Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 282 of 325
Found at i:92166389 original size:24 final size:25
Alignment explanation
Indices: 92166334--92166389 Score: 96
Period size: 25 Copynumber: 2.2 Consensus size: 25
92166324 ACAAAAACTA
92166334 GAAATAATTTTGTTTTCTTTTAGGGT
1 GAAA-AATTTTGTTTTCTTTTAGGGT
92166360 GAAAAATTTTGTTTTCTTTTA-GGT
1 GAAAAATTTTGTTTTCTTTTAGGGT
92166384 GAAAAA
1 GAAAAA
92166390 GAAAATTCTC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 9 0.30
25 17 0.57
26 4 0.13
ACGTcount: A:0.30, C:0.04, G:0.18, T:0.48
Consensus pattern (25 bp):
GAAAAATTTTGTTTTCTTTTAGGGT
Found at i:92167059 original size:18 final size:18
Alignment explanation
Indices: 92167022--92167060 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
92167012 AATGAATTCA
**
92167022 TTTCATCTCCATTTTTAT
1 TTTCATCTCCATTTCAAT
*
92167040 TTTCATTTCCATTTCAAT
1 TTTCATCTCCATTTCAAT
92167058 TTT
1 TTT
92167061 GAGAAAAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTCATCTCCATTTCAAT
Found at i:92177611 original size:42 final size:42
Alignment explanation
Indices: 92177564--92177727 Score: 231
Period size: 42 Copynumber: 3.9 Consensus size: 42
92177554 GGGATGTGAT
*
92177564 TTCATGTAAGACCATGTCTGGGAAATTGTCATCGATATGAGA
1 TTCATGTAAGACCATGTCTGGGAAATTGGCATCGATATGAGA
* * *
92177606 TTCATGTAAAACCATGTCTGGGAAACTGGCATTGATATGAGA
1 TTCATGTAAGACCATGTCTGGGAAATTGGCATCGATATGAGA
* *
92177648 TTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGAGA
1 TTCATGTAAGACCATGTCTGGGAAATTGGCATCGATATGAGA
* **
92177690 TTCGTGTAAGACCATAG-CTGGGCTATTGGCATCGATAT
1 TTCATGTAAGACCAT-GTCTGGGAAATTGGCATCGATAT
92177728 ACTATAACAT
Statistics
Matches: 110, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
42 109 0.99
43 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
TTCATGTAAGACCATGTCTGGGAAATTGGCATCGATATGAGA
Found at i:92183911 original size:30 final size:32
Alignment explanation
Indices: 92183847--92183911 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 32
92183837 TTCAATCTCA
*
92183847 ACATATACTGGGCCGAAACCTTTACATTATTC
1 ACATATACTGGGCCGAAACCTTTACATAATTC
*
92183879 ACAT-TACTGGGCC-AAAGCCTTT-TATAATTC
1 ACATATACTGGGCCGAAA-CCTTTACATAATTC
92183909 ACA
1 ACA
92183912 ACTCATATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 12 0.40
31 14 0.47
32 4 0.13
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (32 bp):
ACATATACTGGGCCGAAACCTTTACATAATTC
Found at i:92184186 original size:25 final size:25
Alignment explanation
Indices: 92184158--92184225 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
92184148 CTCTTTTAAT
* *
92184158 AACTGGGGCAAAGCGCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTACGGTA
92184183 AACTGGGGCAAAGCCCTTTACGGTA
1 AACTGGGGCAAAGCCCTTTACGGTA
*
92184208 AACTGAGGCAAA-CCCTTT
1 AACTGGGGCAAAGCCCTTT
92184226 TGCACTTCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 6 0.15
25 34 0.85
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTACGGTA
Found at i:92196906 original size:22 final size:23
Alignment explanation
Indices: 92196881--92196924 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
92196871 ATGGTTCCGA
92196881 ACAAACTA-AAAAGAA-AATAAAC
1 ACAAA-TAGAAAAGAAGAATAAAC
*
92196903 ACAAATAGTAAAGAAGAATAAA
1 ACAAATAGAAAAGAAGAATAAA
92196925 AGGTTACCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 2 0.11
22 11 0.58
23 6 0.32
ACGTcount: A:0.70, C:0.09, G:0.09, T:0.11
Consensus pattern (23 bp):
ACAAATAGAAAAGAAGAATAAAC
Found at i:92197009 original size:6 final size:6
Alignment explanation
Indices: 92196998--92197058 Score: 50
Period size: 6 Copynumber: 9.5 Consensus size: 6
92196988 TAAGTTTAAT
* * *
92196998 AAAATA AAAATA AAGCAACTA AAAATAA AAAATA AACATA AAAAGA AAAAGA
1 AAAATA AAAATA AA--AA-TA AAAAT-A AAAATA AAAATA AAAATA AAAATA
*
92197050 AAAAGA AAA
1 AAAATA AAA
92197059 GAAATAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
6 34 0.71
7 8 0.17
8 2 0.04
9 4 0.08
ACGTcount: A:0.79, C:0.05, G:0.07, T:0.10
Consensus pattern (6 bp):
AAAATA
Found at i:92198723 original size:43 final size:43
Alignment explanation
Indices: 92198676--92198769 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 43
92198666 CCCAGGTAGG
* * *
92198676 GTCTTACACGAAATC-GATTAACGATGCCAATCTCCCAGACATA
1 GTCTTACACGAAATCTCAAT-ACAATGCCAATCTCCCAGACATA
* * *
92198719 GTCTTACACGTAATCTCAATACAATGCCAATGTCCCAGACATG
1 GTCTTACACGAAATCTCAATACAATGCCAATCTCCCAGACATA
92198762 GTCTTACA
1 GTCTTACA
92198770 TGTAGTCACA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
43 42 0.95
44 2 0.05
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.26
Consensus pattern (43 bp):
GTCTTACACGAAATCTCAATACAATGCCAATCTCCCAGACATA
Found at i:92205028 original size:46 final size:46
Alignment explanation
Indices: 92204858--92205031 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
92204848 ATTATTGTGG
* * * * * *
92204858 GCTAGTGCAAGACATGTCTGGGACATGCATTGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGAAGAGA
* * * * *
92204904 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGTGAAGAGA
*
92204952 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGTGAAGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGAAG-AGA
*
92204998 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
92205032 TACGAGATGC
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
46 56 0.52
47 28 0.26
48 23 0.21
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGAAGAGA
Found at i:92205118 original size:140 final size:142
Alignment explanation
Indices: 92204861--92205216 Score: 351
Period size: 140 Copynumber: 2.5 Consensus size: 142
92204851 ATTGTGGGCT
* * *
92204861 AGTGCAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCTAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATGTCTGG
*
92204926 GACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCG
66 GACATGGCATCAGCATGGAGACGAGAGCTAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCG
*
92204990 -TGAAG-TAAGCC
131 ACGAAGAT-AGCC
* * * *
92205001 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGCG-TC-AGT-TAAGACCATGTTTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCTAGTGTAAGACCATGTCTG
* * *
92205062 GGACATGGCAT-TGACATGGATATGCGAGAGCTAGTGTAAGACAATGTCT-GAGACATGGCGTCG
65 GGACATGGCATCAG-CATGGAGA--CGAGAGCTAGTGTAAGAC-ATGTCTAG-GACATGGCATCG
*
92205125 GCCTCGACGATGATAGCC
125 GCCTCGACGAAGATAGCC
* * * *
92205143 TGTGTAAGACCATGTCAGGGACATGACATC-G--ACTTGA-GACATGAGCCAGTGTAAGACCATG
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCACATGATG--A-GAGCTAGTGTAAGACCATG
*
92205204 TCTAGGACATGGC
61 TCTGGGACATGGC
92205217 GTTGGCATTC
Statistics
Matches: 178, Mismatches: 20, Indels: 30
0.78 0.09 0.13
Matches are distributed among these distances:
136 1 0.01
137 30 0.17
138 3 0.02
139 20 0.11
140 47 0.26
141 16 0.09
142 15 0.08
143 17 0.10
144 5 0.03
145 3 0.02
146 21 0.12
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (142 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAGTGTAAGACCATGTCTGG
GACATGGCATCAGCATGGAGACGAGAGCTAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCG
ACGAAGATAGCC
Found at i:92205158 original size:49 final size:47
Alignment explanation
Indices: 92204902--92205218 Score: 131
Period size: 46 Copynumber: 6.7 Consensus size: 47
92204892 CACATTATGA
* * * *
92204902 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-AGCATTGAGACGA-
1 GAGCCAGTGTAAGACCATGTCTGAGACATGGCGTCGA-C-TCGAGAC-AT
* * * *
92204950 GAGCTAGTGTAAGA-CATGTCT-AGGACAT-GCATCGGCCTCGTGA-AGT
1 GAGCCAGTGTAAGACCATGTCTGA-GACATGGCGTC-GACTCGAGACA-T
* * * *
92204996 AAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAG--AT
1 GAGCCAGTGTAAGACCATGTCTGAGACATGGCGTCGACT-CGAGACAT
* * * * * * * *
92205040 GCGTCAGT-TAAGACCATGTTTGGGACATGGCATTGACATGGATATGCGA-
1 GAGCCAGTGTAAGACCATGTCTGAGACATGGCGTCGAC-TCGAGA--C-AT
* * * *
92205089 GAGCTAGTGTAAGACAATGTCTGAGACATGGCGTCGGCCTCGACGATGAT
1 GAGCCAGTGTAAGACCATGTCTGAGACATGGCGTC-GACTCGA-GA-CAT
* * * * * *
92205139 -AGCCTGTGTAAGACCATGTCAGGGACATGACATCGACTTGAGACAT
1 GAGCCAGTGTAAGACCATGTCTGAGACATGGCGTCGACTCGAGACAT
92205185 GAGCCAGTGTAAGACCATGTCT-AGGACATGGCGT
1 GAGCCAGTGTAAGACCATGTCTGA-GACATGGCGT
92205219 TGGCATTCTA
Statistics
Matches: 203, Mismatches: 45, Indels: 43
0.70 0.15 0.15
Matches are distributed among these distances:
43 5 0.02
44 20 0.10
45 12 0.06
46 44 0.22
47 42 0.21
48 19 0.09
49 33 0.16
50 25 0.12
51 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGAGACATGGCGTCGACTCGAGACAT
Found at i:92210747 original size:43 final size:43
Alignment explanation
Indices: 92210707--92210804 Score: 151
Period size: 43 Copynumber: 2.3 Consensus size: 43
92210697 TGTATTGGTG
*
92210707 CTAAGTGTGCTAAACAATTATAGCCTCAGCTAATTAATTGGCA
1 CTAAGTGTGCGAAACAATTATAGCCTCAGCTAATTAATTGGCA
* * *
92210750 CTAAGTGTGCGATACAATTATAGCTTCAGCTACTTAATTGGCA
1 CTAAGTGTGCGAAACAATTATAGCCTCAGCTAATTAATTGGCA
*
92210793 CTAAGAGTGCGA
1 CTAAGTGTGCGA
92210805 GTTCGTTGAG
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (43 bp):
CTAAGTGTGCGAAACAATTATAGCCTCAGCTAATTAATTGGCA
Found at i:92212457 original size:41 final size:41
Alignment explanation
Indices: 92212400--92212481 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
92212390 TGGTTTATGA
92212400 TAGTTCTGATCTGAGTTATATGTCCGGTAATGCCCCTTAAC
1 TAGTTCTGATCTGAGTTATATGTCCGGTAATGCCCCTTAAC
92212441 TAGTTCTGATCTGAGTTATATGTCCGGTAATGCCCCTTAAC
1 TAGTTCTGATCTGAGTTATATGTCCGGTAATGCCCCTTAAC
92212482 CTATTCAGGC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (41 bp):
TAGTTCTGATCTGAGTTATATGTCCGGTAATGCCCCTTAAC
Found at i:92222974 original size:140 final size:139
Alignment explanation
Indices: 92222688--92222994 Score: 352
Period size: 140 Copynumber: 2.2 Consensus size: 139
92222678 ATATTGTGAA
* * *
92222688 CTAGCGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATGAT-AGAGCCAATGTAAGACCATGTCT
* *
92222753 AGGACATGGCATCGGCATTGAGACGAAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTC
65 AGGACATGGCATCGGCATCGAGACGAAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGACTC
*
92222818 GTGAAGTAAG
130 GAGAAGTAAG
* * * * *
92222828 CCAGTGTAAGACATATCTGGGACATGCATTGGCTACGA-GAT-GTGTCAATGTAAGACCATGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATTGGCCAC-ATGATAGAGCCAATGTAAGACCATGTCT
* * * * * *
92222891 GGGACATGGCGTCGGCCTCGACGATGATAGTTAGTGTAAGACAATGTCTGGGACATGGCATC-GA
65 AGGACATGGCATCGGCATCGA-GACGAAAGCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCAGA
* *
92222955 CTTGAGACA-TGAG
127 CTCGAGA-AGTAAG
92222968 CTAGTGTAAGACCATGTCTGGGACATG
1 CTAGTGTAAGA-CATGTCTGGGACATG
92222995 GCGCCGGCAT
Statistics
Matches: 140, Mismatches: 21, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
138 36 0.26
139 17 0.12
140 66 0.47
141 21 0.15
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (139 bp):
CTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATGATAGAGCCAATGTAAGACCATGTCTA
GGACATGGCATCGGCATCGAGACGAAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGACTCG
AGAAGTAAG
Found at i:92222985 original size:47 final size:47
Alignment explanation
Indices: 92222731--92222996 Score: 210
Period size: 47 Copynumber: 5.7 Consensus size: 47
92222721 CACATTATGA
* *
92222731 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGA-
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGAC-AT
* * * *
92222779 AAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGTGA-AGT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCTTGAGACA-T
* * * * *
92222825 AAGCCAGTGTAAGA-CATATCTGGGACAT-GCATTGGC-T-ACGAGAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGA-GACAT
* * * * *
92222869 GTG-TCAATGTAAGACCATGTCTGGGACATGGCGTCGGCCT-CGACGAT
1 GAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGAC-AT
* * *
92222916 GATAGTTAGTGTAAGACAATGTCTGGGACATGGCATCGACTTGAGACAT
1 G--AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGACAT
92222965 GAGCTAGTGTAAGACCATGTCTGGGACATGGC
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGC
92222997 GCCGGCATTC
Statistics
Matches: 174, Mismatches: 30, Indels: 29
0.75 0.13 0.12
Matches are distributed among these distances:
44 13 0.07
45 16 0.09
46 47 0.27
47 48 0.28
48 12 0.07
49 34 0.20
50 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGACAT
Found at i:92225332 original size:39 final size:39
Alignment explanation
Indices: 92225211--92225389 Score: 201
Period size: 37 Copynumber: 4.7 Consensus size: 39
92225201 TCGGATGATA
* * ** *
92225211 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-TATTAT
* * *
92225251 TCCGGGCTAAGT--CGAAGGCA-TTGTGCGAGCTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
92225287 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
92225327 ACCGGGCTAAGTCCCGAAGGCATTTGTGC--GTTA-TAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
92225363 AACCGGGCTAAGTCCCGAAGGCATTTG
1 -ACCGGGCTAAGTCCCGAAGGCATTTG
92225390 AGCTAGTGGC
Statistics
Matches: 122, Mismatches: 11, Indels: 15
0.82 0.07 0.10
Matches are distributed among these distances:
36 5 0.04
37 48 0.39
38 5 0.04
39 38 0.31
40 26 0.21
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
Found at i:92225420 original size:76 final size:77
Alignment explanation
Indices: 92225208--92225422 Score: 255
Period size: 76 Copynumber: 2.8 Consensus size: 77
92225198 TGTTCGGATG
92225208 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGT-CGAAGGC
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTATA-TCCGGGCTAAGTCCGAAGGC
92225270 ATTGTGCGAGCTACT
64 ATTGTGC-AGCTACT
* * * ***
92225285 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGT-CCGAAGGCA
*
92225349 TTTGTGC-GTTA-T
65 -TTGTGCAGCTACT
*
92225361 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAAACTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCT-AAGTCCGAAGG
92225423 TACTTGGTTT
Statistics
Matches: 117, Mismatches: 14, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
76 60 0.51
77 40 0.34
78 11 0.09
79 6 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (77 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCGAAGGCAT
TGTGCAGCTACT
Found at i:92233460 original size:116 final size:117
Alignment explanation
Indices: 92233255--92233475 Score: 338
Period size: 116 Copynumber: 1.9 Consensus size: 117
92233245 CGGATGATAA
* * *
92233255 CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTTG
* *
92233320 TGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATAT
66 TGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATAT
* * *
92233372 CCGGGCTAAGTCCCGA-AGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAGA-GCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTT
*
92233435 GTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
65 GTGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
92233476 AGCTAGTGGC
Statistics
Matches: 94, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
116 66 0.70
117 28 0.30
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (117 bp):
CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATAT
Found at i:92233508 original size:39 final size:39
Alignment explanation
Indices: 92233255--92233498 Score: 302
Period size: 40 Copynumber: 6.2 Consensus size: 39
92233245 CGGATGATAA
* * *
92233255 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTATA-T
92233295 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
92233335 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
*
92233372 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
92233411 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
92233451 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAT
92233491 CC-GGCTAA
1 CCGGGCTAA
92233499 ACTCCGAAGG
Statistics
Matches: 187, Mismatches: 9, Indels: 17
0.88 0.04 0.08
Matches are distributed among these distances:
37 36 0.19
38 1 0.01
39 45 0.24
40 101 0.54
41 4 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:92235647 original size:27 final size:27
Alignment explanation
Indices: 92235609--92235667 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
92235599 TTATAAAATA
92235609 TTATATCATTTGCAAACTTTGAGAAAC
1 TTATATCATTTGCAAACTTTGAGAAAC
92235636 TTATATCATTTGCAAACTTTGAGAAAC
1 TTATATCATTTGCAAACTTTGAGAAAC
92235663 TTATA
1 TTATA
92235668 AAATATTCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (27 bp):
TTATATCATTTGCAAACTTTGAGAAAC
Found at i:92243385 original size:18 final size:18
Alignment explanation
Indices: 92243364--92243402 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
92243354 TCTCATTAAG
92243364 TTTTTAAGATTCATTTAT
1 TTTTTAAGATTCATTTAT
*
92243382 TTTTTAAGATTCATTTGT
1 TTTTTAAGATTCATTTAT
92243400 TTT
1 TTT
92243403 CCTTTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.05, G:0.08, T:0.64
Consensus pattern (18 bp):
TTTTTAAGATTCATTTAT
Found at i:92249992 original size:28 final size:28
Alignment explanation
Indices: 92249929--92249982 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
92249919 TTCACATTTA
* *
92249929 TTTCACAATTTAACCCCTCAATTTACAC
1 TTTCTCAATTTAACCCCTCAATTGACAC
*
92249957 TTTCTCAATTTAATCCCT-AATTGACA
1 TTTCTCAATTTAACCCCTCAATTGACA
92249983 TTTTTGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.31, C:0.28, G:0.02, T:0.39
Consensus pattern (28 bp):
TTTCTCAATTTAACCCCTCAATTGACAC
Found at i:92255696 original size:14 final size:14
Alignment explanation
Indices: 92255677--92255710 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
92255667 AATAAAAAAC
*
92255677 AAACATATCAATAA
1 AAACATATAAATAA
*
92255691 AAACATATAAATAT
1 AAACATATAAATAA
92255705 AAACAT
1 AAACAT
92255711 GGTCAAAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.24
Consensus pattern (14 bp):
AAACATATAAATAA
Found at i:92260185 original size:46 final size:46
Alignment explanation
Indices: 92260096--92260318 Score: 163
Period size: 46 Copynumber: 4.8 Consensus size: 46
92260086 GGATGTAGGT
*
92260096 GCCGATGCCATGTCCCAGACAGGGTCTTACAC-GGAC--ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTGG-CTTA-ATCTCGTAG
92260142 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAAGTCTCG-AG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAA-TCTCGTAG
* * * ** * *
92260188 GCCGATGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTC-AAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTAATCTCGTAG
* * * * ***
92260234 CCCGATGCCATGTCCCAGTCATGGTCTTACACTGACTCTCATAGGGT-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TAATCTCGTAG
* *
92260282 GCCGATGCATGTGCCAGACATGTCTTACACTAGCTTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTA
92260319 CACAAGTGAC
Statistics
Matches: 141, Mismatches: 25, Indels: 23
0.75 0.13 0.12
Matches are distributed among these distances:
44 10 0.07
45 18 0.13
46 68 0.48
47 25 0.18
48 20 0.14
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAATCTCGTAG
Found at i:92262439 original size:48 final size:48
Alignment explanation
Indices: 92262365--92262456 Score: 130
Period size: 48 Copynumber: 1.9 Consensus size: 48
92262355 TTGGGGGTTA
* * **
92262365 CATTGAGTTAGCTTTAGGCCATGATATTGGCACTTCGGGTGTGAGATT
1 CATTGAGTTAGCTTCAGGCCACGATATTGGCACTAAGGGTGTGAGATT
* *
92262413 CATTGAGTTGGCTTCGGGCCACGATATTGGCACTAAGGGTGTGA
1 CATTGAGTTAGCTTCAGGCCACGATATTGGCACTAAGGGTGTGA
92262457 AACTTCTGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.21, C:0.16, G:0.32, T:0.32
Consensus pattern (48 bp):
CATTGAGTTAGCTTCAGGCCACGATATTGGCACTAAGGGTGTGAGATT
Found at i:92268252 original size:55 final size:53
Alignment explanation
Indices: 92268119--92268316 Score: 204
Period size: 55 Copynumber: 3.7 Consensus size: 53
92268109 AACTTACCAT
*
92268119 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACTAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACTAA
* * *
92268172 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACT-TCTCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACT-AA
*** * *
92268227 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACTAA
* * *
92268281 TTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
92268317 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
52 2 0.02
53 39 0.32
54 7 0.06
55 71 0.59
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACTAA
Found at i:92275802 original size:53 final size:55
Alignment explanation
Indices: 92275714--92275846 Score: 159
Period size: 53 Copynumber: 2.5 Consensus size: 55
92275704 CTTACCATTT
*
92275714 CCATGTCTTGACATGGTCTT-CTATGGTATCCTTGCCTTAT-G-AACTCA-CTAATG
1 CCATGTCTTGACATGGTCTTAC-ATGGGATCCTTGCCTTATAGTAACTCATC-AATG
* * * *
92275767 TCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTATAGTAACTCATCAATG
92275822 CCATGTCTTGACATGGTCTTACATG
1 CCATGTCTTGACATGGTCTTACATG
92275847 ATTTCCTTAC
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
52 2 0.03
53 31 0.46
54 2 0.03
55 31 0.46
56 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (55 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATAGTAACTCATCAATG
Found at i:92275881 original size:55 final size:51
Alignment explanation
Indices: 92275655--92275910 Score: 175
Period size: 55 Copynumber: 4.9 Consensus size: 51
92275645 ACGCGGGTAC
* * * *
92275655 CTTACC-ATTTCCATGACTTGTCATGGTCTTACGTGGTATCCTT-TTGAAA
1 CTTACCAATTTCCATGCCTTGACATGGTCTTACATGGTATCCTTATAGAAA
* *
92275704 CTTACC-ATTTCCATGTCTTGACATGGTCTT-CTATGGTATCCTTGCCTTATG-AA
1 CTTACCAATTTCCATGCCTTGACATGGTCTTAC-ATGGTATCCTT---ATA-GAAA
* * * * * *
92275757 CTCACTAATGT-CATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATTTCCATGCCTTGACATGGTCTTACAT-GG---TAT-CCTTATAGAAA
* * * * *
92275812 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTCAGAAA
1 CTTACCAATTTCCATGCCTTGACATGGTCTTACATGGTATCCTTA--T-AGAAA
*
92275865 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTTA
1 -CTTACCAATTTCCATGCCTTGACATGGTCTTACATGGTATCCTTA
