3 Consensus size: 3
8756372 GATTAAGTTT
* *
8756382 TTA TTA TATA TTG CTA TTA TTA TTA TTA TTA TTA TTA TT- TTA -TA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8756426 TTA TTA TTA T
1 TTA TTA TTA T
8756436 GTTATATTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
2 4 0.09
3 37 0.84
4 3 0.07
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:8757005 original size:24 final size:25
Alignment explanation
Indices: 8756967--8757023 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
8756957 TATGTATATA
* *
8756967 ATATAAATTCTTAATACCATATTAT
1 ATATATATTCTTAATACCACATTAT
* *
8756992 GTATATATT-TTAATACTACATTAT
1 ATATATATTCTTAATACCACATTAT
8757016 ATATATAT
1 ATATATAT
8757024 GTATTTTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 20 0.74
25 7 0.26
ACGTcount: A:0.42, C:0.09, G:0.02, T:0.47
Consensus pattern (25 bp):
ATATATATTCTTAATACCACATTAT
Found at i:8757231 original size:20 final size:23
Alignment explanation
Indices: 8757180--8757274 Score: 70
Period size: 22 Copynumber: 4.0 Consensus size: 23
8757170 ATCGTATACG
8757180 TTTTATATATATTATGTATATAT
1 TTTTATATATATTATGTATATAT
*
8757203 TTTCA-ATATTATTA-GT-TATAT
1 TTTTATATA-TATTATGTATATAT
*
8757224 TTTTATATACTATTCCATGTACATAT
1 TTTTATATA-TATT--ATGTATATAT
** * *
8757250 TTCCAGATCATCTTATGTATATAT
1 TTTTATAT-ATATTATGTATATAT
8757274 T
1 T
8757275 CTTAAACACT
Statistics
Matches: 56, Mismatches: 9, Indels: 13
0.72 0.12 0.17
Matches are distributed among these distances:
21 9 0.16
22 12 0.21
23 9 0.16
24 11 0.20
25 2 0.04
26 12 0.21
27 1 0.02
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.54
Consensus pattern (23 bp):
TTTTATATATATTATGTATATAT
Found at i:8757570 original size:11 final size:11
Alignment explanation
Indices: 8757550--8757578 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8757540 ATATTCATTT
8757550 TATATA-TATG
1 TATATATTATG
8757560 TATATATTATG
1 TATATATTATG
8757571 TATATATT
1 TATATATT
8757579 TTAACATTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.33
11 12 0.67
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (11 bp):
TATATATTATG
Found at i:8757616 original size:20 final size:20
Alignment explanation
Indices: 8757562--8757622 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
8757552 TATATATGTA
*
8757562 TATATTATGTATATATTTTAAC
1 TATATTAGGTATAT-TTTT-AC
* *
8757584 -ATTACTAGTTATATTTTTAC
1 TA-TATTAGGTATATTTTTAC
*
8757604 TATATTAGGTATATCTTTA
1 TATATTAGGTATATTTTTA
8757623 TCGTTTTTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
20 16 0.52
21 6 0.19
22 9 0.29
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.54
Consensus pattern (20 bp):
TATATTAGGTATATTTTTAC
Found at i:8761097 original size:51 final size:51
Alignment explanation
Indices: 8761042--8761173 Score: 201
Period size: 51 Copynumber: 2.6 Consensus size: 51
8761032 GACTAACACA
* *
8761042 ATGGATGCCATGGAGCCTCACTCACATGGTCTTACACCTCATATCATATTT
1 ATGGATGCCATGGAGCCTCACTCACATGGTCTCACACCTCATATCATATCT
* * *
8761093 ATGGATGCCATGAAACCTCACTCAGATGGTCTCACACCTCATATCATATCT
1 ATGGATGCCATGGAGCCTCACTCACATGGTCTCACACCTCATATCATATCT
**
8761144 ATGGATATCATGGAGCCTCACTCACATGGT
1 ATGGATGCCATGGAGCCTCACTCACATGGT
8761174 TTTATATTGT
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 71 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (51 bp):
ATGGATGCCATGGAGCCTCACTCACATGGTCTCACACCTCATATCATATCT
Found at i:8763255 original size:38 final size:38
Alignment explanation
Indices: 8763204--8763284 Score: 162
Period size: 38 Copynumber: 2.1 Consensus size: 38
8763194 CCCCTTTCAT
8763204 TCATACCCTATTGTTCTTACACCTTTCATCATCCTCAC
1 TCATACCCTATTGTTCTTACACCTTTCATCATCCTCAC
8763242 TCATACCCTATTGTTCTTACACCTTTCATCATCCTCAC
1 TCATACCCTATTGTTCTTACACCTTTCATCATCCTCAC
8763280 TCATA
1 TCATA
8763285 AACAATCATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.22, C:0.36, G:0.02, T:0.40
Consensus pattern (38 bp):
TCATACCCTATTGTTCTTACACCTTTCATCATCCTCAC
Found at i:8764588 original size:16 final size:16
Alignment explanation
Indices: 8764567--8764618 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
8764557 TTTGGTTCGC
8764567 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8764583 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
