Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 281 of 325
Found at i:91768689 original size:45 final size:45
Alignment explanation
Indices: 91768639--91768793 Score: 132
Period size: 45 Copynumber: 3.3 Consensus size: 45
91768629 TGAAAGTTAT
**
91768639 AAAAATTATTCAATTTTATTAAAAATTAAAAAAT-TAAAAAAATAA
1 AAAAATTATAAAATTTTA-TAAAAATTAAAAAATATAAAAAAATAA
* * *
91768684 AAAAATTGTAAAATTTTATAAAAATTATAAAATATAGAAAAATATA
1 AAAAATTATAAAATTTTATAAAAATTAAAAAATATAAAAAAATA-A
** ** **
91768730 AAATTTTATAAAGAAAATTATAAAAATGTAAAGAAATATAAAATTCATAAA
1 AAAAATTAT-AA-AATTTTATAAAAAT-TAAA-AAATATAAAA-AAAT-AA
91768781 AAAAATTATAAAA
1 AAAAATTATAAAA
91768794 ATTATCGTAC
Statistics
Matches: 86, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
44 14 0.16
45 24 0.28
46 7 0.08
47 2 0.02
48 12 0.14
49 5 0.06
50 11 0.13
51 10 0.12
52 1 0.01
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (45 bp):
AAAAATTATAAAATTTTATAAAAATTAAAAAATATAAAAAAATAA
Found at i:91768696 original size:9 final size:9
Alignment explanation
Indices: 91768605--91768798 Score: 82
Period size: 9 Copynumber: 20.9 Consensus size: 9
91768595 TGTAACAAAT
*
91768605 AAAATGATA
1 AAAATTATA
91768614 AAAA--ATA
1 AAAATTATA
*
91768621 AAAATTAATG
1 AAAATT-ATA
*
91768631 AAAGTTATA
1 AAAATTATA
*
91768640 AAAATTATTC
1 AAAATTA-TA
**
91768650 AATTTTATTA
1 AAAATTA-TA
91768660 AAAATTA-A
1 AAAATTATA
91768668 AAAATTA-A
1 AAAATTATA
* *
91768676 AAAAATAAA
1 AAAATTATA
*
91768685 AAAATTGTA
1 AAAATTATA
*
91768694 AAATTTTATA
1 AAA-ATTATA
91768704 AAAATTAT-
1 AAAATTATA
91768712 AAAA-TATA
1 AAAATTATA
*
91768720 GAAAAATATA
1 -AAAATTATA
*
91768730 AAATTTTATAAA
1 AAA-ATTAT--A
91768742 GAAAATTATA
1 -AAAATTATA
91768752 AAAATGTA-A
1 AAAAT-TATA
91768761 AGAAA-TAT-
1 A-AAATTATA
91768769 AAAATTCATAAAA
1 AAAATT-AT---A
91768782 AAAATTATA
1 AAAATTATA
91768791 AAAATTAT
1 AAAATTAT
91768799 CGTACAAAAA
Statistics
Matches: 143, Mismatches: 20, Indels: 44
0.69 0.10 0.21
Matches are distributed among these distances:
7 13 0.09
8 23 0.16
9 51 0.36
10 40 0.28
12 7 0.05
13 9 0.06
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (9 bp):
AAAATTATA
Found at i:91768696 original size:17 final size:17
Alignment explanation
Indices: 91768658--91768795 Score: 73
Period size: 17 Copynumber: 7.4 Consensus size: 17
91768648 TCAATTTTAT
*
91768658 TAAAAATTAAAAAATTA
1 TAAAAATAAAAAAATTA
* *
91768675 AAAAAATAAAAAAATTG
1 TAAAAATAAAAAAATTA
* *
91768692 TAAAATTTTATAAAAATTA
1 TAAAA--ATAAAAAAATTA
*
91768711 TAAAATATAGAAAAA-TA
1 TAAAA-ATAAAAAAATTA
91768728 TAAAATTTTATAAAGAAAATTA
1 TAAAA----ATAAA-AAAATTA
*
91768750 TAAAAATGTAAAGAAA-TA
1 TAAAAA--TAAAAAAATTA
91768768 TAAAATTCATAAAAAAAATTA
1 TAAAA---AT-AAAAAAATTA
91768789 TAAAAAT
1 TAAAAAT
91768796 TATCGTACAA
Statistics
Matches: 95, Mismatches: 12, Indels: 27
0.71 0.09 0.20
Matches are distributed among these distances:
17 25 0.26
18 18 0.19
19 18 0.19
20 15 0.16
21 12 0.13
22 7 0.07
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.29
Consensus pattern (17 bp):
TAAAAATAAAAAAATTA
Found at i:91768763 original size:20 final size:21
Alignment explanation
Indices: 91768704--91768795 Score: 72
Period size: 22 Copynumber: 4.7 Consensus size: 21
91768694 AAATTTTATA
91768704 AAAATTAT-AAAAT-AT--AG
1 AAAATTATAAAAATCATAAAG
* * *
91768721 AAAAATATAAAATTTTATAAAG
1 AAAATTATAAAA-ATCATAAAG
*
91768743 AAAATTATAAAAAT-GTAAAG
1 AAAATTATAAAAATCATAAAG
* *
91768763 -AAA-TATAAAATTCATAAAA
1 AAAATTATAAAAATCATAAAG
91768782 AAAATTATAAAAAT
1 AAAATTATAAAAAT
91768796 TATCGTACAA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
17 7 0.12
18 11 0.19
19 8 0.14
20 10 0.17
21 9 0.16
22 13 0.22
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.28
Consensus pattern (21 bp):
AAAATTATAAAAATCATAAAG
Found at i:91768794 original size:10 final size:10
Alignment explanation
Indices: 91768665--91768755 Score: 54
Period size: 10 Copynumber: 9.6 Consensus size: 10
91768655 TATTAAAAAT
91768665 TAAAAAATTA
1 TAAAAAATTA
91768675 -AAAAAA-TA
1 TAAAAAATTA
*
91768683 -AAAAAATTG
1 TAAAAAATTA
**
91768692 TAAAATTTTA
1 TAAAAAATTA
91768702 T-AAAAATTA
1 TAAAAAATTA
91768711 T--AAAA-TA
1 TAAAAAATTA
91768718 TAGAAAAA-TA
1 TA-AAAAATTA
**
91768728 TAAAATTTTA
1 TAAAAAATTA
91768738 TAAAGAAAATTA
1 T-AA-AAAATTA
91768750 TAAAAA
1 TAAAAA
91768756 TGTAAAGAAA
Statistics
Matches: 63, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
7 3 0.05
8 12 0.19
9 17 0.27
10 21 0.33
11 4 0.06
12 6 0.10
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:91768794 original size:39 final size:40
Alignment explanation
Indices: 91768666--91768795 Score: 132
Period size: 39 Copynumber: 3.4 Consensus size: 40
91768656 ATTAAAAATT
* *
91768666 AAAAAATTA-AAAAA-ATAAAAAAATTGTAAAATTT--T-A
1 AAAAAATTATAAAAATATAGAAAAA-TATAAAATTTCATAA
* *
91768702 TAAAAATTAT-AAAATATAGAAAAATATAAAATTTTATAA
1 AAAAAATTATAAAAATATAGAAAAATATAAAATTTCATAA
* *
91768741 AGAAAATTATAAAAATGTA-AAGAAATATAAAA-TTCATAA
1 AAAAAATTATAAAAATATAGAA-AAATATAAAATTTCATAA
91768780 AAAAAATTATAAAAAT
1 AAAAAATTATAAAAAT
91768796 TATCGTACAA
Statistics
Matches: 79, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
36 21 0.27
37 8 0.10
38 1 0.01
39 32 0.41
40 17 0.22
ACGTcount: A:0.67, C:0.01, G:0.04, T:0.28
Consensus pattern (40 bp):
AAAAAATTATAAAAATATAGAAAAATATAAAATTTCATAA
Found at i:91768995 original size:29 final size:29
Alignment explanation
Indices: 91768951--91769034 Score: 89
Period size: 29 Copynumber: 2.9 Consensus size: 29
91768941 TTAATGGTGC
* * *
91768951 ATTTTATAATTATTTATGATTTTTATAAA
1 ATTTTAAAATTTTTTATAATTTTTATAAA
* *
91768980 ATTTTACAATTTTTTATAATTTTT-TACA
1 ATTTTAAAATTTTTTATAATTTTTATAAA
*
91769008 ATCTTTATAAATTTTTCATAATTTTTA
1 AT-TTTA-AAATTTTTTATAATTTTTA
91769035 ATATTTTTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 5 0.11
29 25 0.54
30 16 0.35
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.60
Consensus pattern (29 bp):
ATTTTAAAATTTTTTATAATTTTTATAAA
Found at i:91768997 original size:39 final size:40
Alignment explanation
Indices: 91768952--91769033 Score: 103
Period size: 39 Copynumber: 2.1 Consensus size: 40
91768942 TAATGGTGCA
** *
91768952 TTTTATAATTATTTATGATTTTTATAAAATTTT-ACAATT
1 TTTTATAATTATTTACAATCTTTATAAAATTTTCACAATT
* * *
91768991 TTTTATAATTTTTTACAATCTTTATAAATTTTTCATAATT
1 TTTTATAATTATTTACAATCTTTATAAAATTTTCACAATT
91769031 TTT
1 TTT
91769034 AATATTTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
39 28 0.78
40 8 0.22
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (40 bp):
TTTTATAATTATTTACAATCTTTATAAAATTTTCACAATT
Found at i:91769034 original size:39 final size:38
Alignment explanation
Indices: 91768952--91769082 Score: 106
Period size: 38 Copynumber: 3.4 Consensus size: 38
91768942 TAATGGTGCA
* * * *
91768952 TTTTATAATTATTTATGATTTTTATAAAATTTTACA-ATT
1 TTTTATAATTTTTTA-AAATTTTAT-AAATTTTTCATATT
*
91768991 TTTTATAATTTTTTACAATCTTTATAAATTTTTCATAATT
1 TTTTATAATTTTTTAAAAT-TTTATAAATTTTTCAT-ATT
* * * *
91769031 TTTAATATTTTTATTAAAATTTAAT-AATTTAT-ATATTT
1 TTTTATAATTTT-TTAAAATTTTATAAATTTTTCATA-TT
91769069 TTTTATAATTTTTT
1 TTTTATAATTTTTT
91769083 TGCTACATGT
Statistics
Matches: 76, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
37 3 0.04
38 25 0.33
39 25 0.33
40 17 0.22
41 6 0.08
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (38 bp):
TTTTATAATTTTTTAAAATTTTATAAATTTTTCATATT
Found at i:91769043 original size:29 final size:30
Alignment explanation
Indices: 91768987--91769082 Score: 81
Period size: 29 Copynumber: 3.2 Consensus size: 30
91768977 AAAATTTTAC
* *
91768987 AATTTTTTATAATTTTTTACA-ATCTTTATA
1 AATTTTTAATAA-TTTTTACATATTTTTATA
*
91769017 AATTTTTCATAATTTTTA-ATATTTTTATTA
1 AATTTTTAATAATTTTTACATATTTTTA-TA
* * * *
91769047 AA-ATTTAATAATTTATATATTTTTTTATA
1 AATTTTTAATAATTTTTACATATTTTTATA
*
91769076 ATTTTTT
1 AATTTTT
91769083 TGCTACATGT
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
28 1 0.02
29 27 0.50
30 26 0.48
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (30 bp):
AATTTTTAATAATTTTTACATATTTTTATA
Found at i:91769080 original size:10 final size:10
Alignment explanation
Indices: 91768952--91769082 Score: 83
Period size: 10 Copynumber: 13.4 Consensus size: 10
91768942 TAATGGTGCA
91768952 TTTTATAATT
1 TTTTATAATT
* *
91768962 ATTTATGA-T
1 TTTTATAATT
**
91768971 TTTTATAAAA
1 TTTTATAATT
*
91768981 TTTTACAATT
1 TTTTATAATT
91768991 TTTTATAATT
1 TTTTATAATT
*
91769001 TTTTACAA-T
1 TTTTATAATT
*
91769010 CTTTATAAATT
1 TTTTAT-AATT
*
91769021 TTTCATAATT
1 TTTTATAATT
*
91769031 TTTAAT-A-T
1 TTTTATAATT
**
91769039 TTTTATTAAAA
1 TTTTA-TAATT
*
91769050 TTTAATAA-T
1 TTTTATAATT
* *
91769059 TTATATATTT
1 TTTTATAATT
91769069 TTTTATAATT
1 TTTTATAATT
91769079 TTTT
1 TTTT
91769083 TGCTACATGT
Statistics
Matches: 90, Mismatches: 24, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
8 5 0.06
9 19 0.21
10 57 0.63
11 9 0.10
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (10 bp):
TTTTATAATT
Found at i:91786110 original size:47 final size:47
Alignment explanation
Indices: 91786057--91786492 Score: 710
Period size: 47 Copynumber: 9.3 Consensus size: 47
91786047 ACAAGATATG
*
91786057 TATATGTGATAAGGCCGAATGGCCAATGTGATGAAGGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
91786104 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
91786151 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
91786198 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
91786245 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
91786292 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
91786339 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
91786386 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
91786433 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
91786480 TAAATGTGATAAG
1 TATATGTGATAAG
91786493 TCCCGAAGGA
Statistics
Matches: 358, Mismatches: 31, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 358 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:91793136 original size:18 final size:17
Alignment explanation
Indices: 91793096--91793138 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
91793086 TAATAAATTG
91793096 AAAAATTAAATATTAGA
1 AAAAATTAAATATTAGA
91793113 ATAAAATTAAA-ATTTAAGA
1 A-AAAATTAAATA-TT-AGA
91793132 AAAAATT
1 AAAAATT
91793139 TGATCTTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 2 0.09
18 17 0.74
19 4 0.17
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (17 bp):
AAAAATTAAATATTAGA
