Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 287 of 325
Found at i:93781727 original size:21 final size:21
Alignment explanation
Indices: 93781685--93781728 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
93781675 TTACTCCAAG
*
93781685 GAAGCCGATTGATCCATCTCA
1 GAAGCCGATTCATCCATCTCA
*
93781706 GAAGCCGGATTCAT-CATTTCA
1 GAAGCC-GATTCATCCATCTCA
93781727 GA
1 GA
93781729 CAAGCTCTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (21 bp):
GAAGCCGATTCATCCATCTCA
Found at i:93786388 original size:26 final size:26
Alignment explanation
Indices: 93786359--93786466 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
93786349 TGAAATGCCC
*
93786359 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
93786385 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
93786411 ATCATAGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
93786437 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
93786463 ATCA
1 ATCA
93786467 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:93789870 original size:31 final size:30
Alignment explanation
Indices: 93789823--93789891 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 30
93789813 CTTATTCATG
*
93789823 GATTACCCAACCACGATGACCTACCACCCCA
1 GATTGCCCAACCACGATGACCTACCA-CCCA
* * *
93789854 GATTGCCCAACGACGATGGCTTACCACCCA
1 GATTGCCCAACCACGATGACCTACCACCCA
93789884 GAATTGCC
1 G-ATTGCC
93789892 TGGCAACGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 5 0.15
31 28 0.85
ACGTcount: A:0.29, C:0.39, G:0.16, T:0.16
Consensus pattern (30 bp):
GATTGCCCAACCACGATGACCTACCACCCA
Found at i:93792893 original size:82 final size:82
Alignment explanation
Indices: 93792788--93792953 Score: 305
Period size: 82 Copynumber: 2.0 Consensus size: 82
93792778 TAAAATCTGC
*
93792788 TTATATATGGAAACTTATCTTATTGATTTGATTCCAATAAATCTGATTAAAATTTTAAATCAAAT
1 TTATATATGGAAACTTATCTTATTGATTTGATTCCAATAAATCTGATTAAAATTTTAAATAAAAT
93792853 TGAGTTAATGGTAGATT
66 TGAGTTAATGGTAGATT
*
93792870 TTATATATGGAAACTTATCTTATTGATTTGATTCCAATAAATCTGATTAAAATTTTATATAAAAT
1 TTATATATGGAAACTTATCTTATTGATTTGATTCCAATAAATCTGATTAAAATTTTAAATAAAAT
*
93792935 TGATTTAATGGTAGATT
66 TGAGTTAATGGTAGATT
93792952 TT
1 TT
93792954 GTGTATTTTT
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 81 1.00
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.45
Consensus pattern (82 bp):
TTATATATGGAAACTTATCTTATTGATTTGATTCCAATAAATCTGATTAAAATTTTAAATAAAAT
TGAGTTAATGGTAGATT
Found at i:93797803 original size:18 final size:18
Alignment explanation
Indices: 93797780--93797815 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
93797770 TTAACTTAAT
93797780 TAAATCCTTAATTTCTAC
1 TAAATCCTTAATTTCTAC
93797798 TAAATCCTTAATTTCTAC
1 TAAATCCTTAATTTCTAC
93797816 CTCCTAACCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.44
Consensus pattern (18 bp):
TAAATCCTTAATTTCTAC
Found at i:93799788 original size:33 final size:35
Alignment explanation
Indices: 93799746--93799814 Score: 124
Period size: 33 Copynumber: 2.0 Consensus size: 35
93799736 TTATCTTCAG
93799746 AGTTTGTTTCGTATAGATCATGT-A-ATTCCTTAC
1 AGTTTGTTTCGTATAGATCATGTAATATTCCTTAC
93799779 AGTTTGTTTCGTATAGATCATGTAATATTCCTTAC
1 AGTTTGTTTCGTATAGATCATGTAATATTCCTTAC
93799814 A
1 A
93799815 CTTATCTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 23 0.68
34 1 0.03
35 10 0.29
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.45
Consensus pattern (35 bp):
AGTTTGTTTCGTATAGATCATGTAATATTCCTTAC
Found at i:93802484 original size:17 final size:19
Alignment explanation
Indices: 93802464--93802502 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
93802454 AACATAATAA
*
93802464 TATATAA-TATAT-TTTAT
1 TATATAATTACATATTTAT
93802481 TATATAATTACATATTTAT
1 TATATAATTACATATTTAT
93802500 TAT
1 TAT
93802503 TTTATTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 4 0.21
19 8 0.42
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (19 bp):
TATATAATTACATATTTAT
Found at i:93803959 original size:53 final size:52
Alignment explanation
Indices: 93803809--93803964 Score: 181
Period size: 52 Copynumber: 3.0 Consensus size: 52
93803799 TGACGGAAAA
* *
93803809 GATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
1 GATGTGATATGTGATTCCGTATAAGACCATAACTGGGCTATGGCATCGGTAC
* * * **
93803861 AATGTGAT-T-CGAGTTCCCATATAAGACCATAACTGGGCTATGGCATCGGTGT
1 GATGTGATATGTGA-TT-CCGTATAAGACCATAACTGGGCTATGGCATCGGTAC
* * *
93803913 GATGTGATAATGTGATTCCGTATAAGACCATATCTGGGATATGGCATTGGTA
1 GATGTGAT-ATGTGATTCCGTATAAGACCATAACTGGGCTATGGCATCGGTA
93803965 TGTTTTGTGA
Statistics
Matches: 85, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
50 1 0.01
51 3 0.04
52 46 0.54
53 30 0.35
54 3 0.04
55 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (52 bp):
GATGTGATATGTGATTCCGTATAAGACCATAACTGGGCTATGGCATCGGTAC
Found at i:93809698 original size:20 final size:20
Alignment explanation
Indices: 93809673--93809714 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
93809663 CAGTGAAAAT
93809673 ATTAGTAAAAGTGTTATGGC
1 ATTAGTAAAAGTGTTATGGC
93809693 ATTAGTAAAAGTGTTATGGC
1 ATTAGTAAAAGTGTTATGGC
93809713 AT
1 AT
93809715 CGACATGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.36
Consensus pattern (20 bp):
ATTAGTAAAAGTGTTATGGC
Found at i:93810837 original size:53 final size:50
Alignment explanation
Indices: 93810688--93810894 Score: 178
Period size: 52 Copynumber: 4.1 Consensus size: 50
93810678 GACGGAAAAG
* * **
93810688 ATGTGATATGTGCTTCTGTATAAGACCATAGCTGGGCTATGGCATCG-GT
1 ATGTGATATGCGATTCCATATAAGACCATAGCTGGGCTATGGCATCGTGT
*
93810737 ACAATGTGAT-T-CGAGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCAGTGT
1 ---ATGTGATATGCGA-TT-CCATATAAGACCATAGCTGGGCTATGGCATC-GTGT
* *
93810791 GATGTGATAATGCGATTCCATATAAGACCATATCTGGGATATGGCATCG-GT
1 -ATGTGAT-ATGCGATTCCATATAAGACCATAGCTGGGCTATGGCATCGTGT
* * * *
93810842 ATGT--TATGTGA-TCCATATAAGACCATGGCAGGGCTATGGCTTCG-GT
1 ATGTGATATGCGATTCCATATAAGACCATAGCTGGGCTATGGCATCGTGT
*
93810888 GTGTGAT
1 ATGTGAT
93810895 GTGTGACAAT
Statistics
Matches: 132, Mismatches: 14, Indels: 22
0.79 0.08 0.13
Matches are distributed among these distances:
46 33 0.25
47 5 0.04
48 2 0.02
50 5 0.04
51 5 0.04
52 45 0.34
53 29 0.22
54 5 0.04
55 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (50 bp):
ATGTGATATGCGATTCCATATAAGACCATAGCTGGGCTATGGCATCGTGT
Found at i:93810880 original size:46 final size:46
Alignment explanation
Indices: 93810807--93810897 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
93810797 ATAATGCGAT
* * *
93810807 TCCATATAAGACCATATCTGGGATATGGCATCGGTATGTTATGTGA
1 TCCATATAAGACCATAGCAGGGATATGGCATCGGTATGTGATGTGA
* * * *
93810853 TCCATATAAGACCATGGCAGGGCTATGGCTTCGGTGTGTGATGTG
1 TCCATATAAGACCATAGCAGGGATATGGCATCGGTATGTGATGTG
93810898 TGACAATGTG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCATATAAGACCATAGCAGGGATATGGCATCGGTATGTGATGTGA
Found at i:93813555 original size:27 final size:27
Alignment explanation
Indices: 93813514--93813569 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
93813504 ACACGTCAGA
*
93813514 AAAAAGAAGAATTTGTGGCGATCTATG
1 AAAAAGAAGAATTTGTAGCGATCTATG
** *
93813541 AAAAAGAAGCCTTTGTAGTGATCTATG
1 AAAAAGAAGAATTTGTAGCGATCTATG
93813568 AA
1 AA
93813570 GGGCTTGCCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
AAAAAGAAGAATTTGTAGCGATCTATG
Found at i:93823267 original size:31 final size:30
Alignment explanation
Indices: 93823228--93823287 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
93823218 ACATGCACTA
93823228 TTTTTTATCAGTTTGGTCAT-TATACTTTAC
1 TTTTTTATCAGTTTGG-CATCTATACTTTAC
*
93823258 TTTTGTTATCAGTTTGGCCTCTATACTTTA
1 TTTT-TTATCAGTTTGGCATCTATACTTTA
93823288 ATTATGCAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 6 0.22
31 21 0.78
ACGTcount: A:0.18, C:0.15, G:0.12, T:0.55
Consensus pattern (30 bp):
TTTTTTATCAGTTTGGCATCTATACTTTAC
Found at i:93823696 original size:21 final size:20
Alignment explanation
Indices: 93823660--93823738 Score: 79
Period size: 21 Copynumber: 3.8 Consensus size: 20
93823650 ATAAAAAAAA
* *
93823660 TCATAAAAATGTAAAAGAAT
1 TCATAAAATTTTAAAAGAAT
*
93823680 TCGTAAAATTTCTAAAAGAAT
1 TCATAAAATTT-TAAAAGAAT
*
93823701 ACCATAAAATTCTTTAAAA-AAT
1 -TCATAAAA-T-TTTAAAAGAAT
93823723 TCATAAAATTTTAAAA
1 TCATAAAATTTTAAAA