8764599 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
8764615 TGTA
1 TGTA
8764619 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:8764665 original size:45 final size:44
Alignment explanation
Indices: 8764599--8764693 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
8764589 GGATTAGAGG
* *
8764599 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
8764644 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
8764688 TGTAAT
1 TGTAAT
8764694 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:8764876 original size:18 final size:17
Alignment explanation
Indices: 8764855--8764889 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8764845 TTATTATTTA
*
8764855 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
8764873 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
8764890 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:8764883 original size:28 final size:27
Alignment explanation
Indices: 8764813--8764885 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
8764803 TTTATTATCA
*
8764813 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
8764841 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
8764868 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
8764886 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:8765023 original size:18 final size:17
Alignment explanation
Indices: 8765002--8765036 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8764992 TTATTATTAA
*
8765002 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
8765020 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
8765037 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:8765048 original size:147 final size:149
Alignment explanation
Indices: 8764774--8765048 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
8764764 ATGATTATTG
*
8764774 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
*
8764839 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
8764904 AGAAATTTGTTTTGGTAAA
131 AGAAATTTGTTTTGGTAAA
*
8764923 TTATT-TTATTTAAATTTTAATAAGATTA-TTAATATCAATAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
8764986 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
8765049 ATATTCTTAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 95 0.77
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AGAAATTTGTTTTGGTAAA
Found at i:8765080 original size:54 final size:54
Alignment explanation
Indices: 8765022--8765200 Score: 128
Period size: 55 Copynumber: 3.1 Consensus size: 54
8765012 ATTAAAATAT
*
8765022 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
8765076 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
8765139 TAT
53 -AC
*
8765142 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
8765196 ATAAT
1 ATAAT
8765201 ATATGATACT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:8765143 original size:18 final size:17
Alignment explanation
Indices: 8765122--8765156 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8765112 TTATTATTAA
8765122 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
8765140 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
8765157 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:8765271 original size:18 final size:17
Alignment explanation
Indices: 8765232--8765263 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8765222 TTTTAAATAA
8765232 TTAATATTAAATATATT
1 TTAATATTAAATATATT
8765249 TTAAT-TTAAATATAT
1 TTAATATTAAATATAT
8765264 GATTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAATATTAAATATATT
Found at i:8765288 original size:120 final size:120
Alignment explanation
Indices: 8764985--8765277 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
8764975 ATCATATTTA
8764985 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
8765050 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
* *
8765105 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
8765170 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATA-AAATTTT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAA--AT
* * *
8765226 AA-ATAATTAATATTAAATATATTTTAATTTAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
8765278 TAAAATAATT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 3 0.02
