Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 284 of 325
Found at i:92841916 original size:6 final size:6
Alignment explanation
Indices: 92841870--92841909 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
92841860 GTGTATCTCA
*
92841870 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT- ATTTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
92841910 TTATTTTCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:92843401 original size:26 final size:27
Alignment explanation
Indices: 92843346--92843422 Score: 70
Period size: 26 Copynumber: 2.9 Consensus size: 27
92843336 CAAACCCAAA
* *
92843346 AAAAACAAAAGAAAATGAA-AAGAAAC
1 AAAAAGAAAAGAAGATGAATAAGAAAC
* *
92843372 AAAAAGAAAGGAAGATGAATAA-AAAT
1 AAAAAGAAAAGAAGATGAATAAGAAAC
*
92843398 AAAAAGGAAATGAAGTAT-AATAAGA
1 AAAAA-GAAAAGAAG-ATGAATAAGA
92843423 CGTCATGTGG
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
26 24 0.57
27 15 0.36
28 3 0.07
ACGTcount: A:0.70, C:0.03, G:0.17, T:0.10
Consensus pattern (27 bp):
AAAAAGAAAAGAAGATGAATAAGAAAC
Found at i:92845809 original size:15 final size:15
Alignment explanation
Indices: 92845785--92845821 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
92845775 AATGGCAGGA
* *
92845785 GGAGGGGGTGGTGGT
1 GGAGGAGGTGGTGGC
92845800 GGAGGAGGTGGTGGC
1 GGAGGAGGTGGTGGC
92845815 GGAGGAG
1 GGAGGAG
92845822 CTGCACCACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.14, C:0.03, G:0.70, T:0.14
Consensus pattern (15 bp):
GGAGGAGGTGGTGGC
Found at i:92845821 original size:18 final size:18
Alignment explanation
Indices: 92845781--92845821 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
92845771 AAAAAATGGC
*
92845781 AGGAGGAGGGGGTGGTGG
1 AGGAGGAGGGGGTGGCGG
* *
92845799 TGGAGGAGGTGGTGGCGG
1 AGGAGGAGGGGGTGGCGG
92845817 AGGAG
1 AGGAG
92845822 CTGCACCACC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.02, G:0.68, T:0.12
Consensus pattern (18 bp):
AGGAGGAGGGGGTGGCGG
Found at i:92852987 original size:18 final size:19
Alignment explanation
Indices: 92852954--92852991 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
92852944 AGACTCCAGG
*
92852954 TCTGATTCTTTTCAATCAT
1 TCTGATTCTCTTCAATCAT
92852973 TCTGATT-TCTTCAATCAT
1 TCTGATTCTCTTCAATCAT
92852991 T
1 T
92852992 GCTTGCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.53
Consensus pattern (19 bp):
TCTGATTCTCTTCAATCAT
Found at i:92858580 original size:13 final size:12
Alignment explanation
Indices: 92858555--92858589 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
92858545 GGTTTGCTTC
92858555 TCATGTTTATAA
1 TCATGTTTATAA
*
92858567 TCATGTTTGTTAA
1 TCATGTTT-ATAA
92858580 TCATGTTTAT
1 TCATGTTTAT
92858590 CTTATGTCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.26, C:0.09, G:0.11, T:0.54
Consensus pattern (12 bp):
TCATGTTTATAA
Found at i:92863074 original size:15 final size:16
Alignment explanation
Indices: 92863044--92863084 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
92863034 AATTATTTAA
*
92863044 TATTTATACTAAAATT
1 TATTTATACAAAAATT
92863060 TATTTATA-AAAAATT
1 TATTTATACAAAAATT
92863075 TATTTA-ACAA
1 TATTTATACAA
92863085 TTGAATCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 1 0.04
15 14 0.61
16 8 0.35
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (16 bp):
TATTTATACAAAAATT
Found at i:92869404 original size:21 final size:20
Alignment explanation
Indices: 92869366--92869404 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
92869356 AATACAATAT
*
92869366 TGAAAGATTGAATAGGAAAA
1 TGAAAGATTCAATAGGAAAA
*
92869386 TGAAACGATTCAATCGGAA
1 TGAAA-GATTCAATAGGAA
92869405 GAAAAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.49, C:0.08, G:0.23, T:0.21
Consensus pattern (20 bp):
TGAAAGATTCAATAGGAAAA
Found at i:92870117 original size:22 final size:22
Alignment explanation
Indices: 92870087--92870137 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
92870077 GACTATGGAC
*
92870087 ATTTATTGGATTTTTATTTTGC-G
1 ATTT-TTGGATTTTTAATTT-CTG
*
92870110 ATTTTTGGTTTTTTAATTTCTG
1 ATTTTTGGATTTTTAATTTCTG
92870132 ATTTTT
1 ATTTTT
92870138 TTTTAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 20 0.80
23 4 0.16
ACGTcount: A:0.16, C:0.04, G:0.14, T:0.67
Consensus pattern (22 bp):
ATTTTTGGATTTTTAATTTCTG
Found at i:92878744 original size:9 final size:9
Alignment explanation
Indices: 92878730--92878797 Score: 84
Period size: 9 Copynumber: 7.6 Consensus size: 9
92878720 ATAAGTATAA
*
92878730 AATTAATCG
1 AATTAACCG
92878739 AATTAACCG
1 AATTAACCG
* *
92878748 AAATAATCG
1 AATTAACCG
92878757 AATTAACCG
1 AATTAACCG
*
92878766 AATTACCCG
1 AATTAACCG
92878775 AATT-ACCTG
1 AATTAACC-G
92878784 AATTAACCG
1 AATTAACCG
92878793 AATTA
1 AATTA
92878798 TTTGTATAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
8 2 0.04
9 45 0.90
10 3 0.06
ACGTcount: A:0.44, C:0.19, G:0.10, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:92879272 original size:36 final size:38
Alignment explanation
Indices: 92879189--92879284 Score: 112
Period size: 37 Copynumber: 2.6 Consensus size: 38
92879179 CCCTATATGT
*
92879189 GTGGAA-TTGAATTGAATAT-TGACTTGAAAATGGAAAA
1 GTGGAATTTGAATTGAAT-TGTGACTTGAAAATGAAAAA
*
92879226 GTGGATTTTGAATTGAATTGTGA-TTGAAAGA-GAAAAA
1 GTGGAATTTGAATTGAATTGTGACTTGAAA-ATGAAAAA
*
92879263 GT-GAATTTGAATTGAAATGTGA
1 GTGGAATTTGAATTGAATTGTGA
92879285 ATTTGGAGAC
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
36 18 0.35
37 19 0.37
38 15 0.29
ACGTcount: A:0.41, C:0.01, G:0.26, T:0.32
Consensus pattern (38 bp):
GTGGAATTTGAATTGAATTGTGACTTGAAAATGAAAAA
Found at i:92884715 original size:154 final size:154
Alignment explanation
Indices: 92884435--92884735 Score: 489
Period size: 154 Copynumber: 2.0 Consensus size: 154
92884425 AGGTTGGAGA
* *
92884435 TAGTATTCAGGTAAAATTTTCTCAACAATGTCGACTTTAAAATTTAAACTTAATTCAAATACTTA
1 TAGTATTCAAGTAAAATTTTCTCAACAATGTCGACTTCAAAATTTAAACTTAATTCAAATACTTA
* *
92884500 TAGAAGAAATTCACTTTCACTTTTTCTAATCACTTGTTAATTGTTTTGGTGTATTTTTGTTAATT
66 TAGAAGAAATTCAATTTCACTTTTTCTAACCACTTGTTAATTGTTTTGGTGTATTTTTGTTAATT
*
92884565 GTTATTATTCATGTTATTAATTGT
131 GTTATCATTCATGTTATTAATTGT
* *
92884589 TAGTATTCAAGTAAAATTTTCTTAACAATGTCGACTTCAAGATTTAAACTTAA-TCTAAATACTT
1 TAGTATTCAAGTAAAATTTTCTCAACAATGTCGACTTCAAAATTTAAACTTAATTC-AAATACTT
* *
92884653 GT-GAAAGAAATTCAATTTCACTTTTTCTAACCACTTGTTAATTGTTTTGGTGTGTTTTTGTTAA
65 ATAG-AAGAAATTCAATTTCACTTTTTCTAACCACTTGTTAATTGTTTTGGTGTATTTTTGTTAA
92884717 TTGTTATCATTCATGTTAT
129 TTGTTATCATTCATGTTAT
92884736 ATATATTTTG
Statistics
Matches: 136, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
153 3 0.02
154 133 0.98
ACGTcount: A:0.31, C:0.12, G:0.11, T:0.47
Consensus pattern (154 bp):
TAGTATTCAAGTAAAATTTTCTCAACAATGTCGACTTCAAAATTTAAACTTAATTCAAATACTTA
TAGAAGAAATTCAATTTCACTTTTTCTAACCACTTGTTAATTGTTTTGGTGTATTTTTGTTAATT
GTTATCATTCATGTTATTAATTGT
Found at i:92885746 original size:6 final size:6
Alignment explanation
Indices: 92885737--92885773 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
92885727 ATGCAAATTA
92885737 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT A
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT A
92885774 CCCTTATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAATAT
Found at i:92894932 original size:31 final size:31
Alignment explanation
Indices: 92894897--92894958 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
92894887 AATGCTTAGT
*
92894897 AAGTTCATATAACTGGGAATTTAACTTACCA
1 AAGTTCATATAACTGGAAATTTAACTTACCA
92894928 AAGTTCATATAACTGGAAATTTAACTTACCA
1 AAGTTCATATAACTGGAAATTTAACTTACCA
92894959 TTCATTTCCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.32
Consensus pattern (31 bp):
AAGTTCATATAACTGGAAATTTAACTTACCA
Found at i:92895531 original size:25 final size:24
Alignment explanation
Indices: 92895493--92895545 Score: 79
Period size: 25 Copynumber: 2.2 Consensus size: 24
92895483 AAGTTCAAGC
92895493 GAGCCATATCAGGAAGCTCATAAA
1 GAGCCATATCAGGAAGCTCATAAA
* *
92895517 GAGCCTATATTAGGATGCTCATAAA
1 GAGCC-ATATCAGGAAGCTCATAAA
92895542 GAGC
1 GAGC
92895546 TGCAGTATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.21
Consensus pattern (24 bp):
GAGCCATATCAGGAAGCTCATAAA
Found at i:92896078 original size:12 final size:12
Alignment explanation
Indices: 92896061--92896085 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92896051 ACTCATTCAC
92896061 ATCTTAGGCAAA
1 ATCTTAGGCAAA
92896073 ATCTTAGGCAAA
1 ATCTTAGGCAAA
92896085 A
1 A
92896086 GTACAATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (12 bp):
ATCTTAGGCAAA
Found at i:92897525 original size:60 final size:59
Alignment explanation
Indices: 92897396--92897534 Score: 140
Period size: 60 Copynumber: 2.3 Consensus size: 59
92897386 TTTAGTGTTA
* * *
92897396 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
1 ACTGGGCC-TATCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTAT
* * *
92897457 ACTAGGCCTATCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGT-C-GAGATAT
1 ACTGGGCCTATCCCATATCAATATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TAT
*
92897517 ATTGGGCCT-TGCCCATAT
1 ACTGGGCCTAT-CCCATAT
92897535 TGACACAGTT
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
59 4 0.06
60 48 0.73
61 11 0.17
62 3 0.05
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (59 bp):
ACTGGGCCTATCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGTACAGAGTAT
Found at i:92901706 original size:22 final size:22
Alignment explanation
Indices: 92901675--92901719 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
92901665 AAGATATAAT
* **
92901675 GCCTTTCTCATTAATGGATTCA
1 GCCTTCCTCATTAAAAGATTCA
92901697 GCCTTCCTCATTAAAAGATTCA
1 GCCTTCCTCATTAAAAGATTCA
92901719 G
1 G
92901720 GTTTGATACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (22 bp):
GCCTTCCTCATTAAAAGATTCA
Found at i:92904366 original size:43 final size:44
Alignment explanation
Indices: 92904305--92904399 Score: 122
Period size: 43 Copynumber: 2.2 Consensus size: 44
92904295 AAGTCTACCC
* * *
92904305 ACAAACGCCATTATAGAACATGATCTTTAGCGGCTCTAT-TA-CT
1 ACAAACGCCACTAAAGAACATGATCTTTAGCGGCGCT-TCTAGCT
* *
92904348 ACAAACGCCGCTAAAGAACATGATCTTTTGCGGCGCTTCTAGCT
1 ACAAACGCCACTAAAGAACATGATCTTTAGCGGCGCTTCTAGCT
92904392 ACAAACGC
1 ACAAACGC
92904400 TACAACATGC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 1 0.02
43 34 0.76
44 10 0.22
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (44 bp):
ACAAACGCCACTAAAGAACATGATCTTTAGCGGCGCTTCTAGCT
Found at i:92904670 original size:16 final size:16
Alignment explanation
Indices: 92904644--92904687 Score: 63
Period size: 16 Copynumber: 2.7 Consensus size: 16
92904634 TTTATAAATG
92904644 AAATAAAATTTATT-TT
1 AAAT-AAATTTATTATT
92904660 CAAATAAATTTATTATT
1 -AAATAAATTTATTATT
92904677 AAATAAATTTA
1 AAATAAATTTA