93823739 TTTTATAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
19 7 0.14
20 9 0.18
21 16 0.33
22 9 0.18
23 6 0.12
24 2 0.04
ACGTcount: A:0.54, C:0.09, G:0.05, T:0.32
Consensus pattern (20 bp):
TCATAAAATTTTAAAAGAAT
Found at i:93823849 original size:24 final size:24
Alignment explanation
Indices: 93823822--93823867 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
93823812 TTCTGACTAG
93823822 TTATAAT-TTGAAAAAATATATTTT
1 TTATAATCTT-AAAAAATATATTTT
*
93823846 TTATAATCTTCAAAAATATATT
1 TTATAATCTTAAAAAATATATT
93823868 ATGATTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (24 bp):
TTATAATCTTAAAAAATATATTTT
Found at i:93826241 original size:40 final size:40
Alignment explanation
Indices: 93826160--93826340 Score: 258
Period size: 40 Copynumber: 4.6 Consensus size: 40
93826150 AAACCAAGTA
** * ** *
93826160 CCTTCGGGGTTTAG-CCGGATATAGCCACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
93826199 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
93826239 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
93826279 CCTTCGGGACTTGGCCCGGTTATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
93826319 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
93826341 CAATCCGAAT
Statistics
Matches: 130, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 25 0.19
40 105 0.81
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:93830692 original size:4 final size:4
Alignment explanation
Indices: 93830685--93830709 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
93830675 TAAACAAATG
93830685 ATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATTA A
93830710 GTGAGCAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:93831861 original size:10 final size:9
Alignment explanation
Indices: 93831821--93831856 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
93831811 TACATCAAAT
93831821 ACATTAAAA
1 ACATTAAAA
93831830 ACATTAAAA
1 ACATTAAAA
93831839 ACATTAAAA
1 ACATTAAAA
*
93831848 AAATTAAAA
1 ACATTAAAA
93831857 TAAATGTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (9 bp):
ACATTAAAA
Found at i:93833935 original size:29 final size:29
Alignment explanation
Indices: 93833876--93833935 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 29
93833866 AAAGTCCGCC
* * ** *
93833876 GGGACATTAAATACAAGGTAAGTTTATTG
1 GGGACAGTAAACACAAGGTAAGTCCAATG
*
93833905 GGGACAGTAAACACGAGGTAAGTCCAATG
1 GGGACAGTAAACACAAGGTAAGTCCAATG
93833934 GG
1 GG
93833936 ATGCTAAGCT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.30, T:0.22
Consensus pattern (29 bp):
GGGACAGTAAACACAAGGTAAGTCCAATG
Found at i:93837454 original size:21 final size:20
Alignment explanation
Indices: 93837430--93837472 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
93837420 TATTTTTTAA
* *
93837430 ATTTAAAAATTTATAAAATTT
1 ATTTAAAAA-GTATAAAAATT
*
93837451 ATTTTAAAAGTATAAAAATT
1 ATTTAAAAAGTATAAAAATT
93837471 AT
1 AT
93837473 AAAATATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
ATTTAAAAAGTATAAAAATT
Found at i:93837455 original size:28 final size:28
Alignment explanation
Indices: 93837420--93837487 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 28
93837410 ATTAATCAAT
*
93837420 TATTTTTTAAA-TTTAAAAATTTATAAAA
1 TATTTTTTAAAGTATAAAAA-TTATAAAA
93837448 T-TTATTTTAAAAGTATAAAAATTATAAAA
1 TATT-TTTT-AAAGTATAAAAATTATAAAA
93837477 TATTTTTTAAA
1 TATTTTTTAAA
93837488 AAATAATTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
27 2 0.06
28 8 0.23
29 16 0.46
30 9 0.26
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (28 bp):
TATTTTTTAAAGTATAAAAATTATAAAA
Found at i:93844874 original size:99 final size:96
Alignment explanation
Indices: 93844702--93844880 Score: 252
Period size: 96 Copynumber: 1.8 Consensus size: 96
93844692 TGCCGATGCT
* * *
93844702 GATGCCATGTCCCAAACATGGTCTTACATTGGCTCATCCATCAAGTCGATGCCACGTCCCAGACA
1 GATGCCATGTCCCAAACACGGTCTTACACTAGCTCATCCATCAAGTCGATGCCACGTCCCAGACA
93844767 TGGTCTTACACTGACTATTGAAATCGAGGCC
66 TGGTCTTACACTGACTATTGAAATCGAGGCC
* * * *
93844798 GATGCCATGTCCCAAACACGGTCTTACACTAGCTCTTACAT-ATCCGTGCCGATGCCATGTCCCA
1 GATGCCATGTCCCAAACACGGTCTTACACTAGCTCATCCATCA--AGT--CGATGCCACGTCCCA
93844862 GACATGGTCTTACACTGAC
62 GACATGGTCTTACACTGAC
93844881 ACCTCTATAG
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
95 1 0.01
96 36 0.50
97 2 0.03
99 33 0.46
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (96 bp):
GATGCCATGTCCCAAACACGGTCTTACACTAGCTCATCCATCAAGTCGATGCCACGTCCCAGACA
TGGTCTTACACTGACTATTGAAATCGAGGCC
Found at i:93844911 original size:48 final size:49
Alignment explanation
Indices: 93844748--93844965 Score: 197
Period size: 48 Copynumber: 4.6 Consensus size: 49
93844738 TCCATCAAGT
* *
93844748 CGATGCCACGTCCCAGACATGGTCTTACACTGACTA-TTGA-AATCGAG-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACTT-ACTATCG-GTGC
* * * *
93844797 CGATGCCATGTCCCAAACACGGTCTTACACT-AGCTCTTACATATCCGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CACTTAC-TATCGGTGC
* *
93844847 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCT-CTATAGGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACTTACTATCGGTGC
* * * *
93844895 CAATGCCATGTCCCAGATATGGTCTTACACTGACAC--A-TCTC-GTAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACTTACTATCGGT-GC
93844941 CGATG-CATGTCCCAGACAT-GTCTTA
1 CGATGCCATGTCCCAGACATGGTCTTA
93844966 TATTGGCTTA
Statistics
Matches: 142, Mismatches: 19, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
44 6 0.04
45 15 0.11
46 7 0.05
48 43 0.30
49 33 0.23
50 37 0.26
51 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACACTTACTATCGGTGC
Found at i:93851928 original size:20 final size:21
Alignment explanation
Indices: 93851891--93851929 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
93851881 ATATCCAAAT
* *
93851891 ATTTTTTTTGTTTCTTTTAGA
1 ATTTTGTTTGTTTATTTTAGA
93851912 ATTTTGTTT-TTTATTTTA
1 ATTTTGTTTGTTTATTTTA
93851930 TTTTTTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.15, C:0.03, G:0.08, T:0.74
Consensus pattern (21 bp):
ATTTTGTTTGTTTATTTTAGA
Found at i:93855956 original size:14 final size:14
Alignment explanation
Indices: 93855937--93855966 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
93855927 TTATATCGAG
93855937 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
93855951 ACCAATCCAATTCA
1 ACCAATCCAAATCA
93855965 AC
1 AC
93855967 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:93865692 original size:27 final size:27
Alignment explanation
Indices: 93865654--93865716 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
93865644 ATCATCTCCT
*
93865654 CGTCACCTACTCTAAGTACCAATTTAC
1 CGTCACCCACTCTAAGTACCAATTTAC
93865681 CGTCACCCACTCTAAGTACCAATTTAC
1 CGTCACCCACTCTAAGTACCAATTTAC
93865708 CGTCACCCA
1 CGTCACCCA
93865717 TGTCAATTAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.29, C:0.38, G:0.08, T:0.25
Consensus pattern (27 bp):
CGTCACCCACTCTAAGTACCAATTTAC
Found at i:93875387 original size:17 final size:18
Alignment explanation
Indices: 93875356--93875390 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
93875346 CGTGTGGTTC
93875356 ACCCGTGTGGGCCCACAT
1 ACCCGTGTGGGCCCACAT
93875374 ACCCGTGT-GGCCCACAT
1 ACCCGTGTGGGCCCACAT
93875391 GGCCCAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.17, C:0.40, G:0.26, T:0.17
Consensus pattern (18 bp):
ACCCGTGTGGGCCCACAT
Found at i:93876832 original size:5 final size:5
Alignment explanation
Indices: 93876822--93876852 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
93876812 GTAGACCATA
93876822 AAAAT AAAAT AAAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT
93876853 TTTTTCTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:93876835 original size:11 final size:11
Alignment explanation
Indices: 93876819--93876852 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
93876809 ATTGTAGACC
93876819 ATAAAAATAAA
1 ATAAAAATAAA
93876830 ATAAAAATAAA
1 ATAAAAATAAA
93876841 AT-AAAATAAA
1 ATAAAAATAAA
93876851 AT
1 AT
93876853 TTTTTCTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (11 bp):
ATAAAAATAAA
Found at i:93882513 original size:12 final size:10
Alignment explanation
Indices: 93882490--93882532 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
93882480 TTTATTACTT
93882490 AAAAAATATA
1 AAAAAATATA
*
93882500 AAAAAATATT