Found at i:91797663 original size:9 final size:9
Alignment explanation
Indices: 91797649--91797678 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
91797639 TACTTGCGCC
91797649 TAAGTCACA
1 TAAGTCACA
91797658 TAAGTCACA
1 TAAGTCACA
91797667 TAAGTCACA
1 TAAGTCACA
91797676 TAA
1 TAA
91797679 TGCCTTACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.47, C:0.20, G:0.10, T:0.23
Consensus pattern (9 bp):
TAAGTCACA
Found at i:91809315 original size:99 final size:100
Alignment explanation
Indices: 91809212--91809419 Score: 321
Period size: 99 Copynumber: 2.1 Consensus size: 100
91809202 CAAAATTCTC
91809212 TTTACAAAAGTTGTTTATCTAACAAAAAACTTTCATTTTCTATCAT-AAA-TCATAATTCAAGCA
1 TTTACAAAAGTTGTTTATCTAACAAAAAACTTTCATTTTCTATCATAAAACTCATAATTCAAGCA
91809275 TACTCATCCATGGAAAAACCCTAATACATTAACGGT
66 TA-TCATCCATGGAAAAACCCTAATACATTAACGGT
* * * *
91809311 TTTACAAAGGTTGTTTATCTAATAACAACCTTTCATTTTCTATCATAAAACTTCATAATTCAAGC
1 TTTACAAAAGTTGTTTATCTAACAAAAAACTTTCATTTTCTATCATAAAAC-TCATAATTCAAGC
* * *
91809376 ATATCATCCATGGAAAAATCCTAATACTTTAATGGT
65 ATATCATCCATGGAAAAACCCTAATACATTAACGGT
91809412 TTTACAAA
1 TTTACAAA
91809420 TTCATCCCCG
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
99 42 0.42
100 3 0.03
101 38 0.38
102 16 0.16
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.36
Consensus pattern (100 bp):
TTTACAAAAGTTGTTTATCTAACAAAAAACTTTCATTTTCTATCATAAAACTCATAATTCAAGCA
TATCATCCATGGAAAAACCCTAATACATTAACGGT
Found at i:91814146 original size:19 final size:20
Alignment explanation
Indices: 91814118--91814159 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 20
91814108 TCTTGCTTTG
91814118 TTTCTTTATTTA-TTT-TAT
1 TTTCTTTATTTACTTTATAT
91814136 TTTCTTTTATTTACTTTATAT
1 TTTC-TTTATTTACTTTATAT
91814157 TTT
1 TTT
91814160 AATTATAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 4 0.19
19 8 0.38
20 3 0.14
21 6 0.29
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTCTTTATTTACTTTATAT
Found at i:91815707 original size:18 final size:18
Alignment explanation
Indices: 91815689--91815723 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
91815679 TTAGACATAT
91815689 TTATAA-AATTATTATTA
1 TTATAATAATTATTATTA
91815706 TTATAATAATTATTATTA
1 TTATAATAATTATTATTA
91815724 GATAGGAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TTATAATAATTATTATTA
Found at i:91816723 original size:13 final size:13
Alignment explanation
Indices: 91816705--91816734 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
91816695 TCTCTGGCAA
*
91816705 TTCTTTTCTCTTC
1 TTCTTTTCTCCTC
91816718 TTCTTTTCTCCTC
1 TTCTTTTCTCCTC
91816731 TTCT
1 TTCT
91816735 CATCTATTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (13 bp):
TTCTTTTCTCCTC
Found at i:91817541 original size:8 final size:8
Alignment explanation
Indices: 91817528--91817567 Score: 62
Period size: 8 Copynumber: 5.0 Consensus size: 8
91817518 CTAGATCGGC
91817528 AAAAGCCG
1 AAAAGCCG
*
91817536 AAAAGCTG
1 AAAAGCCG
91817544 AAAAGCCG
1 AAAAGCCG
*
91817552 AAAAGCCA
1 AAAAGCCG
91817560 AAAAGCCG
1 AAAAGCCG
91817568 GCATTTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.53, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:91819473 original size:34 final size:35
Alignment explanation
Indices: 91819422--91819493 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
91819412 ATTCTGTAGT
*
91819422 TAGGGTAATACTGAAACTGTAGAA-ACTGAGACAG
1 TAGGGTAAAACTGAAACTGTAGAAGACTGAGACAG
* *
91819456 TAGGG-AAAACTGAAAACTTTAGAAGACTGAGACTG
1 TAGGGTAAAACTG-AAACTGTAGAAGACTGAGACAG
91819491 TAG
1 TAG
91819494 CTAGGATACG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 6 0.18
34 15 0.45
35 12 0.36
ACGTcount: A:0.42, C:0.11, G:0.26, T:0.21
Consensus pattern (35 bp):
TAGGGTAAAACTGAAACTGTAGAAGACTGAGACAG
Found at i:91830250 original size:44 final size:44
Alignment explanation
Indices: 91830191--91830288 Score: 160
Period size: 44 Copynumber: 2.2 Consensus size: 44
91830181 TTGATATCTC
* *
91830191 AAAGTCCATGGTTGTACCAAGGAAATTAAGGAAGAATTGACGAA
1 AAAGTCCATGATTGTACCAAGGAAACTAAGGAAGAATTGACGAA
* *
91830235 AAAGTCCATGATTGTACCATGGAAACTAAGGAAGAATTGACGGA
1 AAAGTCCATGATTGTACCAAGGAAACTAAGGAAGAATTGACGAA
91830279 AAAGTCCATG
1 AAAGTCCATG
91830289 TTCATAACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.20
Consensus pattern (44 bp):
AAAGTCCATGATTGTACCAAGGAAACTAAGGAAGAATTGACGAA
Found at i:91830300 original size:44 final size:44
Alignment explanation
Indices: 91830191--91830321 Score: 147
Period size: 44 Copynumber: 3.0 Consensus size: 44
91830181 TTGATATCTC
* * * * *
91830191 AAAGTCCATGGTTGTACCAAGGAAATTAAGGAAGAATTGACGAA
1 AAAGTCCATGATTATAACATGGAAATTAAGGAAGAATTGACGGA
* * *
91830235 AAAGTCCATGATTGTACCATGGAAACTAAGGAAGAATTGACGGA
1 AAAGTCCATGATTATAACATGGAAATTAAGGAAGAATTGACGGA
* * *
91830279 AAAGTCCATG-TTCATAACATGGCATTTAAGGAGGAATTGACGG
1 AAAGTCCATGATT-ATAACATGGAAATTAAGGAAGAATTGACGG
91830322 TTAAGGATAC
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
43 2 0.03
44 74 0.97
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.22
Consensus pattern (44 bp):
AAAGTCCATGATTATAACATGGAAATTAAGGAAGAATTGACGGA
Found at i:91830640 original size:55 final size:54
Alignment explanation
Indices: 91830511--91830707 Score: 245
Period size: 54 Copynumber: 3.6 Consensus size: 54
91830501 TTGGTAAGAT
* * *
91830511 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
91830565 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGTA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-C
* * * *
91830621 AAGG-TCCCATGTAAAACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
91830673 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
91830708 ATGGTAAGTT
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 31 0.25
54 42 0.34
55 41 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:91841405 original size:14 final size:14
Alignment explanation
Indices: 91841386--91841415 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91841376 GTCCTTTCAT
*
91841386 TCCCTCATTCATCA
1 TCCCTCATCCATCA
91841400 TCCCTCATCCATCA
1 TCCCTCATCCATCA
91841414 TC
1 TC
91841416 ATTCTCTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (14 bp):
TCCCTCATCCATCA
Found at i:91842246 original size:20 final size:21
Alignment explanation
Indices: 91842208--91842246 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
91842198 AGTTTATTTA
91842208 TGTTATAATTGTTGCAAATTG
1 TGTTATAATTGTTGCAAATTG
91842229 TGTT-TAATT-TTGCTAAAT
1 TGTTATAATTGTTGC-AAAT
91842247 CTATTTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.28, C:0.05, G:0.15, T:0.51
Consensus pattern (21 bp):
TGTTATAATTGTTGCAAATTG
Found at i:91849332 original size:16 final size:16
Alignment explanation
Indices: 91849308--91849378 Score: 81
Period size: 16 Copynumber: 4.4 Consensus size: 16
91849298 TGAATTACTG
*
91849308 ATTACAGCTTTATTCC
1 ATTACAGCTCTATTCC
*
91849324 ATTATAGCTCTATT-C
1 ATTACAGCTCTATTCC
*
91849339 AGTTACAGCTCTATTCA
1 A-TTACAGCTCTATTCC
* *
91849356 ATTACAGCCCTATTCT
1 ATTACAGCTCTATTCC
91849372 ATTACAG
1 ATTACAG
91849379 TGAACCAAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
15 2 0.04
16 44 0.94
17 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.39
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:91849354 original size:32 final size:32
Alignment explanation
Indices: 91849308--91849378 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
91849298 TGAATTACTG
* * * *
91849308 ATTACAGCTTTATTCCATTATAGCTCTATTC-
1 ATTACAGCTCTATTCAATTACAGCCCTATTCT
91849339 AGTTACAGCTCTATTCAATTACAGCCCTATTCT
1 A-TTACAGCTCTATTCAATTACAGCCCTATTCT
91849372 ATTACAG
1 ATTACAG
91849379 TGAACCAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 1 0.03
32 32 0.94
33 1 0.03
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.39
Consensus pattern (32 bp):
ATTACAGCTCTATTCAATTACAGCCCTATTCT
Found at i:91855716 original size:6 final size:6
Alignment explanation
Indices: 91855701--91855743 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
91855691 ATTAAGTCAA
* * *
91855701 TTTA-T TTTATT TTTATT TCTATT TTTATG TTTATT GTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
91855744 CTTAGACTTC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:91855725 original size:12 final size:11
Alignment explanation
Indices: 91855701--91855743 Score: 59
Period size: 12 Copynumber: 3.7 Consensus size: 11
91855691 ATTAAGTCAA
91855701 TTTATTTTATT
1 TTTATTTTATT
91855712 TTTATTTCTATT
1 TTTATTT-TATT
91855724 TTTATGTTTATT
1 TTTAT-TTTATT
*
91855736 GTTATTTT
1 TTTATTTT
91855744 CTTAGACTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 10 0.34
12 17 0.59
13 2 0.07
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:91860118 original size:30 final size:30
Alignment explanation
Indices: 91860084--91860144 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
91860074 GGACAAGCAA
91860084 ACGCTTAAGTGTGGGGATATTTCATAAACC
1 ACGCTTAAGTGTGGGGATATTTCATAAACC
* *
91860114 ACGCTTAAGTGTGGGGATATTTGATATACC
1 ACGCTTAAGTGTGGGGATATTTCATAAACC
91860144 A
1 A
91860145 TAAAAGTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (30 bp):
ACGCTTAAGTGTGGGGATATTTCATAAACC
Found at i:91864902 original size:27 final size:28
Alignment explanation
Indices: 91864857--91864912 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
91864847 ATATTGTTTG
* *
91864857 ACAAGTTTAAGTACTAAATTAGACAAAA
1 ACAAGTTTAAGTACTAAATAAGAAAAAA
91864885 ACAAG-TTAAGTA-TGAAATAAGAAAAAA
1 ACAAGTTTAAGTACT-AAATAAGAAAAAA
91864912 A
1 A
91864913 AACTAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 1 0.04
27 19 0.76
28 5 0.20
ACGTcount: A:0.59, C:0.07, G:0.12, T:0.21
Consensus pattern (28 bp):
ACAAGTTTAAGTACTAAATAAGAAAAAA
Found at i:91883453 original size:48 final size:47
Alignment explanation
Indices: 91883334--91883551 Score: 221
Period size: 46 Copynumber: 4.6 Consensus size: 47
91883324 TATGTGTGCT
* * *
91883334 AGTGTAAGACATGTCTGGGACATGCATC-GGC-C-ACATTATGAGAGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGGCTCGAGA-TAT-AAAGCC
*
91883380 AATGTAAGACATGTCTGGGACATGCATCGGGCTCGAGATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGGCTCGAGATATA-AAGCC
* * ** * *
91883428 AGTGTAAGACATGTCTGGGACATGCAT-TGGCATTGAGA-CGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGGC-TCGAGATATAAAGCC
* *
91883474 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGGCTCGAGATATA-AAGCC
* *
91883522 AATGTAAGACCTGTCTGGGACATGGCATCG
1 AGTGTAAGACATGTCTGGGACAT-GCATCG
91883552 ACTTTGATGT
Statistics