92275911 AACCCTAATG
Statistics
Matches: 161, Mismatches: 26, Indels: 34
0.73 0.12 0.15
Matches are distributed among these distances:
48 1 0.01
49 38 0.24
50 5 0.03
51 3 0.02
52 1 0.01
53 30 0.19
54 16 0.10
55 61 0.38
57 2 0.01
58 4 0.02
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (51 bp):
CTTACCAATTTCCATGCCTTGACATGGTCTTACATGGTATCCTTATAGAAA
Found at i:92277274 original size:80 final size:80
Alignment explanation
Indices: 92277177--92277375 Score: 213
Period size: 80 Copynumber: 2.5 Consensus size: 80
92277167 TAATTATTGA
* * *
92277177 TGATTGTACATATGTGCCCCTATTTGTATTTTGGTACCCTTAATTGCACATACATGCCTATGTTT
1 TGATTGCACATATGTGCCCCTATTTGTATTTTGGTACCCTTAATTGCACATACATGCCCATATTT
*
92277242 GTACTT-TGATACCCC
66 GTACTTCAG-TACCCC
* * * ** * * * *
92277257 TGATTGCACATACGTGCCCTTGTTTGTACATTGGTACCCTTGATTGCGCATACGTGCCCCTATTT
1 TGATTGCACATATGTGCCCCTATTTGTATTTTGGTACCCTTAATTGCACATACATGCCCATATTT
92277322 GTACTTCAGTACCCC
66 GTACTTCAGTACCCC
* * * *
92277337 TGAATGCACTTATATGCTCCTATTTGT-TCTTTGGTACCC
1 TGATTGCACATATGTGCCCCTATTTGTAT-TTTGGTACCC
92277376 CTGAATACAC
Statistics
Matches: 95, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
80 94 0.99
81 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.39
Consensus pattern (80 bp):
TGATTGCACATATGTGCCCCTATTTGTATTTTGGTACCCTTAATTGCACATACATGCCCATATTT
GTACTTCAGTACCCC
Found at i:92277334 original size:40 final size:39
Alignment explanation
Indices: 92277177--92277417 Score: 167
Period size: 40 Copynumber: 6.0 Consensus size: 39
92277167 TAATTATTGA
* * *
92277177 TGATTGTACATATGTGCCCCTATTTGTATTTTGGTACCCT
1 TGATTGCACATACGTGCCCCTATTTGTA-CTTGGTACCCT
* * ** * * *
92277217 TAATTGCACATACATGCCTATGTTTGTACTTTGATACCCC
1 TGATTGCACATACGTGCCCCTATTTGTAC-TTGGTACCCT
* *
92277257 TGATTGCACATACGTGCCCTTGTTTGTACATTGGTACCCT
1 TGATTGCACATACGTGCCCCTATTTGTAC-TTGGTACCCT
* * *
92277297 TGATTGCGCATACGTGCCCCTATTTGTACTTCAGTACCCC
1 TGATTGCACATACGTGCCCCTATTTGTACTT-GGTACCCT
* * ** * * *
92277337 TGAATGCACTTATATGCTCCTATTTGTTCTTTGGTACCCC
1 TGATTGCACATACGTGCCCCTATTTGTAC-TTGGTACCCT
* * * * * *
92277377 TGAATACACTTACGTTCCCCTAATTATACTCTGGTAACCCT
1 TGATTGCACATACGTGCCCCTATTTGTACT-TGGT-ACCCT
92277418 GAATCAAATG
Statistics
Matches: 157, Mismatches: 39, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
39 3 0.02
40 148 0.94
41 6 0.04
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.38
Consensus pattern (39 bp):
TGATTGCACATACGTGCCCCTATTTGTACTTGGTACCCT
Found at i:92284493 original size:56 final size:55
Alignment explanation
Indices: 92284433--92284564 Score: 201
Period size: 56 Copynumber: 2.4 Consensus size: 55
92284423 TCCTAGACAA
* * **
92284433 GGTCTTACTCACACACATATATTGGTGTCACATATCGATGCCAACATATTAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACAT-TTAAACGT
*
92284489 GGTCTTACTTGCACACATATATCGAAGTCACATATCGATGCCAACATTTAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACATTTAAACGT
*
92284544 GGTCTTACACGCACACATATA
1 GGTCTTACTCGCACACATATA
92284565 CCGATGCCAT
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
55 27 0.39
56 42 0.61
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (55 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACATTTAAACGT
Found at i:92289126 original size:24 final size:25
Alignment explanation
Indices: 92289099--92289150 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
92289089 GCCTAGCCTC
**
92289099 TTTTAAT-AACTGGGGTGAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
**
92289123 TTTTGGTAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
92289148 TTT
1 TTT
92289151 AGCACTTCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:92289385 original size:27 final size:27
Alignment explanation
Indices: 92289355--92289526 Score: 175
Period size: 27 Copynumber: 6.4 Consensus size: 27
92289345 GGGGCAAAAT
* * *
92289355 GGTAATTTTCCCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
92289382 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
92289409 AGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * * *
92289436 AGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
92289463 GGTATTTTTACCCTACAAGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
92289490 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
92289517 GAT-ATTTTAC
1 GGTAATTTTAC
92289527 AAATCGAGAG
Statistics
Matches: 117, Mismatches: 28, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
26 6 0.05
27 111 0.95
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:92289427 original size:54 final size:53
Alignment explanation
Indices: 92289360--92289524 Score: 240
Period size: 54 Copynumber: 3.1 Consensus size: 53
92289350 AAAATGGTAA
* * * *
92289360 TTTTCCCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAT
1 TTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC-GTAT
* *
92289414 TTTTACCCTACAAGGGTATTTCAGTAATTCTACCTTATAGGGGTATTTCGGTAT
1 TTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC-GTAT
*
92289468 TTTTACCCTACAAGGGTATTTTGGTAATTCTACCCTATAGGGGTATTTCGATAT
1 TTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCG-TAT
92289522 TTT
1 TTT
92289525 ACAAATCGAG
Statistics
Matches: 100, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 99 0.99
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.39
Consensus pattern (53 bp):
TTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGTAT
Found at i:92289656 original size:26 final size:27
Alignment explanation
Indices: 92289506--92289660 Score: 190
Period size: 27 Copynumber: 5.8 Consensus size: 27
92289496 TCTACCCTAT
* * *
92289506 AGGGGTATTTCGAT-ATTTTACAAATC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * * * *
92289532 -GAGAGTATTTCGATAATTTCACAAATC
1 AG-GGGTATTTTGGTAATTTTACAAACC
*
92289559 AGGGGTATTTTGGTAATTTTACAAGCC
1 AGGGGTATTTTGGTAATTTTACAAACC
92289586 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
92289613 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
92289640 AGGGGT-TTTTGGTAATTTTAC
1 AGGGGTATTTTGGTAATTTTAC
92289661 TGATTGAGGT
Statistics
Matches: 115, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
25 1 0.01
26 25 0.22
27 88 0.77
28 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:92289692 original size:80 final size:81
Alignment explanation
Indices: 92289506--92289712 Score: 224
Period size: 80 Copynumber: 2.6 Consensus size: 81
92289496 TCTACCCTAT
* * * * * * *
92289506 AGGGGTATTTCGAT-ATTTTACAAATCGAGAGTATTTC-GATAATTTCACAAATCAGGGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAG-TAATTTTACAAACCAGGGGTATTT
92289569 TGGTAATTTTACAAGCC
65 TGGTAATTTTACAAGCC
* *
92289586 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGT-TTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTT
* **
92289650 GGTAATTTTAC-TGAT
66 GGTAATTTTACAAGCC
* * **
92289665 TGAGGTTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTT
1 AG-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTT
92289713 GTAAATCGAA
Statistics
Matches: 106, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
79 2 0.02
80 67 0.63
81 36 0.34
82 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTT
GGTAATTTTACAAGCC
Found at i:92289854 original size:80 final size:81
Alignment explanation
Indices: 92289704--92289887 Score: 280
Period size: 80 Copynumber: 2.3 Consensus size: 81
92289694 AGGGTATTTC
* *
92289704 AGTAATTTTGTAAATCGAAGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTAT
1 AGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTAT
92289769 AAATCGAGGGTAAAAT
66 AAATCGAGGGTAAAAT
* * * **
92289785 GGTAATTCTATAAATCGAGGGTAAAACGGTAATT-TGTAAATCGAGGGTAAAATGGTAATTCTAT
1 AGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTAT
*
92289849 AAATCGATGGTAAAAT
66 AAATCGAGGGTAAAAT
*
92289865 AGTAATTCTGTAAATCAAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
92289888 CTTTGGTAAT
Statistics
Matches: 92, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 63 0.68
81 29 0.32
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.29
Consensus pattern (81 bp):
AGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTAT
AAATCGAGGGTAAAAT
Found at i:92289898 original size:27 final size:27
Alignment explanation
Indices: 92289705--92289887 Score: 242
Period size: 27 Copynumber: 6.8 Consensus size: 27
92289695 GGGTATTTCA
* * *
92289705 GTAATTTTGTAAATCGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* **
92289732 ATAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
92289759 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
92289786 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
92289813 GTAATT-TGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
92289839 GTAATTCTATAAATCGATGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
92289866 GTAATTCTGTAAATCAAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
92289888 CTTTGGTAAT
Statistics
Matches: 138, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 24 0.17
27 114 0.83
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:92289924 original size:107 final size:107
Alignment explanation
Indices: 92289694--92289932 Score: 289
Period size: 107 Copynumber: 2.2 Consensus size: 107
92289684 TTGTAAACCA
*
92289694 AGGGTATTTCAGTAATTTTGTAAATCGAAGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACA
1 AGGGTATTTCAGTAA-TTTGTAAATCGAAGGTAAAACGATAATTCTATAAATCGAGGGTAAAACA
* *
92289759 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCG
65 GTAATTCTATAAATCAAGGGTAAAATGGTAATTCTACAAATCG
*** * * * * * *
92289802 AGGGTAAAACGGTAATTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGATGGTAAAATAG
1 AGGGTATTTCAGTAATTTGTAAATCGAAGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAG
* *** * *
92289867 TAATTCTGTAAATCAAGGGTACTTTGGTAATTTTACAAATTG
66 TAATTCTATAAATCAAGGGTAAAATGGTAATTCTACAAATCG
*
92289909 AGGGCATTTCAGTAATTTGGTAAA
1 AGGGTATTTCAGTAATTT-GTAAA
92289933 CTAAAGTATT
Statistics
Matches: 107, Mismatches: 23, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
107 91 0.85
108 16 0.15
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.32
Consensus pattern (107 bp):
AGGGTATTTCAGTAATTTGTAAATCGAAGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAG
TAATTCTATAAATCAAGGGTAAAATGGTAATTCTACAAATCG
Found at i:92292232 original size:16 final size:16
Alignment explanation
Indices: 92292207--92292245 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
92292197 ATGAATCGGC
92292207 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
*
92292223 AAAAGTCGAAATGCCG
1 AAAAGCCGAAATGCCG
92292239 AAAAGCC
1 AAAAGCC
92292246 AAAAGTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.46, C:0.23, G:0.23, T:0.08
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:92292515 original size:29 final size:29
Alignment explanation
Indices: 92292475--92292574 Score: 130
Period size: 29 Copynumber: 3.5 Consensus size: 29
92292465 AATGTGACTA
*