92904688 ATAAATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 20 0.77
17 6 0.23
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
AAATAAATTTATTATT
Found at i:92905439 original size:26 final size:27
Alignment explanation
Indices: 92905357--92905439 Score: 63
Period size: 26 Copynumber: 3.3 Consensus size: 27
92905347 ATATCAAAAA
*
92905357 TATTATTAAATTATATATT--T-TTATT
1 TATTATTAAAATATAT-TTAATATTATT
* * *
92905382 T-TTATTAAATTATATTTAATAATAAT
1 TATTATTAAAATATATTTAATATTATT
92905408 TA-TATTAAAATATGA-TTAA-ATTATT
1 TATTATTAAAATAT-ATTTAATATTATT
92905433 TATTATT
1 TATTATT
92905440 TATTTATTAA
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
23 2 0.04
24 14 0.30
25 8 0.17
26 22 0.47
27 1 0.02
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (27 bp):
TATTATTAAAATATATTTAATATTATT
Found at i:92905474 original size:59 final size:60
Alignment explanation
Indices: 92905353--92905477 Score: 173
Period size: 59 Copynumber: 2.1 Consensus size: 60
92905343 TATTATATCA
* *
92905353 AAAATATTATTAAATTATATATTTTTATTTTTATTAAATTATATTTAATAATAATTATATT
1 AAAATATGATTAAATTATATATTTTTA-TTTTATTAAATTATATTTAATAATAATGATATT
* * *
92905414 AAAATATGATTAAATTATTTATTATTTA-TTTATTAAATT-TTTTTAATAATAATGCTATT
1 AAAATATGATTAAATTATATATT-TTTATTTTATTAAATTATATTTAATAATAATGATATT
92905473 AAAAT
1 AAAAT
92905478 TTAATAACAA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
59 22 0.38
60 11 0.19
61 21 0.36
62 4 0.07
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.54
Consensus pattern (60 bp):
AAAATATGATTAAATTATATATTTTTATTTTATTAAATTATATTTAATAATAATGATATT
Found at i:92913272 original size:13 final size:13
Alignment explanation
Indices: 92913254--92913279 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92913244 GGACATAATG
92913254 AAAAAAAGAAAGA
1 AAAAAAAGAAAGA
92913267 AAAAAAAGAAAGA
1 AAAAAAAGAAAGA
92913280 GTAGACAGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAAAGA
Found at i:92926961 original size:6 final size:6
Alignment explanation
Indices: 92926950--92926976 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
92926940 GGACAATGGC
92926950 TCCTAG TCCTAG TCCTAG TCCTAG TCC
1 TCCTAG TCCTAG TCCTAG TCCTAG TCC
92926977 CAGAGCTGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.37, G:0.15, T:0.33
Consensus pattern (6 bp):
TCCTAG
Found at i:92928387 original size:19 final size:19
Alignment explanation
Indices: 92928365--92928402 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
92928355 AATATACTCT
92928365 TTAATTTAACATATAAAAA
1 TTAATTTAACATATAAAAA
*
92928384 TTAATTTAACATTTAAAAA
1 TTAATTTAACATATAAAAA
92928403 AAAAAAATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (19 bp):
TTAATTTAACATATAAAAA
Found at i:92930270 original size:28 final size:28
Alignment explanation
Indices: 92930213--92930267 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
92930203 ACTTCTTATA
* *
92930213 AATTTTATAAAAGTTTACAATTTTAATT
1 AATTTTATAAAAGTTTAAAAATTTAATT
*
92930241 AATTTT-TAAAATTTTAAAAATTTAATT
1 AATTTTATAAAAGTTTAAAAATTTAATT
92930268 TAAAATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 18 0.75
28 6 0.25
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (28 bp):
AATTTTATAAAAGTTTAAAAATTTAATT
Found at i:92930633 original size:150 final size:150
Alignment explanation
Indices: 92930372--92930663 Score: 444
Period size: 150 Copynumber: 1.9 Consensus size: 150
92930362 AGTCATTTTG
*
92930372 TTATGTTAATATACGTGATTAGAGATGGATTTAATTACAATATATGTAACAAAAGTCGCATTAGT
1 TTATGTTAATATACGTGATTAGAGATGGATTTAATTACAATATATGTAACAAAAGTCACATTAGT
*
92930437 TCTATGTTAACATGGTTAATGAACAAGATTATTTGGAATACCTTTTGGATATGATAGAAAGATTT
66 TCTATGTTAACATGGTTAATGAACAAGATTATTCGGAATACCTTTTGGATATGATAGAAAGATTT
92930502 TGAGCTCATGAGTCAGTTGA
131 TGAGCTCATGAGTCAGTTGA
* * * *
92930522 TTATGTTGATATACGTGATTTTG-GATGGATTTAGTTACAATATATGTAACGAAAGTCACATT-G
1 TTATGTTAATATACGTGA-TTAGAGATGGATTTAATTACAATATATGTAACAAAAGTCACATTAG
* * * * *
92930585 ATTCTATGTTAACATGGTTATTGGACGAGATTGTTCGGAATACCTTTTGGATATGATAGTAAGAT
65 -TTCTATGTTAACATGGTTAATGAACAAGATTATTCGGAATACCTTTTGGATATGATAGAAAGAT
*
92930650 TTTGAGCTTATGAG
129 TTTGAGCTCATGAG
92930664 GTTATATAAT
Statistics
Matches: 128, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
149 1 0.01
150 124 0.97
151 3 0.02
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.38
Consensus pattern (150 bp):
TTATGTTAATATACGTGATTAGAGATGGATTTAATTACAATATATGTAACAAAAGTCACATTAGT
TCTATGTTAACATGGTTAATGAACAAGATTATTCGGAATACCTTTTGGATATGATAGAAAGATTT
TGAGCTCATGAGTCAGTTGA
Found at i:92932915 original size:24 final size:24
Alignment explanation
Indices: 92932823--92932924 Score: 79
Period size: 25 Copynumber: 4.3 Consensus size: 24
92932813 AAGATTATAT
* *
92932823 AATAAAATATAATAAAA-ATAATA
1 AATATAATATAAGAAAATATAATA
* *
92932846 GATATAATATGAAGTAACATATAA-A
1 AATATAATAT-AAG-AAAATATAATA
*
92932871 CAATAT-ATATAAG-TAAT-TAATA
1 -AATATAATATAAGAAAATATAATA
*
92932893 AATATAATATATGAAAATATAATA
1 AATATAATATAAGAAAATATAATA
92932917 ATATATAA
1 A-ATATAA
92932925 AAGAGATGTA
Statistics
Matches: 61, Mismatches: 9, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
21 8 0.13
22 9 0.15
23 11 0.18
24 11 0.18
25 14 0.23
26 8 0.13
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (24 bp):
AATATAATATAAGAAAATATAATA
Found at i:92932985 original size:44 final size:44
Alignment explanation
Indices: 92932819--92932985 Score: 118
Period size: 44 Copynumber: 3.8 Consensus size: 44
92932809 AATAAAGATT
* * * * * *
92932819 ATATAATAAAATATAATAA-AAATAATAGATATAATATGAAGTAAC
1 ATATAATAATATATAATAAGTAATGATAAATATAATAT-ATG-AAA
* *
92932864 ATATAAACAATATAT-ATAAGTAATTAATAAATATAATATATGAAA
1 ATAT-AATAATATATAATAAGTAA-TGATAAATATAATATATGAAA
*
92932909 ATATAATAATATATAA-AAG-AGATG-TAAA-ATAATA-ATTTAAGA
1 ATATAATAATATATAATAAGTA-ATGATAAATATAATATA-TGAA-A
92932951 A-A-AATAATATATAATAAGTAATGATAATATATAAT
1 ATATAATAATATATAATAAGTAATGATAA-ATATAAT
92932986 TTAAAATAAT
Statistics
Matches: 101, Mismatches: 9, Indels: 25
0.75 0.07 0.19
Matches are distributed among these distances:
40 13 0.13
41 16 0.16
42 10 0.10
43 3 0.03
44 18 0.18
45 15 0.15
46 12 0.12
47 14 0.14
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.32
Consensus pattern (44 bp):
ATATAATAATATATAATAAGTAATGATAAATATAATATATGAAA
Found at i:92933051 original size:42 final size:42
Alignment explanation
Indices: 92932974--92933077 Score: 108
Period size: 42 Copynumber: 2.5 Consensus size: 42
92932964 ATAAGTAATG
* * *
92932974 ATAATATATAATTTAAAATAATACTTATAACAAAATAATTTT
1 ATAATATATAATATAAAATAATAATTAGAACAAAATAATTTT
* *
92933016 ATAATATATAATATAAAAGTAA-AATTAGAATAAAATAA--AT
1 ATAATATATAATATAAAA-TAATAATTAGAACAAAATAATTTT
* *
92933056 AAAATATAT-ATATAGAATAATA
1 ATAATATATAATATAAAATAATA
92933078 TAATAAATCT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
38 3 0.06
39 8 0.15
40 9 0.17
42 30 0.57
43 3 0.06
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.35
Consensus pattern (42 bp):
ATAATATATAATATAAAATAATAATTAGAACAAAATAATTTT
Found at i:92934745 original size:28 final size:28
Alignment explanation
Indices: 92934709--92934785 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 28
92934699 GTGTCCTCTA
92934709 TTTTTTAGATTTTACAA-TTTCCCACTAT
1 TTTTTTAGATTTTACAATTTTCCC-CTAT
* * *
92934737 TTTTTTAGATTTTATAATTTTCTCGTAT
1 TTTTTTAGATTTTACAATTTTCCCCTAT
* *
92934765 TTTGTTAGATTTTACAGTTTT
1 TTTTTTAGATTTTACAATTTT
92934786 GTCCCATACT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 37 0.88
29 5 0.12
ACGTcount: A:0.22, C:0.10, G:0.08, T:0.60
Consensus pattern (28 bp):
TTTTTTAGATTTTACAATTTTCCCCTAT
Found at i:92935302 original size:45 final size:45
Alignment explanation
Indices: 92935253--92935340 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
92935243 TAGCATCTTG
* * *
92935253 TTTGCACCGTTTAGTGGTTTATCTACACCGTATTAGCAACTTTTA
1 TTTGCACCGATTAGTGGTTTACCCACACCGTATTAGCAACTTTTA
*
92935298 TTTGCACCGATTAGTGGTTTACCCACACTGTATTAGCAACTTT
1 TTTGCACCGATTAGTGGTTTACCCACACCGTATTAGCAACTTT
92935341 AATATGCAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.40
Consensus pattern (45 bp):
TTTGCACCGATTAGTGGTTTACCCACACCGTATTAGCAACTTTTA
Found at i:92936605 original size:87 final size:88
Alignment explanation
Indices: 92936459--92936632 Score: 341
Period size: 87 Copynumber: 2.0 Consensus size: 88
92936449 AAGTTATATG
92936459 TTAAGGTTGTGGTCCTAAGTCACACATACATAACTTTTCTAACATCTTAACTTCAGAAAAG-AAA
1 TTAAGGTTGTGGTCCTAAGTCACACATACATAACTTTTCTAACATCTTAACTTCAGAAAAGAAAA
92936523 AAAAAATCACTTTTTCTAAAATT
66 AAAAAATCACTTTTTCTAAAATT
92936546 TTAAGGTTGTGGTCCTAAGTCACACATACATAACTTTTCTAACATCTTAACTTCAGAAAAGAAAA
1 TTAAGGTTGTGGTCCTAAGTCACACATACATAACTTTTCTAACATCTTAACTTCAGAAAAGAAAA
92936611 AAAAAATCACTTTTTCTAAAAT
66 AAAAAATCACTTTTTCTAAAAT
92936633 ACTTGTGTGT
Statistics
Matches: 86, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
87 61 0.71
88 25 0.29
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (88 bp):
TTAAGGTTGTGGTCCTAAGTCACACATACATAACTTTTCTAACATCTTAACTTCAGAAAAGAAAA
AAAAAATCACTTTTTCTAAAATT
Found at i:92939303 original size:25 final size:25
Alignment explanation
Indices: 92939275--92939327 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
92939265 GTAAAACATT
92939275 ATTAAAATTTTACATAAATTTGAAA
1 ATTAAAATTTTACATAAATTTGAAA
92939300 ATTAAAATTTTACATAAATTTGAAA
1 ATTAAAATTTTACATAAATTTGAAA
92939325 ATT
1 ATT
92939328 TTCATAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (25 bp):
ATTAAAATTTTACATAAATTTGAAA
Found at i:92941767 original size:42 final size:42
Alignment explanation
Indices: 92941720--92941903 Score: 224
Period size: 42 Copynumber: 4.4 Consensus size: 42
92941710 ACACAACCTG
* *
92941720 GACACATGTCCATGTACTTGCCCGTGTGGCTCACATGGCCTA
1 GACACATGCCCATGTCCTTGCCCGTGTGGCTCACATGGCCTA
*
92941762 GACACACGCCCATGTCCTTGCCCGTGTGGCTCACATGGCCTA
1 GACACATGCCCATGTCCTTGCCCGTGTGGCTCACATGGCCTA
* ** * *
92941804 GACACATGCCCATGTCCTTGCCCGTGTGACTCACACAGCTTG
1 GACACATGCCCATGTCCTTGCCCGTGTGGCTCACATGGCCTA
* * ** * *
92941846 GACACACGCCCATGTCCTTACCCGTGTAACTCACACGGCCTG
1 GACACATGCCCATGTCCTTGCCCGTGTGGCTCACATGGCCTA
* *
92941888 GACAAATGCTCATGTC
1 GACACATGCCCATGTC
92941904 TCTGGCTGTG
Statistics
Matches: 125, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 125 1.00
ACGTcount: A:0.20, C:0.35, G:0.22, T:0.23
Consensus pattern (42 bp):
GACACATGCCCATGTCCTTGCCCGTGTGGCTCACATGGCCTA
Found at i:92945744 original size:37 final size:37
Alignment explanation
Indices: 92945623--92945744 Score: 122
Period size: 37 Copynumber: 3.3 Consensus size: 37
92945613 ATTCCAATCG
* *
92945623 AAACACGCCA-ATCGATCATAAGAGCTAATCC-ACATGA
1 AAACACGCCAGAT-GCTCATAAGAGCTAGTCCAAC-TGA
* * * * *
92945660 ATAACATGCCAGATGCTCATAATAGTTAGTCCACCCGA
1 A-AACACGCCAGATGCTCATAAGAGCTAGTCCAACTGA
*
92945698 TAACACGCCAGATGCTCATAAGAGCTAGTCCAACTGA
1 AAACACGCCAGATGCTCATAAGAGCTAGTCCAACTGA