Matches: 142, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
46 62 0.44
47 11 0.08
48 62 0.44
49 7 0.05
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGGCTCGAGATATAAAGCC
Found at i:91883483 original size:94 final size:92
Alignment explanation
Indices: 91883334--91883551 Score: 305
Period size: 94 Copynumber: 2.3 Consensus size: 92
91883324 TATGTGTGCT
91883334 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGGCAATGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTATGAGAGGCAATGTAAGACATGTCTGGG
* *
91883399 ACATGCATCGGGCTCGAGATATACAAGCC
64 ACATGCATCAGCCTCGAGATATACAAGCC
* *
91883428 AGTGTAAGACATGTCTGGGACATGCATTGG-CATTGA-GACGAGAGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATT-ATGA-GAG-GC-AATGTAAGACATGTCTG
91883491 GGACATGCATCAGCCTCGAGATATACAAGCC
62 GGACATGCATCAGCCTCGAGATATACAAGCC
* *
91883522 AATGTAAGACCTGTCTGGGACATGGCATCG
1 AGTGTAAGACATGTCTGGGACAT-GCATCG
91883552 ACTTTGATGT
Statistics
Matches: 112, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
91 6 0.05
92 4 0.04
93 2 0.02
94 95 0.85
95 5 0.04
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCATTATGAGAGGCAATGTAAGACATGTCTGGGAC
ATGCATCAGCCTCGAGATATACAAGCC
Found at i:91891401 original size:3 final size:3
Alignment explanation
Indices: 91891393--91891432 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
91891383 TTATAAAATA
91891393 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT TA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
91891433 AGATTAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 4 0.11
3 31 0.89
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:91891438 original size:29 final size:28
Alignment explanation
Indices: 91891391--91891463 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 28
91891381 AATTATAAAA
*
91891391 TATATTATTATTATTATTATT--ATT-AT
1 TATATTATTA-TATTATGATTAAATTGAT
*
91891417 TATTTTATTATATTATAGATTAAATTGAT
1 TATATTATTATATTAT-GATTAAATTGAT
*
91891446 TATATCATTATATTATGA
1 TATATTATTATATTATGA
91891464 AATAAATTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
25 6 0.15
26 12 0.31
28 5 0.13
29 16 0.41
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (28 bp):
TATATTATTATATTATGATTAAATTGAT
Found at i:91891882 original size:21 final size:20
Alignment explanation
Indices: 91891845--91891886 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
91891835 ATTTATTTAC
91891845 TTATTATTTAAGAAATAATAA
1 TTATTATTTAAGAAAT-ATAA
*
91891866 TTATTA-TTAAGTTAATATAA
1 TTATTATTTAAG-AAATATAA
91891886 T
1 T
91891887 AATATAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (20 bp):
TTATTATTTAAGAAATATAA
Found at i:91893051 original size:19 final size:20
Alignment explanation
Indices: 91893027--91893074 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 20
91893017 GATCAGTTGG
91893027 ACCTTT-GATTAATTAACAT
1 ACCTTTGGATTAATTAACAT
91893046 ACCTTTTTTGGATTAATTAACAT
1 ACC---TTTGGATTAATTAACAT
91893069 ACCTTT
1 ACCTTT
91893075 TTTTGACTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
19 3 0.12
20 3 0.12
22 3 0.12
23 16 0.64
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (20 bp):
ACCTTTGGATTAATTAACAT
Found at i:91893059 original size:23 final size:23
Alignment explanation
Indices: 91893033--91893077 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
91893023 TTGGACCTTT
91893033 GATTAATTAACATACCTTTTTTG
1 GATTAATTAACATACCTTTTTTG
91893056 GATTAATTAACATACCTTTTTT
1 GATTAATTAACATACCTTTTTT
91893078 TGACTGACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.31, C:0.13, G:0.07, T:0.49
Consensus pattern (23 bp):
GATTAATTAACATACCTTTTTTG
Found at i:91893580 original size:18 final size:18
Alignment explanation
Indices: 91893523--91893580 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
91893513 ATTACTGGAC
91893523 TGAATAACTGATTGTTAT
1 TGAATAACTGATTGTTAT
* * *
91893541 TG-AT---TGTTTGATAC
1 TGAATAACTGATTGTTAT
*
91893555 TCAATAACTGATTGTTAT
1 TGAATAACTGATTGTTAT
91893573 TGAATAAC
1 TGAATAAC
91893581 AATAAATAAA
Statistics
Matches: 28, Mismatches: 8, Indels: 8
0.64 0.18 0.18
Matches are distributed among these distances:
14 8 0.29
15 2 0.07
17 2 0.07
18 16 0.57
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.43
Consensus pattern (18 bp):
TGAATAACTGATTGTTAT
Found at i:91898911 original size:44 final size:44
Alignment explanation
Indices: 91898767--91898974 Score: 205
Period size: 44 Copynumber: 4.8 Consensus size: 44
91898757 TTTTATCAAA
* * *
91898767 TCACCGGCATT-TAGCCTACTAGGTTTTAAA-CCCGAAT-TCATC
1 TCACCGGCATTATAGCCTGCTAGG-CTCAAAGCCCGAATATCATC
* * *
91898809 -CACCGGCATT-TCGCCTGCTAGGCTCGAAGCCCG-ATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATATCATC
* * * **
91898850 TCACCGACATTATAGCCTTCTAGGCTCGAAGCCCGAATAGGATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATATCATC
* *
91898894 TCACCGGCATTATAGCCTGTTAGGCTCAAAGGCCCG-ATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAATATCATC
* *
91898938 TCACCAGAATTATAGCCTGCTAGGCTCAAAGGCCCGA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGA
91898975 TTAGTACCGT
Statistics
Matches: 137, Mismatches: 22, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
40 5 0.04
41 28 0.20
42 9 0.07
43 21 0.15
44 69 0.50
45 5 0.04
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATATCATC
Found at i:91898942 original size:88 final size:87
Alignment explanation
Indices: 91898809--91898974 Score: 246
Period size: 88 Copynumber: 1.9 Consensus size: 87
91898799 CGAATTCATC
* * *
91898809 CACCGGCATTTCGCCTGCTAGGCTCGAAGCCCGATATCATTTCACC-GACATTATAGCCTTCTAG
1 CACCGGCATTTAGCCTGCTAGGCTCAAAGCCCGATATCATTTCACCAGA-ATTATAGCCTGCTAG
*
91898873 GCTCGAA-GCCCGAATAGGATCT
65 GCTCAAAGGCCCGAATAGGATCT
*
91898895 CACCGGCATTATAGCCTGTTAGGCTCAAAGGCCCGATATCATTTCACCAGAATTATAGCCTGCTA
1 CACCGGCATT-TAGCCTGCTAGGCTCAAA-GCCCGATATCATTTCACCAGAATTATAGCCTGCTA
91898960 GGCTCAAAGGCCCGA
64 GGCTCAAAGGCCCGA
91898975 TTAGTACCGT
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
86 10 0.14
87 15 0.21
88 38 0.54
89 8 0.11
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.23
Consensus pattern (87 bp):
CACCGGCATTTAGCCTGCTAGGCTCAAAGCCCGATATCATTTCACCAGAATTATAGCCTGCTAGG
CTCAAAGGCCCGAATAGGATCT
Found at i:91901082 original size:29 final size:29
Alignment explanation
Indices: 91901040--91901140 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
91901030 CATGAAATTG
91901040 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
91901069 GCACTAAGTGTGCGGGTTCAAGTTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
* * *
91901098 GCACTAAGTGTGCGAGTTC-GATTATATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
91901126 ACACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
91901141 ACTTACTATA
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 19 0.29
29 46 0.71
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTCAAATTGTATA
Found at i:91908866 original size:29 final size:29
Alignment explanation
Indices: 91908824--91908925 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
91908814 CATGAAATTG
91908824 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
91908853 GCACTAAGTGTGCGGGTTCAAGTTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
* * *
91908882 GCACTAAGTGTGCGAGTTC-GATTATATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
* *
91908910 ACACTAAGTCTGCGGG
1 GCACTAAGTGTGCGGG
91908926 CTTACTATAT
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 19 0.29
29 46 0.71
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTCAAATTGTATA
Found at i:91911646 original size:85 final size:85
Alignment explanation
Indices: 91911503--91911673 Score: 342
Period size: 85 Copynumber: 2.0 Consensus size: 85
91911493 GGCCGGCCAT
91911503 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
91911568 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
91911588 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
91911653 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
91911673 G
1 G
91911674 GGCACGGGCA
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.39, C:0.08, G:0.26, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:91913002 original size:47 final size:47
Alignment explanation
Indices: 91912947--91913351 Score: 634
Period size: 47 Copynumber: 8.6 Consensus size: 47
91912937 TATTTGAATA
* * *
91912947 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
91912994 GATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
91913041 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
91913088 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
91913135 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
91913184 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
91913231 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
91913278 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
91913325 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
91913352 TCCCGAAGGG
Statistics
Matches: 338, Mismatches: 16, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 291 0.86
49 45 0.13
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:91913268 original size:190 final size:190
Alignment explanation
Indices: 91912947--91913351 Score: 633
Period size: 190 Copynumber: 2.2 Consensus size: 190
91912937 TATTTGAATA
* * *
91912947 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGGATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATA
* * * * *
91913010 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCGAAT
91913075 GGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
131 GGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
91913135 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAA-AGTGTAT
*
91913199 ATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGA
65 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGCATATATGAGATAAGGCCGA
91913263 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
129 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
91913325 GATGTGGAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
91913352 TCCCGAAGGG
Statistics
Matches: 200, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
188 22 0.11
189 1 0.00
190 175 0.88
191 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (190 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCGAAT
GGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:91917839 original size:38 final size:38
Alignment explanation