1 AAAAAATATA
*
93882510 TAAAAATA-A
1 AAAAAATATA
*
93882519 AAAAAATTTA
1 AAAAAATATA
93882529 AAAA
1 AAAA
93882533 GTTCCACACA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 6 0.22
10 21 0.78
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (10 bp):
AAAAAATATA
Found at i:93882522 original size:17 final size:17
Alignment explanation
Indices: 93882492--93882532 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 17
93882482 TATTACTTAA
93882492 AAAATATAAAAAAATATTT
1 AAAA-ATAAAAAAA-ATTT
93882511 AAAAATAAAAAAAATTT
1 AAAAATAAAAAAAATTT
93882528 AAAAA
1 AAAAA
93882533 GTTCCACACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 9 0.41
18 9 0.41
19 4 0.18
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAAATAAAAAAAATTT
Found at i:93884562 original size:12 final size:12
Alignment explanation
Indices: 93884545--93884583 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
93884535 AAGTTAAGAA
93884545 AGAAAAAGAAAG
1 AGAAAAAGAAAG
93884557 AGAAAAAGAAAG
1 AGAAAAAGAAAG
*
93884569 A-AAGAAGAAATG
1 AGAAAAAGAAA-G
93884581 AGA
1 AGA
93884584 GACACACGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 8 0.33
12 15 0.62
13 1 0.04
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.03
Consensus pattern (12 bp):
AGAAAAAGAAAG
Found at i:93884585 original size:26 final size:22
Alignment explanation
Indices: 93884540--93884583 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 22
93884530 ATGCAAAGTT
93884540 AAGAAAGAAAAAGAAAGAGAAA
1 AAGAAAGAAAAAGAAAGAGAAA
93884562 AAGAAAGAAAGAAGAAATGAGA
1 AAGAAAGAAA-AAGAAA-GAGA
93884584 GACACACGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
23 6 0.30
24 4 0.20
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (22 bp):
AAGAAAGAAAAAGAAAGAGAAA
Found at i:93896264 original size:20 final size:18
Alignment explanation
Indices: 93896217--93896265 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
93896207 CAAGATAAAA
93896217 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
93896234 ATTAAGA-TAATCATTCTAAT
1 ATTAA-ATTAAT-ATT-TAAT
93896254 ATTAAATTAATA
1 ATTAAATTAATA
93896266 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 5 0.19
20 13 0.48
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:93896306 original size:32 final size:30
Alignment explanation
Indices: 93896250--93896319 Score: 88
Period size: 32 Copynumber: 2.3 Consensus size: 30
93896240 ATAATCATTC
*
93896250 TAATATTAAATTAATAAAATACTATTAAGA
1 TAATATTAAATTAATAAAATACTATTAAAA
*
93896280 TAAGTATTAAATTTAATATTAA-ACTATTAAAA
1 TAA-TATTAAA-TTAATA-AAATACTATTAAAA
93896312 TAATATTA
1 TAATATTA
93896320 TTTTTGGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 3 0.09
31 12 0.34
32 18 0.51
33 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (30 bp):
TAATATTAAATTAATAAAATACTATTAAAA
Found at i:93898350 original size:27 final size:27
Alignment explanation
Indices: 93898320--93898390 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
93898310 TTGTCCCTGC
93898320 GGACTACCCCATGTTTACTATCTCGAT
1 GGACTACCCCATGTTTACTATCTCGAT
** * *
93898347 GGACTACCATATGTTTACTGTTTCGAT
1 GGACTACCCCATGTTTACTATCTCGAT
*
93898374 AGACTACCCCATGTTTA
1 GGACTACCCCATGTTTA
93898391 TTGTCCTAGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.35
Consensus pattern (27 bp):
GGACTACCCCATGTTTACTATCTCGAT
Found at i:93903809 original size:23 final size:23
Alignment explanation
Indices: 93903765--93903809 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
93903755 TTTAGTTTGG
* *
93903765 ATTATCCTTCAGAGATCCACAAT
1 ATTATCATTCAGAGATCAACAAT
93903788 ATTATCATTC-GAGATGCAACAA
1 ATTATCATTCAGAGAT-CAACAA
93903810 ATTGAGGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (23 bp):
ATTATCATTCAGAGATCAACAAT
Found at i:93909688 original size:21 final size:21
Alignment explanation
Indices: 93909663--93909711 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
93909653 TGTCTTATAT
93909663 ACTTAATAAATATTTAATTAA
1 ACTTAATAAATATTTAATTAA
* * ** *
93909684 TCTTATTTTATTTTTAATTAA
1 ACTTAATAAATATTTAATTAA
93909705 ACTTAAT
1 ACTTAAT
93909712 TAGATTAATG
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (21 bp):
ACTTAATAAATATTTAATTAA
Found at i:93909939 original size:20 final size:20
Alignment explanation
Indices: 93909916--93909955 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
93909906 TTATACTGAC
*
93909916 CTTGTAAATATTAAATAATA
1 CTTGTAAATACTAAATAATA
93909936 CTTGTAAATACTAAATAATA
1 CTTGTAAATACTAAATAATA
93909956 TTTACGGACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.38
Consensus pattern (20 bp):
CTTGTAAATACTAAATAATA
Found at i:93912392 original size:68 final size:69
Alignment explanation
Indices: 93912238--93912393 Score: 271
Period size: 68 Copynumber: 2.3 Consensus size: 69
93912228 ACATGAAATG
93912238 ATAATATAATATATATACATGCATAGAAAATATATATTTGAAAATAAACTATATAAAAAGGTTAA
1 ATAATAT-ATATATATACATGCATAGAAAATATATATTTGAAAATAAACTATATAAAAAGGTTAA
93912303 ATATT
65 ATATT
*
93912308 ATAATA-ATATATATACATGCATAGAAAATATATATTTGAAAATAAACTATATAGAAAGGTTAAA
1 ATAATATATATATATACATGCATAGAAAATATATATTTGAAAATAAACTATATAAAAAGGTTAAA
93912372 TATT
66 TATT
*
93912376 ATAATATATA-AAATACAT
1 ATAATATATATATATACAT
93912394 AATCAAATGT
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
68 74 0.89
69 3 0.04
70 6 0.07
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.34
Consensus pattern (69 bp):
ATAATATATATATATACATGCATAGAAAATATATATTTGAAAATAAACTATATAAAAAGGTTAAA
TATT
Found at i:93912716 original size:22 final size:21
Alignment explanation
Indices: 93912681--93912738 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
93912671 AAAGGATATC
* * *
93912681 TACAAATTAAATCTCTAATAT
1 TACAAATCATATCTCTAAAAT
93912702 TACAAAATCATATCTTCTAAAAT
1 TAC-AAATCATATC-TCTAAAAT
* *
93912725 TGCATATCATATCT
1 TACAAATCATATCT
93912739 AAGATTGCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAAAT
Found at i:93912745 original size:19 final size:19
Alignment explanation
Indices: 93912717--93912804 Score: 119
Period size: 19 Copynumber: 4.8 Consensus size: 19
93912707 AATCATATCT
*
93912717 TCTAAAATTGCATATCATA
1 TCTAAGATTGCATATCATA
93912736 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
93912754 TCTAAGATAG--TATCATA
1 TCTAAGATTGCATATCATA
*
93912771 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
*
93912790 ACTAAGATTGCATAT
1 TCTAAGATTGCATAT
93912805 TATTGAAGAT
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
17 15 0.25
18 15 0.25
19 31 0.51
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:93912768 original size:35 final size:36
Alignment explanation
Indices: 93912729--93912797 Score: 113
Period size: 35 Copynumber: 1.9 Consensus size: 36
93912719 TAAAATTGCA
* *
93912729 TATCATATCTAAGATTGCA-ATCATATCTAAGATAG
1 TATCATATCTAAGATTGCATATCACAACTAAGATAG
93912764 TATCATATCTAAGATTGCATATCACAACTAAGAT
1 TATCATATCTAAGATTGCATATCACAACTAAGAT
93912798 TGCATATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 19 0.61
36 12 0.39
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (36 bp):
TATCATATCTAAGATTGCATATCACAACTAAGATAG
Found at i:93916885 original size:32 final size:34
Alignment explanation
Indices: 93916849--93916913 Score: 89
Period size: 32 Copynumber: 2.0 Consensus size: 34
93916839 TAACAGTGGT
*
93916849 ACTGGGCCAGAGCCC-TT-TTCAGATTACAATAA
1 ACTGGGCCAGAGCCCATTATTCAGATAACAATAA
**
93916881 ACTGGGCCTTAGCCCATTATTCAGATAACAATA
1 ACTGGGCCAGAGCCCATTATTCAGATAACAATA
93916914 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 13 0.46
33 2 0.07
34 13 0.46
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (34 bp):
ACTGGGCCAGAGCCCATTATTCAGATAACAATAA
Found at i:93918788 original size:26 final size:26
Alignment explanation
Indices: 93918758--93918865 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
93918748 TGAAATTCCC
93918758 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* **
93918784 ATCATGGAACATATAAATAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
93918810 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
93918836 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
93918862 ATCA
1 ATCA
93918866 ATTTGCATTA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.39, C:0.25, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:93921250 original size:16 final size:16