120 155 0.96
121 3 0.02
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
Found at i:8765388 original size:91 final size:91
Alignment explanation
Indices: 8765293--8765481 Score: 254
Period size: 91 Copynumber: 2.1 Consensus size: 91
8765283 TAATTATAAC
* * * *
8765293 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAATAA
*
8765357 TAATATAAAATTTCATAAAATTCTTGA
65 TAATATAAAATTTCATAAAATTCTTAA
* * *
8765384 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
* * * *
8765449 GATATATAATTTCATGAAATTGTTAA
66 AATATAAAATTTCATAAAATTCTTAA
8765475 TAATAAA
1 TAATAAA
8765482 ATGTTCTTCT
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
91 82 0.96
92 3 0.04
ACGTcount: A:0.48, C:0.03, G:0.04, T:0.44
Consensus pattern (91 bp):
TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATAAAATTTCATAAAATTCTTAA
Found at i:8766029 original size:12 final size:12
Alignment explanation
Indices: 8766014--8766043 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8766004 AATACAAACA
8766014 ACAGAAGCTGCT
1 ACAGAAGCTGCT
8766026 ACAGAAGCTGCT
1 ACAGAAGCTGCT
*
8766038 AAAGAA
1 ACAGAA
8766044 ATTAACCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.13
Consensus pattern (12 bp):
ACAGAAGCTGCT
Found at i:8766324 original size:14 final size:14
Alignment explanation
Indices: 8766305--8766335 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
8766295 AAAATATTAA
8766305 CAACAAATAGTTCC
1 CAACAAATAGTTCC
8766319 CAACAAATAGTTCC
1 CAACAAATAGTTCC
8766333 CAA
1 CAA
8766336 TTGCCAAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.29, G:0.06, T:0.19
Consensus pattern (14 bp):
CAACAAATAGTTCC
Found at i:8776576 original size:41 final size:41
Alignment explanation
Indices: 8776513--8776594 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
8776503 TATATTTGAC
8776513 TTTGAAAGATTTGAAAAGAAAGAGTATCAGTTCAGAGATAA
1 TTTGAAAGATTTGAAAAGAAAGAGTATCAGTTCAGAGATAA
*
8776554 TTTGAAAGATTTGATAAA-AAAGAGTATCGGTTCAGAGATAA
1 TTTGAAAGATTTGA-AAAGAAAGAGTATCAGTTCAGAGATAA
8776595 ATCTCTAATC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
41 36 0.92
42 3 0.08
ACGTcount: A:0.45, C:0.05, G:0.22, T:0.28
Consensus pattern (41 bp):
TTTGAAAGATTTGAAAAGAAAGAGTATCAGTTCAGAGATAA
Found at i:8777654 original size:206 final size:206
Alignment explanation
Indices: 8777300--8777713 Score: 828
Period size: 206 Copynumber: 2.0 Consensus size: 206
8777290 CATTAACTAG
8777300 ATCTATGGATTCCCTTATAGATTTGACTCTAATCCGGCAGATTTATGTCGTCCTATCTCTAGGAT
1 ATCTATGGATTCCCTTATAGATTTGACTCTAATCCGGCAGATTTATGTCGTCCTATCTCTAGGAT
8777365 TGCATACAACTCCGCTTAATTATGAATGCTCTACTCTTAAACAAGGACTTTTCCTCCACTGAGTA
66 TGCATACAACTCCGCTTAATTATGAATGCTCTACTCTTAAACAAGGACTTTTCCTCCACTGAGTA
8777430 AGCACATCAAAAACCTGAATTAATATATTGGAATATTAAAGCAATGACTAAAACTCACAATTAAG
131 AGCACATCAAAAACCTGAATTAATATATTGGAATATTAAAGCAATGACTAAAACTCACAATTAAG
8777495 AATAAGAATAA
196 AATAAGAATAA
8777506 ATCTATGGATTCCCTTATAGATTTGACTCTAATCCGGCAGATTTATGTCGTCCTATCTCTAGGAT
1 ATCTATGGATTCCCTTATAGATTTGACTCTAATCCGGCAGATTTATGTCGTCCTATCTCTAGGAT
8777571 TGCATACAACTCCGCTTAATTATGAATGCTCTACTCTTAAACAAGGACTTTTCCTCCACTGAGTA
66 TGCATACAACTCCGCTTAATTATGAATGCTCTACTCTTAAACAAGGACTTTTCCTCCACTGAGTA
8777636 AGCACATCAAAAACCTGAATTAATATATTGGAATATTAAAGCAATGACTAAAACTCACAATTAAG
131 AGCACATCAAAAACCTGAATTAATATATTGGAATATTAAAGCAATGACTAAAACTCACAATTAAG
8777701 AATAAGAATAA
196 AATAAGAATAA
8777712 AT
1 AT
8777714 ATTTATCATA
Statistics
Matches: 208, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
206 208 1.00
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (206 bp):
ATCTATGGATTCCCTTATAGATTTGACTCTAATCCGGCAGATTTATGTCGTCCTATCTCTAGGAT
TGCATACAACTCCGCTTAATTATGAATGCTCTACTCTTAAACAAGGACTTTTCCTCCACTGAGTA
AGCACATCAAAAACCTGAATTAATATATTGGAATATTAAAGCAATGACTAAAACTCACAATTAAG
AATAAGAATAA
Found at i:8778182 original size:30 final size:28
Alignment explanation
Indices: 8778139--8778198 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 28
8778129 GACACGGCCA
8778139 TGTCACATGGGCGTGTGG-TCTACCCGTG
1 TGTCACATGGGCGTGTGGATC-ACCCGTG
8778167 TGTCACACGTGGGCGTGTGGATCACCCGTG
1 TGTCACA--TGGGCGTGTGGATCACCCGTG
8778197 TG
1 TG
8778199 GAAGTGCCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