Indices: 91917788--91917864 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
91917778 TAAAACTAGG
91917788 TCCCTATACATGCCACTCACTTGATATTTCTAACTTTA
1 TCCCTATACATGCCACTCACTTGATATTTCTAACTTTA
*
91917826 TCCCTATACATGCCACTCACTTGATGTTTCTAACTTTA
1 TCCCTATACATGCCACTCACTTGATATTTCTAACTTTA
91917864 T
1 T
91917865 AAATACTCCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.25, C:0.29, G:0.06, T:0.40
Consensus pattern (38 bp):
TCCCTATACATGCCACTCACTTGATATTTCTAACTTTA
Found at i:91918948 original size:50 final size:50
Alignment explanation
Indices: 91918866--91919206 Score: 349
Period size: 50 Copynumber: 6.8 Consensus size: 50
91918856 CGAAGCTCTT
* * * * * *
91918866 TGGTACGCATTGTAGCTTGCACTTAGTGCTACACATGCGACCTAATAATC
1 TGGTACGCGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATC
* ** *
91918916 TAGTACGCGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATC
1 TGGTACGCGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATC
* * ** * * *
91918966 TGATACACGTAGTAGCCTGCACTTAGTACTACACACATGATCGAAGCTATC
1 TGGTACGCGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAATC
* * *
91919017 GGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAAAC
1 TGGTACGCGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATC
* * * ** * * *
91919067 TGGTACACGTAGTAGCCTGTACTTAATACTACACACATGATCGAAGCTATC
1 TGGTACGCGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAATC
* * * * *
91919118 GGGTATGCATAGTAGCCCGCACTTAGTACTACACATGCGACCTAACAATC
1 TGGTACGCGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATC
* *
91919168 TGGTACACGTAGTAGCCTGTACTTAGTACTACACATGTG
1 TGGTACGCGTAGTAGCCTGCACTTAGTACTACACATGTG
91919207 TTCTCACAAT
Statistics
Matches: 232, Mismatches: 57, Indels: 4
0.79 0.19 0.01
Matches are distributed among these distances:
50 155 0.67
51 77 0.33
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (50 bp):
TGGTACGCGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATC
Found at i:91919051 original size:101 final size:101
Alignment explanation
Indices: 91918918--91919202 Score: 471
Period size: 101 Copynumber: 2.8 Consensus size: 101
91918908 TAATAATCTA
* ** * *
91918918 GTACGCGTAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGCC
*
91918983 TGCACTTAGTACTACACACATGATCGAAGCTATCGG
66 TGTACTTAGTACTACACACATGATCGAAGCTATCGG
*
91919019 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAAACTGGTACACGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGCC
*
91919084 TGTACTTAATACTACACACATGATCGAAGCTATCGG
66 TGTACTTAGTACTACACACATGATCGAAGCTATCGG
* * *
91919120 GTATGCATAGTAGCCCGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGCC
91919185 TGTACTTAGTACTACACA
66 TGTACTTAGTACTACACA
91919203 TGTGTTCTCA
Statistics
Matches: 171, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 171 1.00
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.25
Consensus pattern (101 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACGTAGTAGCC
TGTACTTAGTACTACACACATGATCGAAGCTATCGG
Found at i:91919103 original size:151 final size:151
Alignment explanation
Indices: 91918867--91919206 Score: 403
Period size: 151 Copynumber: 2.3 Consensus size: 151
91918857 GAAGCTCTTT
* * * * * * *
91918867 GGTACGCATTGTAGCTTGCACTTAGTGCTACACATGCGACCTAATAATCTAGTACGCGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAAACTAGTACACGTAGTAGC
* * * * *
91918932 CTGCACTTAGTACTACACACATGACCTAA-CCATCTGATACACGTAGTAGCCTGCACTTAGTACT
66 CTGCACTTAATACTACACACATGACCGAAGCCATCGGATACACATAGTAGCCCGCACTTAGTACT
* * *
91918996 ACACACATGATCGAAGCTATCG
131 ACACACACGACCGAA-CAATCG
*
91919018 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAAACTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAAACTAGTACACGTAGTAGC
* * * * **
91919083 CTGTACTTAATACTACACACATGATCGAAGCTATCGGGTATGCATAGTAGCCCGCACTTAGTACT
66 CTGCACTTAATACTACACACATGACCGAAGCCATCGGATACACATAGTAGCCCGCACTTAGTACT
** * *
91919148 ACACATGCGACCTAACAATCT
131 ACACACACGACCGAACAATCG
* * *
91919169 GGTACACGTAGTAGCCTGTACTTAGTACTACACATGTG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTG
91919207 TTCTCACAAT
Statistics
Matches: 159, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
151 121 0.76
152 38 0.24
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAAACTAGTACACGTAGTAGC
CTGCACTTAATACTACACACATGACCGAAGCCATCGGATACACATAGTAGCCCGCACTTAGTACT
ACACACACGACCGAACAATCG
Found at i:91921224 original size:27 final size:27
Alignment explanation
Indices: 91921183--91921284 Score: 141
Period size: 27 Copynumber: 3.8 Consensus size: 27
91921173 AACACGCTAG
91921183 GAAAGGAATGCCTTTGTGGCAATATAT
1 GAAAGGAATGCCTTTGTGGCAATATAT
* * *
91921210 GAAAGGAATGACTTTATGACAATATAT
1 GAAAGGAATGCCTTTGTGGCAATATAT
* *
91921237 GGAAGGAATGCCTTTGTGGCAATATAC
1 GAAAGGAATGCCTTTGTGGCAATATAT
* *
91921264 GAAATGAATGCCTTCGTGGCA
1 GAAAGGAATGCCTTTGTGGCA
91921285 GACTCTGAAG
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.27
Consensus pattern (27 bp):
GAAAGGAATGCCTTTGTGGCAATATAT
Found at i:91928682 original size:41 final size:42
Alignment explanation
Indices: 91928604--91928682 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
91928594 AATACTCGAT
*
91928604 ATCTCATACACTAAGTGCCAATACATAGTTGAAGCTATTATA
1 ATCTCATACACTAAGTGCCAATACATAGCTGAAGCTATTATA
*
91928646 ATCTCATACACTAAGTGCC-TTACATAGCTGAAGCTAT
1 ATCTCATACACTAAGTGCCAATACATAGCTGAAGCTAT
91928683 CTCGATCTCG
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
41 16 0.46
42 19 0.54
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (42 bp):
ATCTCATACACTAAGTGCCAATACATAGCTGAAGCTATTATA
Found at i:91928691 original size:41 final size:42
Alignment explanation
Indices: 91928604--91928761 Score: 132
Period size: 41 Copynumber: 3.9 Consensus size: 42
91928594 AATACTCGAT
* *
91928604 ATCTCATACACTAAGTGCCAATACATAGTTGAAGCTATTATA
1 ATCTCATACACTAAGTGCCAATACATAGCTGAAGCTATTACA
* *
91928646 ATCTCATACACTAAGTGCC-TTACATAGCTGAAGCTATCT-CG
1 ATCTCATACACTAAGTGCCAATACATAGCTGAAGCTAT-TACA
** ** *
91928687 ATCTCGCACACTAAGTGCC-ATGTATAG-TCGAAGCTATTCCGA
1 ATCTCATACACTAAGTGCCAATACATAGCT-GAAGCTATTAC-A
* * *
91928729 ATCGC--ACACTAAGTGCCAA-ATATAGCGGAAGCT
1 ATCTCATACACTAAGTGCCAATACATAGCTGAAGCT
91928762 TTCTTGAATC
Statistics
Matches: 97, Mismatches: 13, Indels: 14
0.78 0.10 0.11
Matches are distributed among these distances:
40 25 0.26
41 48 0.49
42 24 0.25
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (42 bp):
ATCTCATACACTAAGTGCCAATACATAGCTGAAGCTATTACA
Found at i:91928745 original size:40 final size:40
Alignment explanation
Indices: 91928653--91928792 Score: 167
Period size: 40 Copynumber: 3.5 Consensus size: 40
91928643 ATAATCTCAT
* * * * *
91928653 ACACTAAGTGCCTTACATAGCTGAAGCTATCTCGATCTCGC
1 ACACTAAGTGCCATATATAGCGGAAGCTTTCTCGA-ATCGC
*
91928694 ACACTAAGTGCCATGTATAGTC-GAAGCTATTC-CGAATCGC
1 ACACTAAGTGCCATATATAG-CGGAAGCT-TTCTCGAATCGC
* *
91928734 ACACTAAGTGCCAAATATAGCGGAAGCTTTCTTGAATCGC
1 ACACTAAGTGCCATATATAGCGGAAGCTTTCTCGAATCGC
91928774 ACACTAAGTGCCATATATA
1 ACACTAAGTGCCATATATA
91928793 TATCCGAATA
Statistics
Matches: 86, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
39 4 0.05
40 53 0.62
41 26 0.30
42 3 0.03
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (40 bp):
ACACTAAGTGCCATATATAGCGGAAGCTTTCTCGAATCGC
Found at i:91932539 original size:40 final size:40
Alignment explanation
Indices: 91932502--91932684 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
91932492 GCTACTCGTT
*
91932502 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
91932542 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
91932582 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
91932621 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
91932662 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
91932685 AACATCATTC
Statistics
Matches: 123, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 76 0.62
41 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:91932613 original size:79 final size:81
Alignment explanation
Indices: 91932502--91932684 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
91932492 GCTACTCGTT
* *
91932502 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
91932566 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
91932582 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
91932645 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
91932662 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
91932685 AACATCATTC
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 4 0.04
79 55 0.61
80 31 0.34
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:91937954 original size:43 final size:43
Alignment explanation
Indices: 91937905--91938026 Score: 165
Period size: 43 Copynumber: 2.8 Consensus size: 43
91937895 AATTACCGAG
* *
91937905 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-T
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
* *
91937947 ATTGTGATTACGTGTAAGACCATGTCTGAGACATGGGCATCGTT
1 A-TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
* * *
91937991 ATATGATTTCGTGTAAGACCATGTTTGGGACATTGG
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGG
91938027 TATCCATATG
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 1 0.01
43 66 0.96
44 2 0.03
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
Found at i:91939877 original size:162 final size:162
Alignment explanation
Indices: 91939610--91939932 Score: 601
Period size: 162 Copynumber: 2.0 Consensus size: 162
91939600 GAATGAGGTG
** *
91939610 TATAATCTGGTAATGCCTCGTAACTCTATTCCAGCGTCAGATACGGGTTAGGGGTGTTACATCTT
1 TATAATCCAGTAATGCCTCGTAACTCTATTCCAGCATCAGATACGGGTTAGGGGTGTTACATCTT
*
91939675 TCACGTTGCCAACACTAGATACCGATGTATCTTGAGCTTTAGGAATGGTGTATTGCTTTCCACGA
66 TCACGTTGCCAACACTAGATACCGATGTATCATGAGCTTTAGGAATGGTGTATTGCTTTCCACGA
91939740 TCTCTATTCGAATATCCCGTTGAAGTGATCTC
131 TCTCTATTCGAATATCCCGTTGAAGTGATCTC
91939772 TATAATCCAGTAATGCCTCGTAACTCTATTCCAGCATCAGATACGGGTTAGGGGTGTTACATCTT
1 TATAATCCAGTAATGCCTCGTAACTCTATTCCAGCATCAGATACGGGTTAGGGGTGTTACATCTT
*
91939837 TCACGTTGCCAACACTAGATACCGATGTTTCATGAGCTTTAGGAATGGTGTATTGCTTTCCACGA
66 TCACGTTGCCAACACTAGATACCGATGTATCATGAGCTTTAGGAATGGTGTATTGCTTTCCACGA
91939902 TCTCTATTCGAATATCCCGTTGAAGTGATCT
131 TCTCTATTCGAATATCCCGTTGAAGTGATCT
91939933 GCCGGTTAAA
Statistics
Matches: 156, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
162 156 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (162 bp):
TATAATCCAGTAATGCCTCGTAACTCTATTCCAGCATCAGATACGGGTTAGGGGTGTTACATCTT
TCACGTTGCCAACACTAGATACCGATGTATCATGAGCTTTAGGAATGGTGTATTGCTTTCCACGA