Alignment explanation
Indices: 93921231--93921261 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
93921221 TTTCACTAAA
93921231 ATCATTTAATAAATTC
1 ATCATTTAATAAATTC
*
93921247 ATCATTTAATGAATT
1 ATCATTTAATAAATT
93921262 AAAAGCTTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.03, T:0.45
Consensus pattern (16 bp):
ATCATTTAATAAATTC
Found at i:93921771 original size:30 final size:30
Alignment explanation
Indices: 93921737--93921797 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
93921727 GAACTATCAA
93921737 AACGTTAAAATTTTATGACGAAACTTTAAT
1 AACGTTAAAATTTTATGACGAAACTTTAAT
93921767 AACGTTAAAATTTTATGACGAAACTTTAAT
1 AACGTTAAAATTTTATGACGAAACTTTAAT
93921797 A
1 A
93921798 CTAACTTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (30 bp):
AACGTTAAAATTTTATGACGAAACTTTAAT
Found at i:93923650 original size:25 final size:25
Alignment explanation
Indices: 93923622--93923679 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
93923612 AGTTGTAAAA
* *
93923622 GGTAAGCTCATACAACCTGAATATC
1 GGTAAACTCATACAACCTAAATATC
* * *
93923647 GGTAAACTCATGCGAGCTAAATATC
1 GGTAAACTCATACAACCTAAATATC
93923672 GGTAAACT
1 GGTAAACT
93923680 TTCTCAAGCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (25 bp):
GGTAAACTCATACAACCTAAATATC
Found at i:93932593 original size:17 final size:18
Alignment explanation
Indices: 93932573--93932610 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
93932563 TGGCATGCCA
93932573 ATTGTATTAAAAT-ATTT
1 ATTGTATTAAAATAATTT
*
93932590 ATTGTATTAAATTAATTT
1 ATTGTATTAAAATAATTT
93932608 ATT
1 ATT
93932611 AATAAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (18 bp):
ATTGTATTAAAATAATTT
Found at i:93932940 original size:12 final size:12
Alignment explanation
Indices: 93932923--93932955 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
93932913 CGACCTGCCC
93932923 ATATTAATTTTT
1 ATATTAATTTTT
93932935 ATATT-ATTTTT
1 ATATTAATTTTT
93932946 ATA-TAATTTT
1 ATATTAATTTT
93932956 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:93933123 original size:30 final size:30
Alignment explanation
Indices: 93933080--93933137 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
93933070 TTTAACAAGC
*
93933080 AAATGCTTCTAAAATAATAACAAAATTAGT
1 AAATGCTTCTAAAATAATAAAAAAATTAGT
93933110 AAATGTCTT-TAAAATAATAAAAAAATTA
1 AAATG-CTTCTAAAATAATAAAAAAATTA
93933138 ACAATAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 23 0.88
31 3 0.12
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.31
Consensus pattern (30 bp):
AAATGCTTCTAAAATAATAAAAAAATTAGT
Found at i:93935118 original size:32 final size:32
Alignment explanation
Indices: 93935077--93935143 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
93935067 CGTTTATTAG
93935077 TTTTGAAATCTTTCTAACATCCCTGTATAATT
1 TTTTGAAATCTTTCTAACATCCCTGTATAATT
*
93935109 TTTTGAAATCTTTCTTACATCCCTGTATAATT
1 TTTTGAAATCTTTCTAACATCCCTGTATAATT
93935141 TTT
1 TTT
93935144 CAGCTTATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.25, C:0.18, G:0.06, T:0.51
Consensus pattern (32 bp):
TTTTGAAATCTTTCTAACATCCCTGTATAATT
Found at i:93943769 original size:24 final size:24
Alignment explanation
Indices: 93943742--93943817 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
93943732 ATAAAAGAAG
93943742 TAGAGATCTAATTCTAATAACTAC
1 TAGAGATCTAATTCTAATAACTAC
* *
93943766 TAGA-ATTTAAAGTATACCAA-AACT--
1 TAGAGATCT-AA-T-T-CTAATAACTAC
93943790 TAGAGATCTAATTCTAATAACTAC
1 TAGAGATCTAATTCTAATAACTAC
93943814 TAGA
1 TAGA
93943818 ATTTAAAGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 16
0.67 0.07 0.27
Matches are distributed among these distances:
21 3 0.08
22 5 0.12
23 4 0.10
24 16 0.40
25 4 0.10
26 5 0.12
27 3 0.08
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (24 bp):
TAGAGATCTAATTCTAATAACTAC
Found at i:93943813 original size:48 final size:48
Alignment explanation
Indices: 93943742--93943838 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
93943732 ATAAAAGAAG
93943742 TAGAGATCTAATTCTAATAACTACTAGAATTTAAAGTATACCAAAACT
1 TAGAGATCTAATTCTAATAACTACTAGAATTTAAAGTATACCAAAACT
93943790 TAGAGATCTAATTCTAATAACTACTAGAATTTAAAGTATACCAAAACT
1 TAGAGATCTAATTCTAATAACTACTAGAATTTAAAGTATACCAAAACT
93943838 T
1 T
93943839 TATCTTGATC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.32
Consensus pattern (48 bp):
TAGAGATCTAATTCTAATAACTACTAGAATTTAAAGTATACCAAAACT
Found at i:93950344 original size:47 final size:47
Alignment explanation
Indices: 93950288--93950432 Score: 131
Period size: 47 Copynumber: 3.1 Consensus size: 47
93950278 ATAAGAACAT
* *
93950288 TTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TTTAATATTAAGAATTTTATGAAATTATATATAATTATTAAATTATA
** * *
93950335 TTTAATATTAATTA-TTT-T-AAATTGTATA-AATTCATATAAGA--AAA
1 TTTAATATTAAGAATTTTATGAAATTATATATAATT-AT-TAA-ATTATA
* * *
93950379 TTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TTTAATATTAAGAATTTTATGAAATTATATATAATTATTAAATTATA
*
93950426 TGTAATA
1 TTTAATA
93950433 ATAATTATTT
Statistics
Matches: 74, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
43 3 0.04
44 23 0.31
45 8 0.11
46 8 0.11
47 29 0.39
48 3 0.04
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (47 bp):
TTTAATATTAAGAATTTTATGAAATTATATATAATTATTAAATTATA
Found at i:93950407 original size:91 final size:91
Alignment explanation
Indices: 93950269--93950476 Score: 335
Period size: 91 Copynumber: 2.3 Consensus size: 91
93950259 TTGATTTTAG
* *
93950269 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
93950334 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
93950361 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
93950426 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
93950452 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
93950477 GTTATAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 92 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:93950445 original size:26 final size:28
Alignment explanation
Indices: 93950391--93950451 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
93950381 TATTATCAAG
* *
93950391 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
93950419 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
93950445 AATTATA
1 AATTATA
93950452 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:93950451 original size:44 final size:43
Alignment explanation
Indices: 93950309--93950451 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
93950299 GAATTTTATG
* *
93950309 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
93950353 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
93950400 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
93950444 AAATTATA
1 AAATTATA
93950452 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:93950569 original size:59 final size:57
Alignment explanation
Indices: 93950503--93950691 Score: 152
Period size: 59 Copynumber: 3.2 Consensus size: 57
93950493 ATTTTATTAA
93950503 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTAT-TTTTATAGT
* * ** * *
93950562 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAATT-TTATTA-A--
1 ATCATATATT-TTA-ATTA--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATTTTTATAGT
* * * *
93950623 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT-TTTTATAGT
93950682 ATCATATATT
1 ATCATATATT
93950692 ATGATTTGAG
Statistics
Matches: 99, Mismatches: 17, Indels: 28
0.69 0.12 0.19
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
59 22 0.22
60 4 0.04
61 12 0.12
63 4 0.04
64 5 0.05
65 6 0.06
66 17 0.17
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (57 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATTTTTATAGT
Found at i:93950600 original size:66 final size:64
Alignment explanation
Indices: 93950530--93950728 Score: 177
Period size: 66 Copynumber: 3.2 Consensus size: 64
93950520 AAATATATTT
93950530 AATATTAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTAT-TTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAA
93950595 G
64 G
* * * * * **
93950596 AATATTAATTATTAAGAATT-TTATTA-A--ATTATATATT-TTA-ATTA-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTATTTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAG
* * *