92292475 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
92292504 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* * *
92292533 GGCCTAATGGGCCATATGAATATGA-ATG
1 GGCCTAATGGGCCATATAAATGTGATTTG
*
92292561 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
92292575 GATACAGGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 15 0.24
29 47 0.76
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:92292571 original size:28 final size:29
Alignment explanation
Indices: 92292460--92292574 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
92292450 GTGAGCATGA
* * *
92292460 ATATGAATGTGA-CTAGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
92292488 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
92292517 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* * *
92292546 ATATGAATATGA-ATGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
92292574 A
1 A
92292575 GATACAGGTA
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 27 0.36
29 47 0.63
30 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:92292580 original size:57 final size:58
Alignment explanation
Indices: 92292475--92292583 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 58
92292465 AATGTGACTA
* * *
92292475 GGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAACGGGCCATATAAATATGATATGGGCCTAATGGGCCAGATACAGGTGATTTG
* * *
92292533 GGCCTAATGGGCCATATGAATATGA-ATGGGCTTAATGGGCCAGATACAGGT
1 GGCCTAACGGGCCATATAAATATGATATGGGCCTAATGGGCCAGATACAGGT
92292584 ATGTGAATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 23 0.51
58 22 0.49
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (58 bp):
GGCCTAACGGGCCATATAAATATGATATGGGCCTAATGGGCCAGATACAGGTGATTTG
Found at i:92302168 original size:23 final size:23
Alignment explanation
Indices: 92302132--92302176 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
92302122 ATTAAGGGAC
92302132 GATATACATATGTACGAATGGAT
1 GATATACATATGTACGAATGGAT
* *
92302155 GATATGCATGTGTACGAATGGA
1 GATATACATATGTACGAATGGA
92302177 CTCTGTTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.29
Consensus pattern (23 bp):
GATATACATATGTACGAATGGAT
Found at i:92313074 original size:129 final size:132
Alignment explanation
Indices: 92312860--92313151 Score: 364
Period size: 129 Copynumber: 2.2 Consensus size: 132
92312850 ACATTTGTAC
* * * *
92312860 TTTTCCTCTAAAACTTTTACACCCCTCCCATCCCACCCCACCCTCATTTACCCCAAACCCATTTA
1 TTTTCCCCCAAAACTTTTACTCCCCTCCCATCCCA--CCACCCTCATCTACCCCAAACCCATTTA
* * * *
92312925 CCCCTATTTTACTCCCCCATTTATTTTCCCCCTAAA-TTTTACTCCCCCAAAAACCTTCAAAAC-
64 CCCCCATTTTACTCCCCCATTTAATTTCCCCC-AAATTTTTAAT-CCCCAAAAACCCTCAAAACT
92312988 TTTTTA
127 TTTTTA
* * * *
92312994 TTTTCCCCGAAAACTTTTACTCCCCTCCCATCCTA-C-CCCT-ATCTACCCCAAATCCATTTCCC
1 TTTTCCCCCAAAACTTTTACTCCCCTCCCATCCCACCACCCTCATCTACCCCAAACCCATTTACC
*
92313056 CCCATTTTAC-CCCTCCATTTAATTTCCTCCAAATTTTTAATCCCCAAAAACCCTCAAAACTTTT
66 CCCATTTTACTCCC-CCATTTAATTTCCCCCAAATTTTTAATCCCCAAAAACCCTCAAAACTTTT
*
92313120 TTC
130 TTA
92313123 TTTTCCCCCAAAACTTTTACT-CCCTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCCTCCCA
92313152 CTTTCCCCCT
Statistics
Matches: 141, Mismatches: 14, Indels: 12
0.84 0.08 0.07
Matches are distributed among these distances:
128 32 0.23
129 73 0.52
130 4 0.03
131 1 0.01
134 31 0.22
ACGTcount: A:0.25, C:0.41, G:0.00, T:0.34
Consensus pattern (132 bp):
TTTTCCCCCAAAACTTTTACTCCCCTCCCATCCCACCACCCTCATCTACCCCAAACCCATTTACC
CCCATTTTACTCCCCCATTTAATTTCCCCCAAATTTTTAATCCCCAAAAACCCTCAAAACTTTTT
TA
Found at i:92313168 original size:30 final size:30
Alignment explanation
Indices: 92313124--92313182 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
92313114 ACTTTTTTCT
92313124 TTTCCCCCAAAACTTTTACT-CCCTCCCAC
1 TTTCCCCCAAAACTTTTACTCCCCTCCCAC
*
92313153 TTTCCCCCTAAAACTTTTATTCCCCTCCCA
1 TTTCCCCC-AAAACTTTTACTCCCCTCCCA
92313183 TCCCACCTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 8 0.30
30 11 0.41
31 8 0.30
ACGTcount: A:0.20, C:0.46, G:0.00, T:0.34
Consensus pattern (30 bp):
TTTCCCCCAAAACTTTTACTCCCCTCCCAC
Found at i:92316803 original size:15 final size:15
Alignment explanation
Indices: 92316785--92316813 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
92316775 CAAATCTCGA
92316785 CAAAAAAAAGGGAAT
1 CAAAAAAAAGGGAAT
92316800 CAAAAAAAAGGGAA
1 CAAAAAAAAGGGAA
92316814 CAATTTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.07, G:0.21, T:0.03
Consensus pattern (15 bp):
CAAAAAAAAGGGAAT
Found at i:92318826 original size:48 final size:45
Alignment explanation
Indices: 92318585--92318850 Score: 208
Period size: 46 Copynumber: 5.7 Consensus size: 45
92318575 ATTGTGAGCT
* *
92318585 AGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGA-GAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CACATTA-GAGGTGTC
* *
92318631 AGTGTAAGACCATGTCTGGGACATGGCATC--TACATTGAGACGAGAG-C
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACATT-AGA-G-GTGTC
* *
92318678 TAGAGTAAGACATGTCTGGGACATGCATCGGC-C-TCGT-GAAGTAAG-C
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCACAT--TAGAGGT--GTC
* * *
92318724 TAGTGTAAGACATGTCTGGGACATGCATCGGC-TATGAGATGTGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCACATTAGAGGTGTC
*
92318769 AGTGTAAGACCATGTCTGGGACATGGAATCGGCACATATAGAGGTGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACAT-TAGAGGTGTC
*
92318817 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCA
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
92318851 TTCTACCCCA
Statistics
Matches: 184, Mismatches: 16, Indels: 38
0.77 0.07 0.16
Matches are distributed among these distances:
44 11 0.06
45 22 0.12
46 62 0.34
47 32 0.17
48 57 0.31
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACATTAGAGGTGTC
Found at i:92319151 original size:47 final size:47
Alignment explanation
Indices: 92319082--92319176 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
92319072 TTGATGAATG
92319082 GTAGAGATGTTGTTATATTTATTTGCTTGCAACTTACTAAGATTTAT
1 GTAGAGATGTTGTTATATTTATTTGCTTGCAACTTACTAAGATTTAT
*
92319129 GTAGAGTTGTTGTTATATTTATTTGCTTGCAACTTACTAAGATTTAT
1 GTAGAGATGTTGTTATATTTATTTGCTTGCAACTTACTAAGATTTAT
92319176 G
1 G
92319177 CTTACTCCCT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.26, C:0.08, G:0.18, T:0.47
Consensus pattern (47 bp):
GTAGAGATGTTGTTATATTTATTTGCTTGCAACTTACTAAGATTTAT
Found at i:92322748 original size:22 final size:22
Alignment explanation
Indices: 92322707--92322748 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
92322697 GTTGATATGG
**
92322707 TCACACGGGCGTGTTGCCCTTC
1 TCACACGGGCGTGTACCCCTTC
*
92322729 TCACACGGGTGTGTACCCCT
1 TCACACGGGCGTGTACCCCT
92322749 AGGTCACGTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.12, C:0.36, G:0.26, T:0.26
Consensus pattern (22 bp):
TCACACGGGCGTGTACCCCTTC
Found at i:92353142 original size:16 final size:16
Alignment explanation
Indices: 92353123--92353176 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
92353113 GATTGATTTC
92353123 TGATATGAATGTTAAA
1 TGATATGAATGTTAAA
*
92353139 TGATATTG-AT-TT--C
1 TGATA-TGAATGTTAAA
*
92353152 TGACATGAATGTTAAA
1 TGATATGAATGTTAAA
92353168 TGATATGAA
1 TGATATGAA
92353177 ATATTTGTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 10
0.67 0.09 0.23
Matches are distributed among these distances:
12 2 0.07
13 6 0.21
14 2 0.07
15 2 0.07
16 15 0.52
17 2 0.07
ACGTcount: A:0.39, C:0.04, G:0.19, T:0.39
Consensus pattern (16 bp):
TGATATGAATGTTAAA
Found at i:92353148 original size:29 final size:29
Alignment explanation
Indices: 92353114--92353173 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
92353104 ATTGAATATG
*
92353114 ATTGATTTCTGATATGAATGTTAAATGAT
1 ATTGATTTCTGACATGAATGTTAAATGAT
92353143 ATTGATTTCTGACATGAATGTTAAATGAT
1 ATTGATTTCTGACATGAATGTTAAATGAT
92353172 AT
1 AT
92353174 GAAATATTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.35, C:0.05, G:0.17, T:0.43
Consensus pattern (29 bp):
ATTGATTTCTGACATGAATGTTAAATGAT
Found at i:92354331 original size:50 final size:50
Alignment explanation
Indices: 92354271--92354395 Score: 241
Period size: 50 Copynumber: 2.5 Consensus size: 50
92354261 TTTAATAAAT
*
92354271 AAAAGATATTAGATATGATTGAGTGTATAATAACCTTTGAATGTATTTAA
1 AAAAGTTATTAGATATGATTGAGTGTATAATAACCTTTGAATGTATTTAA
92354321 AAAAGTTATTAGATATGATTGAGTGTATAATAACCTTTGAATGTATTTAA
1 AAAAGTTATTAGATATGATTGAGTGTATAATAACCTTTGAATGTATTTAA
92354371 AAAAGTTATTAGATATGATTGAGTG
1 AAAAGTTATTAGATATGATTGAGTG
92354396 ACATTATTTT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 74 1.00
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (50 bp):
AAAAGTTATTAGATATGATTGAGTGTATAATAACCTTTGAATGTATTTAA
Found at i:92355383 original size:29 final size:31
Alignment explanation
Indices: 92355329--92355390 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
92355319 ATTTTAAAAT
* *
92355329 TATATATGAATTTTGATTTAATGTGTAATTA
1 TATATATAAATTTTAATTTAATGTGTAATTA
92355360 TATATATAAATTTTAATTT-A-GTGTAATTA
1 TATATATAAATTTTAATTTAATGTGTAATTA
92355389 TA
1 TA
92355391 CACGTGAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 11 0.38
30 1 0.03
31 17 0.59
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.52
Consensus pattern (31 bp):
TATATATAAATTTTAATTTAATGTGTAATTA
Found at i:92355639 original size:29 final size:31
Alignment explanation
Indices: 92355607--92355665 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 31
92355597 ATATAAAATT
92355607 ACATAAAACCA-AAGTTTATA-T-ATATTTAC
1 ACATAAAACCATAA-TTTATATTGATATTTAC
*
92355636 ACATTAAACCATAATTTATATTGATATTTA
1 ACATAAAACCATAATTTATATTGATATTTA
92355666 TCCCCGCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 16 0.62
30 3 0.12
31 7 0.27
ACGTcount: A:0.46, C:0.12, G:0.03, T:0.39
Consensus pattern (31 bp):
ACATAAAACCATAATTTATATTGATATTTAC
Found at i:92358504 original size:12 final size:12
Alignment explanation
Indices: 92358489--92358523 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
92358479 AACACGCGCC
92358489 CATACACACACA
1 CATACACACACA
92358501 CATACACACACA
1 CATACACACACA
*
92358513 CACACACACAC
1 CATACACACAC
92358524 TATAATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.49, C:0.46, G:0.00, T:0.06
Consensus pattern (12 bp):
CATACACACACA
Found at i:92358543 original size:2 final size:2
Alignment explanation
Indices: 92358492--92358523 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
92358482 ACGCGCCCAT
*
92358492 AC AC AC AC AC AT AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
92358524 TATAATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.47, G:0.00, T:0.03
Consensus pattern (2 bp):
AC
Found at i:92359801 original size:13 final size:13
Alignment explanation
Indices: 92359771--92359816 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
92359761 ACGATAAATT
*
92359771 ATTAATATAAAAT
1 ATTAATATAAAAA
92359784 A-TAAT-TGAAAAA
1 ATTAATAT-AAAAA
92359796 ATTAATATAAATAA
1 ATTAATATAAA-AA
92359810 ATTAATA