TCTCTATTCGAATATCCCGTTGAAGTGATCTC
Found at i:91944109 original size:24 final size:25
Alignment explanation
Indices: 91944061--91944109 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
91944051 AGACCTGATT
*
91944061 AAATAATAACATTTTTATTACAAAA
1 AAATAATAACATTTTTAATACAAAA
*
91944086 AAATAATAACA-TTTTAATAGAAAA
1 AAATAATAACATTTTTAATACAAAA
91944110 TACAACTCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (25 bp):
AAATAATAACATTTTTAATACAAAA
Found at i:91952012 original size:10 final size:11
Alignment explanation
Indices: 91951983--91952015 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
91951973 CATGATTATG
91951983 CAATGATTCGA
1 CAATGATTCGA
*
91951994 CAGTGATTCGA
1 CAATGATTCGA
91952005 -AATGATTCGA
1 CAATGATTCGA
91952015 C
1 C
91952016 TTGATTTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (11 bp):
CAATGATTCGA
Found at i:91952152 original size:50 final size:48
Alignment explanation
Indices: 91952089--91952261 Score: 167
Period size: 48 Copynumber: 3.6 Consensus size: 48
91952079 GGGTATTAAG
* * * *
91952089 TTGGCTTCGGGCCATGATATCGGTACTTCTGG-TGCGAGTTATACCTTGAT
1 TTGGCTACGGGCCATGGTATAGGTACTTCTGGAAG-GAG-T-TACCTTGAT
* *
91952139 TTGGCTACAGGCCATGGTATAGGTA-TTTTGGAAAGGAGTTACCTTGAT
1 TTGGCTACGGGCCATGGTATAGGTACTTCTGG-AAGGAGTTACCTTGAT
* * *
91952187 TTGGCTATGGGCCATGGTATAGGTAC-TCCGAGATA--AGTTACGTTGAT
1 TTGGCTACGGGCCATGGTATAGGTACTTCTG-GA-AGGAGTTACCTTGAT
*
91952234 TTGGCTACGTGCCATGGTATAGGTACTT
1 TTGGCTACGGGCCATGGTATAGGTACTT
91952262 ATCGATTGAG
Statistics
Matches: 104, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
47 35 0.34
48 36 0.35
49 8 0.08
50 24 0.23
51 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (48 bp):
TTGGCTACGGGCCATGGTATAGGTACTTCTGGAAGGAGTTACCTTGAT
Found at i:91952200 original size:48 final size:47
Alignment explanation
Indices: 91952130--91952260 Score: 165
Period size: 47 Copynumber: 2.8 Consensus size: 47
91952120 GTGCGAGTTA
* * **
91952130 TACCTTGATTTGGCTACAGGCCATGGTATAGGTATTTTG-GAAAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGAGAAA--AGT
* *
91952178 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGAGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGAGAAAAGT
* *
91952225 TACGTTGATTTGGCTACGTGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
91952261 TATCGATTGA
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
47 36 0.49
48 34 0.47
49 3 0.04
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGAGAAAAGT
Found at i:91959610 original size:42 final size:44
Alignment explanation
Indices: 91959564--91959658 Score: 106
Period size: 44 Copynumber: 2.2 Consensus size: 44
91959554 TACATGTAAT
* *
91959564 CATATATCGAAGTAAC-TATTC-A-GACAGGGTCTTACTCGCACA
1 CATATATCGAAATAACATA-TCGATGACAGGGTCTTACTCACACA
* * * *
91959606 CATATATCAAAATCACATATCGATGCCATGGTCTTACTCACACA
1 CATATATCGAAATAACATATCGATGACAGGGTCTTACTCACACA
91959650 CATATATCG
1 CATATATCG
91959659 GAATCCTATG
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
42 15 0.35
43 3 0.07
44 25 0.58
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (44 bp):
CATATATCGAAATAACATATCGATGACAGGGTCTTACTCACACA
Found at i:91962815 original size:15 final size:16
Alignment explanation
Indices: 91962786--91962815 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
91962776 GTTTTGTGTT
91962786 TTCTTTATGTTTTCTA
1 TTCTTTATGTTTTCTA
91962802 TTCTTTAT-TTTTCT
1 TTCTTTATGTTTTCT
91962816 GAGATGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.10, C:0.13, G:0.03, T:0.73
Consensus pattern (16 bp):
TTCTTTATGTTTTCTA
Found at i:91972301 original size:19 final size:19
Alignment explanation
Indices: 91972277--91972315 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
91972267 AAATTTTTTT
91972277 TTCTTATTGTCAGCTCCAA
1 TTCTTATTGTCAGCTCCAA
91972296 TTCTTATTGTCAGCTCCAA
1 TTCTTATTGTCAGCTCCAA
91972315 T
1 T
91972316 ATTGAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.26, G:0.10, T:0.44
Consensus pattern (19 bp):
TTCTTATTGTCAGCTCCAA
Found at i:91973232 original size:24 final size:23
Alignment explanation
Indices: 91973198--91973244 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
91973188 TTTACGTTCT
91973198 GGAAAGCTAAAAGAAAAAGAAAAA
1 GGAAAGCTAAAAG-AAAAGAAAAA
*
91973222 GGAAAGTTAAAAGAAAAGAAAAA
1 GGAAAGCTAAAAGAAAAGAAAAA
91973245 TTAAAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.70, C:0.02, G:0.21, T:0.06
Consensus pattern (23 bp):
GGAAAGCTAAAAGAAAAGAAAAA
Found at i:91973239 original size:17 final size:18
Alignment explanation
Indices: 91973212--91973250 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
91973202 AGCTAAAAGA
* *
91973212 AAAAGAAAAAGGAAAGTT
1 AAAAGAAAAAGAAAAATT
91973230 AAAAG-AAAAGAAAAATT
1 AAAAGAAAAAGAAAAATT
91973247 AAAA
1 AAAA
91973251 TTATTGGGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.10
Consensus pattern (18 bp):
AAAAGAAAAAGAAAAATT
Found at i:91976430 original size:5 final size:5
Alignment explanation
Indices: 91976420--91976445 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
91976410 AGGATTGTAT
91976420 ATATA ATATA ATATA ATATA ATATA A
1 ATATA ATATA ATATA ATATA ATATA A
91976446 ACATGAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:91976602 original size:17 final size:16
Alignment explanation
Indices: 91976580--91976611 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
91976570 AATAGTTGTG
91976580 ATAATTATACATTTAAA
1 ATAATTATA-ATTTAAA
91976597 ATAATTATAATTTAA
1 ATAATTATAATTTAA
91976612 TAGAAGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (16 bp):
ATAATTATAATTTAAA
Found at i:91976643 original size:44 final size:43
Alignment explanation
Indices: 91976562--91976665 Score: 109
Period size: 44 Copynumber: 2.3 Consensus size: 43
91976552 TTTAAAAAGT
* * * *
91976562 TGAAATAAAATAGTTGTGATAATTATACATTTAAAATAATTATAA
1 TGAAAT-AAA-AGTTATGGTAATAATACATTTAAAATAATTAGAA
** * *
91976607 TTTAATAGAAGTTATGGTAATAATATATTTACAAATAATTAGAA
1 TGAAATAAAAGTTATGGTAATAATACATTTA-AAATAATTAGAA
91976651 TGAAATAAAAGTTAT
1 TGAAATAAAAGTTAT
91976666 TCTAATTTTA
Statistics
Matches: 47, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
43 18 0.38
44 25 0.53
45 4 0.09
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.38
Consensus pattern (43 bp):
TGAAATAAAAGTTATGGTAATAATACATTTAAAATAATTAGAA
Found at i:91984281 original size:43 final size:43
Alignment explanation
Indices: 91984231--91984369 Score: 126
Period size: 43 Copynumber: 3.3 Consensus size: 43
91984221 TCCCGGACGT
* * *
91984231 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACACGTAATTCAATATCGATGCCTATGTCCCAGACAC
* * *
91984274 GGTCTTACACGAAATT-AGATA-CGATG-CTGATGTCCCAAACAT
1 GGTCTTACACGTAATTCA-ATATCGATGCCT-ATGTCCCAGACAC
* * *
91984316 GGTCTTATACGTAAATCTC-A-ATCGAGGCCTGTGTCCCAGACAC
1 GGTCTTACACGT-AAT-TCAATATCGATGCCTATGTCCCAGACAC
91984359 GGTCTTACACG
1 GGTCTTACACG
91984370 ATGTCTCAGA
Statistics
Matches: 77, Mismatches: 12, Indels: 14
0.75 0.12 0.14
Matches are distributed among these distances:
41 2 0.03
42 27 0.35
43 45 0.58
44 3 0.04
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGTAATTCAATATCGATGCCTATGTCCCAGACAC
Found at i:91984901 original size:27 final size:28
Alignment explanation
Indices: 91984840--91984902 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 28
91984830 TACAACATTT
91984840 TCAA-TTCACAATTTAGTCCCAAAAACA
1 TCAATTTCACAATTTAGTCCCAAAAACA
* *
91984867 TTATTTTCACAATTTAG-CCCAAATAAC-
1 TCAATTTCACAATTTAGTCCCAAA-AACA
91984894 TCAATTTCA
1 TCAATTTCA
91984903 TCAAAAACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
27 15 0.50
28 15 0.50
ACGTcount: A:0.40, C:0.24, G:0.03, T:0.33
Consensus pattern (28 bp):
TCAATTTCACAATTTAGTCCCAAAAACA
Found at i:92002476 original size:42 final size:43
Alignment explanation
Indices: 92002383--92002485 Score: 113
Period size: 42 Copynumber: 2.4 Consensus size: 43
92002373 CAACGGTGAA
* * **
92002383 GTCCCAGAC-GTGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACAG-GGTCTTACACGGAATTCAATATCGATGCCGAT
*
92002426 ATCCCAGACAGGGTCTTACACGGAA-TCAGATAT-GATGCCGAT
1 GTCCCAGACAGGGTCTTACACGGAATTCA-ATATCGATGCCGAT
*
92002468 GTCCCAGACATGGTCTTA
1 GTCCCAGACAGGGTCTTA
92002486 TACATAAATC
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
42 26 0.51
43 24 0.47
44 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACACGGAATTCAATATCGATGCCGAT
Found at i:92010817 original size:44 final size:44
Alignment explanation
Indices: 92010764--92010849 Score: 163
Period size: 44 Copynumber: 2.0 Consensus size: 44
92010754 GCATACATGA
92010764 ACCCTAGCTTAAAATATGGGTAGAAATGGAGAGAACATGTTCTT
1 ACCCTAGCTTAAAATATGGGTAGAAATGGAGAGAACATGTTCTT
*
92010808 ACCCTAGCTTAAAATATGGGTAGAATTGGAGAGAACATGTTC
1 ACCCTAGCTTAAAATATGGGTAGAAATGGAGAGAACATGTTC
92010850 CAAGGATCTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (44 bp):
ACCCTAGCTTAAAATATGGGTAGAAATGGAGAGAACATGTTCTT
Found at i:92040759 original size:20 final size:19
Alignment explanation
Indices: 92040736--92040777 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
92040726 TAAAGAAAGT
92040736 AAATAC-AATGGAAAGTAATG
1 AAATACAAAT-GAAAGTAA-G
*
92040756 AAATGCAAATGAAAGTAAG
1 AAATACAAATGAAAGTAAG
92040775 AAA
1 AAA
92040778 ATTTGAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 13 0.65
21 3 0.15
ACGTcount: A:0.60, C:0.05, G:0.19, T:0.17
Consensus pattern (19 bp):
AAATACAAATGAAAGTAAG
Found at i:92042329 original size:37 final size:37
Alignment explanation
Indices: 92042270--92042378 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
92042260 AGCTCAGACG
* * *
92042270 AAATCTCCACACGAAGTTATCGGGTCTTAACTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTAACCGGACA
*
92042307 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTAACCGGACA
* *
92042344 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTAACCGGA
92042379 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTAACCGGACA
Found at i:92042649 original size:48 final size:48
Alignment explanation
Indices: 92042525--92042709 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
92042515 GCACATCACC
*
92042525 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
92042575 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
92042623 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
92042671 TACATATTTCACATTAGCCATTCGACTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
92042710 TGCATGTTCA
Statistics
Matches: 127, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
48 83 0.65