93950650 AATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTAT-TTAAATTAT-TTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAA
93950715 G
64 G
*
93950716 AATATTGATTATT
1 AATATTAATTATT
93950729 AAGAATTTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 29
0.68 0.13 0.20
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
58 1 0.01
59 12 0.12
60 4 0.04
61 11 0.11
62 1 0.01
63 3 0.03
64 5 0.05
65 7 0.07
66 27 0.27
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (64 bp):
AATATTAATTATTTAAATTATTTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAG
Found at i:93950616 original size:120 final size:120
Alignment explanation
Indices: 93950492--93950789 Score: 508
Period size: 120 Copynumber: 2.5 Consensus size: 120
93950482 AATTATTTTA
* * *
93950492 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
*
93950556 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
93950612 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
*
93950677 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
93950732 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
93950790 ATGATTAAAT
Statistics
Matches: 167, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
120 160 0.96
121 7 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:93950632 original size:61 final size:61
Alignment explanation
Indices: 93950565--93950752 Score: 190
Period size: 61 Copynumber: 3.1 Consensus size: 61
93950555 TTATAGTATC
93950565 ATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * * * *
93950626 ATATATTTTAATTATAATATATTTA-ATAATAATTATGTTAA-T-TT-A-TATTTTA-TAGTATC
1 ATATATTATGATTTTAGTAAATTCATATAAGAA-TA--TTAATTATTAAGAATTTTATTA-AATT
* *
93950685 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
93950746 ATATATT
1 ATATATT
93950753 TTAATTAAAA
Statistics
Matches: 95, Mismatches: 22, Indels: 20
0.69 0.16 0.15
Matches are distributed among these distances:
57 3 0.03
58 3 0.03
59 30 0.32
60 14 0.15
61 38 0.40
62 3 0.03
63 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:93950652 original size:15 final size:15
Alignment explanation
Indices: 93950617--93950668 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
93950607 TTAAGAATTT
*
93950617 TATTAAATTAT-ATA
1 TATTTAATTATAATA
93950631 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
93950645 TATTTAATAATAAT-
1 TATTTAATTATAATA
93950659 TATGTTAATT
1 TAT-TTAATT
93950669 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:93950749 original size:59 final size:58
Alignment explanation
Indices: 93950566--93950749 Score: 155
Period size: 59 Copynumber: 3.1 Consensus size: 58
93950556 TATAGTATCA
*
93950566 TATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
* * * * * *
93950625 TATA-TAT--TTTAATTATAATAT-ATTTAATAATAATTATGTTAATTTA-TATTTTA-TAGTAT
1 TATATTATGATTTAAGTA-AAT-TCATATAAGAAT-ATTA--TT-ATTAAGAATTTTATTA-AAT
*
93950684 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
93950745 TATAT
1 TATAT
93950750 ATTTTAATTA
Statistics
Matches: 95, Mismatches: 14, Indels: 32
0.67 0.10 0.23
Matches are distributed among these distances:
56 6 0.06
57 12 0.13
58 9 0.09
59 19 0.20
60 8 0.08
61 14 0.15
62 9 0.09
63 12 0.13
64 6 0.06
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (58 bp):
TATATTATGATTTAAGTAAATTCATATAAGAATATTATTATTAAGAATTTTATTAAAT
Found at i:93950761 original size:18 final size:17
Alignment explanation
Indices: 93950733--93950767 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
93950723 ATTATTAAGA
*
93950733 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
93950750 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
93950768 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:93951015 original size:45 final size:44
Alignment explanation
Indices: 93950932--93951022 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
93950922 ACCTCTATTC
* *
93950932 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACATCTATTCCATTA
*** *
93950976 CATTCAACCAAACAGTTGATTTGCTATTACACATCTATTCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACATCTATTCCATTA
93951021 CA
1 CA
93951023 CCTCTATTCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACATCTATTCCATTA
Found at i:93951022 original size:16 final size:16
Alignment explanation
Indices: 93951001--93951070 Score: 95
Period size: 16 Copynumber: 4.4 Consensus size: 16
93950991 TTGATTTGCT
* *
93951001 ATTACACATCTATTCC
1 ATTACACCTCTAATCC
*
93951017 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
93951033 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
93951049 AATACACCTCTAATCC
1 ATTACACCTCTAATCC
*
93951065 AATACA
1 ATTACA
93951071 GTGAACCAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:93953520 original size:22 final size:19
Alignment explanation
Indices: 93953473--93953541 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 19
93953463 ATATTGAAGT
* *
93953473 AATATAAAATATAATA-AA
1 AATATATAATATATTATAA
93953491 AATAATATAATATATATAGTAA
1 AAT-ATATAATATAT-TA-TAA
93953513 AATGATATAATATATTATAA
1 AAT-ATATAATATATTATAA
93953533 AATATATAA
1 AATATATAA
93953542 ATAAAATGTA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
18 3 0.07
19 15 0.34
20 8 0.18
21 2 0.05
22 16 0.36
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (19 bp):
AATATATAATATATTATAA
Found at i:93953569 original size:32 final size:34
Alignment explanation
Indices: 93953497--93953597 Score: 95
Period size: 33 Copynumber: 3.0 Consensus size: 34
93953487 TAAAAATAAT
*
93953497 ATAATATATATAGTAAAATGATATAATATATTATA
1 ATAATATATA-AATAAAATGATATAATATATTATA
93953532 A-AATATATAAATAAAATG-TATAATA-ATGTA-A
1 ATAATATATAAATAAAATGATATAATATAT-TATA
* *
93953563 ATAATATGATAAAAAATAAAGATA-ATATATATTAT
1 ATAATAT-ATAAATAA-AATGATATA-ATATATTAT
93953598 TTTTATATGC
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
31 4 0.07
32 14 0.25
33 15 0.27
34 12 0.22
35 8 0.15
36 2 0.04
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (34 bp):
ATAATATATAAATAAAATGATATAATATATTATA
Found at i:93957095 original size:18 final size:19
Alignment explanation
Indices: 93957074--93957111 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
93957064 ATTTTAAAAA
93957074 TATATAAAT-TTTGGAATT
1 TATATAAATATTTGGAATT
*
93957092 TATATAAATATTTTGAATT
1 TATATAAATATTTGGAATT
93957111 T
1 T
93957112 TAAAAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (19 bp):
TATATAAATATTTGGAATT
Found at i:93957104 original size:20 final size:19
Alignment explanation
Indices: 93957081--93957152 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 19
93957071 AAATATATAA
*
93957081 ATTTTGGAATTTATATAAA-T
1 ATTTT-GAATTT-TAAAAATT
93957101 ATTTTGAATTTTAAAAATT
1 ATTTTGAATTTTAAAAATT
* *
93957120 ATTTTAAAATTTTGAAAATT
1 ATTTT-GAATTTTAAAAATT
93957140 ATTTTGAACTTTT
1 ATTTTGAA-TTTT
93957153 TTATAATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.11
19 14 0.31
20 26 0.58
ACGTcount: A:0.39, C:0.01, G:0.07, T:0.53
Consensus pattern (19 bp):
ATTTTGAATTTTAAAAATT
Found at i:93957111 original size:19 final size:19
Alignment explanation
Indices: 93957074--93957124 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
93957064 ATTTTAAAAA
*
93957074 TATATAAAT-TTTGGAATT
1 TATATAAATATTTTGAATT
93957092 TATATAAATATTTTGAATT
1 TATATAAATATTTTGAATT
*
93957111 T-TAAAAATTATTTT
1 TATATAAA-TATTTT
93957125 AAAATTTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 14 0.48
19 15 0.52
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (19 bp):
TATATAAATATTTTGAATT
Found at i:93968188 original size:26 final size:26
Alignment explanation
Indices: 93968137--93968189 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
93968127 ATCTCCCTGA
** **
93968137 GTAAGGTTCAGGAGTTCCCTTTTATG
1 GTAAGGTTCAGGAACTCCCTCCTATG
93968163 GTAAGGTTCAGGAACTCCCTCCTATG
1 GTAAGGTTCAGGAACTCCCTCCTATG
93968189 G
1 G
93968190 GCATCCACGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (26 bp):
GTAAGGTTCAGGAACTCCCTCCTATG
Found at i:93968865 original size:17 final size:17
Alignment explanation
Indices: 93968845--93968879 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
93968835 TCTCTCTCTA
*
93968845 TTTTGCTACAGTCTCAG
1 TTTTACTACAGTCTCAG
*
93968862 TTTTACTACAGTTTCAG
1 TTTTACTACAGTCTCAG
93968879 T
1 T
93968880 ATATACTGCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (17 bp):