*
92945735 AAACGCGCCA
1 AAACACGCCA
92945745 AAACAAGGAG
Statistics
Matches: 67, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
37 40 0.60
38 24 0.36
39 3 0.04
ACGTcount: A:0.38, C:0.28, G:0.16, T:0.18
Consensus pattern (37 bp):
AAACACGCCAGATGCTCATAAGAGCTAGTCCAACTGA
Found at i:92953403 original size:65 final size:65
Alignment explanation
Indices: 92953329--92953458 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
92953319 AATAAAATTG
92953329 TTGTTTTGAAAAATATGTTTATAAATTGAGAATAAATTTTCTCTATTTTTTGTCAAAATAACAAT
1 TTGTTTTGAAAAATATGTTTATAAATTGAGAATAAATTTTCTCTATTTTTTGTCAAAATAACAAT
92953394 TTGTTTTGAAAAATATGTTTATAAATTGAGAATAAATTTTCTCTATTTTTTGTCAAAATAACAAT
1 TTGTTTTGAAAAATATGTTTATAAATTGAGAATAAATTTTCTCTATTTTTTGTCAAAATAACAAT
92953459 CTCTCAAAAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.46
Consensus pattern (65 bp):
TTGTTTTGAAAAATATGTTTATAAATTGAGAATAAATTTTCTCTATTTTTTGTCAAAATAACAAT
Found at i:92953822 original size:25 final size:26
Alignment explanation
Indices: 92953793--92953842 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
92953783 TTTCTCACCC
*
92953793 AATTTTATCCC-AATAAAATTTTGAT
1 AATTTTACCCCTAATAAAATTTTGAT
92953818 AATTTTACCCCTAATAAAATTTTGA
1 AATTTTACCCCTAATAAAATTTTGA
92953843 AAAAATTCGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.40, C:0.14, G:0.04, T:0.42
Consensus pattern (26 bp):
AATTTTACCCCTAATAAAATTTTGAT
Found at i:92954438 original size:23 final size:23
Alignment explanation
Indices: 92954412--92954457 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
92954402 CATCCATCAC
* *
92954412 ACAAACGGATGACTAGTGGCCAT
1 ACAAACGGACGACCAGTGGCCAT
*
92954435 ACAAACGGACGACCCGTGGCCAT
1 ACAAACGGACGACCAGTGGCCAT
92954458 GTTTTCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.33, C:0.28, G:0.26, T:0.13
Consensus pattern (23 bp):
ACAAACGGACGACCAGTGGCCAT
Found at i:92958575 original size:19 final size:19
Alignment explanation
Indices: 92958543--92958579 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
92958533 ATTTCATACG
92958543 TTGGCCCAATTTCTTCGTTT
1 TTGGCCCAATTTC-TCGTTT
92958563 TTGGCCC-ATTTCTCGTT
1 TTGGCCCAATTTCTCGTT
92958580 CCTTTTACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 5 0.29
20 7 0.41
ACGTcount: A:0.08, C:0.27, G:0.16, T:0.49
Consensus pattern (19 bp):
TTGGCCCAATTTCTCGTTT
Found at i:92962227 original size:40 final size:40
Alignment explanation
Indices: 92962164--92962341 Score: 204
Period size: 40 Copynumber: 4.5 Consensus size: 40
92962154 AAGCCAAGTA
* *
92962164 CCTTCGGGATTTA-CCCGGATATAGCT-GCTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAGCTCGCTCAAATG
* * * * *
92962203 CCTTCGGGACATAGCTCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCTCAAATG
92962243 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCAT-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGC-TCAAATG
* *
92962283 CCTTCGGGACTTAGCCCGGA-ACTAGTCA-CTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-AGCTCGCTCAAATG
92962323 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
92962342 TTATCATCCA
Statistics
Matches: 120, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 13 0.11
40 106 0.88
41 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCTCAAATG
Found at i:92962323 original size:80 final size:80
Alignment explanation
Indices: 92962164--92962341 Score: 229
Period size: 80 Copynumber: 2.2 Consensus size: 80
92962154 AAGCCAAGTA
* * *
92962164 CCTTCGGGATTTA-CCCGGATATAGCTGCTCGCTCGAATGCCTTCGGGACATAGCTCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCTGCTCGCTCAAATGCCTTCGGGACATAGCCCGGATATAG
* *
92962228 TAACTCGCACCAATG
66 TAACTAGCACAAATG
*
92962243 CCTTCGGGACTTAGCCCGGATATAG-TAGCTCGCAT-AAATGCCTTCGGGACTTAGCCCGGA-AC
1 CCTTCGGGACTTAGCCCGGATATAGCT-GCTCGC-TCAAATGCCTTCGGGACATAGCCCGGATA-
* *
92962305 TAGTCACTAGCGCAAATG
63 TAGTAACTAGCACAAATG
92962323 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
92962342 TTATCATCCA
Statistics
Matches: 87, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
79 14 0.16
80 72 0.83
81 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCTGCTCGCTCAAATGCCTTCGGGACATAGCCCGGATATAG
TAACTAGCACAAATG
Found at i:92965824 original size:25 final size:25
Alignment explanation
Indices: 92965790--92965840 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
92965780 AAGTGTACAT
92965790 TCATCGCTCGTAAAGCAAACAGTGA
1 TCATCGCTCGTAAAGCAAACAGTGA
92965815 TCATCGCTCGTAAAGCAAACAGTGA
1 TCATCGCTCGTAAAGCAAACAGTGA
92965840 T
1 T
92965841 TTACGACTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.22
Consensus pattern (25 bp):
TCATCGCTCGTAAAGCAAACAGTGA
Found at i:92970461 original size:40 final size:40
Alignment explanation
Indices: 92970400--92970657 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
92970390 AAGCCAAGTA
* * * *
92970400 CCTTCGGGATTTA-CCCGGATATAGCT-GCTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
92970439 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
92970479 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACCAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
92970519 CCTTCGAGACTTAGCCCGGATATAGTAAGTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
92970559 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
92970599 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
92970639 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
92970658 TTATCATCCA
Statistics
Matches: 196, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 13 0.07
40 183 0.93
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:92982056 original size:6 final size:6
Alignment explanation
Indices: 92982045--92982078 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
92982035 TCCTCTTATC
92982045 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT-A TTT
92982079 CAATTTTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 23 0.85
7 4 0.15
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:92987380 original size:29 final size:29
Alignment explanation
Indices: 92987348--92987405 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
92987338 TATTATTCTG
92987348 GAATAATATATTTAATAGATGAGAATAAA
1 GAATAATATATTTAATAGATGAGAATAAA
92987377 GAATAATATATTTAATAGATGAGAATAAA
1 GAATAATATATTTAATAGATGAGAATAAA
92987406 TTCTATCTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.55, C:0.00, G:0.14, T:0.31
Consensus pattern (29 bp):
GAATAATATATTTAATAGATGAGAATAAA
Found at i:92988017 original size:18 final size:19
Alignment explanation
Indices: 92987990--92988028 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
92987980 TAATGTTTTC
*
92987990 CATTTCTTTC-TTTTTATT
1 CATTTCTTTCATTTTAATT
*
92988008 CATTTTTTTCATTTTAATT
1 CATTTCTTTCATTTTAATT
92988027 CA
1 CA
92988029 AACATGAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.18, C:0.15, G:0.00, T:0.67
Consensus pattern (19 bp):
CATTTCTTTCATTTTAATT
Found at i:92996000 original size:62 final size:59
Alignment explanation
Indices: 92995889--92996005 Score: 162
Period size: 62 Copynumber: 1.9 Consensus size: 59
92995879 ATAACTTTAA
* * * *
92995889 TATTAAATTAATATAATATTTATCAAGATAAATATTAAATTAAATTTAATATTAAATCT
1 TATTAAAATAATAGAATATTTATCAAGATAAAGATTAAATTAAAATTAATATTAAATCT
*
92995948 TATTAAAATAATAGAATATTTATCTACAAGATAAAGATTAAATTAAAATTAATTTTAA
1 TATTAAAATAATAGAATATTTA--T-CAAGATAAAGATTAAATTAAAATTAATATTAA
92996006 GATAATCAGT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 20 0.40
61 1 0.02
62 29 0.58
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.41
Consensus pattern (59 bp):
TATTAAAATAATAGAATATTTATCAAGATAAAGATTAAATTAAAATTAATATTAAATCT
Found at i:93005028 original size:40 final size:40
Alignment explanation
Indices: 93004973--93005190 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
93004963 CGGATGATAA
*
93004973 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
* *
93005013 CCGGGCTAAGCCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
* *
93005053 CCGGGCTAAGTCTCGAAGGCATTTGAGCGAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATAT
* * *
93005093 CCGGCCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* *
93005133 CCGGGCTAAATCCCGAAGGCATTTGAGCGAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATAT
*
93005173 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
93005191 TACTTGGTTT
Statistics
Matches: 161, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 18 0.11
40 141 0.88
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:93005108 original size:80 final size:79
Alignment explanation
Indices: 93004969--93005190 Score: 297
Period size: 80 Copynumber: 2.8 Consensus size: 79
93004959 TATTCGGATG
* * *
93004969 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAGCCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAG-CTATA-TCC-GGCTAAGTCCCGAAGG
*
93005032 CATTTGTGCTAGTGACT
63 CATTTGTGCGAGTGACT
* *
93005049 A-ATTCCGGGCTAAGTCTCGAAGGCATTTGAGCGAGTAGCTATATCCGGCCTAAGTCCCGAAGGC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGG-CTAAGTCCCGAAGGC
*
93005113 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTGACT
* *
93005129 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGCTAAGTCCCGAAGG
93005191 TACTTGGTTT
Statistics
Matches: 126, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
79 16 0.13
80 107 0.85
81 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTGACT
Found at i:93010729 original size:15 final size:15
Alignment explanation
Indices: 93010711--93010752 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
93010701 GAAACCCAGA
*
93010711 ATAAGGAAATCTAAG
1 ATAAGGAAATCCAAG
* *
93010726 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
93010741 ATAAGGAAATCC
1 ATAAGGAAATCC
93010753 CATTTACAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:93013758 original size:38 final size:38
Alignment explanation
Indices: 93013715--93014093 Score: 218
Period size: 38 Copynumber: 9.0 Consensus size: 38
93013705 TTTCAAATTA
*
93013715 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
* *
93013753 ACATGTTTAACCGTGGTATATCCACTTAGCACCATGTTAAT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACG-T--T
* * * * *
93013794 GAATCAATATATGTAACCGTAGCATATCCACTTAGAACCACATT
1 --A-C-ATGTA--TAACCGTGGTATATCCACTTAGCACCACGTT
* * *
93013838 ACATGTTTAACCATGGTATATCCACTTAACACCACGTTAAT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACG-T--T
* *
93013879 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGTATATCCACTTAGCACCACGTT
* * *
93013923 ACATGTTTAACCGTGGTACATCCACTTAACACCACGTTAAT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACG-T--T
* *
93013964 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGTATATCCACTTAGCACCACGTT
** * *
93014008 ACATGTATCAATATGTGTAATTGTGGTATATCCACTTAGCAACACTTT
1 ACATG------TA----TAACCGTGGTATATCCACTTAGCACCACGTT
*