49 2 0.02
50 42 0.33
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:92042714 original size:98 final size:97
Alignment explanation
Indices: 92042525--92042708 Score: 309
Period size: 98 Copynumber: 1.9 Consensus size: 97
92042515 GCACATCACC
*
92042525 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
*
92042590 GACCATTCGGCTTTACCACATATGCATATCTCA
65 GACCATTCGACTTTACCACATATGCATATCTCA
*
92042623 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
92042686 AGCCATTCGACTTTACCACATAT
66 A-CCATTCGACTTTACCACATAT
92042709 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.43
98 46 0.56
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCGACTTTACCACATATGCATATCTCA
Found at i:92042758 original size:47 final size:47
Alignment explanation
Indices: 92042680--92042826 Score: 204
Period size: 47 Copynumber: 3.1 Consensus size: 47
92042670 ATACATATTT
* * * * *
92042680 CACATTAGCCATTCGACTTTACCACATATATGCATGTTCATATTCAC
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
* * *
92042727 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
* *
92042774 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTGAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
92042821 CACATT
1 CACATT
92042827 AAAATCCTAA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 89 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAC
Found at i:92051420 original size:52 final size:50
Alignment explanation
Indices: 92051291--92051422 Score: 149
Period size: 50 Copynumber: 2.6 Consensus size: 50
92051281 ATGTGTTTTG
* * ** *
92051291 CATTTAATAAAGTCATGCATCATGTAACTCTTATGTTAGTTAAGTTTGTAT
1 CATTAAATTAAGTCATGCAT-ATGTAACTCCCATGTTAGTTAAGTTTGCAT
* *
92051342 CA-TAAATTATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCAT
1 CATTAAATTAAGTCATGCA-TATGTAACTCCCATGTTAGTT-AAGTTTGCAT
*
92051393 CATTAAATTAAGTCATGCGATAGGTAACTC
1 CATTAAATTAAGTCATGC-ATATGTAACTC
92051423 ATTTGTTCAT
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
50 30 0.45
51 14 0.21
52 22 0.33
53 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (50 bp):
CATTAAATTAAGTCATGCATATGTAACTCCCATGTTAGTTAAGTTTGCAT
Found at i:92053522 original size:35 final size:35
Alignment explanation
Indices: 92053474--92053678 Score: 200
Period size: 35 Copynumber: 5.9 Consensus size: 35
92053464 AGGTAAGTAT
* * *
92053474 ATGTGAGGCTATATTGAACTTGTATATTCGGCTGC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
*
92053509 ATGTGAGGTTATATTGAACTTGTGA-ATTCGATTAC
1 ATGTGAGGTTATATTGAACTTGT-ATATTCGGTTAC
*
92053544 ATGTGAGCTTATATTGAACTTGTATATTCGGTTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* ** *
92053579 ATGTGAGGTTATATTGAA-TTGGTATATTCAGCCAT
1 ATGTGAGGTTATATTGAACTT-GTATATTCGGTTAC
* * * * *
92053614 ATGAGATGTT-TATTTGAACTTGAACATTAGGTTAC
1 ATGTGAGGTTATA-TTGAACTTGTATATTCGGTTAC
* * * *
92053649 ATGTAATGATATATTGAACTTATATATTCG
1 ATGTGAGGTTATATTGAACTTGTATATTCG
92053679 ACCATATAGG
Statistics
Matches: 137, Mismatches: 27, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
34 5 0.04
35 127 0.93
36 5 0.04
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (35 bp):
ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
Found at i:92054598 original size:23 final size:23
Alignment explanation
Indices: 92054568--92054614 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
92054558 AATTGAAATC
92054568 TTTCTAATTAAAACCCCTAGTGT
1 TTTCTAATTAAAACCCCTAGTGT
*
92054591 TTTCTAATTTAAACCCCTAGTGT
1 TTTCTAATTAAAACCCCTAGTGT
92054614 T
1 T
92054615 GCATTAACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (23 bp):
TTTCTAATTAAAACCCCTAGTGT
Found at i:92069371 original size:31 final size:31
Alignment explanation
Indices: 92069329--92069391 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
92069319 TACATATTTT
92069329 GAGTTAAGCCATTGATGAATATTTGTGTTTA
1 GAGTTAAGCCATTGATGAATATTTGTGTTTA
*
92069360 GAGTTATGCCATTGATGAATATTTGTGTTTA
1 GAGTTAAGCCATTGATGAATATTTGTGTTTA
92069391 G
1 G
92069392 TGATGTTTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.43
Consensus pattern (31 bp):
GAGTTAAGCCATTGATGAATATTTGTGTTTA
Found at i:92070356 original size:35 final size:35
Alignment explanation
Indices: 92070310--92070515 Score: 174
Period size: 35 Copynumber: 5.9 Consensus size: 35
92070300 AGGTAAGTAT
* * *
92070310 ATGTGAAGTTATATTGAACTTGTATATTTGGCTGC
1 ATGTGAAGTTATATTGAACTTGTATATTCGGTTAC
* * *
92070345 ATGTGAGGTTATATTGAACTAGTGA-ATTCGATTAC
1 ATGTGAAGTTATATTGAACTTGT-ATATTCGGTTAC
*
92070380 ATGTG-AGCTTATATTGAACTTGTATATTCAGTTAC
1 ATGTGAAG-TTATATTGAACTTGTATATTCGGTTAC
*
92070415 ATGTGAAGTTATATTGAA-TTGGTATATTCGG--CC
1 ATGTGAAGTTATATTGAACTT-GTATATTCGGTTAC
* * * *
92070448 ATCTGAGATGTT-TATTTGAACTTGAACATTAGGTTAC
1 ATGTGA-A-GTTATA-TTGAACTTGTATATTCGGTTAC
* *
92070485 ATGT-AATGATATATTGAACTTATATATTCGG
1 ATGTGAA-GTTATATTGAACTTGTATATTCGG
92070516 CCATATGAAA
Statistics
Matches: 136, Mismatches: 23, Indels: 24
0.74 0.13 0.13
Matches are distributed among these distances:
33 6 0.04
34 7 0.05
35 111 0.82
36 8 0.06
37 4 0.03
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (35 bp):
ATGTGAAGTTATATTGAACTTGTATATTCGGTTAC
Found at i:92071296 original size:19 final size:19
Alignment explanation
Indices: 92071274--92071313 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
92071264 CTGGACAGGA
*
92071274 GCGTGTGCAAGGGACACGG
1 GCGTGTGCAAGGCACACGG
92071293 GCGTGTGCAAGGCACACGG
1 GCGTGTGCAAGGCACACGG
92071312 GC
1 GC
92071314 TGGACACACG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.20, C:0.25, G:0.45, T:0.10
Consensus pattern (19 bp):
GCGTGTGCAAGGCACACGG
Found at i:92071597 original size:18 final size:18
Alignment explanation
Indices: 92071574--92071614 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
92071564 GAATGCATGA
92071574 AAGTTTTAAATTGTATGC
1 AAGTTTTAAATTGTATGC
92071592 AAGTTTTAAATTGTATGC
1 AAGTTTTAAATTGTATGC
92071610 AAGTT
1 AAGTT
92071615 ATTGTTGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.44
Consensus pattern (18 bp):
AAGTTTTAAATTGTATGC
Found at i:92073552 original size:29 final size:29
Alignment explanation
Indices: 92073515--92073595 Score: 108
Period size: 29 Copynumber: 2.8 Consensus size: 29
92073505 CACCTTGACA
* *
92073515 CGAATTCTCAATGAACAAGTTCTTCATCG
1 CGAACTCTCAACGAACAAGTTCTTCATCG
* * *
92073544 CGAACTCTCAACGAACGAGTTCTTTATTG
1 CGAACTCTCAACGAACAAGTTCTTCATCG
*
92073573 CAAACTCTCAACGAACAAGTTCT
1 CGAACTCTCAACGAACAAGTTCT
92073596 CCACCTCTTC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (29 bp):
CGAACTCTCAACGAACAAGTTCTTCATCG
Found at i:92084461 original size:50 final size:48
Alignment explanation
Indices: 92084344--92084567 Score: 243
Period size: 50 Copynumber: 4.5 Consensus size: 48
92084334 TGGTACGCAA
* *
92084344 AGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCAGTACACGT
1 AGTAGCCTACACTTAGTACTACACACGCGACCAATTATCGA-TACACGT
* **
92084393 AGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACGT
1 AGTAGCCTACACTTAGTACTACACACGCGACC-AATTATC-GATACACGT
* * * * * *
92084443 AGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCAT
1 AGTAGCCTACACTTAGTACTACACACGCGA-CCAA-TTATC-GATACACGT
* * * *
92084494 AGTAGTCTGCACTTAGTAC-ACACATGCGACCAATTATCCGGTACACGT
1 AGTAGCCTACACTTAGTACTACACACGCGACCAATTAT-CGATACACGT
92084542 AGTAGCCTACACTTAGTACTACACAC
1 AGTAGCCTACACTTAGTACTACACAC
92084568 ATGAGCTCAC
Statistics
Matches: 147, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
48 28 0.19
49 39 0.27
50 51 0.35
51 29 0.20
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (48 bp):
AGTAGCCTACACTTAGTACTACACACGCGACCAATTATCGATACACGT
Found at i:92084539 original size:99 final size:99
Alignment explanation
Indices: 92084344--92084567 Score: 272
Period size: 99 Copynumber: 2.3 Consensus size: 99
92084334 TGGTACGCAA
* *
92084344 AGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAGTAGCCTACACTTAG
1 AGTAGCCTACACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGTAGCCTACACTTAG
* *
92084409 TACTACACACGTGACCTAACCATCTGATACACGT
66 TACTACACACGCGACCTAACCATCCGATACACGT
* * * ** * * *
92084443 AGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGTCTGCACTT
1 AGTAGCCTACACTTAGTACTACACACGCGA-CCAA-TTATCCAGTACACATAGTAGCCTACACTT
* ** *
92084508 AGTAC-ACACATGCGACC-AATTATCCGGTACACGT
64 AGTACTACACACGCGACCTAACCATCCGATACACGT
92084542 AGTAGCCTACACTTAGTACTACACAC
1 AGTAGCCTACACTTAGTACTACACAC
92084568 ATGAGCTCAC
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
99 65 0.61
100 13 0.12
101 28 0.26
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (99 bp):
AGTAGCCTACACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGTAGCCTACACTTAG
TACTACACACGCGACCTAACCATCCGATACACGT
Found at i:92087295 original size:16 final size:17
Alignment explanation
Indices: 92087262--92087307 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 17
92087252 TATCATTACT
*
92087262 AATT-TAAAATTTTATA
1 AATTATAAAAATTTATA
92087278 AATTATAAAAATTT-TA
1 AATTATAAAAATTTATA
92087294 AA-T-TAAAAATTTAT
1 AATTATAAAAATTTAT
92087308 CATTTTAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 9 0.33
15 2 0.07
16 8 0.30
17 8 0.30
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTATAAAAATTTATA
Found at i:92097057 original size:21 final size:21
Alignment explanation
Indices: 92097033--92097072 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
92097023 TCCTAAGATG
*
92097033 TGAATTGGATTGAATTGAGTA
1 TGAATTGGATTAAATTGAGTA
*
92097054 TGAATTGTATTAAATTGAG
1 TGAATTGGATTAAATTGAG
92097073 CTAAATTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.25, T:0.40
Consensus pattern (21 bp):
TGAATTGGATTAAATTGAGTA
Found at i:92097575 original size:25 final size:24
Alignment explanation
Indices: 92097547--92097602 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
92097537 CTCGCTTGAA
92097547 CTTCCCGATATATGGCTATCTGGAG
1 CTTCCCGATA-ATGGCTATCTGGAG
* * * *
92097572 CTTCCTGTTAATGGCTTTTTGGAG
1 CTTCCCGATAATGGCTATCTGGAG
*
92097596 CTACCCG
1 CTTCCCG
92097603 TTATTGACTC
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
24 17 0.68
25 8 0.32
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (24 bp):
CTTCCCGATAATGGCTATCTGGAG
Found at i:92097605 original size:24 final size:24
Alignment explanation
Indices: 92097558--92097605 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
92097548 TTCCCGATAT
* *
92097558 ATGGCTATCTGGAGCTTCCTGTTA
1 ATGGCTATCTGGAGCTACCCGTTA
* *
92097582 ATGGCTTTTTGGAGCTACCCGTTA
1 ATGGCTATCTGGAGCTACCCGTTA