TTTTACTACAGTCTCAG
Found at i:93968943 original size:25 final size:24
Alignment explanation
Indices: 93968871--93968943 Score: 58
Period size: 25 Copynumber: 2.9 Consensus size: 24
93968861 GTTTTACTAC
* * *
93968871 AGTTTCAGTATATACTGCCTAGAGT
1 AGTTTCAGAATATACT-ACTACAGT
* *
93968896 -GTTTTCACAGTATACTACTTACAGT
1 AG-TTTCAGAATATACTAC-TACAGT
93968921 AGTTTCAGAATATACTATCTACA
1 AGTTTCAGAATATACTA-CTACA
93968944 ATATTTTTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
24 2 0.05
25 33 0.89
26 2 0.05
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (24 bp):
AGTTTCAGAATATACTACTACAGT
Found at i:93978547 original size:9 final size:9
Alignment explanation
Indices: 93978533--93978558 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
93978523 AACAAATTAA
93978533 AAAGAAAAG
1 AAAGAAAAG
93978542 AAAGAAAAG
1 AAAGAAAAG
93978551 AAAGAAAA
1 AAAGAAAA
93978559 AGGAGAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (9 bp):
AAAGAAAAG
Found at i:93978964 original size:29 final size:30
Alignment explanation
Indices: 93978913--93978974 Score: 101
Period size: 29 Copynumber: 2.1 Consensus size: 30
93978903 ATTTATTTTA
93978913 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTCTTATTATTTTAGAA-GCAT
93978943 TTGTTAATTTT-TTATTATTTTAGAAGCAT
1 TTGTTAATTTTCTTATTATTTTAGAAGCAT
93978972 TTG
1 TTG
93978975 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
29 18 0.58
30 13 0.42
ACGTcount: A:0.26, C:0.05, G:0.11, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAGAAGCAT
Found at i:93980841 original size:31 final size:31
Alignment explanation
Indices: 93980806--93980867 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
93980796 GGTGATGTTA
* * *
93980806 AAATTTGTAATGGTATGTGCCTAGGAAGTCT
1 AAATTTGCAATGGCATGTACCTAGGAAGTCT
93980837 AAATTTGCAATGGCATGTACCTAGGAAGTCT
1 AAATTTGCAATGGCATGTACCTAGGAAGTCT
93980868 TTGTTTGAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (31 bp):
AAATTTGCAATGGCATGTACCTAGGAAGTCT
Found at i:93981733 original size:17 final size:17
Alignment explanation
Indices: 93981708--93981743 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
93981698 AATCAAATAA
*
93981708 TTTTAAATTTTTAAATT
1 TTTTAAATTTTAAAATT
*
93981725 TTTTGAATTTTAAAATT
1 TTTTAAATTTTAAAATT
93981742 TT
1 TT
93981744 AATTTTGATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (17 bp):
TTTTAAATTTTAAAATT
Found at i:93991758 original size:40 final size:40
Alignment explanation
Indices: 93991705--93991896 Score: 253
Period size: 40 Copynumber: 4.8 Consensus size: 40
93991695 TATTACCACA
* * * * *
93991705 AGCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
* * *
93991745 CGCACGAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
*
93991785 CGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
93991825 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
93991865 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATC
93991897 TCATTCAAAT
Statistics
Matches: 140, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
40 136 0.97
41 4 0.03
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.22
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
Found at i:93999729 original size:40 final size:40
Alignment explanation
Indices: 93999499--93999730 Score: 288
Period size: 40 Copynumber: 5.8 Consensus size: 40
93999489 TATTACCACA
* * * * * *
93999499 AGCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACT
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATC-ACT
* * * *
93999539 CGCACGAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATC-ACT
* * *
93999579 CGCACAAATGCCTTCGGGTCTTAGCCTGGATCAAATCACT
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
* *
93999619 AGAAAAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
*
93999659 AGCAAAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
93999699 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
1 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
93999731 TCATTCAAAT
Statistics
Matches: 174, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
40 170 0.98
41 4 0.02
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
Found at i:94010643 original size:30 final size:31
Alignment explanation
Indices: 94010607--94010675 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
94010597 CAAGAAAGTC
**
94010607 GCTACAAAC-CTTTTACAAAACACAAAAATT
1 GCTACAAACACTTCAACAAAACACAAAAATT
** *
94010637 GCTAC-AACACTTCAATGAAACACACAAATT
1 GCTACAAACACTTCAACAAAACACAAAAATT
94010667 GCTACAAAC
1 GCTACAAAC
94010676 GTTCAACTTG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
29 3 0.09
30 26 0.81
31 3 0.09
ACGTcount: A:0.48, C:0.26, G:0.06, T:0.20
Consensus pattern (31 bp):
GCTACAAACACTTCAACAAAACACAAAAATT
Found at i:94010681 original size:30 final size:30
Alignment explanation
Indices: 94010624--94010681 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
94010614 ACCTTTTACA
94010624 AAACACAAAAATTGCTACAACACTTCAATG
1 AAACACAAAAATTGCTACAACACTTCAATG
*
94010654 AAACACACAAATTGCTACAA-ACGTTCAA
1 AAACACAAAAATTGCTACAACAC-TTCAA
94010682 CTTGAATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.50, C:0.24, G:0.07, T:0.19
Consensus pattern (30 bp):
AAACACAAAAATTGCTACAACACTTCAATG
Found at i:94013986 original size:34 final size:34
Alignment explanation
Indices: 94013948--94014017 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
94013938 TGTGATAATT
94013948 ATAATTATAATTCAA-TTTAAAATTATTATTAAAA
1 ATAATTATAATTCAATTTTAAAATTATTA-TAAAA
* *
94013982 ATAATTATAATTTAATTTTGAAATTATTATAAAA
1 ATAATTATAATTCAATTTTAAAATTATTATAAAA
94014016 AT
1 AT
94014018 GACTTAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 21 0.64
35 12 0.36
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (34 bp):
ATAATTATAATTCAATTTTAAAATTATTATAAAA
Found at i:94017786 original size:49 final size:49
Alignment explanation
Indices: 94017683--94017909 Score: 184
Period size: 49 Copynumber: 4.7 Consensus size: 49
94017673 GTTAAGTTGC
* *
94017683 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAGGC
1 CGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATATAGCGAGGA
* * *
94017733 CGATGCCATGTCCCATACAGGTCTTACACTGGCTCTCATCTATCG-GTGA
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGAG-GA
* * * * *
94017782 CGATGCCATGTCCCAGACAGGTTTTACACT-G-ACACACA-A-C-AAG-
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGAGGA
* * * *
94017825 CTGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TGTATATCGCGAGGT
1 C-GATGCCATGTCCCAGACAGGTCTTACACTGGCTCT-CATATAGCGAGGA
* * * * *
94017875 CGATG-CATATTCTAGACATGTCTTACACTAGCTCT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCT
94017910 TGTCTCAATG
Statistics
Matches: 143, Mismatches: 23, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 29 0.20
45 2 0.01
46 3 0.02
47 3 0.02
48 27 0.19
49 59 0.41
50 19 0.13
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGAGGA
Found at i:94017961 original size:94 final size:95
Alignment explanation
Indices: 94017827--94018003 Score: 239
Period size: 94 Copynumber: 1.9 Consensus size: 95
94017817 ACAACAAGCT
** * * * *
94017827 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCGAGGTCGATGCATATTCTAGAC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTAAATATCGCGAGGCCGATGCATATCCCAAAC
94017892 ATGTCTTACACTAGCTCTTGTCTCAATGCC
66 ATGTCTTACACTAGCTCTTGTCTCAATGCC
* * * * *
94017922 GATG-CATGTCCCAGACATGTCTTAGACTCGCTTAAATATCTCGAGGCCGATGCATGTCCCAAAC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTAAATATCGCGAGGCCGATGCATATCCCAAAC
*
94017986 ATGTCTTATACTAGCTCT
66 ATGTCTTACACTAGCTCT
94018004 CATGCTGTGG
Statistics
Matches: 70, Mismatches: 12, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
94 66 0.94
95 4 0.06
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (95 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTTAAATATCGCGAGGCCGATGCATATCCCAAAC
ATGTCTTACACTAGCTCTTGTCTCAATGCC
Found at i:94017978 original size:48 final size:46
Alignment explanation
Indices: 94017681--94018001 Score: 188
Period size: 48 Copynumber: 6.8 Consensus size: 46
94017671 GGGTTAAGTT
* **
94017681 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-TT-ATATCTCGAG
* * * * *
94017731 GCCGATGCCATGTCCCATACAGGTCTTACACTGGCTCTCATCTATCG-G