28 7 0.24
30 20 0.69
31 2 0.07
ACGTcount: A:0.12, C:0.25, G:0.37, T:0.27
Consensus pattern (28 bp):
TGTCACATGGGCGTGTGGATCACCCGTG
Found at i:8781660 original size:20 final size:20
Alignment explanation
Indices: 8781630--8781680 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
8781620 TGTTTTGACT
8781630 TATTAAATATTTA-AATAAAC
1 TATT-AATATTTATAATAAAC
* *
8781650 TATATAATATTTATTATAAAT
1 TAT-TAATATTTATAATAAAC
8781671 TATTAATATT
1 TATTAATATT
8781681 AATATTAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTAATATTTATAATAAAC
Found at i:8781669 original size:25 final size:24
Alignment explanation
Indices: 8781637--8781715 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 24
8781627 ACTTATTAAA
8781637 TATTTAAA-TAAACTATATAATATT
1 TATTTAAACTAAA-TATATAATATT
*
8781661 TATTATAAATTATTAATAT-TAATATT
1 TATT-TAAACTA--AATATATAATATT
* * *
8781687 AATTTAAACTAAATTACATAGTATT
1 TATTTAAACTAAA-TATATAATATT
8781712 TATT
1 TATT
8781716 ATTAATTATT
Statistics
Matches: 44, Mismatches: 5, Indels: 11
0.73 0.08 0.18
Matches are distributed among these distances:
23 2 0.05
24 6 0.14
25 19 0.43
26 12 0.27
27 3 0.07
28 2 0.05
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.48
Consensus pattern (24 bp):
TATTTAAACTAAATATATAATATT
Found at i:8789739 original size:3 final size:3
Alignment explanation
Indices: 8789731--8790080 Score: 160
Period size: 3 Copynumber: 115.0 Consensus size: 3
8789721 TAAAAATGAC
*
8789731 AAT AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * ** * * *
8789779 AGT AA- AAA AAT GAT GGT AAA AAT AAT AGT AAT AAT AAT -AT ACT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * * * * **
8789826 AAT AGT AAT AAC AA- AAC AAT AGT AAT AGT AATT ACC AA- AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
* * * *
8789870 AAT AAT AAT AGT AAT AAT AAT AAG ACCAT AAT AAT AAT AAA AAGA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A--AT AAT AAT AAT AAT AA-T AAT
* * *
8789918 AAT AGCAT -GT AAAT AAT AAT AAT AAT AAT AAT AGT ATAT ATT AAT AAT
1 AAT A--AT AAT -AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* * * * * * * *
8789966 GAC AAT AAT -AG AAT -AT AAT AAA AAC AA- ATAT ACT ATGT CAAT AAG
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT A-AT -AAT AAT
* * * * * *
8790011 GAT AAT AGT AGT AAT AGT AAT AAA AAC AAT AAT AAT AA- ATAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT
* *
8790056 AAT AGAA AAT AAT AAT AAA AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT
8790081 TAATTTGAAA
Statistics
Matches: 260, Mismatches: 64, Indels: 46
0.70 0.17 0.12
Matches are distributed among these distances:
2 14 0.05
3 225 0.87
4 16 0.06
5 5 0.02
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:8789847 original size:41 final size:41
Alignment explanation
Indices: 8789797--8789877 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 41
8789787 AATGATGGTA
* * *
8789797 AAAATAATAGTAATAATAATATA-CTAAATAATAGTAATAAC
1 AAAACAATAGTAATAATAAT-TACCAAAATAATAATAATAAC
*
8789838 AAAACAATAGTAATAGTAATTACCAAAATAATAATAATAA
1 AAAACAATAGTAATAATAATTACCAAAATAATAATAATAA
8789878 TAGTAATAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 2 0.06
41 33 0.94
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.27
Consensus pattern (41 bp):
AAAACAATAGTAATAATAATTACCAAAATAATAATAATAAC
Found at i:8789984 original size:22 final size:24
Alignment explanation
Indices: 8789933--8790069 Score: 79
Period size: 25 Copynumber: 5.8 Consensus size: 24
8789923 CATGTAAATA
*
8789933 ATAATAATAATAATAATAGTATAT
1 ATAATAATAACAATAATAGTATAT
*
8789957 ATTAATAATGACAATAATAG-A-AT
1 A-TAATAATAACAATAATAGTATAT
*
8789980 ATAATAAAAAC-A-AATA-TACTAT
1 ATAATAATAACAATAATAGTA-TAT
* ** * *
8790002 GTCAATAAGGATAATAGTAGTA-AT
1 AT-AATAATAACAATAATAGTATAT
* * *
8790026 AGTAATAAAAACAATAATAATAAAT
1 A-TAATAATAACAATAATAGTATAT
*
8790051 ATAATAATAGAAAATAATA
1 ATAATAATA-ACAATAATA
8790070 ATAAAAATAA
Statistics
Matches: 85, Mismatches: 17, Indels: 21
0.69 0.14 0.17
Matches are distributed among these distances:
20 5 0.06
21 1 0.01
22 11 0.13
23 9 0.11
24 26 0.31
25 31 0.36
26 2 0.02
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (24 bp):
ATAATAATAACAATAATAGTATAT
Done.