92097606 TTGACTCGCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.21, G:0.25, T:0.38
Consensus pattern (24 bp):
ATGGCTATCTGGAGCTACCCGTTA
Found at i:92117427 original size:3 final size:3
Alignment explanation
Indices: 92117419--92117443 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
92117409 TCAGGTCTAG
92117419 ACT ACT ACT ACT ACT ACT ACT ACT A
1 ACT ACT ACT ACT ACT ACT ACT ACT A
92117444 AAAGAAGGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (3 bp):
ACT
Found at i:92129838 original size:37 final size:37
Alignment explanation
Indices: 92129788--92129866 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
92129778 TTATTACGAA
* * * *
92129788 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACAAGAAGTCATCGG
*
92129825 GTCTTACCCGGACAAAATCCCCACAAGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACAAGAAGTCATCGG
92129862 GTCTT
1 GTCTT
92129867 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACAAGAAGTCATCGG
Found at i:92130063 original size:47 final size:47
Alignment explanation
Indices: 92129985--92130536 Score: 926
Period size: 47 Copynumber: 11.7 Consensus size: 47
92129975 CCCTTCGGGA
* * * * * *
92129985 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92130032 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92130079 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92130126 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92130173 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92130220 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92130267 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92130314 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92130361 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92130408 CTTATCACATATATACACTTTCACATTTATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92130455 CTTATCACATATATACACTTTCACATTCATCACATCGGCAATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
92130502 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
92130537 AGAATCCTAA
Statistics
Matches: 480, Mismatches: 24, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
46 1 0.00
47 479 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:92140931 original size:30 final size:30
Alignment explanation
Indices: 92140895--92140957 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
92140885 GCTTCGTCCT
92140895 CATGACTTGCCACTAATAGTTATTCAGTGA
1 CATGACTTGCCACTAATAGTTATTCAGTGA
*
92140925 CATGACTTGCCACTGATAGTTATTCAGTGA
1 CATGACTTGCCACTAATAGTTATTCAGTGA
92140955 CAT
1 CAT
92140958 CTCCTCTATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (30 bp):
CATGACTTGCCACTAATAGTTATTCAGTGA
Found at i:92154180 original size:34 final size:34
Alignment explanation
Indices: 92154137--92154204 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
92154127 TAAATTAGAC
92154137 AATGGTTGGGTTACTTAGACCTCCAAAACTTTAT
1 AATGGTTGGGTTACTTAGACCTCCAAAACTTTAT
*
92154171 AATGGTTGGGTTACTTATACCTCCAAAACTTTAT
1 AATGGTTGGGTTACTTAGACCTCCAAAACTTTAT
92154205 GTCATACATG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (34 bp):
AATGGTTGGGTTACTTAGACCTCCAAAACTTTAT
Found at i:92157552 original size:27 final size:27
Alignment explanation
Indices: 92157522--92157595 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
92157512 ACTGAAATGC
*
92157522 CCTCGACTTGTAAAATTACCAAAGTAA
1 CCTCGATTTGTAAAATTACCAAAGTAA
* * **** *
92157549 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTGTAAAATTACCAAAGTAA
92157576 CCTCGATTTGTAAAATTACC
1 CCTCGATTTGTAAAATTACC
92157596 GTTTTACCCT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (27 bp):
CCTCGATTTGTAAAATTACCAAAGTAA
Found at i:92157596 original size:27 final size:27
Alignment explanation
Indices: 92157549--92157934 Score: 375
Period size: 27 Copynumber: 14.3 Consensus size: 27
92157539 ACCAAAGTAA
*
92157549 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
*
92157576 CCTCGATTTGTAAAATTACCGTTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
* **
92157603 CCTCGATTTTTAAAATTACTATTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
* * *
92157630 CCTCGATTTACAGAATTAACGTTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
* * **
92157657 CCTC-AGTTTACAGAATTACTATTTTAC
1 CCTCGA-TTTATAAAATTACCGTTTTAC
* *
92157684 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
*
92157711 CCTCGATTTGTAAAATTACCGTTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
* * *
92157738 CCTTGATTTATAGAATTACCATTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
* **
92157765 CCTC-AGTTTACAAAATTACTATTTTAC
1 CCTCGA-TTTATAAAATTACCGTTTTAC
* * * *
92157792 CCTCAATTTACAGAATTACTGTTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
* *
92157819 CCTCGATTTGTAAAATTACCGTTTCAC
1 CCTCGATTTATAAAATTACCGTTTTAC
* * *
92157846 CCTTGATTTACAAAATTACTAG-TTTAC
1 CCTCGATTTATAAAATTAC-CGTTTTAC
* *
92157873 CCTC-AGTTTACAAAATTATCGTTTTAC
1 CCTCGA-TTTATAAAATTACCGTTTTAC
* * * *
92157900 CCTCGATTTACAGAATTATCATTTTAC
1 CCTCGATTTATAAAATTACCGTTTTAC
*
92157927 CCTTGATT
1 CCTCGATT
92157935 GTGAAATTAC
Statistics
Matches: 305, Mismatches: 46, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
26 4 0.01
27 297 0.97
28 4 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
CCTCGATTTATAAAATTACCGTTTTAC
Found at i:92157701 original size:108 final size:107
Alignment explanation
Indices: 92157570--92157944 Score: 495
Period size: 108 Copynumber: 3.5 Consensus size: 107
92157560 AGAATTACCG
** * * * ** *
92157570 TTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTTTAAAATTACTATTTTACCCTCG
1 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTG
*
92157635 ATTTACAGAATTAACGTTTTACCCTCAGTTTACAGAATTACTA
66 ATTTACAGAATTAAC-TTTTACCCTCAGTTTACAAAATTACTA
*
92157678 TTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTG
1 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTG
* *
92157743 ATTTATAGAATTACCATTTTACCCTCAGTTTACAAAATTACTA
66 ATTTACAGAATTAAC-TTTTACCCTCAGTTTACAAAATTACTA
* ** *
92157786 TTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCGATTTGTAAAATTACCGTTTCACCCTTG
1 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTG
* *
92157851 ATTTACAAAATT-ACTAGTTTACCCTCAGTTTACAAAATTA-TCG
66 ATTTACAGAATTAACT--TTTACCCTCAGTTTACAAAATTACT-A
* * *
92157894 TTTTACCCTCGATTTACAGAATTATCATTTTACCCTTGA-TTGTGAAATTAC
1 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTGTAAAATTAC
92157945 TGAAATACTC
Statistics
Matches: 238, Mismatches: 26, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
106 1 0.00
107 13 0.05
108 224 0.94
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (107 bp):
TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTTG
ATTTACAGAATTAACTTTTACCCTCAGTTTACAAAATTACTA
Found at i:92157977 original size:27 final size:26
Alignment explanation
Indices: 92157939--92158088 Score: 174
Period size: 27 Copynumber: 5.6 Consensus size: 26
92157929 TTGATTGTGA
*
92157939 AATTACTGAAATACTCCTGTAGGGTAG
1 AATTACCGAAATAC-CCTGTAGGGTAG
* *
92157966 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATA-CCCTGTAGGGTAG
* * *
92157993 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCC-TGTAGGGTAG
*
92158020 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATA-CCCTGTAGGGTAG
*
92158047 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCC-TGTAGGGTAG
*
92158074 AAATACCGAAATACC
1 AATTACCGAAATACC
92158089 GAAATACCCT
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
26 6 0.06
27 95 0.90
28 4 0.04
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (26 bp):
AATTACCGAAATACCCTGTAGGGTAG
Found at i:92158003 original size:54 final size:54
Alignment explanation
Indices: 92157939--92158088 Score: 214
Period size: 54 Copynumber: 2.8 Consensus size: 54
92157929 TTGATTGTGA
*
92157939 AATTACTGAAATACTCC-TGTAGGGTAGAATTTCCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATAC-CCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * * *
92157993 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
*
92158047 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACC
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACC
92158089 GAAATACCCT
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
53 3 0.04
54 82 0.96
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
Found at i:92158134 original size:62 final size:61
Alignment explanation
Indices: 92158023--92158138 Score: 178
Period size: 62 Copynumber: 1.9 Consensus size: 61
92158013 AGGATAGAAT
92158023 TACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 TACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTA-AAATACCGAAA
* * * * *
92158085 TACCGAAATACCCTTGTAGGGTAGAATTATCGAGATACCTTTGTGGGGTAAAAT
1 TACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAAAAT
92158139 TACCATTTTG
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
61 4 0.08
62 45 0.92
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (61 bp):
TACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAAAATACCGAAA
Found at i:92158380 original size:27 final size:27
Alignment explanation
Indices: 92158338--92158419 Score: 112
Period size: 27 Copynumber: 3.0 Consensus size: 27
92158328 GGAGGAAGCG
*
92158338 TTCTGGTGGCTATGCCACAAATATCT-T
1 TTCTGGTGGCTCTGCCAC-AATATCTGT
92158365 TTCTGGTGGCTCTGCCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
* * *
92158392 ATCTGGTGACTCTGTCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
92158419 T
1 T
92158420 GACCGATCGA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
26 7 0.14
27 42 0.86
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.38
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAATATCTGT
Found at i:92158539 original size:22 final size:22
Alignment explanation
Indices: 92158507--92158565 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
92158497 CCCATTATTA
*
92158507 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
92158529 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
92158551 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
92158566 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:92158779 original size:27 final size:27
Alignment explanation
Indices: 92158722--92158803 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
92158712 TATTCTGTTA
* * *
92158722 GGTGGCTTTGCCACATTATCTG-ATTCC
1 GGTGGCTCTGCCACAATATCTGTA-TCT
92158749 GGTGGCTCTGCCACAATATCTGTATCT
1 GGTGGCTCTGCCACAATATCTGTATCT
* * *
92158776 GGTGACTCTGTCACGATATCTGT-TCT
1 GGTGGCTCTGCCACAATATCTGTATCT
92158802 GG
1 GG