93014056 ACATGTATAACCGTGGTATATTCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
93014094 TATCCATTCC
Statistics
Matches: 262, Mismatches: 44, Indels: 70
0.70 0.12 0.19
Matches are distributed among these distances:
38 108 0.41
39 3 0.01
40 8 0.03
41 6 0.02
42 5 0.02
43 3 0.01
44 6 0.02
45 9 0.03
46 5 0.02
47 76 0.29
48 33 0.13
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:93013819 original size:85 final size:85
Alignment explanation
Indices: 93013722--93014013 Score: 521
Period size: 85 Copynumber: 3.4 Consensus size: 85
93013712 TTAACATGTA
*
93013722 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAACACCA
*
93013787 TGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* * * *
93013807 TAACCGTAGCATATCCACTTAGAACCACATTACATGTTTAACCATGGTATATCCACTTAACACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAACACCA
93013872 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
93013892 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTACATCCACTTAACACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAACACCA
93013957 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
93013977 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
93014014 ATCAATATGT
Statistics
Matches: 196, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 196 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAACACCA
CGTTAATGAATCAATATATG
Found at i:93013918 original size:47 final size:47
Alignment explanation
Indices: 93013845--93014093 Score: 237
Period size: 47 Copynumber: 5.7 Consensus size: 47
93013835 ATTACATGTT
* *
93013845 TAACCATGGTATATCCACTTAACACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
93013892 TAACCGTGGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
93013930 TAACCGTGGTACATCCACTTAACACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
93013977 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
** * *
93014025 TAATTGTGGTATATCCACTTAGCAACAC-TT--T--A-C-ATGTA--
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
93014063 TAACCGTGGTATATTCACTTAGCACCACGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTT
93014094 TATCCATTCC
Statistics
Matches: 168, Mismatches: 23, Indels: 30
0.76 0.10 0.14
Matches are distributed among these distances:
38 50 0.30
39 4 0.02
40 6 0.04
41 3 0.02
42 2 0.01
43 1 0.01
44 3 0.02
45 3 0.02
46 2 0.01
47 57 0.34
48 37 0.22
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (47 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:93014039 original size:48 final size:48
Alignment explanation
Indices: 93013930--93014063 Score: 180
Period size: 48 Copynumber: 2.8 Consensus size: 48
93013920 GTTACATGTT
* * *
93013930 TAACCGTGGTACATCCACTTAACACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* *
93013977 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
** * *
93014025 TAATTGTGGTATATCCACTTAGCAACACTTTACATGTAT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
93014064 AACCGTGGTA
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
47 29 0.38
48 47 0.62
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.31
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:93014082 original size:133 final size:132
Alignment explanation
Indices: 93013845--93014093 Score: 363
Period size: 133 Copynumber: 1.9 Consensus size: 132
93013835 ATTACATGTT
*
93013845 TAACCATGGTATATCCACTTAACACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
1 TAACCATGGCATATCCACTTAACACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
* *
93013910 TTAGCACCACGTTACATGTTTAACCGTGGTACATCCACTTAACACCACGTTAATGAATCAATATA
66 TTAGCAACACGTTACATGTATAACCGTGGTACATCCACTTAACACCACGTTAATGAATCAATATA
93013975 TG
131 TG
* * * * ** *
93013977 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATTGTGGTATATCCA
1 TAACCATGGCATATCCACTTAACACCACGTTA-ATGAATCAATATATGTAACCGTGGCATATCCA
* * * *
93014042 CTTAGCAACACTTTACATGTATAACCGTGGTATATTCACTTAGCACCACGTT
65 CTTAGCAACACGTTACATGTATAACCGTGGTACATCCACTTAACACCACGTT
93014094 TATCCATTCC
Statistics
Matches: 102, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
132 29 0.28
133 73 0.72
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (132 bp):
TAACCATGGCATATCCACTTAACACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
TTAGCAACACGTTACATGTATAACCGTGGTACATCCACTTAACACCACGTTAATGAATCAATATA
TG
Found at i:93020515 original size:12 final size:13
Alignment explanation
Indices: 93020498--93020535 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
93020488 ATCCTGGAAT
93020498 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
93020510 ATTAAGAACACATA
1 ATTAAGAACA-AGA
93020524 ATTAAGAACAAG
1 ATTAAGAACAAG
93020536 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:93022941 original size:43 final size:43
Alignment explanation
Indices: 93022796--93022941 Score: 113
Period size: 43 Copynumber: 3.4 Consensus size: 43
93022786 TGTGTTTTCG
* *
93022796 TGTAAGACCACGTCTGGGAC-GTTGGCATCGA-GTTATGTTTTACG
1 TGTAAGACCACGTCTGGGACAG-TGGCATCGATGTT-TG-ATTACA
* * * * * * *
93022840 TCTAAGACCATGTCTAGGACA-TCGGCATC-CTATCTGATTTCA
1 TGTAAGACCACGTCTGGGACAGT-GGCATCGATGTTTGATTACA
* *
93022882 TGTAAGACC-CTATCTGGGACAGTGGCATCGATGTTTGATGACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCGATGTTTGATTACA
93022925 TGTAAGACCACGTCTGG
1 TGTAAGACCACGTCTGG
93022942 AACTTTGGCA
Statistics
Matches: 76, Mismatches: 19, Indels: 15
0.69 0.17 0.14
Matches are distributed among these distances:
42 25 0.33
43 26 0.34
44 25 0.33
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGATGTTTGATTACA
Found at i:93056081 original size:14 final size:15
Alignment explanation
Indices: 93056064--93056105 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
93056054 TTGAAAAATG
93056064 AAAAAAAAGAA-AAA
1 AAAAAAAAGAAGAAA
*
93056078 AAAAAAAAGAAGGAA
1 AAAAAAAAGAAGAAA
*
93056093 AAAGAAAAGAAGA
1 AAAAAAAAGAAGA
93056106 GGAGCAGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAGAAA
Found at i:93056104 original size:15 final size:14
Alignment explanation
Indices: 93056064--93056105 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
93056054 TTGAAAAATG
*
93056064 AAAAAAAAGAAAAA
1 AAAAAAAAGAAGAA
93056078 AAAAAAAAGAAGGAA
1 AAAAAAAAGAA-GAA
*
93056093 AAAGAAAAGAAGA
1 AAAAAAAAGAAGA
93056106 GGAGCAGACA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAAAAGAAGAA
Found at i:93060021 original size:30 final size:29
Alignment explanation
Indices: 93059984--93060060 Score: 88
Period size: 28 Copynumber: 2.7 Consensus size: 29
93059974 TAGCAATTAA
93059984 TTAATTCTTTAAAAATTAAAAATATTTTT
1 TTAATTCTTTAAAAATTAAAAATATTTTT
* **
93060013 TATAATTC-TT-AAATTTTTAAATATTTTT
1 T-TAATTCTTTAAAAATTAAAAATATTTTT
93060041 TTATATT-TTTAAAAATTAAA
1 TTA-ATTCTTTAAAAATTAAA
93060061 TAATTGCTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
27 2 0.05
28 21 0.55
29 9 0.24
30 6 0.16
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.55
Consensus pattern (29 bp):
TTAATTCTTTAAAAATTAAAAATATTTTT
Found at i:93065911 original size:5 final size:5
Alignment explanation
Indices: 93065903--93065931 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
93065893 TCTTAATATA
93065903 ATTAT ATTAT ATTAT ATTAT ATTAT ATTA
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTA
93065932 AAAGATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:93073622 original size:46 final size:46
Alignment explanation
Indices: 93073555--93073801 Score: 404
Period size: 46 Copynumber: 5.4 Consensus size: 46
93073545 CGCGGGAGTG
93073555 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
93073601 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
*
93073647 TGAAAGATACCATGACAACCTGATATGAAATGTGTAAGACCATGGT
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
* **
93073693 TGAAAGATACCATGGCAACGTGATATGAAATGAATAAGACCATGGT
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
* * * ** *
93073739 TGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATAGT
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
93073785 TGAAAGATACCATGGCA
1 TGAAAGATACCATGGCA
93073802 GCATGACAGA
Statistics
Matches: 193, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 193 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGT
Found at i:93073816 original size:92 final size:92
Alignment explanation
Indices: 93073555--93073851 Score: 398
Period size: 92 Copynumber: 3.2 Consensus size: 92
93073545 CGCGGGAGTG
93073555 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
93073620 CTGATATGAAATGTGTAAGACCATGGT
66 ATGATATGAAATGAATAAGACCATGGT
*
93073647 TGAAAGATACCATGACAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
93073712 GTGATATGAAATGAATAAGACCATGGT
66 ATGATATGAAATGAATAAGACCATGGT
* * * ** * *
93073739 TGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATAGTTGAAAGATACCATGGCAGC
1 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
93073804 ATGACA-GAAAATGAATGAGTAAGACCATAGT
66 ATGATATG-AAATG-A--A-TAAGACCATGGT
* *
93073835 TGAAAGACACTATGGCA
1 TGAAAGATACCATGGCA
93073852 TCATGTCAAA
Statistics
Matches: 183, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
91 1 0.01
92 154 0.84
93 1 0.01
95 1 0.01
96 26 0.14
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (92 bp):
TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
ATGATATGAAATGAATAAGACCATGGT
Found at i:93073816 original size:138 final size:140
Alignment explanation
Indices: 93073555--93073851 Score: 402
Period size: 138 Copynumber: 2.1 Consensus size: 140
93073545 CGCGGGAGTG
**
93073555 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * * *
93073620 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAAATG-T-GTA
66 CTGACATGAAAAGAATAAGACCATAGTTGAAAGATACCATGACAACATGACATGAAATGATAGTA
*
93073683 AGACCATGGT
131 AGACCATAGT
*
93073693 TGAAAGATACCATGGCAACGTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
93073758 GTGACATGAAAAGAATAAGACCATAGTTGAAAGATACCATGGCAGCATGACA-GAAAATGAATGA
66 CTGACATGAAAAGAATAAGACCATAGTTGAAAGATACCATGACAACATGACATG-AAATG-AT-A
93073822 GTAAGACCATAGT
128 GTAAGACCATAGT
* *
93073835 TGAAAGACACTATGGCA
1 TGAAAGATACCATGGCA
93073852 TCATGTCAAA
Statistics
Matches: 138, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
137 1 0.01
138 109 0.79
140 1 0.01
142 27 0.20
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (140 bp):
TGAAAGATACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
CTGACATGAAAAGAATAAGACCATAGTTGAAAGATACCATGACAACATGACATGAAATGATAGTA
AGACCATAGT
Found at i:93073850 original size:50 final size:49
Alignment explanation
Indices: 93073555--93073856 Score: 276
Period size: 46 Copynumber: 6.4 Consensus size: 49
93073545 CGCGGGAGTG
* * * *
93073555 TGAAAGATACCATGGCAACCTGATATGAAATG--TG-TAAGACCATGGT
1 TGAAAGATACCATGGCAACATGACATGAAAAGAATGATAAGACCATAGT
* * * *
93073601 TGAAAGATACCATGGCAACCTGATATGAAATG--TG-TAAGACCATGGT