1 ATTAATA
92359817 AATTGTGATA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
11 1 0.04
12 9 0.32
13 8 0.29
14 10 0.36
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (13 bp):
ATTAATATAAAAA
Found at i:92360139 original size:25 final size:28
Alignment explanation
Indices: 92360079--92360139 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 28
92360069 TTATTCTATA
92360079 AATATTTTTATAAAAATTGTTATGTGTT
1 AATATTTTTATAAAAATTGTTATGTGTT
* * * *
92360107 TATCTTTTTA-AAATA-T-TTATTTGTT
1 AATATTTTTATAAAAATTGTTATGTGTT
92360132 AATATTTT
1 AATATTTT
92360140 ATTATATTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
25 14 0.52
26 1 0.04
27 4 0.15
28 8 0.30
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.59
Consensus pattern (28 bp):
AATATTTTTATAAAAATTGTTATGTGTT
Found at i:92362422 original size:131 final size:131
Alignment explanation
Indices: 92362269--92362606 Score: 330
Period size: 131 Copynumber: 2.6 Consensus size: 131
92362259 TATTGTCATC
* * * *
92362269 AATTATTAATAAAATGTGTAACAATCAAACAAGTTGTTGCTAAACGTTAAAATATTATCAGCAAC
1 AATTATTAATAAAATGTATAACAA-CAAACAAGTTATTGCTAAACGTTAAAATATTAACAACAAC
* * * **
92362334 ATTAAAATATTGTTGA-ATAAATTAATTTTATT-CTTATTCATCGCAACGACATGATTTGTCATT
65 ATTAAAATATCGTT-ATATAAATTAATTTTATTACTTATTAATAGCAACGACACAATTTGTCATT
92362397 GCG
129 GCG
* * * * * * *
92362400 AATTTTTAATAAAATTTATAACAAGACACAAGTTATTGTTAAACGTTAAAATATTAACAATAACC
1 AATTATTAATAAAATGTATAACAACAAACAAGTTATTGCTAAACGTTAAAATATTAACAACAACA
* * * * * *
92362465 TTAAAATATCGTTATGTAATTTATTTTTTTTACTTATTAATAGCAATGACACAATTTGTCATTGT
66 TTAAAATATCGTTATATAAATTAATTTTATTACTTATTAATAGCAACGACACAATTTGTCATTGC
92362530 G
131 G
* * * * * * * *
92362531 AATTATTAATAAAATATGTAACGACAAAATAAATTGTTGTTAAACGTT--AGTATTAACAAC--C
1 AATTATTAATAAAATGTATAACAAC-AAACAAGTTATTGCTAAACGTTAAAATATTAACAACAAC
92362592 -TTAAAATATCGTTAT
65 ATTAAAATATCGTTAT
92362607 GTATTTTAAT
Statistics
Matches: 171, Mismatches: 33, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
127 15 0.09
128 1 0.01
129 1 0.01
130 67 0.39
131 69 0.40
132 18 0.11
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.38
Consensus pattern (131 bp):
AATTATTAATAAAATGTATAACAACAAACAAGTTATTGCTAAACGTTAAAATATTAACAACAACA
TTAAAATATCGTTATATAAATTAATTTTATTACTTATTAATAGCAACGACACAATTTGTCATTGC
G
Found at i:92362677 original size:126 final size:127
Alignment explanation
Indices: 92362461--92362690 Score: 291
Period size: 126 Copynumber: 1.8 Consensus size: 127
92362451 TATTAACAAT
* * ** *
92362461 AACCTTAAAATATCGTTATGTAATTTATTTTTTTTACTTATTAATAGCAATGACACAATTTGTCA
1 AACCTTAAAATATCGTTATGTAATTTATATTTTCTACTTATTAATAGCAACAACACAATTTATCA
* *
92362526 TTGTGAATTATTAATAAAATATGTAACGACAAAATAAATTGTTGTTAAACGTTAGTATTAAC
66 TTGAGAAATATTAATAAAATATGTAACGACAAAATAAATTGTTGTTAAACGTTAGTATTAAC
* * * * * *
92362588 AACCTTAAAATATCGTTATGTATTTTA-ATTTTCTATTTATTGATTGCAACAACACAGTTTATTA
1 AACCTTAAAATATCGTTATGTAATTTATATTTTCTACTTATTAATAGCAACAACACAATTTATCA
* * * * *
92362652 TTGAGAAATCTTAATAAAGTTTGTAATGGCAAAATAAAT
66 TTGAGAAATATTAATAAAATATGTAACGACAAAATAAAT
92362691 GGTTAAATAT
Statistics
Matches: 85, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
126 59 0.69
127 26 0.31
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (127 bp):
AACCTTAAAATATCGTTATGTAATTTATATTTTCTACTTATTAATAGCAACAACACAATTTATCA
TTGAGAAATATTAATAAAATATGTAACGACAAAATAAATTGTTGTTAAACGTTAGTATTAAC
Found at i:92372070 original size:15 final size:14
Alignment explanation
Indices: 92372028--92372070 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
92372018 TCCATGTTCG
92372028 TATATCATAATTTCA
1 TATATCAT-ATTTCA
*
92372043 TACATCCATATTTCA
1 TATAT-CATATTTCA
92372058 TATATCATCATTT
1 TATATCAT-ATTT
92372071 TCATGTACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 3 0.12
15 18 0.75
16 3 0.12
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.47
Consensus pattern (14 bp):
TATATCATATTTCA
Found at i:92372362 original size:57 final size:57
Alignment explanation
Indices: 92372268--92372424 Score: 172
Period size: 57 Copynumber: 2.8 Consensus size: 57
92372258 TATCATATAA
* * * ** * * *
92372268 CAGGATTACTTGTCCAAGCTAAATCCTGTTTCCAACATATGCTCATAAGAGCTTAAT
1 CAGGATTACTAGTCCAGGCTAAATCCTATTTGTAACATATGCTCAGAAGAACTCAAT
*
92372325 CAGGATCACTAGTCCAGGCTAAATCCT-TTCTGTAACATATGCTCAGAAGAACTCAAT
1 CAGGATTACTAGTCCAGGCTAAATCCTATT-TGTAACATATGCTCAGAAGAACTCAAT
* * * * *
92372382 TAGGATTACCAGTCCTGGCTAAATTCTAATTGTAACATATGCT
1 CAGGATTACTAGTCCAGGCTAAATCCTATTTGTAACATATGCT
92372425 TGAGAGGGAT
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
56 2 0.02
57 81 0.96
58 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (57 bp):
CAGGATTACTAGTCCAGGCTAAATCCTATTTGTAACATATGCTCAGAAGAACTCAAT
Found at i:92382330 original size:43 final size:42
Alignment explanation
Indices: 92382274--92382434 Score: 155
Period size: 43 Copynumber: 3.8 Consensus size: 42
92382264 TCTATATGTT
*
92382274 TTATCGTGTAAGACCACGTCTAGGACGTTGGCATCGATATGTGA
1 TTAT-GTGTAAGACCACGTCTGGGACGTTGGCATC-ATATGTGA
* * * * * *
92382318 TTATGTGAAAGACTATGTCTGGGACATTGGCATCATATTTTA
1 TTATGTGTAAGACCACGTCTGGGACGTTGGCATCATATGTGA
* **
92382360 TT-CGTGTAAGACCTTGTCTGGGACAG-TGGCATCAATATGTGA
1 TTATGTGTAAGACCACGTCTGGGAC-GTTGGCATC-ATATGTGA
* * *
92382402 TTGTATGTAAGACCACGTTTGGGACGTTGGCAT
1 TTATGTGTAAGACCACGTCTGGGACGTTGGCAT
92382435 TGTACGATAT
Statistics
Matches: 94, Mismatches: 19, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
41 25 0.27
42 17 0.18
43 48 0.51
44 4 0.04
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.33
Consensus pattern (42 bp):
TTATGTGTAAGACCACGTCTGGGACGTTGGCATCATATGTGA
Found at i:92382378 original size:41 final size:41
Alignment explanation
Indices: 92382272--92382393 Score: 122
Period size: 41 Copynumber: 3.0 Consensus size: 41
92382262 TTTCTATATG
** * *
92382272 TTTTA-TCGTGTAAGACCACGTCTAGGACGTTGGCATCGATA
1 TTTTATTCGTGTAAGACCTTGTCTGGGACATTGGCATC-ATA
* * * *
92382313 TGTGATTATGTGAAAGA-CTATGTCTGGGACATTGGCATCATA
1 TTTTATT-CGTGTAAGACCT-TGTCTGGGACATTGGCATCATA
*
92382355 TTTTATTCGTGTAAGACCTTGTCTGGGACAGTGGCATCA
1 TTTTATTCGTGTAAGACCTTGTCTGGGACATTGGCATCA
92382394 ATATGTGATT
Statistics
Matches: 64, Mismatches: 13, Indels: 8
0.75 0.15 0.09
Matches are distributed among these distances:
41 29 0.45
42 12 0.19
43 23 0.36
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (41 bp):
TTTTATTCGTGTAAGACCTTGTCTGGGACATTGGCATCATA
Found at i:92382425 original size:84 final size:83
Alignment explanation
Indices: 92382272--92382434 Score: 202
Period size: 84 Copynumber: 2.0 Consensus size: 83
92382262 TTTCTATATG
* * * *
92382272 TTTTATCGTGTAAGACCACGTCTAGGACGTTGGCATCGATATGTGATTATGTGAAAGACTATGTC
1 TTTTATCGTGTAAGACCACGTCTAGGACGTTGGCATCAATATGTGATTATATGAAAGACCACGTC
92382337 TGGGACATTGGCATCATA
66 TGGGACATTGGCATCATA
** * * *
92382355 TTTTATTCGTGTAAGACCTTGTCTGGGACAG-TGGCATCAATATGTGATTGTATGTAAGACCACG
1 TTTTA-TCGTGTAAGACCACGTCTAGGAC-GTTGGCATCAATATGTGATTATATGAAAGACCACG
* *
92382419 TTTGGGACGTTGGCAT
64 TCTGGGACATTGGCAT
92382435 TGTACGATAT
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
83 5 0.07
84 61 0.91
85 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (83 bp):
TTTTATCGTGTAAGACCACGTCTAGGACGTTGGCATCAATATGTGATTATATGAAAGACCACGTC
TGGGACATTGGCATCATA
Found at i:92383468 original size:16 final size:16
Alignment explanation
Indices: 92383447--92383484 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
92383437 ATTTGTCTTA
*
92383447 GTAATGGGGTAAAATG
1 GTAATGGAGTAAAATG
92383463 GTAATGGAGTAAAATG
1 GTAATGGAGTAAAATG
92383479 GTAATG
1 GTAATG
92383485 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.34, T:0.26
Consensus pattern (16 bp):
GTAATGGAGTAAAATG
Found at i:92384769 original size:39 final size:38
Alignment explanation
Indices: 92384702--92384836 Score: 103
Period size: 39 Copynumber: 3.4 Consensus size: 38
92384692 ACCAATATGG
* *
92384702 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGTAATAGTTGA
* * *
92384741 CACCCAGTGTCTCATCGGCCTAGCCGAAGT-ACAGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGTAATAGTTGA
* * * * *
92384779 TACCCAGTACCTCATCGAATCTATCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGTAATAGT--TGA
*
92384820 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
92384837 ACTCAAGGTC
Statistics
Matches: 74, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
38 20 0.27
39 33 0.45
40 5 0.07
41 16 0.22
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGTAATAGTTGA
Found at i:92385042 original size:10 final size:10
Alignment explanation
Indices: 92385027--92385051 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
92385017 TAATTCACTT
92385027 ATTTAATTCA
1 ATTTAATTCA
92385037 ATTTAATTCA
1 ATTTAATTCA
92385047 ATTTA
1 ATTTA
92385052 CATCACTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (10 bp):
ATTTAATTCA
Found at i:92392537 original size:10 final size:10
Alignment explanation
Indices: 92392522--92392546 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
92392512 TAATTCACTT
92392522 ATTTAATTCA
1 ATTTAATTCA
92392532 ATTTAATTCA
1 ATTTAATTCA
92392542 ATTTA
1 ATTTA
92392547 CATCACTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (10 bp):
ATTTAATTCA
Found at i:92406892 original size:34 final size:34
Alignment explanation
Indices: 92406809--92406911 Score: 134
Period size: 34 Copynumber: 3.0 Consensus size: 34
92406799 GAATACATTC
* * * * *
92406809 TGGGCCTAAGCCCATATCAGTAACGGTAACAGTC
1 TGGGCCTTAGCCCATTTCAGTAACAGTAGCAGTA
92406843 TGGGCCTTAGCCCATTTCAGTAACAGTAGCAGTA
1 TGGGCCTTAGCCCATTTCAGTAACAGTAGCAGTA
* *
92406877 TGGGCCTTAGCCCATTTCAATAATAGTAGTCAGTA
1 TGGGCCTTAGCCCATTTCAGTAACAGTAG-CAGTA
92406912 CAGTAACCAT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
34 56 0.92
35 5 0.08
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (34 bp):
TGGGCCTTAGCCCATTTCAGTAACAGTAGCAGTA
Found at i:92406935 original size:18 final size:18
Alignment explanation
Indices: 92406912--92406952 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
92406902 GTAGTCAGTA
92406912 CAGTAACCA-TAATCAATG
1 CAGTAA-CAGTAATCAATG
*
92406930 CAGTAACAGTAATCACTG
1 CAGTAACAGTAATCAATG
92406948 CAGTA
1 CAGTA
92406953 TGCAAGCAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (18 bp):
CAGTAACAGTAATCAATG
Found at i:92407238 original size:23 final size:24
Alignment explanation
Indices: 92407212--92407262 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
92407202 ACCCCATGCA
*
92407212 ATGCAACATA-ATATTATACATGG-
1 ATGCAACATACATATAAT-CATGGC
92407235 ATGCAACATACATATAATCATGGC
1 ATGCAACATACATATAATCATGGC
92407259 ATGC
1 ATGC
92407263 TCAACACAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 15 0.60
24 10 0.40
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (24 bp):
ATGCAACATACATATAATCATGGC
Found at i:92407329 original size:27 final size:27
Alignment explanation
Indices: 92407296--92407486 Score: 223