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCT-T-ATATCTCGAG
* * * * * *
94017779 TGACGATGCCATGTCCCAGACAGGTTTTACACT-GAC--ACA-CAAC-AA
1 -GCCGATG-CATGTCCCAGACATGTCTTACACTAG-CTTATATC-TCGAG
* * *
94017824 GCTGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCGAG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGC-T-TATATCTCGAG
* * * * * * *
94017873 GTCGATGCATATTCTAGACATGTCTTACACTAGCTCT-TGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TATATCTCGAG
* *
94017919 GCCGATGCATGTCCCAGACATGTCTTAGACTCGCTTAAATATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTT--ATATCTCGAG
* *
94017967 GCCGATGCATGTCCCAAACATGTCTTATACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
94018002 CTCATGCTGT
Statistics
Matches: 215, Mismatches: 41, Indels: 32
0.75 0.14 0.11
Matches are distributed among these distances:
44 30 0.14
45 4 0.02
46 34 0.16
47 2 0.01
48 67 0.31
49 58 0.27
50 20 0.09
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATATCTCGAG
Found at i:94030562 original size:49 final size:49
Alignment explanation
Indices: 94030502--94030611 Score: 141
Period size: 49 Copynumber: 2.2 Consensus size: 49
94030492 TCTCAAACAT
*
94030502 GGTCTTACACTGGCTTTCATACAGCGAG-GTCGATGCCATGTCACAGACA
1 GGTCTTACACTGGCTCTCATACAGCG-GTGTCGATGCCATGTCACAGACA
** * * * *
94030551 GGTCTTACACTGGCTCTCATTTATCGGTGTCGATGGCATGTCCCAGAGA
1 GGTCTTACACTGGCTCTCATACAGCGGTGTCGATGCCATGTCACAGACA
94030600 GGTCTTACACTG
1 GGTCTTACACTG
94030612 ACACACAACA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
48 1 0.02
49 52 0.98
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.28
Consensus pattern (49 bp):
GGTCTTACACTGGCTCTCATACAGCGGTGTCGATGCCATGTCACAGACA
Found at i:94030737 original size:46 final size:45
Alignment explanation
Indices: 94030671--94030797 Score: 168
Period size: 46 Copynumber: 2.8 Consensus size: 45
94030661 TATATCGCGA
* *
94030671 GGCCAATGCATGTCCTAGACATGTCTTAAACTAGCTCT-TGTCTCAAT
1 GGCCAATGCATGTCCCAGACATGTCTTACACTAGCTCTATGT-T--AT
*
94030718 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATGTTAT
1 GGCCAATGCATGTCCCAGACATGTCTTACACTAGCTCT-ATGTTAT
*
94030763 GGCTAATGCATGTCCCAGACATGTCTTACACTAGC
1 GGCCAATGCATGTCCCAGACATGTCTTACACTAGC
94030798 ACACATATCA
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
45 2 0.03
46 66 0.92
47 1 0.01
48 3 0.04
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (45 bp):
GGCCAATGCATGTCCCAGACATGTCTTACACTAGCTCTATGTTAT
Found at i:94042068 original size:35 final size:35
Alignment explanation
Indices: 94042019--94042095 Score: 111
Period size: 35 Copynumber: 2.2 Consensus size: 35
94042009 TATCTATATC
*
94042019 TGTATCTAAGATGGGCTTAGGCCCAAATATGTATT
1 TGTATCTAAGATGGGCTTAGGCCCAAATATGCATT
* *
94042054 TGTATCTGAA-ATGGGCTTGGGCCCGAATATGCATT
1 TGTATCT-AAGATGGGCTTAGGCCCAAATATGCATT
94042089 TGTATCT
1 TGTATCT
94042096 CTGATGAGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 36 0.95
36 2 0.05
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (35 bp):
TGTATCTAAGATGGGCTTAGGCCCAAATATGCATT
Found at i:94045148 original size:26 final size:26
Alignment explanation
Indices: 94045119--94045192 Score: 103
Period size: 26 Copynumber: 2.8 Consensus size: 26
94045109 CTCGTTATAT
*
94045119 GGCTCTTCGTGAGCTTCCCTATTAAA
1 GGCTCTTTGTGAGCTTCCCTATTAAA
***
94045145 GGCTCTTTGTGAGCTTCTGGATTAAA
1 GGCTCTTTGTGAGCTTCCCTATTAAA
*
94045171 GGCTCTTTGTGAGCTTTCCTAT
1 GGCTCTTTGTGAGCTTCCCTAT
94045193 ATGGCTCGCT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.39
Consensus pattern (26 bp):
GGCTCTTTGTGAGCTTCCCTATTAAA
Found at i:94055751 original size:20 final size:19
Alignment explanation
Indices: 94055705--94055757 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
94055695 ATACATATTT
94055705 AATTATTTATA-TTTAATA
1 AATTATTTATATTTTAATA
*
94055723 ATATAATTTATTATTTTAATA
1 A-ATTATTTA-TATTTTAATA
94055744 AATTATTTAATATT
1 AATTATTT-ATATT
94055758 ACAATTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 1 0.03
19 7 0.24
20 12 0.41
21 9 0.31
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
AATTATTTATATTTTAATA
Found at i:94055752 original size:33 final size:31
Alignment explanation
Indices: 94055714--94055776 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
94055704 TAATTATTTA
*
94055714 TATTTAATAATATAATTTATTATTTTAATAAAT
1 TATTTAATAATACAA-TT-TTATTTTAATAAAT
*
94055747 TATTTAATATTACAATTTTATTTTAATAAA
1 TATTTAATAATACAATTTTATTTTAATAAA
94055777 AAATTAACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 13 0.46
32 2 0.07
33 13 0.46
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (31 bp):
TATTTAATAATACAATTTTATTTTAATAAAT
Found at i:94057547 original size:17 final size:16
Alignment explanation
Indices: 94057525--94057579 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 16
94057515 TAAATATAAA
94057525 TTATTAATTATAATTAT
1 TTATTAATTAT-ATTAT
94057542 TTATT-ATT-TATTAT
1 TTATTAATTATATTAT
* *
94057556 TTTTTAATTA-ATTTT
1 TTATTAATTATATTAT
*
94057571 TTATCAATT
1 TTATTAATT
94057580 GGCCCATAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
14 9 0.28
15 15 0.47
16 3 0.09
17 5 0.16
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (16 bp):
TTATTAATTATATTAT
Found at i:94062737 original size:17 final size:18
Alignment explanation
Indices: 94062697--94062740 Score: 65
Period size: 17 Copynumber: 2.5 Consensus size: 18
94062687 AGTAAAGTAA
94062697 ATTTT-GTTTATTATTTT
1 ATTTTAGTTTATTATTTT
94062714 ATTTTTAGTTTATT-TTTT
1 A-TTTTAGTTTATTATTTT
94062732 ATTTTAGTT
1 ATTTTAGTT
94062741 GGGGGAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.36
18 9 0.36
19 7 0.28
ACGTcount: A:0.18, C:0.00, G:0.07, T:0.75
Consensus pattern (18 bp):
ATTTTAGTTTATTATTTT
Found at i:94063502 original size:145 final size:145
Alignment explanation
Indices: 94063239--94063529 Score: 546
Period size: 145 Copynumber: 2.0 Consensus size: 145
94063229 ATTTTAGTGA
* *
94063239 TAGGAAAATGAGACTTTCAGTCAATTTTAGTGTGGTTTCGTGACCACACGGGTGGCCACACAGGC
1 TAGGAAAACGAGACTTTCAGTCAATTTCAGTGTGGTTTCGTGACCACACGGGTGGCCACACAGGC
*
94063304 GTGTGCCCCCACACGGACGGTTCACCCGGTAGTGTGCAATTGGAATTTAGGGTTTTTAGGATAAT
66 GTGTGCCCCCACACGGACGGTTCACCCGGCAGTGTGCAATTGGAATTTAGGGTTTTTAGGATAAT
94063369 TTGGGTGCCACACGG
131 TTGGGTGCCACACGG
94063384 TAGGAAAACGAGACTTTCAGTCAATTTCAGTGTGGTTTCGTGACCACACGGGTGGCCACACAGGC
1 TAGGAAAACGAGACTTTCAGTCAATTTCAGTGTGGTTTCGTGACCACACGGGTGGCCACACAGGC
*
94063449 GTGTGCCCCCACACGGACGGTTCACCCGGCGGTGTGCAATTGGAATTTAGGGTTTTTAGGATAAT
66 GTGTGCCCCCACACGGACGGTTCACCCGGCAGTGTGCAATTGGAATTTAGGGTTTTTAGGATAAT
94063514 TTGGGTGCCACACGG
131 TTGGGTGCCACACGG
94063529 T
1 T
94063530 CGTGTGGCTG
Statistics
Matches: 142, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
145 142 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (145 bp):
TAGGAAAACGAGACTTTCAGTCAATTTCAGTGTGGTTTCGTGACCACACGGGTGGCCACACAGGC
GTGTGCCCCCACACGGACGGTTCACCCGGCAGTGTGCAATTGGAATTTAGGGTTTTTAGGATAAT
TTGGGTGCCACACGG
Found at i:94065427 original size:23 final size:24
Alignment explanation
Indices: 94065400--94065444 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
94065390 AAAATCAAAT
*
94065400 GAGC-ACATACACAAAATTTAGCA
1 GAGCAACAGACACAAAATTTAGCA
94065423 GAGCAACAGACACAAAATTTAG
1 GAGCAACAGACACAAAATTTAG
94065445 TTGAACGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.49, C:0.20, G:0.16, T:0.16
Consensus pattern (24 bp):
GAGCAACAGACACAAAATTTAGCA
Found at i:94066589 original size:60 final size:62
Alignment explanation
Indices: 94066505--94066637 Score: 191
Period size: 60 Copynumber: 2.2 Consensus size: 62
94066495 ATACTAAACT
* * * * *
94066505 AAACAC-AACAATTTATAACTTAATCCTAAATTACTAATAATTTAATTTTAAAATAATTA-C
1 AAACACAAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTATA
94066565 AAACACAAAAAATTT-TAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTATA
1 AAACACAAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTATA
*
94066626 AAAAACAAAAAA
1 AAACACAAAAAA
94066638 AATTACATTC
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
60 47 0.72
61 18 0.28
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (62 bp):
AAACACAAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTATA
Found at i:94066835 original size:24 final size:23
Alignment explanation