1 TGAAAGATACCATGGCAACATGACATGAAAAGAATGATAAGACCATAGT
* * * * *
93073647 TGAAAGATACCATGACAACCTGATATGAAATG--TG-TAAGACCATGGT
1 TGAAAGATACCATGGCAACATGACATGAAAAGAATGATAAGACCATAGT
* * * *
93073693 TGAAAGATACCATGGCAACGTGATATGAAATG-A--ATAAGACCATGGT
1 TGAAAGATACCATGGCAACATGACATGAAAAGAATGATAAGACCATAGT
*
93073739 TGAAAGATACCATGGCAACGTGACATGAAAAG-A--ATAAGACCATAGT
1 TGAAAGATACCATGGCAACATGACATGAAAAGAATGATAAGACCATAGT
*
93073785 TGAAAGATACCATGGCAGCATGACA-GAAAATGAATGAGTAAGACCATAGT
1 TGAAAGATACCATGGCAACATGACATGAAAA-GAATGA-TAAGACCATAGT
* * *
93073835 TGAAAGACACTATGGCATCATG
1 TGAAAGATACCATGGCAACATG
93073857 TCAAAGATAA
Statistics
Matches: 238, Mismatches: 11, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
45 5 0.02
46 200 0.84
47 1 0.00
49 1 0.00
50 31 0.13
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (49 bp):
TGAAAGATACCATGGCAACATGACATGAAAAGAATGATAAGACCATAGT
Found at i:93076413 original size:196 final size:196
Alignment explanation
Indices: 93076067--93076461 Score: 754
Period size: 196 Copynumber: 2.0 Consensus size: 196
93076057 TAATGTGAGC
93076067 TTTGTAAAATTTGATGATAGTAAATGAAAGATATGTGTTAGATTACTAAGTTTTATCTTTGAATT
1 TTTGTAAAATTTGATGATAGTAAATGAAAGATATGTGTTAGATTACTAAGTTTTATCTTTGAATT
93076132 GTTTATGAATTTGAGTAATTTGGGCTAAATTGTGAAATTTGTAAATTGAGGGACTAAAATGTGAA
66 GTTTATGAATTTGAGTAATTTGGGCTAAATTGTGAAATTTGTAAATTGAGGGACTAAAATGTGAA
*
93076197 ATAAATGAAATATGTGGACTTTTATGAGTGCTATGAATATTCGTCTAGGCATGTGTACAAAGAAA
131 ATAAATGAAATATGTGGACTTGTATGAGTGCTATGAATATTCGTCTAGGCATGTGTACAAAGAAA
93076262 T
196 T
* *
93076263 TTTGTTAAGTTTGATGATAGTAAATGAAAGATATGTGTTAGATTACTAAGTTTTATCTTTGAATT
1 TTTGTAAAATTTGATGATAGTAAATGAAAGATATGTGTTAGATTACTAAGTTTTATCTTTGAATT
93076328 GTTTATGAATTTGAGTAATTTGGGCTAAATTGTGAAATTTGTAAATTGAGGGACTAAAATGTGAA
66 GTTTATGAATTTGAGTAATTTGGGCTAAATTGTGAAATTTGTAAATTGAGGGACTAAAATGTGAA
*
93076393 ATAAATGAAATATTTGGACTTGTATGAGTGCTATGAATATTCGTCTAGGCATGTGTACAAAGAAA
131 ATAAATGAAATATGTGGACTTGTATGAGTGCTATGAATATTCGTCTAGGCATGTGTACAAAGAAA
93076458 T
196 T
93076459 TTT
1 TTT
93076462 ATGTATTTTG
Statistics
Matches: 195, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
196 195 1.00
ACGTcount: A:0.35, C:0.05, G:0.21, T:0.39
Consensus pattern (196 bp):
TTTGTAAAATTTGATGATAGTAAATGAAAGATATGTGTTAGATTACTAAGTTTTATCTTTGAATT
GTTTATGAATTTGAGTAATTTGGGCTAAATTGTGAAATTTGTAAATTGAGGGACTAAAATGTGAA
ATAAATGAAATATGTGGACTTGTATGAGTGCTATGAATATTCGTCTAGGCATGTGTACAAAGAAA
T
Found at i:93077049 original size:43 final size:43
Alignment explanation
Indices: 93076879--93077050 Score: 122
Period size: 43 Copynumber: 4.0 Consensus size: 43
93076869 ACATAGGATC
* * * * *
93076879 CGATATGTG-TTATCGTATAAGACCATGTTTGGGATGTTGGCAT
1 CGATATTTGATTA-CGTGTAAGACCACGTTCGGGACGTTGGCAT
* * * * *
93076922 TGACT-TATGATTTACGTGTAAGACCATGTTTGAGACGTTGGCAT
1 CGA-TATTTGA-TTACGTGTAAGACCACGTTCGGGACGTTGGCAT
* * *
93076966 CG-TATTTGATTTCGTGTAAAACC-C-TGTCTGGGATAG-TGGCAT
1 CGATATTTGATTACGTGTAAGACCACGT-TC-GGGA-CGTTGGCAT
*
93077008 CGATATTTGATTACATGTAAGACCACGTTCGGGACGTTGGCAT
1 CGATATTTGATTACGTGTAAGACCACGTTCGGGACGTTGGCAT
93077051 TGTACGACAT
Statistics
Matches: 101, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 25 0.25
43 38 0.38
44 32 0.32
45 4 0.04
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (43 bp):
CGATATTTGATTACGTGTAAGACCACGTTCGGGACGTTGGCAT
Found at i:93080413 original size:26 final size:26
Alignment explanation
Indices: 93080377--93080434 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
93080367 TGCCTATGTG
93080377 ATTGATTCGAAAATGTCAGAAAAGAA
1 ATTGATTCGAAAATGTCAGAAAAGAA
93080403 ATTGATTCGAAAATGTCAGAAAAGAA
1 ATTGATTCGAAAATGTCAGAAAAGAA
93080429 AGTTGA
1 A-TTGA
93080435 ATCAGTGCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 27 0.87
27 4 0.13
ACGTcount: A:0.48, C:0.07, G:0.21, T:0.24
Consensus pattern (26 bp):
ATTGATTCGAAAATGTCAGAAAAGAA
Found at i:93084638 original size:43 final size:44
Alignment explanation
Indices: 93084564--93084711 Score: 135
Period size: 43 Copynumber: 3.4 Consensus size: 44
93084554 GTATATGAGT
* *
93084564 ACGTCTGGGACATTGGTATC-A-ACTTATGATTTACGTGTAAGACC
1 ACGTCTGGGACGTTGGCATCGATA-TT-TGATTTACGTGTAAGACC
* *
93084608 ACGTTTGGGATGTTGGCATCG-TATTTGATTT-CGTGTAAGACC
1 ACGTCTGGGACGTTGGCATCGATATTTGATTTACGTGTAAGACC
** ** * * *
93084650 TTGTCTGGGACAATAGCATTGATATTTGA-TTACATGTAAGACC
1 ACGTCTGGGACGTTGGCATCGATATTTGATTTACGTGTAAGACC
*
93084693 ACATCTGGGACGTTGGCAT
1 ACGTCTGGGACGTTGGCAT
93084712 TGTACGAGAT
Statistics
Matches: 81, Mismatches: 19, Indels: 9
0.74 0.17 0.08
Matches are distributed among these distances:
42 26 0.32
43 36 0.44
44 18 0.22
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (44 bp):
ACGTCTGGGACGTTGGCATCGATATTTGATTTACGTGTAAGACC
Found at i:93084712 original size:43 final size:42
Alignment explanation
Indices: 93084594--93084715 Score: 136
Period size: 43 Copynumber: 2.9 Consensus size: 42
93084584 AACTTATGAT
* * *
93084594 TTACGTGTAAGACCACGTTTGGGATGTTGGCATCGTATTTGA
1 TTACGTGTAAGACCACGTCTGGGACGTTGGCATTGTATTTGA
* ** ** *
93084636 TTTCGTGTAAGACCTTGTCTGGGACAATAGCATTGATATTTGA
1 TTACGTGTAAGACCACGTCTGGGACGTTGGCATTG-TATTTGA
* *
93084679 TTACATGTAAGACCACATCTGGGACGTTGGCATTGTA
1 TTACGTGTAAGACCACGTCTGGGACGTTGGCATTGTA
93084716 CGAGATTTTT
Statistics
Matches: 62, Mismatches: 17, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (42 bp):
TTACGTGTAAGACCACGTCTGGGACGTTGGCATTGTATTTGA
Found at i:93087379 original size:21 final size:21
Alignment explanation
Indices: 93087329--93087381 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
93087319 TAGAAACTCG
93087329 AAAGCTGAACAGAACCTCATA
1 AAAGCTGAACAGAACCTCATA
* *
93087350 AGAGCTGAACAGGAA-CTCGTA
1 AAAGCTGAACA-GAACCTCATA
*
93087371 AAAGTTGAACA
1 AAAGCTGAACA
93087382 AAAGCTCGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 24 0.89
22 3 0.11
ACGTcount: A:0.45, C:0.19, G:0.21, T:0.15
Consensus pattern (21 bp):
AAAGCTGAACAGAACCTCATA
Found at i:93087402 original size:21 final size:21
Alignment explanation
Indices: 93087378--93087421 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
93087368 GTAAAAGTTG
93087378 AACAAAAGCTCGAAAGAACTA
1 AACAAAAGCTCGAAAGAACTA
* * *
93087399 AACAGAGGCTCGAAAGAGCTA
1 AACAAAAGCTCGAAAGAACTA
93087420 AA
1 AA
93087422 TAGAAAGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.52, C:0.18, G:0.20, T:0.09
Consensus pattern (21 bp):
AACAAAAGCTCGAAAGAACTA
Found at i:93087803 original size:21 final size:21
Alignment explanation
Indices: 93087765--93087804 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
93087755 TTAATAGTTT
* *
93087765 CAATAAATATATTAATTTATA
1 CAATAAAAAAATTAATTTATA
*
93087786 CAATAAAAAAATTCATTTA
1 CAATAAAAAAATTAATTTA
93087805 ATGTATTTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (21 bp):
CAATAAAAAAATTAATTTATA
Found at i:93090734 original size:39 final size:40
Alignment explanation
Indices: 93090677--93090764 Score: 101
Period size: 39 Copynumber: 2.2 Consensus size: 40
93090667 ATACTTTTAA
* * *
93090677 AATC-AGTGAAAATGATTTTAAC-CAAGCCAAATGA-TTTC
1 AATCAAGTTAAAATCATTTTAACAC-AGCAAAATGATTTTC
*
93090715 AATCAAGTTAAAATCATTTTAACACATCAAAATGATTTTC
1 AATCAAGTTAAAATCATTTTAACACAGCAAAATGATTTTC
*
93090755 AAACAAGTTA
1 AATCAAGTTA
93090765 GAATTGCTCC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
38 4 0.10
39 24 0.57
40 14 0.33
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (40 bp):
AATCAAGTTAAAATCATTTTAACACAGCAAAATGATTTTC
Found at i:93090752 original size:19 final size:19
Alignment explanation
Indices: 93090685--93090753 Score: 52
Period size: 19 Copynumber: 3.6 Consensus size: 19
93090675 AAAATCAGTG
*
93090685 AAAATGATTTTAAC-CAAGC
1 AAAATGATTTTAACAC-ATC
* * *
93090704 CAAATGATTTCAATCA-AGTT
1 AAAATGATTTTAA-CACA-TC
*
93090724 AAAATCATTTTAACACATC
1 AAAATGATTTTAACACATC
93090743 AAAATGATTTT
1 AAAATGATTTT
93090754 CAAACAAGTT
Statistics
Matches: 37, Mismatches: 9, Indels: 8
0.69 0.17 0.15
Matches are distributed among these distances:
19 25 0.68
20 12 0.32
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.33
Consensus pattern (19 bp):
AAAATGATTTTAACACATC
Found at i:93096969 original size:40 final size:38
Alignment explanation
Indices: 93096886--93096969 Score: 89
Period size: 37 Copynumber: 2.2 Consensus size: 38
93096876 ATATTTTATA
* *
93096886 TATATATATGGTAAATAGTATTATGATAATTGTTCTTT
1 TATATATACGGTAAATAATATTATGATAATTGTTCTTT
* * *
93096924 AATATATACGGT-AGTAATATTATGGTAATTGCTCTCTCTT
1 TATATATACGGTAAATAATATTATGATAATTG-T-TCT-TT
93096964 TATATA
1 TATATA
93096970 GTAATTTCAC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
37 16 0.43
38 11 0.30
39 3 0.08
40 7 0.19
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.46
Consensus pattern (38 bp):
TATATATACGGTAAATAATATTATGATAATTGTTCTTT
Found at i:93102254 original size:35 final size:36
Alignment explanation
Indices: 93102190--93102257 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 36
93102180 CATTGTTCGT
**
93102190 GAACATGTTCAATTATATGTTCATGAACATGTTTGA
1 GAACATGTTCAATTATATGTTCACAAACATGTTTGA
**
93102226 GAACATGTTCGTTTA-ATGTTCACAAACATGTT
1 GAACATGTTCAATTATATGTTCACAAACATGTT
93102258 CGTTTAACTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 15 0.54
36 13 0.46
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.38
Consensus pattern (36 bp):
GAACATGTTCAATTATATGTTCACAAACATGTTTGA
Found at i:93115641 original size:26 final size:24
Alignment explanation
Indices: 93115612--93115659 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
93115602 AATGGTAAAT
*
93115612 AATATAGTGTAAAACATACATACATA
1 AATATAAT-TAAAA-ATACATACATA
*
93115638 AATATAATTAAAAATATATACA
1 AATATAATTAAAAATACATACA
93115660 AAGATAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 5 0.25
26 7 0.35
ACGTcount: A:0.58, C:0.08, G:0.04, T:0.29
Consensus pattern (24 bp):
AATATAATTAAAAATACATACATA
Found at i:93116137 original size:16 final size:16
Alignment explanation
Indices: 93116099--93116137 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
93116089 ATCTTAAAAA
*
93116099 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
93116115 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
93116131 AATAACT
1 AAAAACT
93116138 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:93126695 original size:25 final size:23
Alignment explanation
Indices: 93126643--93126697 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
93126633 TATAAATAGT
93126643 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
93126666 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
93126691 AATAGTG
1 AATAGTG
93126698 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:93126797 original size:25 final size:26
Alignment explanation
Indices: 93126769--93126818 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