Period size: 27 Copynumber: 7.3 Consensus size: 27
92407286 GAAAAAATCT
* * *
92407296 GTCATTTTACCTTATCGGGGTATTACA
1 GTCATTTTACCCTATAGGGGTATTTCA
* * * * *
92407323 GTTATTTTACCCTACAAGAGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCA
*
92407350 GTCATTCTACCCTATAGGGGTATTTCA
1 GTCATTTTACCCTATAGGGGTATTTCA
92407377 GTCATTTTACCCTATAGGGGTATTTCA
1 GTCATTTTACCCTATAGGGGTATTTCA
*
92407404 GTCATTTTACCCTATAAGGGTATTTCTA
1 GTCATTTTACCCTATAGGGGTATTTC-A
92407432 -TCA-TTT---C-ATAGGGGTATTTCA
1 GTCATTTTACCCTATAGGGGTATTTCA
* *
92407453 GTCATTTTACCCTATAAGGGTATTTCT
1 GTCATTTTACCCTATAGGGGTATTTCA
92407480 GTCATTT
1 GTCATTT
92407487 CATCACATAA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
21 1 0.01
22 15 0.11
23 4 0.03
26 4 0.03
27 113 0.82
28 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTCA
Found at i:92407462 original size:49 final size:49
Alignment explanation
Indices: 92407342--92407489 Score: 199
Period size: 49 Copynumber: 2.9 Consensus size: 49
92407332 CCCTACAAGA
* * *
92407342 GTATTTCGGTCATTCTACCCTATAGGGGTATTTC-AGTCATTTTACCCTATAGGG
1 GTATTTCAGTCATTTTACCCTATAAGGGTATTTCTA-TCA-TTT---C-ATAGGG
92407396 GTATTTCAGTCATTTTACCCTATAAGGGTATTTCTATCATTTCATAGGG
1 GTATTTCAGTCATTTTACCCTATAAGGGTATTTCTATCATTTCATAGGG
*
92407445 GTATTTCAGTCATTTTACCCTATAAGGGTATTTCTGTCATTTCAT
1 GTATTTCAGTCATTTTACCCTATAAGGGTATTTCTATCATTTCAT
92407490 CACATAAGGG
Statistics
Matches: 89, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
49 50 0.56
50 1 0.01
53 3 0.03
54 34 0.38
55 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.17, T:0.43
Consensus pattern (49 bp):
GTATTTCAGTCATTTTACCCTATAAGGGTATTTCTATCATTTCATAGGG
Found at i:92407474 original size:76 final size:79
Alignment explanation
Indices: 92407296--92407486 Score: 253
Period size: 81 Copynumber: 2.4 Consensus size: 79
92407286 GAAAAAATCT
* * * * *
92407296 GTCATTTTACCTTATCGGGGTATTACAGTTATTTTACCCTACAAGAGTATTTCGGTCATTCTACC
1 GTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTACAAGAGTATTTCGATCATTCT--C
92407361 CTATAGGGGTATTTCA
64 CTATAGGGGTATTTCA
* * *
92407377 GTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCTATCATT-T-C-
1 GTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTACAAGAGTATTTCGATCATTCTCCT
92407439 ATAGGGGTATTTCA
66 ATAGGGGTATTTCA
* *
92407453 GTCATTTTACCCTATAAGGGTATTTCTGTCATTT
1 GTCATTTTACCCTATAGGGGTATTTCAGTCATTT
92407487 CATCACATAA
Statistics
Matches: 100, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
76 46 0.46
77 1 0.01
80 1 0.01
81 52 0.52
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (79 bp):
GTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTACAAGAGTATTTCGATCATTCTCCT
ATAGGGGTATTTCA
Found at i:92407513 original size:76 final size:76
Alignment explanation
Indices: 92407363--92407503 Score: 203
Period size: 76 Copynumber: 1.9 Consensus size: 76
92407353 ATTCTACCCT
* * * * **
92407363 ATAGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTATAAGGGTATT
1 ATAGGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCAGTCATTTCACACTATAAGGGAAAA
92407428 TCTATCATTTC
66 TCTATCATTTC
*
92407439 ATAGGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCTGTCATTTCATCAC-ATAAGGGAAA
1 ATAGGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCAGTCATTTCA-CACTATAAGGGAAA
92407503 A
65 A
92407504 ATCGTCATTT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
76 55 0.96
77 2 0.04
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (76 bp):
ATAGGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCAGTCATTTCACACTATAAGGGAAAA
TCTATCATTTC
Found at i:92407524 original size:103 final size:103
Alignment explanation
Indices: 92407342--92407527 Score: 225
Period size: 103 Copynumber: 1.8 Consensus size: 103
92407332 CCCTACAAGA
* * * * ** **
92407342 GTATTTCGGTCATTCTACCCTATAGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCAGTC
1 GTATTTCAGTCATTCTACCCTATAAGGGTATTTCAGTCATTTCACCATATAGGGAAAAATCAGTC
*
92407407 ATTTTACCCTATAAGGGTATTTCTATCATTTCATAGGG
66 ATTTTACACTATAAGGGTATTTCTATCATTTCATAGGG
* *
92407445 GTATTTCAGTCATTTTACCCTATAAGGGTATTTCTGTCATTTCATCACATA-AGGGAAAAATC-G
1 GTATTTCAGTCATTCTACCCTATAAGGGTATTTCAGTCATTTCA-C-CATATAGGGAAAAATCAG
92407508 TCATTTTATCAC-ATAAGGGT
64 TCATTTTA-CACTATAAGGGT
92407528 TTAGGTACGA
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
103 56 0.81
104 10 0.14
105 3 0.04
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (103 bp):
GTATTTCAGTCATTCTACCCTATAAGGGTATTTCAGTCATTTCACCATATAGGGAAAAATCAGTC
ATTTTACACTATAAGGGTATTTCTATCATTTCATAGGG
Found at i:92410057 original size:9 final size:9
Alignment explanation
Indices: 92410045--92410093 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
92410035 TATTTCATAC
92410045 AAGCTTACT
1 AAGCTTACT
92410054 AAGCTT--T
1 AAGCTTACT
92410061 ATAGCTTACT
1 A-AGCTTACT
92410071 AAGCTT--T
1 AAGCTTACT
92410078 ATAGCTTACT
1 A-AGCTTACT
92410088 AAGCTT
1 AAGCTT
92410094 TATAACTTAC
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
7 4 0.12
8 10 0.29
9 16 0.47
10 4 0.12
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (9 bp):
AAGCTTACT
Found at i:92410110 original size:17 final size:17
Alignment explanation
Indices: 92410046--92410104 Score: 109
Period size: 17 Copynumber: 3.5 Consensus size: 17
92410036 ATTTCATACA
92410046 AGCTTACTAAGCTTTAT
1 AGCTTACTAAGCTTTAT
92410063 AGCTTACTAAGCTTTAT
1 AGCTTACTAAGCTTTAT
92410080 AGCTTACTAAGCTTTAT
1 AGCTTACTAAGCTTTAT
*
92410097 AACTTACT
1 AGCTTACT
92410105 TTGCTTATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
17 41 1.00
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.41
Consensus pattern (17 bp):
AGCTTACTAAGCTTTAT
Found at i:92411506 original size:24 final size:25
Alignment explanation
Indices: 92411457--92411506 Score: 59
Period size: 24 Copynumber: 2.0 Consensus size: 25
92411447 ACCCTTCTCA
* *
92411457 TCTCTTCACTTCTCTCTCATTTTTC
1 TCTCTTCACTTCCCTCTCATTGTTC
92411482 TCTCTTCA-TTCCCT-TCCATTGTTC
1 TCTCTTCACTTCCCTCT-CATTGTTC
92411506 T
1 T
92411507 TCATTTTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 1 0.05
24 13 0.59
25 8 0.36
ACGTcount: A:0.08, C:0.36, G:0.02, T:0.54
Consensus pattern (25 bp):
TCTCTTCACTTCCCTCTCATTGTTC
Found at i:92416107 original size:3 final size:3
Alignment explanation
Indices: 92416012--92416088 Score: 154
Period size: 3 Copynumber: 25.7 Consensus size: 3
92416002 TTCATTCCTC
92416012 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
92416060 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
92416089 GTTTTTACTA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 74 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:92417738 original size:6 final size:6
Alignment explanation
Indices: 92417727--92417818 Score: 148
Period size: 6 Copynumber: 15.3 Consensus size: 6
92417717 TCCATTTGTC
92417727 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* * * *
92417775 TTTATT TTTATT TCTATT TTTATT TTTCTT TTTCTT TTTCTT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
92417819 GAACTATATT
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 83 1.00
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTATT
Found at i:92426951 original size:39 final size:39
Alignment explanation
Indices: 92426908--92426982 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
92426898 ACACGGCTGA
* *
92426908 GACACACACTCGTGTCTCTACCCGTGTGTACAAAAACAG
1 GACACACACCCGTGTCTCTACCCGTGTGGACAAAAACAG
*
92426947 GACACACACCCGTGTGTCTACCCGTGTGGACAAAAA
1 GACACACACCCGTGTCTCTACCCGTGTGGACAAAAA
92426983 TAGGCTATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.19
Consensus pattern (39 bp):
GACACACACCCGTGTCTCTACCCGTGTGGACAAAAACAG
Found at i:92437752 original size:33 final size:33
Alignment explanation
Indices: 92437712--92437862 Score: 194
Period size: 33 Copynumber: 4.5 Consensus size: 33
92437702 TACTCTCTGT
92437712 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
* * *
92437745 TTAGTGTGCTAGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
*
92437778 TTGGTGTGCTGGTTGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
* ** * * *
92437811 TTGGTGTATTGGAGGGATTGGCTCGTGTGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
92437844 TTTGGTGTGTTTGGTTGGA
1 -TTGGTGTG-TTGGTTGGA
92437863 CTGATGATGT
Statistics
Matches: 101, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
33 87 0.86
34 7 0.07
35 7 0.07
ACGTcount: A:0.15, C:0.09, G:0.35, T:0.40
Consensus pattern (33 bp):
TTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
Found at i:92441485 original size:22 final size:22
Alignment explanation
Indices: 92441460--92441501 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
92441450 TTTTTATCCT
92441460 TTAA-AATATATAAAATTATAAA
1 TTAATAATA-ATAAAATTATAAA
*
92441482 TTAATAATAGTAAAATTATA
1 TTAATAATAATAAAATTATA
92441502 CTTTTATCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
TTAATAATAATAAAATTATAAA
Found at i:92449185 original size:39 final size:39
Alignment explanation
Indices: 92449122--92449209 Score: 117
Period size: 39 Copynumber: 2.3 Consensus size: 39
92449112 TAAAATTATC
* *
92449122 TTTAATACAATAAATATTTATTATATTTATTTGT-A-TTT
1 TTTAATATAATAAATATTTATTATATTTA-TGGTAATTTT
*
92449160 TTTAATATAATAAAATATTTGTTATATTTATGGTAATTTT
1 TTTAATATAAT-AAATATTTATTATATTTATGGTAATTTT
92449200 TTTAATATAA
1 TTTAATATAA
92449210 ATATTTTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
38 13 0.30
39 18 0.41
40 13 0.30
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.56
Consensus pattern (39 bp):
TTTAATATAATAAATATTTATTATATTTATGGTAATTTT
Found at i:92449200 original size:38 final size:39
Alignment explanation
Indices: 92449122--92449215 Score: 108
Period size: 38 Copynumber: 2.5 Consensus size: 39
92449112 TAAAATTATC
* * *
92449122 TTTAATACAAT-AAATATTTATTATATTTATTTGTATTT
1 TTTAATATAATAAAATATTTATTATATTTATTGGTAATT
*
92449160 TTTAATATAATAAAATATTTGTTATATTTA-TGGTAATT
1 TTTAATATAATAAAATATTTATTATATTTATTGGTAATT
92449198 TTT--T-TAATATAAATATTT
1 TTTAATATAATA-AAATATTT
92449216 TTAATGTGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
35 5 0.10
36 9 0.18
38 19 0.38
39 17 0.34
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.56
Consensus pattern (39 bp):
TTTAATATAATAAAATATTTATTATATTTATTGGTAATT
Found at i:92452104 original size:16 final size:15
Alignment explanation
Indices: 92452079--92452108 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
92452069 CCTTTCCCAT
92452079 AAAAAAAAAGAAAAG
1 AAAAAAAAAGAAAAG
92452094 AAAAGAAAAAGAAAA
1 AAAA-AAAAAGAAAA
92452109 CAGCTTCCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAGAAAAG
Found at i:92452727 original size:27 final size:28
Alignment explanation
Indices: 92452674--92452728 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
92452664 AAAATTCAAA
* *
92452674 TAAACATATAAAAATACATAAATATTTT
1 TAAACATATAAAAATAAATAAACATTTT
* *
92452702 TAAA-ATATAATAATAAATATACATTTT