92158804 CAGTCATGCT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 5 0.10
27 42 0.88
28 1 0.02
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.35
Consensus pattern (27 bp):
GGTGGCTCTGCCACAATATCTGTATCT
Found at i:92158929 original size:6 final size:6
Alignment explanation
Indices: 92158920--92159070 Score: 116
Period size: 6 Copynumber: 24.8 Consensus size: 6
92158910 TTGCATTCAC
* *
92158920 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
92158969 ATTCTG -TTACTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* * * *
92159018 ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG -TTACTG ATTTTC ATTCTA
1 ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
92159066 ATTCT
1 ATTCT
92159071 CATTTTGGTT
Statistics
Matches: 117, Mismatches: 14, Indels: 28
0.74 0.09 0.18
Matches are distributed among these distances:
5 9 0.08
6 96 0.82
7 9 0.08
8 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:92159004 original size:49 final size:51
Alignment explanation
Indices: 92158923--92159041 Score: 163
Period size: 49 Copynumber: 2.3 Consensus size: 51
92158913 CATTCACATT
92158923 CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGATTCTGTTA
1 CTGATTCTGATTCTGTCACCTAA---T-ATTCTGATTCTGATTCTGATTCTGTTA
92158978 CTGATTCTGATTCTGTCACCT-A-ATTCTGATTCTGATTCTGATTCTGTTA
1 CTGATTCTGATTCTGTCACCTAATATTCTGATTCTGATTCTGATTCTGTTA
*
92159027 CTAATAT-TGATTCTG
1 CTGAT-TCTGATTCTG
92159042 ATTCTGTTAC
Statistics
Matches: 62, Mismatches: 1, Indels: 8
0.87 0.01 0.11
Matches are distributed among these distances:
49 39 0.63
50 1 0.02
54 1 0.02
55 21 0.34
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (51 bp):
CTGATTCTGATTCTGTCACCTAATATTCTGATTCTGATTCTGATTCTGTTA
Found at i:92159007 original size:55 final size:55
Alignment explanation
Indices: 92158923--92159048 Score: 209
Period size: 55 Copynumber: 2.3 Consensus size: 55
92158913 CATTCACATT
**
92158923 CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGATT-CTGTTA
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTG-TTACTAATA
92158978 CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATA
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATA
*
92159033 TTGATTCTGATTCTGT
1 CTGATTCTGATTCTGT
92159049 TACTGATTTT
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
54 2 0.03
55 65 0.97
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (55 bp):
CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATA
Found at i:92161076 original size:27 final size:27
Alignment explanation
Indices: 92161046--92161120 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
92161036 TACTGAAATG
*
92161046 CCCTCAACTTGTAAAATTACCAAAGTA
1 CCCTCAATTTGTAAAATTACCAAAGTA
* * * ***
92161073 CCCTCGATTTATATAATTACCATTTTA
1 CCCTCAATTTGTAAAATTACCAAAGTA
92161100 CCCTCAATTTGTAAAATTACC
1 CCCTCAATTTGTAAAATTACC
92161121 GTTTTACCCT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (27 bp):
CCCTCAATTTGTAAAATTACCAAAGTA
Found at i:92161125 original size:27 final size:27
Alignment explanation
Indices: 92161071--92161532 Score: 480
Period size: 27 Copynumber: 17.4 Consensus size: 27
92161061 ATTACCAAAG
* *
92161071 TACCCTCGATTTATATAATTACCATTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
92161098 TACCCTCAATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
92161125 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
92161152 TACCCTCGATTT-TAAAATTA---TTT
1 TACCCTCGATTTATAAAATTACCGTTT
*
92161175 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* **
92161202 TACCC-C-AGTTTACAAAATTACTATTT
1 TACCCTCGA-TTTATAAAATTACCGTTT
* * *
92161228 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* **
92161255 TACCCTC-AGTTTATAGAATTACTATTT
1 TACCCTCGA-TTTATAAAATTACCGTTT
* *
92161282 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCGTTT
*
92161309 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * *
92161336 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
92161363 TACCCTC-AGTTTATAGAATTACTGTTT
1 TACCCTCGA-TTTATAAAATTACCGTTT
* *
92161390 TACCCTCGATTTA-CAAATTGCCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
*
92161416 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * * *
92161443 TACCCTTGATTTACAGAATTACTAG-TT
1 TACCCTCGATTTATAAAATTAC-CGTTT
* * *
92161470 TACCTTC-ATTTACAAAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
*
92161496 TACCCTCGATTTA-CAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
*
92161522 TACCCTTGATT
1 TACCCTCGATT
92161533 GTGAAATTAC
Statistics
Matches: 370, Mismatches: 50, Indels: 31
0.82 0.11 0.07
Matches are distributed among these distances:
23 15 0.04
24 7 0.02
25 2 0.01
26 91 0.25
27 251 0.68
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCGTTT
Found at i:92161246 original size:53 final size:54
Alignment explanation
Indices: 92161071--92161527 Score: 535
Period size: 54 Copynumber: 8.6 Consensus size: 54
92161061 ATTACCAAAG
* * * * * *
92161071 TACCCTCGATTTATATAATTACCATTTTACCCTCAATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAAAATTACTGTTT
* *
92161125 TACCCTCGATTTATAGAATTATCGTTTTACCCTC-GATTT-TAAAATTA---TTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAG-TTTATAAAATTACTGTTT
* * *
92161175 TACCCTCGATTTATAGAATTACCGTTTTACCC-CAGTTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAAAATTACTGTTT
* * *
92161228 TACCCTCGATTTACAGAATTACTGTTTTACCCTCAGTTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAAAATTACTGTTT
* * * *
92161282 TACCCTCGATTTATAGAATTACCATTTTACCCTC-GATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAG-TTTATAAAATTACTGTTT
* *
92161336 TACCCTCGATTTACAGAATTATCGTTTTACCCTCAGTTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAAAATTACTGTTT
* * *
92161390 TACCCTCGATTTACA-AATTGCCGTTTTACCCTC-GATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAG-TTTATAAAATTACTGTTT
* * * *
92161443 TACCCTTGATTTACAGAATTACTAG-TTTACCTTCA-TTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTAC-CGTTTTACCCTCAGTTTATAAAATTACT-GTTT
92161496 TACCCTCGATTTACA-AATTACCGTTTTACCCT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCT
92161528 TGATTGTGAA
Statistics
Matches: 350, Mismatches: 38, Indels: 32
0.83 0.09 0.08
Matches are distributed among these distances:
49 4 0.01
50 42 0.12
51 1 0.00
52 14 0.04
53 115 0.33
54 172 0.49
55 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAAAATTACTGTTT
Found at i:92161587 original size:26 final size:27
Alignment explanation
Indices: 92161537--92161728 Score: 212
Period size: 26 Copynumber: 7.3 Consensus size: 27
92161527 TTGATTGTGA
*
92161537 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
92161564 AATTTTCGAAATA-CCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
92161590 AATTACTGAAATA-CCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
92161616 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
92161643 AATTATCGAAATACCCTTGTAGGGTA-
1 AATTACCGAAATACCCCTGTAGGGTAG
*
92161669 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
92161696 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
92161722 AATTACC
1 AATTACC
92161729 ATTTTGCCCC
Statistics
Matches: 138, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
26 84 0.61
27 54 0.39
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:92161594 original size:53 final size:54
Alignment explanation
Indices: 92161537--92161728 Score: 232
Period size: 53 Copynumber: 3.6 Consensus size: 54
92161527 TTGATTGTGA
* ** *
92161537 AATTACTGAAATACCCCTGTAGGGTAGAATTTTCGAAATA-CCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
92161590 AATTACTGAAATA-CCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
*
92161643 AATTA-TCGAAATACCCTTGTAGGGTA-AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
92161696 AATTACCGAGATA-CCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
92161729 ATTTTGCCCC
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
52 32 0.27
53 77 0.65
54 10 0.08
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:92161965 original size:27 final size:26
Alignment explanation
Indices: 92161927--92162009 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
92161917 CGGAGGAAGC
*
92161927 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
92161954 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
92161980 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
92162007 GTT
1 GTT
92162010 GACCGATCGA
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 10 0.19
27 42 0.81
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:92162130 original size:22 final size:22
Alignment explanation
Indices: 92162098--92162156 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
92162088 CCCGTTATTA
*
92162098 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
92162120 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
92162142 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
92162157 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:92162372 original size:27 final size:27
Alignment explanation
Indices: 92162318--92162391 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
92162308 TTAGGTGGTT
* * *
92162318 TGCCACATTATCTG-ATTCTAGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGACTC
92162345 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGACTC
* *
92162372 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
92162392 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGACTC
Found at i:92162516 original size:6 final size:6
Alignment explanation
Indices: 92162507--92162638 Score: 139
Period size: 6 Copynumber: 21.8 Consensus size: 6
92162497 TTGCATTCAC
92162507 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
92162555 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
*
92162604 ATTCTG ATTCTG -TTACTG ATTTTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
92162639 CATTTTGGTT
Statistics
Matches: 107, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
5 8 0.07
6 90 0.84
7 7 0.07
8 2 0.02
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:92165038 original size:37 final size:37
Alignment explanation
Indices: 92164988--92165059 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
92164978 CCATAACAAG
*
92164988 TGACAAACAAGCCTATTTATAGCTTTTAGGTGGTCAT
1 TGACAAACAAGCCTATTTATAGCTTTCAGGTGGTCAT
92165025 TGACAAACAAGCCTATTTATAGCTTTCAGGTGGTC
1 TGACAAACAAGCCTATTTATAGCTTTCAGGTGGTC
92165060 GTCGTCCCTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (37 bp):
TGACAAACAAGCCTATTTATAGCTTTCAGGTGGTCAT
Done.