93126759 AAAAATGTAA
*
93126769 ATAATATAGTGTAAAA-A-ATACATAC
1 ATAATATAAT-TAAAATATATACATAC
93126794 ATAATATAATTAAAATATATACATA
1 ATAATATAATTAAAATATATACATA
93126819 AGATAACATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 5 0.23
25 10 0.45
26 7 0.32
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.32
Consensus pattern (26 bp):
ATAATATAATTAAAATATATACATAC
Found at i:93126815 original size:22 final size:22
Alignment explanation
Indices: 93126783--93126824 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
93126773 TATAGTGTAA
*
93126783 AAAATACATACATAATATAATT
1 AAAATACATACATAAGATAATT
*
93126805 AAAATATATACATAAGATAA
1 AAAATACATACATAAGATAA
93126825 CATGTAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (22 bp):
AAAATACATACATAAGATAATT
Found at i:93126947 original size:24 final size:24
Alignment explanation
Indices: 93126912--93126971 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
93126902 TAGAATTTAG
* *
93126912 AATATACCTAATATATTA-AAAGA
1 AATATACATAATATAATATAAAGA
*
93126935 ATATATACATAATATAATATTAAGA
1 A-ATATACATAATATAATATAAAGA
93126960 AATATA-ATAATA
1 AATATACATAATA
93126972 ACAAAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 7 0.22
24 20 0.62
25 5 0.16
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.33
Consensus pattern (24 bp):
AATATACATAATATAATATAAAGA
Found at i:93127291 original size:16 final size:16
Alignment explanation
Indices: 93127253--93127291 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
93127243 ATCTTAAAAA
*
93127253 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
93127269 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
93127285 AATAACT
1 AAAAACT
93127292 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:93127486 original size:30 final size:30
Alignment explanation
Indices: 93127450--93127517 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
93127440 AGGTACAAGT
93127450 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
* *
93127480 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
93127510 GGTGGTGG
1 GGTGGTGG
93127518 CAAAGACTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.18, C:0.06, G:0.51, T:0.25
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
Found at i:93134886 original size:58 final size:55
Alignment explanation
Indices: 93134823--93134989 Score: 167
Period size: 58 Copynumber: 2.9 Consensus size: 55
93134813 TTTTTATACT
*
93134823 ATTATATATTATGATTTTTTAATTTATTTAATAATAATTATATTAAGAATTTTATTAA
1 ATTATATATTAT--TTTTTTAATTTATTTAATAATAATTATATTAA-AATTTGATTAA
* * * * *
93134881 ATTATATATTATTTTATTAAATTATATTTAGTAATAATCATGTTAAAATATGATTAA
1 ATTATATATTATTTT-TTTAATT-TATTTAATAATAATTATATTAAAATTTGATTAA
*
93134938 ATTATTTATTATTTTTATTAAAATATT-TTTAATAATAATCT-TATTAAAATTT
1 ATTATATATTATTTTT-TT--AAT-TTATTTAATAATAAT-TATATTAAAATTT
93134990 AATAATAATA
Statistics
Matches: 90, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
56 4 0.04
57 30 0.33
58 51 0.57
59 4 0.04
60 1 0.01
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (55 bp):
ATTATATATTATTTTTTTAATTTATTTAATAATAATTATATTAAAATTTGATTAA
Found at i:93135126 original size:12 final size:13
Alignment explanation
Indices: 93135109--93135179 Score: 53
Period size: 12 Copynumber: 5.7 Consensus size: 13
93135099 TGAAATGTTC
93135109 TTAATAATAATT-
1 TTAATAATAATTA
*
93135121 TTAATATAAAATTA
1 TTAATA-ATAATTA
*
93135135 TTATTAA-ATATTA
1 TTAATAATA-ATTA
*
93135148 TTAATAATTA-TA
1 TTAATAATAATTA
*
93135160 TTAATAAT-GTTA
1 TTAATAATAATTA
93135172 TTAA-AATA
1 TTAATAATA
93135180 TATATTATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
11 3 0.06
12 23 0.48
13 17 0.35
14 5 0.10
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (13 bp):
TTAATAATAATTA
Found at i:93135440 original size:44 final size:46
Alignment explanation
Indices: 93135370--93135459 Score: 139
Period size: 44 Copynumber: 2.0 Consensus size: 46
93135360 ATTACAACAT
93135370 CATTCCATTCAACCAAACACAAGAATT-CT-ATTACAGCTCTATTC
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTATTC
***
93135414 CATTCCATTCAACCAAACAGTTGAATTACTGATTACAGCTCTATTC
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTATTC
93135460 TATCACAGCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 24 0.59
45 2 0.05
46 15 0.37
ACGTcount: A:0.34, C:0.28, G:0.07, T:0.31
Consensus pattern (46 bp):
CATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTATTC
Found at i:93135496 original size:16 final size:16
Alignment explanation
Indices: 93135445--93135496 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
93135435 TGAATTACTG
*
93135445 ATTACAGCTCTATTCT
1 ATTACAGCTCTATTCA
*
93135461 ATCACAGCTCTATTCA
1 ATTACAGCTCTATTCA
* *
93135477 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCA
93135493 ATTA
1 ATTA
93135497 AGTGAACCAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.29, C:0.29, G:0.06, T:0.37
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:93135833 original size:15 final size:15
Alignment explanation
Indices: 93135813--93135864 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
93135803 ACTACAAAAC
93135813 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
93135828 ATTTATAATTATAATAAAT
1 ATTTATTA-T-TAAT--AT
*
93135847 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
93135862 ATT
1 ATT
93135865 AATGTTGATT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:93135850 original size:19 final size:19
Alignment explanation
Indices: 93135826--93135862 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
93135816 TATTATTAAT
*
93135826 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
93135845 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
93135863 TTAATGTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:93136346 original size:53 final size:53
Alignment explanation
Indices: 93136281--93136391 Score: 168
Period size: 53 Copynumber: 2.1 Consensus size: 53
93136271 ATAAACACAG
* * *
93136281 AAAAATGTAGAAAATATTTTATGGGAAACAAATAGAACTTAATGATTGAATGT
1 AAAAATGCAGAAAATATTTTATAGGAAACAAATAGAACCTAATGATTGAATGT
* * *
93136334 AAAAATGCAGAAAATATTTTCTATGAAACAAATATAACCTAATGATTGAATGT
1 AAAAATGCAGAAAATATTTTATAGGAAACAAATAGAACCTAATGATTGAATGT
93136387 AAAAA
1 AAAAA
93136392 CAATGTAATT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (53 bp):
AAAAATGCAGAAAATATTTTATAGGAAACAAATAGAACCTAATGATTGAATGT
Found at i:93157101 original size:43 final size:43
Alignment explanation
Indices: 93156984--93157237 Score: 192
Period size: 43 Copynumber: 5.9 Consensus size: 43
93156974 AAGCAGGCTG
* * * * *
93156984 AATTTGCAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGA
1 AATTTACAGACCTTAACCCCCTAAGCAGTAGGGTAACA-AGCCA
* * *
93157028 AGA-TGAC-GAGCTTTAACCCCCTAAGTAGTAGGGTAACAAGCCA
1 A-ATTTACAGA-CCTTAACCCCCTAAGCAGTAGGGTAACAAGCCA
* * **
93157071 AATTTACAGACCTTAACCCCCTAAGCAGTAGGGTAATAGGCTG
1 AATTTACAGACCTTAACCCCCTAAGCAGTAGGGTAACAAGCCA
* ** * * * * *
93157114 AATTTACAAATATTAACCCCTTAAGTAGTAGGGAAACAGATCGA
1 AATTTACAGACCTTAACCCCCTAAGCAGTAGGGTAACA-AGCCA
* * ** * *
93157158 AGA-TGA-TGGGCTTAACCCCCTAAGCAGTAGAGTAGCAAGCCA
1 A-ATTTACAGACCTTAACCCCCTAAGCAGTAGGGTAACAAGCCA
*
93157200 AATTTACAGACCTTAAACCCCTAAGCAGTAGGGTAACA
1 AATTTACAGACCTTAACCCCCTAAGCAGTAGGGTAACA
93157238 GGTTGAATTC
Statistics
Matches: 156, Mismatches: 46, Indels: 17
0.71 0.21 0.08
Matches are distributed among these distances:
41 1 0.01
42 7 0.04
43 113 0.72
44 33 0.21
45 2 0.01
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (43 bp):
AATTTACAGACCTTAACCCCCTAAGCAGTAGGGTAACAAGCCA
Found at i:93157212 original size:129 final size:130
Alignment explanation
Indices: 93156977--93157314 Score: 432
Period size: 129 Copynumber: 2.6 Consensus size: 130
93156967 TGCAATGAAG
* * *
93156977 CAGGCTGAATTTGCAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGACGAGCTTT
1 CAGGCTGAATTTACAAATATTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGACGAGCTTT
* * *
93157042 AACCCCCTAAGTAGTAGGGTAACAAGCCAAATTTACAGACCTTAACCCCCTAAGCAGTAGGGTAA
66 AACCCCCTAAGCAGTAGAGTAACAAGCCAAATTTACAGACCTTAAACCCCTAAGCAGTAGGGTAA
* * * * *
93157107 TAGGCTGAATTTACAAATATTAACCCCTTAAGTAGTAGGGAAACAGATCGAAGATGATGGGC-TT
1 CAGGCTGAATTTACAAATATTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGACGAGCTTT
*
93157171 AACCCCCTAAGCAGTAGAGTAGCAAGCCAAATTTACAGACCTTAAACCCCTAAGCAGTAGGGTAA
66 AACCCCCTAAGCAGTAGAGTAACAAGCCAAATTTACAGACCTTAAACCCCTAAGCAGTAGGGTAA
* * ** * * * * * *
93157236 CAGGTTGAATTCACTGAT-CTAAACCCCTAAGC-GATAGGGAAATAGATCGATGATGACAAGCCT
1 CAGGCTGAATTTACAAATATTAACCCCCTAAGCAG-TAGGGAAACAGATCGAAGATGACGAGCTT
*
93157299 TAA-ACCCTAAGCAGTA
65 TAACCCCCTAAGCAGTA
93157315 AGGGTAATAG
Statistics
Matches: 179, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
127 1 0.01
128 44 0.25
129 80 0.45
130 54 0.30
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (130 bp):
CAGGCTGAATTTACAAATATTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGACGAGCTTT
AACCCCCTAAGCAGTAGAGTAACAAGCCAAATTTACAGACCTTAAACCCCTAAGCAGTAGGGTAA
Found at i:93157727 original size:24 final size:23
Alignment explanation
Indices: 93157689--93157744 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
93157679 AATTTTGGGC
*
93157689 CCAAAACCCCTAAACCCACTAAG
1 CCAAAACCCCAAAACCCACTAAG
* *
93157712 CCAATAACCCCAAAACCTACTAAA
1 CCAA-AACCCCAAAACCCACTAAG
93157736 CCTAAAACC
1 CC-AAAACC
93157745 TAACAGCAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 4 0.14
24 22 0.79
25 2 0.07
ACGTcount: A:0.46, C:0.41, G:0.02, T:0.11
Consensus pattern (23 bp):
CCAAAACCCCAAAACCCACTAAG
Found at i:93162346 original size:46 final size:47
Alignment explanation
Indices: 93162281--93162420 Score: 178
Period size: 46 Copynumber: 3.0 Consensus size: 47
93162271 TTATCTTTGA
* * * * *
93162281 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
**
93162327 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
* *
93162373 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
93162419 CA
1 CA
93162421 GAGAGCACAC
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
45 4 0.05
46 78 0.95
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
Found at i:93167248 original size:65 final size:65
Alignment explanation
Indices: 93167130--93167259 Score: 183
Period size: 65 Copynumber: 2.0 Consensus size: 65
93167120 TCATTCATGA
* * *
93167130 TACATCTAGTTAGGAGCATTTGATTCATTTTTTATCATAGCATCCTAGTTATTTGTCATAAGCAT
1 TACATCTAGTTAGGAACATTTGATTCATTTTTGATCATAGCATCCTAGTTATTTGGCATAAGCAT
* *
93167195 TACATTCTAGTTAGGAACATTTGATTCA-TTTTGATTATAGCATTCTAAG-TATTTGGCATAAGC
1 TACA-TCTAGTTAGGAACATTTGATTCATTTTTGATCATAGCATCCT-AGTTATTTGGCATAAGC
93167258 AT
64 AT
93167260 AGGAAATCAA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
65 34 0.59
66 24 0.41
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (65 bp):