1 TAAACATATAAAAATAAATAAACATTTT
92452729 ATATTAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (28 bp):
TAAACATATAAAAATAAATAAACATTTT
Found at i:92458858 original size:13 final size:13
Alignment explanation
Indices: 92458840--92458869 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
92458830 CTATAATAAC
*
92458840 ATAATTACTAAAT
1 ATAATTACGAAAT
92458853 ATAATTACGAAAT
1 ATAATTACGAAAT
92458866 ATAA
1 ATAA
92458870 GGGTCCAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (13 bp):
ATAATTACGAAAT
Found at i:92461407 original size:21 final size:22
Alignment explanation
Indices: 92461379--92461426 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
92461369 TATTCATCAA
92461379 TTATAT-AT-TTTTA-TGA-TT
1 TTATATAATATTTTATTGATTT
92461397 TTATATAATATTTTATTGATTT
1 TTATATAATATTTTATTGATTT
92461419 TTATATAA
1 TTATATAA
92461427 AATACTTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 6 0.23
19 2 0.08
20 5 0.19
21 3 0.12
22 10 0.38
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (22 bp):
TTATATAATATTTTATTGATTT
Found at i:92462398 original size:15 final size:16
Alignment explanation
Indices: 92462378--92462407 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92462368 AAAAATTAAT
92462378 TAATA-TAATTAACTC
1 TAATATTAATTAACTC
92462393 TAATATTAATTAACT
1 TAATATTAATTAACT
92462408 GATAATTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.43
Consensus pattern (16 bp):
TAATATTAATTAACTC
Found at i:92466442 original size:17 final size:16
Alignment explanation
Indices: 92466422--92466453 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
92466412 TCATTAAACC
92466422 TAAAAATACAAAAAAAA
1 TAAAAATA-AAAAAAAA
92466439 TAAAAATAAAAAAAA
1 TAAAAATAAAAAAAA
92466454 TCCAAACAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.12
Consensus pattern (16 bp):
TAAAAATAAAAAAAAA
Found at i:92467244 original size:21 final size:20
Alignment explanation
Indices: 92467197--92467286 Score: 65
Period size: 21 Copynumber: 4.4 Consensus size: 20
92467187 TGAATCAAGC
92467197 TAAAA-AATAAAGAATCAAT
1 TAAAACAATAAAGAATCAAT
* * *
92467216 TCAAACAATAATGAATCGATT
1 TAAAACAATAAAGAATC-AAT
* * **
92467237 TAAAACAACAAACAATTGAT
1 TAAAACAATAAAGAATCAAT
* *
92467257 TCAAAGAAGTAAAGAATCAATT
1 TAAAACAA-TAAAGAATCAA-T
92467279 TAAAACAA
1 TAAAACAA
92467287 CAATCATGAA
Statistics
Matches: 49, Mismatches: 18, Indels: 5
0.68 0.25 0.07
Matches are distributed among these distances:
19 4 0.08
20 17 0.35
21 21 0.43
22 7 0.14
ACGTcount: A:0.59, C:0.11, G:0.08, T:0.22
Consensus pattern (20 bp):
TAAAACAATAAAGAATCAAT
Found at i:92467298 original size:24 final size:23
Alignment explanation
Indices: 92467270--92467389 Score: 85
Period size: 21 Copynumber: 5.4 Consensus size: 23
92467260 AAGAAGTAAA
92467270 GAATCAATTTAAAACAACAATCAT
1 GAATCAATTTAAAACAACAAT-AT
*
92467294 GAATCAATTTAAAGA-AGCAA-AT
1 GAATCAATTTAAA-ACAACAATAT
*
92467316 -AATCGATTTAAAACAACAATAAT
1 GAATCAATTTAAAACAACAAT-AT
* * **
92467339 GAATCGATTCAAATA-AGTAA-A-
1 GAATCAATTTAAA-ACAACAATAT
*
92467360 GAATCAATTTCAAACAACAA-AT
1 GAATCAATTTAAAACAACAATAT
92467382 -AATCAATT
1 GAATCAATT
92467390 CAAAGAAGAA
Statistics
Matches: 77, Mismatches: 11, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
20 2 0.03
21 37 0.48
22 3 0.04
23 2 0.03
24 31 0.40
25 2 0.03
ACGTcount: A:0.54, C:0.13, G:0.07, T:0.25
Consensus pattern (23 bp):
GAATCAATTTAAAACAACAATAT
Found at i:92467310 original size:45 final size:43
Alignment explanation
Indices: 92467208--92467423 Score: 215
Period size: 45 Copynumber: 5.0 Consensus size: 43
92467198 AAAAAATAAA
* * *
92467208 GAATCAATTCAAACAA-TAATGAATCGATTTAAAACAACAAA-
1 GAATCAATTCAAAGAAGTAAAGAATCAATTTAAAACAACAAAT
* **
92467249 CAATTGATTCAAAGAAGTAAAGAATCAATTTAAAACAACAATCAT
1 GAATCAATTCAAAGAAGTAAAGAATCAATTTAAAACAACAA--AT
* * * *
92467294 GAATCAATTTAAAGAAGCAAATAATCGATTTAAAACAACAATAAT
1 GAATCAATTCAAAGAAGTAAAGAATCAATTTAAAACAAC-A-AAT
* * *
92467339 GAATCGATTCAAATAAGTAAAGAATCAATTTCAAACAACAAAT
1 GAATCAATTCAAAGAAGTAAAGAATCAATTTAAAACAACAAAT
* * *
92467382 -AATCAATTCAAAGAAGAAAAGAA-AAGATTTAAAATAACAAAT
1 GAATCAATTCAAAGAAGTAAAGAATCA-ATTTAAAACAACAAAT
92467424 TTAGTAACAA
Statistics
Matches: 142, Mismatches: 26, Indels: 13
0.78 0.14 0.07
Matches are distributed among these distances:
41 13 0.09
42 56 0.39
43 3 0.02
44 2 0.01
45 66 0.46
46 1 0.01
47 1 0.01
ACGTcount: A:0.56, C:0.12, G:0.09, T:0.23
Consensus pattern (43 bp):
GAATCAATTCAAAGAAGTAAAGAATCAATTTAAAACAACAAAT
Found at i:92467329 original size:87 final size:85
Alignment explanation
Indices: 92467209--92467423 Score: 254
Period size: 87 Copynumber: 2.5 Consensus size: 85
92467199 AAAAATAAAG
* * * *
92467209 AATCAATTCAAACAA-TAATGAATCGATTTAAAACAACAAA-CAATTGATTCAAAGAAGTAAAGA
1 AATCAATTCAAAGAAGAAAAGAATCGATTTAAAACAACAAATCAATCGATTCAAAGAAGTAAAGA
92467272 ATCAATTTAAAACAACAATCAT
66 ATCAATTTAAAACAACAA--AT
* * * * *
92467294 GAATCAATTTAAAGAAGCAAATAATCGATTTAAAACAACAATAATGAATCGATTCAAATAAGTAA
1 -AATCAATTCAAAGAAGAAAAGAATCGATTTAAAACAAC-A-AATCAATCGATTCAAAGAAGTAA
*
92467359 AGAATCAATTTCAAACAACAAAT
63 AGAATCAATTTAAAACAACAAAT
** *
92467382 AATCAATTCAAAGAAGAAAAGAAAAGATTTAAAATAACAAAT
1 AATCAATTCAAAGAAGAAAAGAATCGATTTAAAACAACAAAT
92467424 TTAGTAACAA
Statistics
Matches: 110, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
85 3 0.03
86 14 0.13
87 51 0.46
88 3 0.03
89 2 0.02
90 37 0.34
ACGTcount: A:0.57, C:0.12, G:0.08, T:0.23
Consensus pattern (85 bp):
AATCAATTCAAAGAAGAAAAGAATCGATTTAAAACAACAAATCAATCGATTCAAAGAAGTAAAGA
ATCAATTTAAAACAACAAAT
Found at i:92468856 original size:19 final size:18
Alignment explanation
Indices: 92468822--92468880 Score: 52
Period size: 19 Copynumber: 3.4 Consensus size: 18
92468812 TATTTTTAAA
* *
92468822 ATTAAAAATCTTTAAAATT
1 ATTAAAAATATAT-AAATT
92468841 ATTAAAAATATATAAATT
1 ATTAAAAATATATAAATT
*
92468859 -TTATAAA-A-ATAAATT
1 ATTAAAAATATATAAATT
*
92468874 TTTAAAA
1 ATTAAAA
92468881 TTTTAAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
15 7 0.20
16 6 0.17
17 6 0.17
18 5 0.14
19 11 0.31
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTAAAAATATATAAATT
Found at i:92474233 original size:19 final size:18
Alignment explanation
Indices: 92474200--92474237 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
92474190 GCAAACATAT
92474200 AATATATTTTATAATTAAA
1 AATATATTTTATAA-TAAA
92474219 AATAT-TTTTATTAATAAA
1 AATATATTTTA-TAATAAA
92474237 A
1 A
92474238 CTGGCTAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
AATATATTTTATAATAAA
Found at i:92478161 original size:47 final size:46
Alignment explanation
Indices: 92478093--92478253 Score: 179
Period size: 47 Copynumber: 3.5 Consensus size: 46
92478083 TGTGTGTGCT
* **
92478093 AGTGTAAGGCA-GTCTGGGACATGCATCGGCCACATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGTA-AGCC
* *
92478138 AGTGTAAGACCATGTTTGGGACATGCATCGGCCTCAAGATGTAAGCC
1 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCACAAGATGTAAGCC
* * *
92478185 AGTGTAAGACATGTCTGGGACATGCATCAGCCATGAA-ATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-CAAGATGTAAGCC
92478229 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
92478254 GCAACGGCAC
Statistics
Matches: 101, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
44 11 0.11
45 23 0.23
46 27 0.27
47 39 0.39
48 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGTAAGCC
Found at i:92482194 original size:13 final size:13
Alignment explanation
Indices: 92482176--92482213 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
92482166 GCCCAAACGT
92482176 CGAAATTTTCAAA
1 CGAAATTTTCAAA
92482189 CGAAATTTTCAAA
1 CGAAATTTTCAAA
*
92482202 TGAAATTTTCAA
1 CGAAATTTTCAA
92482214 TAAATCATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.34
Consensus pattern (13 bp):
CGAAATTTTCAAA
Found at i:92483131 original size:26 final size:26
Alignment explanation
Indices: 92483095--92483146 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
92483085 TATCGTTCTA
92483095 TTGTATCCAAGTCTTCTAAGAAACAT
1 TTGTATCCAAGTCTTCTAAGAAACAT
92483121 TTGTATCCAAGTCTTCTAAGAAACAT
1 TTGTATCCAAGTCTTCTAAGAAACAT
92483147 ACACTTCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (26 bp):
TTGTATCCAAGTCTTCTAAGAAACAT
Found at i:92483680 original size:15 final size:15
Alignment explanation
Indices: 92483640--92483677 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
92483630 GAAGCCCAGA
92483640 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
92483655 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
92483670 AT-AAGAAA
1 ATAAAGAAA
92483678 ATCTAATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.61, C:0.11, G:0.13, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:92504821 original size:13 final size:13
Alignment explanation
Indices: 92504803--92504827 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92504793 AGGCCGTGTG
92504803 AGGGACACGGGCC
1 AGGGACACGGGCC
92504816 AGGGACACGGGC
1 AGGGACACGGGC
92504828 GTGTGCTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGGGACACGGGCC
Found at i:92505367 original size:21 final size:21
Alignment explanation
Indices: 92505341--92505463 Score: 86
Period size: 21 Copynumber: 5.9 Consensus size: 21
92505331 AACGGAAGCA
* *
92505341 CATAAGTGCTAAACAGAAACC
1 CATAAGAGTTAAACAGAAACC
* * * * * *
92505362 CATAAGGGTTGAGCGGAAGCT
1 CATAAGAGTTAAACAGAAACC
* *
92505383 CATAAGAGCTAAACGGAAACC
1 CATAAGAGTTAAACAGAAACC
* * * *
92505404 CATAAGGGTTAAATAGAAGCT
1 CATAAGAGTTAAACAGAAACC
* *
92505425 CGTAAGAGTTGAACAGAAACC
1 CATAAGAGTTAAACAGAAACC
92505446 CATCAAG-GTTAAACAGAA
1 CAT-AAGAGTTAAACAGAA
92505464 GCTCAATAGA
Statistics
Matches: 74, Mismatches: 27, Indels: 2
0.72 0.26 0.02
Matches are distributed among these distances:
21 71 0.96
22 3 0.04
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.16
Consensus pattern (21 bp):
CATAAGAGTTAAACAGAAACC
Found at i:92505423 original size:42 final size:42
Alignment explanation
Indices: 92505335--92505527 Score: 174
Period size: 42 Copynumber: 4.6 Consensus size: 42
92505325 AGGCTGAACG
* * * * *
92505335 GAAGCACATAAGTGCTAAACAGAAACCCATAAGGGTTGAGCG
1 GAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAACA
* *
92505377 GAAGCTCATAAGAGCTAAACGGAAACCCATAAGGGTTAAATA
1 GAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAACA
* * *
92505419 GAAGCTCGTAAGAGTTGAACAGAAACCCATCAA-GGTTAAACA
1 GAAGCTCATAAGAGCTAAACAGAAACCCAT-AAGGGTTAAACA
* * * ** *
92505461 GAAGCTCA-ATAGAGCTAAACAAAAACTCATATGAATTAAATA
1 GAAGCTCATA-AGAGCTAAACAGAAACCCATAAGGGTTAAACA
* * * *
92505503 GAAGCTCGTGAGGGCTAAACGGAAA
1 GAAGCTCATAAGAGCTAAACAGAAA
92505528 GCAAACACAA
Statistics
Matches: 121, Mismatches: 26, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
41 2 0.02
42 117 0.97
43 2 0.02
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.17
Consensus pattern (42 bp):
GAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAACA
Found at i:92505476 original size:84 final size:84
Alignment explanation
Indices: 92505352--92505511 Score: 207
Period size: 84 Copynumber: 1.9 Consensus size: 84
92505342 ATAAGTGCTA
* * * ** **
92505352 AACAGAAACCCATAAGGGTTGAGCGGAAGCTCATAAGAGCTAAACGGAAACCCATAAGGGTTAAA
1 AACAGAAACCCATAAGGGTTAAACAGAAGCTCATAAGAGCTAAACAAAAACCCATAAGAATTAAA
92505417 TAGAAGCTCGTAAGAGTTG
66 TAGAAGCTCGTAAGAGTTG
* *
92505436 AACAGAAACCCATCAA-GGTTAAACAGAAGCTCA-ATAGAGCTAAACAAAAACTCATATGAATTA
1 AACAGAAACCCAT-AAGGGTTAAACAGAAGCTCATA-AGAGCTAAACAAAAACCCATAAGAATTA
92505499 AATAGAAGCTCGT
64 AATAGAAGCTCGT
92505512 GAGGGCTAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
83 1 0.02
84 62 0.95
85 2 0.03
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.17
Consensus pattern (84 bp):
AACAGAAACCCATAAGGGTTAAACAGAAGCTCATAAGAGCTAAACAAAAACCCATAAGAATTAAA
TAGAAGCTCGTAAGAGTTG
Found at i:92515084 original size:40 final size:40
Alignment explanation
Indices: 92514993--92515156 Score: 244
Period size: 40 Copynumber: 4.2 Consensus size: 40
92514983 CGAATGATAA
*
92514993 CGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAA-TCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
92515032 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
92515072 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * * *
92515112 CGAAGGCATTTGAGCGAG-TAGCTATAT-CTGGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
92515151 CGAAGG
1 CGAAGG
92515157 TACTTGGTCT
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
39 52 0.44
40 65 0.56
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:92515152 original size:79 final size:79
Alignment explanation
Indices: 92514993--92515156 Score: 242
Period size: 79 Copynumber: 2.1 Consensus size: 79
92514983 CGAATGATAA
* *
92514993 CGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAATCCCGAAGGCATTTGTGCGAGTTACTATA
1 CGAAGGCATTTGTGCAAGCTACTATATCCGGGCTAATCCCGAAGGCATTTGAGCGAGTTACTATA
*
92515058 TCCGGGCTAAGTCC
66 TCCGGGCTAAATCC
*
92515072 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTA
1 CGAAGGCATTTGTGCAAGCTACTATATCCGGGCTAA-TCCCGAAGGCATTTGAGCGAGTTA-CTA
* *
92515136 TAT-CTGGTTAAATCC
64 TATCCGGGCTAAATCC
92515151 CGAAGG
1 CGAAGG
92515157 TACTTGGTCT
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
79 51 0.66
80 26 0.34
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CGAAGGCATTTGTGCAAGCTACTATATCCGGGCTAATCCCGAAGGCATTTGAGCGAGTTACTATA
TCCGGGCTAAATCC
Found at i:92516797 original size:47 final size:48
Alignment explanation
Indices: 92516724--92516847 Score: 143
Period size: 47 Copynumber: 2.7 Consensus size: 48
92516714 AGGGTAAGAC
* *
92516724 GCCGATGCCATGTCCTAGACAC-GGTCTTACATTGACTCAT-ATCTC-AA
1 GCCGATGCCATGTCCCAGAC-CTGGTCTTACACTGACT-ATCATCTCGAA
* *
92516771 GTCGATGCCATGTCCCAGACCTGGTCTTACACTGACTATCATCTCGTA
1 GCCGATGCCATGTCCCAGACCTGGTCTTACACTGACTATCATCTCGAA
*
92516819 GCCGATG-CATGT-CCAGACAT-GTCTTACAC
1 GCCGATGCCATGTCCCAGACCTGGTCTTACAC
92516848 AAGCTTACGT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
45 9 0.13
46 10 0.15
47 42 0.62
48 7 0.10
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACCTGGTCTTACACTGACTATCATCTCGAA
Found at i:92522650 original size:26 final size:25
Alignment explanation
Indices: 92522557--92522676 Score: 172
Period size: 24 Copynumber: 4.8 Consensus size: 25
92522547 GAGGAAGTGC
*
92522557 AAAAGGGCTATGCCCCAG-TTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
92522581 AAAAGGGCTTTGCCCCAG-TTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
92522605 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
92522630 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGC-TTTGCCCCAGTTTACCG
92522656 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGC-TTTGCCCCAGTT
92522677 ATTAAAAGAG
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
24 40 0.45
25 14 0.16
26 35 0.39
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:92522689 original size:25 final size:26
Alignment explanation
Indices: 92522567--92522689 Score: 102
Period size: 24 Copynumber: 4.9 Consensus size: 26
92522557 AAAAGGGCTA
*
92522567 TGCCCCAG-TTACCGAAAAG-GGC-TT
1 TGCCCCAGTTTATC-AAAAGAGGCTTT
*
92522591 TGCCCCAG-TTACCGAAAAG-GGC-TT
1 TGCCCCAGTTTATC-AAAAGAGGCTTT
* *
92522615 TGCCCTAGTTTACCGAAAAG-GGCTTT
1 TGCCCCAGTTTATC-AAAAGAGGCTTT
92522641 TGCCCCAGTTTATCAAAA-AGGGCTTT
1 TGCCCCAGTTTATCAAAAGA-GGCTTT
*
92522667 TGCCCCAG-TTATTAAAAGAGGCT
1 TGCCCCAGTTTATCAAAAGAGGCT
92522690 AGGCCTCCAG
Statistics
Matches: 90, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
24 31 0.34
25 30 0.33
26 29 0.32
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
TGCCCCAGTTTATCAAAAGAGGCTTT
Found at i:92522947 original size:31 final size:31
Alignment explanation
Indices: 92522896--92522979 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
92522886 TTGTTACAGT
*
92522896 AAAGGCTTCGACCCAGTGATATGAATAATGA
1 AAAGGCTTCGACCCAATGATATGAATAATGA
* * *
92522927 AAAGACTTCGGCCCAATGATATGAATAATGT
1 AAAGGCTTCGACCCAATGATATGAATAATGA
92522958 AAAGGCTTCGACCCAAT-ATATG
1 AAAGGCTTCGACCCAATGATATG
92522980 CTGAGATTGA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 5 0.11
31 42 0.89
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGACCCAATGATATGAATAATGA
Found at i:92528957 original size:47 final size:48
Alignment explanation
Indices: 92528885--92529154 Score: 220
Period size: 46 Copynumber: 5.8 Consensus size: 48
92528875 GGTAAGACAT
** * *
92528885 TGATGCCATGTCGTAGACATAGTCTTACTCTGGCTCAT-ATCTC-AAGT
1 TGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTCGAAGC
* ** *
92528932 TGATGCCATGTCCCAGACCTGGTCTTACACTAACT-ATCATCTCGTAGC
1 TGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTCGAAGC
* * * * * *
92528980 CGATG-CATATTCCAGACATGTCTTACACTGGCTTA-CGTCTCGAGGC
1 TGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCGAAGC
*
92529026 TGATG-CATGTCCCAGACATGTCTTACACTAGCTC-TCATCTC-AATGC
1 TGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCGAA-GC
* * * **
92529072 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTC-TCATAAT-GTGGC
1 TGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCAT-CTCGAAGC
* *
92529120 CGATG-CATGTCCCAGACATGTCTTACACTAGCTCA
1 TGATGCCATGTCCCAGACATGTCTTACACTGGCTCA
92529155 CACACGAATG
Statistics
Matches: 180, Mismatches: 33, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
45 1 0.01
46 76 0.42
47 71 0.39
48 31 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
TGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCGAAGC
Found at i:92529132 original size:94 final size:92
Alignment explanation
Indices: 92528933--92529153 Score: 259
Period size: 94 Copynumber: 2.4 Consensus size: 92
92528923 ATCTCAAGTT
* * * * * *
92528933 GATGCCATGTCCCAGACCTGGTCTTACACTAACTATCATCTCGTAGCCGATGCATATTCCAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCATAGCCGATGCATATCCCAAACA
* * *
92528998 TGTCTTACACTGGCTTACGTCTCGAGGCT
64 TGTCTTACACTGGCTTACATATCGAGGCC
*
92529027 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCA-ATGCCGATGCCATGTCCCAAACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCATA-GCCGATG-CATATCCCAAACA
*
92529091 TGGTCTTACACTGGCTCT-CATAAT-GTGGCC
64 T-GTCTTACACTGGCT-TACAT-ATCGAGGCC
92529121 GATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTC
92529154 ACACACGAAT
Statistics
Matches: 111, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
91 1 0.01
92 27 0.24
93 24 0.22
94 57 0.51
95 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCATAGCCGATGCATATCCCAAACATG
TCTTACACTGGCTTACATATCGAGGCC
Found at i:92529143 original size:140 final size:141
Alignment explanation
Indices: 92528885--92529148 Score: 338
Period size: 140 Copynumber: 1.9 Consensus size: 141
92528875 GGTAAGACAT
** * * ** *
92528885 TGATGCCATGTCGTAGACATAGTCTTACTCTGGCTCATATCTCAAGTTGATGCCATGTCCCAGAC
1 TGATGCCATGTCCCAGACATAGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAAAC
* * *
92528950 CTGGTCTTACACTAACTATCATCTCGTAGCCGATGCATATTCCAGACATGTCTTACACTGGCTTA
66 ATGGTCTTACACTAACTATCATATCGTAGCCGATGCATATCCCAGACATGTCTTACACTGGCTTA
92529015 CGTCTCGAGGC
131 CGTCTCGAGGC
92529026 TGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCATCTCAATGCCGATGCCATGTCCCAA
1 TGATGCCATGTCCCAGACATAGTCTTACACTAGCTCAT-ATCTCAA-GCCGATGCCATGTCCCAA
** * * *
92529088 ACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACATGTCTTACACT
64 ACATGGTCTTACACTAACTATCAT-ATCGTAGCCGATGCATATCCCAGACATGTCTTACACT
92529149 AGCTCACACA
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
138 1 0.01
139 20 0.19
140 78 0.74
141 6 0.06
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (141 bp):
TGATGCCATGTCCCAGACATAGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAAAC
ATGGTCTTACACTAACTATCATATCGTAGCCGATGCATATCCCAGACATGTCTTACACTGGCTTA
CGTCTCGAGGC
Found at i:92539341 original size:73 final size:73
Alignment explanation
Indices: 92539230--92539396 Score: 300
Period size: 73 Copynumber: 2.3 Consensus size: 73
92539220 GTAGCTCTAA
* *
92539230 AGAGCCATTAATTAGGAAGCTTCGGATAGCTTTATGTCGGGAAATTCAAGCAAGCTATATCGGGA
1 AGAGCCATTAATCAGGAAGCTTCAGATAGCTTTATGTCGGGAAATTCAAGCAAGCTATATCGGGA
92539295 AGCTCTGG
66 AGCTCTGG
92539303 AGAGCCATTAATCAGGAAGCTTCAGATAG-TCTTATGTCGGGAAATTCAAGCAAGCTATATCGGG
1 AGAGCCATTAATCAGGAAGCTTCAGATAGCT-TTATGTCGGGAAATTCAAGCAAGCTATATCGGG
92539367 AAGCTCTGG
65 AAGCTCTGG
92539376 AGAGCCATTAATCAGGAAGCT
1 AGAGCCATTAATCAGGAAGCT
92539397 CATAAAGAGC
Statistics
Matches: 91, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
72 1 0.01
73 90 0.99
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (73 bp):
AGAGCCATTAATCAGGAAGCTTCAGATAGCTTTATGTCGGGAAATTCAAGCAAGCTATATCGGGA
AGCTCTGG
Found at i:92539433 original size:26 final size:25
Alignment explanation
Indices: 92539361--92539435 Score: 78
Period size: 26 Copynumber: 2.9 Consensus size: 25
92539351 AGCAAGCTAT
* * *
92539361 ATCGGGAAGCTCTGGAGAGCCATTA
1 ATCGGGAAGCTCAGAAAAGCCATTA
* * *
92539386 ATCAGGAAGCTCATAAAGAGCCTTTA
1 ATCGGGAAGCTCAGAAA-AGCCATTA
92539412 ATCGGGAAGCTCACGAAAAGCCAT
1 ATCGGGAAGCTCA-GAAAAGCCAT
92539436 ATATTGGGAC
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
25 12 0.31
26 24 0.62
27 3 0.08
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (25 bp):
ATCGGGAAGCTCAGAAAAGCCATTA
Found at i:92553189 original size:26 final size:27
Alignment explanation
Indices: 92553160--92553247 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
92553150 AAAAACAGTT
* * *
92553160 ATTTTACCCTAC-AGGGTATGTCGGTC
1 ATTTTACACTACAAGGGTATGTCGATA
*
92553186 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATGTCGATA
* * * *
92553213 ATTTTACA-AATCGAGGGTATTTCGGTA
1 ATTTTACACTA-CAAGGGTATGTCGATA
92553240 ATTTTACA
1 ATTTTACA
92553248 AATCGAGGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 12 0.23
27 41 0.77
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATGTCGATA
Done.