TACATCTAGTTAGGAACATTTGATTCATTTTTGATCATAGCATCCTAGTTATTTGGCATAAGCAT
Found at i:93167662 original size:86 final size:85
Alignment explanation
Indices: 93167314--93167685 Score: 477
Period size: 84 Copynumber: 4.4 Consensus size: 85
93167304 TCGGTCAAGA
* * * * ** *
93167314 CAGCGAGCCTTAACCCCCTAAGCAGTGGGGTAATAGGC-AGGAAAATACAGACCTCCCCTAAACA
1 CAGCAAGCCTTAACCCCTTAAGCAGTAGGGTAACAGGCTAAAAAAATACAGATCTCCCCTAAACA
93167378 GTAGTAGAGAA-A-ATCGAAGAT
66 GTAGT-G-GAACAGATCGAAG-T
* * * *
93167399 -AGCAAGCCTTAA-CTCTCTAAGCAGTAGGGTAACCGG-TTAGAAAATACAGATCTCCCCTAAAC
1 CAGCAAGCCTTAACCCCT-TAAGCAGTAGGGTAACAGGCTAAAAAAATACAGATCTCCCCTAAAC
*
93167461 AGTAGTGGAGCAGATCGAAGT
65 AGTAGTGGAACAGATCGAAGT
* * *
93167482 CAGCAAGCCTTAACTCCTTAAGCGGTACGGTAACAGGCTAAAAAAAATTACAGATCTCCCCTAAA
1 CAGCAAGCCTTAACCCCTTAAGCAGTAGGGTAACAGGCT-AAAAAAA-TACAGATCTCCCCTAAA
93167547 CAGTAGTGGAACAGATCGAAGT
64 CAGTAGTGGAACAGATCGAAGT
93167569 CAGCAAGCCTTAACCCCTTAAGCAGTAGGGTAACAGGCTAAAAAAAATACAGATCTCCCCTAAAC
1 CAGCAAGCCTTAACCCCTTAAGCAGTAGGGTAACAGGCT-AAAAAAATACAGATCTCCCCTAAAC
*
93167634 AGTAATGGAACAGATCGAAGT
65 AGTAGTGGAACAGATCGAAGT
* *
93167655 CAGCAAGCCTTAACCCTTTAAGCAATAGGGT
1 CAGCAAGCCTTAACCCCTTAAGCAGTAGGGT
93167686 TGTAACGACC
Statistics
Matches: 254, Mismatches: 24, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
82 2 0.01
83 5 0.02
84 90 0.35
85 3 0.01
86 72 0.28
87 82 0.32
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (85 bp):
CAGCAAGCCTTAACCCCTTAAGCAGTAGGGTAACAGGCTAAAAAAATACAGATCTCCCCTAAACA
GTAGTGGAACAGATCGAAGT
Found at i:93169298 original size:15 final size:15
Alignment explanation
Indices: 93169278--93169334 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
93169268 CGATGAATTT
93169278 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
93169293 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
93169308 ATTGAATTTATATTG
1 ATTGAATTTATATTG
93169323 ATTGAA-TTATAT
1 ATTGAATTTATAT
93169335 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:93169736 original size:23 final size:23
Alignment explanation
Indices: 93169706--93169792 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
93169696 GCTTTATCGA
* *
93169706 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
93169729 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
* *
93169750 CCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
93169772 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
93169793 ACTGATCAGG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
21 34 0.64
22 1 0.02
23 18 0.34
ACGTcount: A:0.15, C:0.23, G:0.25, T:0.37
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:93171041 original size:84 final size:84
Alignment explanation
Indices: 93170891--93171285 Score: 583
Period size: 84 Copynumber: 4.7 Consensus size: 84
93170881 GGATGTTACA
* * * * *
93170891 AGGGTAACAGGCTAAAAAATATAGATCTCCCCTAAACAGTAACGGAGCAGATCGAAAACAGCAAG
1 AGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAACAGTAGCGGAGCAGATCGAAGACAGTAAG
* * *
93170956 CCTTAACTCTCTAAGTAGA
66 CCTTAACTCCCTAAGCAGT
*
93170975 AGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAACAGTAGCGGAACAGATCGAAGACAGTAAG
1 AGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAACAGTAGCGGAGCAGATCGAAGACAGTAAG
93171040 CCTTAACTCCCTAAGCAGT
66 CCTTAACTCCCTAAGCAGT
* * *
93171059 AGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAATAGTAGCGGAGCAGATCAAAGACAATAAG
1 AGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAACAGTAGCGGAGCAGATCGAAGACAGTAAG
93171124 CCTTAACTCCCTAAGCAGT
66 CCTTAACTCCCTAAGCAGT
* ** *
93171143 AGGGTAACAGGTTAGAAAATACAGATCTTTCCTAAACAGTAGCGGAGCAGATCGAAGATAGTAAG
1 AGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAACAGTAGCGGAGCAGATCGAAGACAGTAAG
*
93171208 CCTTAACTCCCTAAGTAGT
66 CCTTAACTCCCTAAGCAGT
* * * * * *
93171227 AGGGTAACCGGCTAGAAGATACAAATCTCCCCTAAAAAGTAGTGGAGCAGATTGAAGAC
1 AGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAACAGTAGCGGAGCAGATCGAAGAC
93171286 GAGTTCCTAT
Statistics
Matches: 280, Mismatches: 31, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
84 280 1.00
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.18
Consensus pattern (84 bp):
AGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAACAGTAGCGGAGCAGATCGAAGACAGTAAG
CCTTAACTCCCTAAGCAGT
Found at i:93171052 original size:44 final size:42
Alignment explanation
Indices: 93171004--93171221 Score: 118
Period size: 44 Copynumber: 5.1 Consensus size: 42
93170994 TACAGATCTC
93171004 CCCTAAACAGTAGCGGAACAGATCGAAGACAGTAAGCCTTAACT
1 CCCTAAACAGTAGCGGAACAGATCGAAGA-A-TAAGCCTTAACT
* * * *
93171048 CCCTAAGCAGTAG-GGTAACAGGCTAGAA-AATACAG----ATCT
1 CCCTAAACAGTAGCGG-AACA-GATCGAAGAATA-AGCCTTAACT
* * *
93171087 CCCCTAAATAGTAGCGGAGCAGATCAAAGACAATAAGCCTTAACT
1 -CCCTAAACAGTAGCGGAACAGATCGAAG--AATAAGCCTTAACT
* * * *
93171132 CCCTAAGCAGTAG-GGTAACAGGTTAGAA-AATACAGATCTT---T
1 CCCTAAACAGTAGCGG-AACA-GATCGAAGAATA-AG-CCTTAACT
*
93171173 -CCTAAACAGTAGCGGAGCAGATCGAAGATAGTAAGCCTTAACT
1 CCCTAAACAGTAGCGGAACAGATCGAAGA-A-TAAGCCTTAACT
93171216 CCCTAA
1 CCCTAA
93171222 GTAGTAGGGT
Statistics
Matches: 127, Mismatches: 23, Indels: 48
0.64 0.12 0.24
Matches are distributed among these distances:
39 12 0.09
40 32 0.25
41 10 0.08
42 12 0.09
43 10 0.08
44 39 0.31
45 12 0.09
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (42 bp):
CCCTAAACAGTAGCGGAACAGATCGAAGAATAAGCCTTAACT
Found at i:93171100 original size:40 final size:40
Alignment explanation
Indices: 93170975--93171184 Score: 110
Period size: 40 Copynumber: 5.0 Consensus size: 40
93170965 TCTAAGTAGA
93170975 AGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAACAGT
1 AGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAACAGT
* * * *
93171015 AGCGG-AACA-GATCGAAGACAGTA-AG-CCTTAACTCCCTAAGCAGT
1 AG-GGTAACAGGCTAGAA-A-A-TACAGATC-T--C-CCCTAAACAGT
*
93171059 AGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAATAGT
1 AGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAACAGT
* * * * * *
93171099 AGCGG-AGCAGATCAAAGACAATA-AG-CCTTAACTCCCTAAGCAGT
1 AG-GGTAACAG-GC-TAGAAAATACAGATC-T--C-CCCTAAACAGT
* **
93171143 AGGGTAACAGGTTAGAAAATACAGATCTTTCCTAAACAGT
1 AGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAACAGT
93171183 AG
1 AG
93171185 CGGAGCAGAT
Statistics
Matches: 123, Mismatches: 25, Indels: 44
0.64 0.13 0.23
Matches are distributed among these distances:
39 5 0.04
40 35 0.28
41 13 0.11
42 18 0.15
43 13 0.11
44 34 0.28
45 5 0.04
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (40 bp):
AGGGTAACAGGCTAGAAAATACAGATCTCCCCTAAACAGT
Found at i:93173852 original size:125 final size:125
Alignment explanation
Indices: 93173458--93173873 Score: 483
Period size: 125 Copynumber: 3.3 Consensus size: 125
93173448 TGAAGGTCCT
* * * * *
93173458 AGAAATCGTGCCTAATCGTGTTGGGTTTCGATTTTTTCGTTCAGCTAAAATGCGGAATATCCTTT
1 AGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTTCATTCAACTAAAATACGGAATATCCTTT
** * * *
93173523 GGAAATTTTGTCCATTTTTTTTTAAATTAAAATGAGGCAATATTTCGTATTTGGGGAGTTTG
66 -GAAATTTCATCCATGTTTTCTTAAATTAAAATGAGGCAATATTTCGTATTT-GGAAGTTTG
* * * *
93173585 AGAGATCGTGCCCAATCGTGCTGGGTTTCAATTTTTTTTCATTCGACTAAAATATGGAATATCCT
1 AGAAATCGTGCCCAATCGTGCTGGGTTTCGA--TTTTTTCATTCAACTAAAATACGGAATATCC-
* * * * *
93173650 TTTTTGAAATTTCATTCAAGTTTTCTTAAACTAAAACGAGGCAATATTTTGTATTTGGAAGTTTG
63 --TTTGAAATTTCATCCATGTTTTCTTAAATTAAAATGAGGCAATATTTCGTATTTGGAAGTTTG
* * * *
93173715 AGAGATCGTGCCCAATCGTGCTGAGTTTCGA-TTTTTCATTCAACTAAGATACGAAATATCCTTT
1 AGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTTCATTCAACTAAAATACGGAATATCCTTT
* * * *
93173779 CAACATTTCATCCATGTTTTCTTAAATTAAAATGAGGTAATATTTCGTATTTGGAAATTCG
66 GAA-ATTTCATCCATGTTTTCTTAAATTAAAATGAGGCAATATTTCGTATTTGGAAGTTTG
* * *
93173840 ATAAATCATGCCCAATCGTGCTGGGTTGCGATTT
1 AGAAATCGTGCCCAATCGTGCTGGGTTTCGATTT
93173874 ACTGTTTGGC
Statistics
Matches: 243, Mismatches: 39, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
124 5 0.02
125 75 0.31
126 2 0.01
127 53 0.22
129 26 0.11
130 37 0.15
131 42 0.17
132 3 0.01
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (125 bp):
AGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTTCATTCAACTAAAATACGGAATATCCTTT
GAAATTTCATCCATGTTTTCTTAAATTAAAATGAGGCAATATTTCGTATTTGGAAGTTTG
Found at i:93177254 original size:18 final size:19
Alignment explanation
Indices: 93177231--93177270 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
93177221 CAAGTGTATG
*
93177231 GTAAAAATAAT-TACATGT
1 GTAAAAATAATATACATAT
93177249 GTAAAAATAATATACATAT
1 GTAAAAATAATATACATAT
93177268 GTA
1 GTA
93177271 TATAATAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.53, C:0.05, G:0.10, T:0.33
Consensus pattern (19 bp):
GTAAAAATAATATACATAT
Found at i:93177317 original size:5 final size:5
Alignment explanation
Indices: 93177303--93177337 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
93177293 AATATTTAAG
93177303 TATA- TATAT TATAT TATAT TATAT TATAT TATAT T
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT T
93177338 GTTATAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:93177458 original size:24 final size:24
Alignment explanation
Indices: 93177389--93177458 Score: 58
Period size: 25 Copynumber: 2.9 Consensus size: 24
93177379 ATGAAATAGA
* *
93177389 AAAAG-GAATAGAAACAT-AGAAGT
1 AAAAGAGAA-AGAAAAATGAGAAGG
93177412 AAAA-ACGAAAGAAAAA-GAAAGAAGG
1 AAAAGA-GAAAGAAAAATG--AGAAGG
93177437 AAAAGAGAAAGAAAAATGAGAA
1 AAAAGAGAAAGAAAAATGAGAA
93177459 AAAAGCTAGG
Statistics
Matches: 38, Mismatches: 2, Indels: 13
0.72 0.04 0.25
Matches are distributed among these distances:
23 10 0.26
24 7 0.18
25 19 0.50
26 2 0.05
ACGTcount: A:0.69, C:0.03, G:0.23, T:0.06
Consensus pattern (24 bp):
AAAAGAGAAAGAAAAATGAGAAGG
Found at i:93177700 original size:24 final size:24
Alignment explanation
Indices: 93177672--93177718 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
93177662 TGGAAATGGA
93177672 ATTG-ATTTAGTATTTGAT-GAATTT
1 ATTGAATTTA-TA-TTGATCGAATTT
93177696 ATTGAATTTATATTGATCGAATT
1 ATTGAATTTATATTGATCGAATT
93177719 GATATACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 5 0.24
24 11 0.52
25 5 0.24
ACGTcount: A:0.32, C:0.02, G:0.15, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATCGAATTT
Found at i:93179255 original size:71 final size:71
Alignment explanation
Indices: 93179139--93179283 Score: 290
Period size: 71 Copynumber: 2.0 Consensus size: 71
93179129 AGACCTCCAA
93179139 AGAAAGGAACACTTATTACAATATATGTCTTTTGGAATGTCTTCTGAAATGCCTTCTTTAACCCT
1 AGAAAGGAACACTTATTACAATATATGTCTTTTGGAATGTCTTCTGAAATGCCTTCTTTAACCCT
93179204 ATACTT
66 ATACTT
93179210 AGAAAGGAACACTTATTACAATATATGTCTTTTGGAATGTCTTCTGAAATGCCTTCTTTAACCCT
1 AGAAAGGAACACTTATTACAATATATGTCTTTTGGAATGTCTTCTGAAATGCCTTCTTTAACCCT
93179275 ATACTT
66 ATACTT
93179281 AGA
1 AGA
93179284 TATGAGAACT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 74 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (71 bp):
AGAAAGGAACACTTATTACAATATATGTCTTTTGGAATGTCTTCTGAAATGCCTTCTTTAACCCT
ATACTT
Found at i:93186256 original size:28 final size:28
Alignment explanation
Indices: 93186217--93186272 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
93186207 TATGAAATTA
*
93186217 TTAAAAATATATGAATTTGTAATTTTAT
1 TTAAAAATATATGAATATGTAATTTTAT
* *
93186245 TTAATAAA-ATATTAATATGTATTTTTAT
1 TTAA-AAATATATGAATATGTAATTTTAT
93186273 AAAATTCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 21 0.88
29 3 0.12
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (28 bp):
TTAAAAATATATGAATATGTAATTTTAT
Found at i:93190222 original size:16 final size:15
Alignment explanation
Indices: 93190201--93190231 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
93190191 TAAATTGTTC
93190201 TTCTTTTTTTTCTTTT
1 TTCTTTTTTTT-TTTT
93190217 TTCTTTTTTTTTTTT
1 TTCTTTTTTTTTTTT
93190232 GGGGGGGGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTCTTTTTTTTTTTT
Found at i:93191903 original size:41 final size:41
Alignment explanation
Indices: 93191809--93191912 Score: 120
Period size: 41 Copynumber: 2.5 Consensus size: 41
93191799 ACATTTTCAG
* * *
93191809 TTCAGGTGAAATGTAGAAAAATACTTCTAACATGAAGCGCT
1 TTCAGGTGAAATATAGAAAAACACTTCTAACATGAAGCACT
* * * *
93191850 TTCAGGTAAAATATAGAAAAACACTTCTTA-TTGAAAGTACT
1 TTCAGGTGAAATATAGAAAAACACTTCTAACATG-AAGCACT
*
93191891 TTTAGGTGAAATATAGAAAAAC
1 TTCAGGTGAAATATAGAAAAAC
93191913 GCTTTCAGTT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 2 0.04
41 51 0.96
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (41 bp):
TTCAGGTGAAATATAGAAAAACACTTCTAACATGAAGCACT
Found at i:93195146 original size:46 final size:44
Alignment explanation
Indices: 93195087--93195201 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
93195077 ACAGGACAGA
* *
93195087 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
93195133 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
93195177 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
93195202 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:93195182 original size:44 final size:45
Alignment explanation
Indices: 93195087--93195220 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
93195077 ACAGGACAGA
* *
93195087 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
93195133 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
93195177 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
93195221 TAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:93198971 original size:37 final size:37
Alignment explanation
Indices: 93198909--93199017 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
93198899 AGCTCAGATG
* *
93198909 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
93198946 AAATCTCCACACGTAGTCATTGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
93198983 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
93199018 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:93199216 original size:48 final size:48
Alignment explanation
Indices: 93199158--93200139 Score: 1523
Period size: 48 Copynumber: 20.0 Consensus size: 48
93199148 ATATACACAC
* * *
93199158 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
93199206 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
93199254 ATCTCATATATATATATTTCACATTAGCCATTCGGCTTTACCACATACACAT
1 ATCTC----ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
93199306 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACGT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
93199354 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
93199402 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
93199452 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
93199500 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
93199548 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCAC----ATATACAT
**
93199602 ATCTCATACATATTTCACATTAGCCATTCAACTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
93199650 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
93199698 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
93199746 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
93199794 ATCTCATACATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAC--ATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
93199844 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
93199894 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
93199942 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
93199992 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
93200042 ACCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
93200090 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
93200138 AT
1 AT
93200140 ATTTATCTTG
Statistics
Matches: 870, Mismatches: 46, Indels: 36
0.91 0.05 0.04
Matches are distributed among these distances:
48 518 0.60
50 260 0.30
52 80 0.09
54 12 0.01
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:93199320 original size:148 final size:146
Alignment explanation
Indices: 93199158--93200139 Score: 1698
Period size: 148 Copynumber: 6.7 Consensus size: 146
93199148 ATATACACAC
* * *
93199158 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATGCATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
93199223 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACATTAGCCATTCG
66 CACTAGCCATTCGGCTTTACCACATATACATATCTC--ATATATATATTTCACATTAGCCATTCG
*
93199288 GCTTTACCACATACACAT
129 GCTTTACCACATATACAT
* *
93199306 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACGTATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
93199371 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
93199436 TTTACCACATATACAT
131 TTTACCACATATACAT
*
93199452 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
93199517 CACTAGCCATTCGGCTTTACCACATATACGTATCTCATATATATATTTCACATTAGCCATTCGGC
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
93199582 TTTACCACATATATATACAT
131 TTTACCAC----ATATACAT
**
93199602 ATCTCATACATATTTCACATTAGCCATTCAACTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
93199667 CACTAGCCATTCGGCTTTACCACATATACATATCTC--ATATATATTTCACATTAGCCATTCGGC
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
*
93199730 TTTACCACATATACGT
131 TTTACCACATATACAT
93199746 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC--ATATTT
93199811 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCG
64 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCG
93199876 GCTTTACCACATATACAT
129 GCTTTACCACATATACAT
* *
93199894 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
*
93199959 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCG
64 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCG
93200024 GCTTTACCACATATACAT
129 GCTTTACCACATATACAT
* *
93200042 ACCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
93200107 CACTAGCCATTCGGCTTTACCACACATATATAT
66 CACTAGCCATTCGGCTTTACCACATATACATAT
93200140 ATTTATCTTG
Statistics
Matches: 798, Mismatches: 26, Indels: 22
0.94 0.03 0.03
Matches are distributed among these distances:
144 62 0.08
146 265 0.33
148 363 0.45
150 108 0.14
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (146 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
TTTACCACATATACAT
Found at i:93199811 original size:344 final size:340
Alignment explanation
Indices: 93199158--93200139 Score: 1553
Period size: 344 Copynumber: 2.9 Consensus size: 340
93199148 ATATACACAC
* *
93199158 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATGCATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
93199223 CACTAGCCATTCGGCTTTACCACATATACATATC-TCATAT-ATATATATTTCACATTAGCCATT
66 CACTAGCCATTCGGCTTTACCACATATATATA-CAT-ATCTCATATATATTTCACATTAGCCATT
* *
93199286 CGGCTTTACCACATACACATATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATA
129 CGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA
* * * *
93199351 CGTATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATA
194 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCTC--ATACATA
*
93199416 TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTC
257 TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTC
*
93199481 GGCTTTACCACATATACGT
322 GGCTTTACCACATATACAT
* *
93199500 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACGTATCTCATATATATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
* *
93199565 CACATTAGCCATTCGGCTTTACCACATATATATACATATCTCATACATATTTCACATTAGCCATT
64 CACACTAGCCATTCGGCTTTACCACATATATATACATATCTCATATATATTTCACATTAGCCATT
** *
93199630 CAACTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
129 CGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA
*
93199695 CATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCATACATATT
194 CATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCATACATATT
93199760 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACACTAGCCATTC
259 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC--ATATTTCACACTAGCCATTC
93199825 GGCTTTACCACATATACAT
322 GGCTTTACCACATATACAT
* *
93199844 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
93199909 CACACTAGCCATTCGGCTTTACCAC----ATATACATATCTCATATATATATTTCACATTAGCCA
64 CACACTAGCCATTCGGCTTTACCACATATATATACATATCTC--ATATATATTTCACATTAGCCA
*
93199970 TTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACA
127 TTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACA
*
93200035 TATACATACCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCATACA
190 TATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCATACA
* * *
93200100 TATTTCACACTAGCCATTCGGCTTTACCACACATATATAT
255 TATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
93200140 ATTTATCTTG
Statistics
Matches: 593, Mismatches: 35, Indels: 22
0.91 0.05 0.03
Matches are distributed among these distances:
340 13 0.02
342 146 0.25
343 4 0.01
344 385 0.65
346 45 0.08
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (340 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATATATACATATCTCATATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACA
TATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCATACATATTTC
ACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCT
TTACCACATATACAT
Found at i:93204164 original size:13 final size:13
Alignment explanation
Indices: 93204146--93204185 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
93204136 GAATTAATTT
93204146 TTAATAAAAAATA
1 TTAATAAAAAATA
93204159 TTAATAAAAAAT-
1 TTAATAAAAAATA
*
93204171 CTAATAAAAAATA
1 TTAATAAAAAATA
93204184 TT
1 TT
93204186 TTTAAGAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 11 0.46
13 13 0.54
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (13 bp):
TTAATAAAAAATA
Done.