Indices: 94066806--94066868 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 23
94066796 TACATTACCT
94066806 TTTTTTTTCTTCTTC-TTCTCTTC
1 TTTTTTTTCTTCTTCTTTCTC-TC
*
94066829 TTCTTTTTTCTTCTCCTTTCTCTC
1 TT-TTTTTTCTTCTTCTTTCTCTC
*
94066853 TTTTCTTTCTCTCTTC
1 TTTTTTTTCT-TCTTC
94066869 CGGTGTGTGG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
23 9 0.26
24 20 0.59
25 5 0.15
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (23 bp):
TTTTTTTTCTTCTTCTTTCTCTC
Found at i:94066858 original size:19 final size:21
Alignment explanation
Indices: 94066815--94066868 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 21
94066805 TTTTTTTTTC
* *
94066815 TTCTTCTTCTCTTCTTCTTTT
1 TTCTTCTCCTCTTCTTCTCTT
94066836 TTCTTCTCCT-TTC-TCTCTT
1 TTCTTCTCCTCTTCTTCTCTT
94066855 TTCTT-TCTCTCTTC
1 TTCTTCTC-CTCTTC
94066869 CGGTGTGTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 2 0.07
19 12 0.41
20 6 0.21
21 9 0.31
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (21 bp):
TTCTTCTCCTCTTCTTCTCTT
Found at i:94066861 original size:13 final size:14
Alignment explanation
Indices: 94066812--94066868 Score: 66
Period size: 13 Copynumber: 4.2 Consensus size: 14
94066802 ACCTTTTTTT
94066812 TTCTTC-TTCTTCTC
1 TTCTTCTTTC-TCTC
*
94066826 TTCTTCTTT-TTTC
1 TTCTTCTTTCTCTC
*
94066839 TTCTCCTTTCTCTC
1 TTCTTCTTTCTCTC
94066853 TT-TTCTTTCTCTC
1 TTCTTCTTTCTCTC
94066866 TTC
1 TTC
94066869 CGGTGTGTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
13 23 0.64
14 11 0.31
15 2 0.06
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (14 bp):
TTCTTCTTTCTCTC
Found at i:94073854 original size:3 final size:3
Alignment explanation
Indices: 94073840--94073899 Score: 56
Period size: 3 Copynumber: 21.0 Consensus size: 3
94073830 AAATAGATAT
* *
94073840 TTA TTA TAA TTA TTA TTA -TA GTT- TTA -TA TTA -AA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
*
94073882 TTA TTA CTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
94073900 AAATAATTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
2 7 0.15
3 38 0.83
4 1 0.02
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:94074033 original size:3 final size:3
Alignment explanation
Indices: 94074025--94074076 Score: 63
Period size: 3 Copynumber: 17.7 Consensus size: 3
94074015 ATGAATTAAA
* *
94074025 TAT TAT TA- TAT TA- TAT TAT TAT TAT AAT GTAT TAT TAT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
94074069 TAT TAT TA
1 TAT TAT TA
94074077 ACTAACATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 36 0.86
4 2 0.05
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:94074046 original size:16 final size:16
Alignment explanation
Indices: 94074025--94074076 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
94074015 ATGAATTAAA
94074025 TATTATTATATTATAT
1 TATTATTATATTATAT
* *
94074041 TATTATTATAATGTAT
1 TATTATTATATTATAT
*
94074057 TATTATTAT-TAATAT
1 TATTATTATATTATAT
94074072 TATTA
1 TATTA
94074077 ACTAACATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
TATTATTATATTATAT
Found at i:94074127 original size:17 final size:17
Alignment explanation
Indices: 94074107--94074141 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
94074097 GAAATAAAGT
*
94074107 AAAATAAGAAAAGAAAC
1 AAAAGAAGAAAAGAAAC
*
94074124 AAAAGGAGAAAAGAAAC
1 AAAAGAAGAAAAGAAAC
94074141 A
1 A
94074142 GAAGCTTTCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.17, T:0.03
Consensus pattern (17 bp):
AAAAGAAGAAAAGAAAC
Found at i:94074532 original size:17 final size:17
Alignment explanation
Indices: 94074497--94074537 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
94074487 AATTAAGTGA
94074497 AATATGAAAAGAAATTG
1 AATATGAAAAGAAATTG
*
94074514 AATA-GAAATGAAATATG
1 AATATGAAAAGAAAT-TG
94074531 AAT-TGAA
1 AATATGAA
94074538 TTATAAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.59, C:0.00, G:0.17, T:0.24
Consensus pattern (17 bp):
AATATGAAAAGAAATTG
Found at i:94075806 original size:128 final size:129
Alignment explanation
Indices: 94075624--94075872 Score: 385
Period size: 128 Copynumber: 1.9 Consensus size: 129
94075614 CCTCGCTTTA
* * *
94075624 AAAAACACGAGTGAAATTCCATAGGAATATTCGATTATTTTGAACAAACGGGAAATCGAAACCTA
1 AAAAACACGAGTAAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATCGAAACCCA
*
94075689 GCACGATAGGACACTATTCCCCGAATTTCCCAACATC-AGATATTGCC-TTGTTTTAGTGTTTGG
66 GCACGATAGGACACTATTCCCCGAATTTCCAAACATCGA-ATATTGCCTTTGTTTTAGTGTTTGG
* * *
94075752 AAAAACACGAGTAAAATTCTAAAGGAATATTTGATTATTTTGAACAAACGGGAAATTGAAACCCA
1 AAAAACACGAGTAAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATCGAAACCCA
** *
94075817 GCACGATAGGGTACTATTTCCCGAATTTCCAAACATCGAATATTGCCTTTGTTTTA
66 GCACGATAGGACACTATTCCCCGAATTTCCAAACATCGAATATTGCCTTTGTTTTA
94075873 ATGAATCTTC
Statistics
Matches: 109, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
128 100 0.92
129 9 0.08
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (129 bp):
AAAAACACGAGTAAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATCGAAACCCA
GCACGATAGGACACTATTCCCCGAATTTCCAAACATCGAATATTGCCTTTGTTTTAGTGTTTGG
Found at i:94077964 original size:22 final size:22
Alignment explanation
Indices: 94077897--94077969 Score: 75
Period size: 20 Copynumber: 3.5 Consensus size: 22
94077887 TCTTTCGTAG
94077897 GTACGGAGTGCGT-GGCGT-G-T
1 GTACGGAG-GCGTGGGCGTGGCT
* *
94077917 GTACGGGGGCCGTGTGC-TGGC-
1 GTACGGAGG-CGTGGGCGTGGCT
94077938 GTACGGAGGCGTGGGCGTGGCT
1 GTACGGAGGCGTGGGCGTGGCT
94077960 GTACGGAGGC
1 GTACGGAGGC
94077970 TGTACGGAGG
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
19 1 0.02
20 17 0.40
21 15 0.35
22 10 0.23
ACGTcount: A:0.10, C:0.19, G:0.52, T:0.19
Consensus pattern (22 bp):
GTACGGAGGCGTGGGCGTGGCT
Found at i:94077972 original size:11 final size:11
Alignment explanation
Indices: 94077956--94077991 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
94077946 GCGTGGGCGT
94077956 GGCTGTACGGA
1 GGCTGTACGGA
94077967 GGCTGTACGGA
1 GGCTGTACGGA
94077978 GGC-GT--GGA
1 GGCTGTACGGA
94077986 GGCTGT
1 GGCTGT
94077992 TGAGGTTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 6 0.25
9 2 0.08
10 2 0.08
11 14 0.58
ACGTcount: A:0.14, C:0.17, G:0.50, T:0.19
Consensus pattern (11 bp):
GGCTGTACGGA
Found at i:94079315 original size:20 final size:20
Alignment explanation
Indices: 94079276--94079326 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
94079266 CGTGTTTGCT
* *
94079276 TTCCGTTTAGCTCTTATGAGC
1 TTCCG-TTAACTCATATGAGC
*
94079297 TTCCGTTAACTCATATGAGT
1 TTCCGTTAACTCATATGAGC
*
94079317 TTCAGTTAAC
1 TTCCGTTAAC
94079327 CCTTTTAGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (20 bp):
TTCCGTTAACTCATATGAGC
Found at i:94079408 original size:39 final size:40
Alignment explanation
Indices: 94079359--94079496 Score: 201
Period size: 39 Copynumber: 3.5 Consensus size: 40
94079349 TTTGATGAGC
* *
94079359 TTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTTTGTGCG
1 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCG
* *
94079399 TT-AGTTAGCCTTCGGGCTTCCGTTTAACACTTCTGTGC-
1 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCG
94079437 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTG-G
1 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCG
* *
94079476 TTCAGCTAGACTTCGGGCTTC
1 TTCAGTTAGCCTTCGGGCTTC
94079497 AGATGACGAT
Statistics
Matches: 89, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.02
39 85 0.96
40 2 0.02
ACGTcount: A:0.13, C:0.25, G:0.23, T:0.38
Consensus pattern (40 bp):
TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCG
Found at i:94087670 original size:16 final size:16
Alignment explanation
Indices: 94087649--94087682 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
94087639 TTTAATTTGA
94087649 TTAGTTACCTAATTAT
1 TTAGTTACCTAATTAT
94087665 TTAGTTACCTAATTAT
1 TTAGTTACCTAATTAT
94087681 TT
1 TT
94087683 TCATTCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (16 bp):
TTAGTTACCTAATTAT
Found at i:94096572 original size:44 final size:46
Alignment explanation
Indices: 94096519--94096611 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 46
94096509 TTATTATTGA
* *
94096519 TTTTAAAAAACTTGAAATGTATA-TTTGAAA-TATTTTTTAATATT
1 TTTTAAAAAACTTGAAATATATATTTTGAAATTATTTTTTAAAATT
* *
94096563 TTTTAAAAAATTTTAAATATATATTTTTGAAATTATTTTTTAAAATT
1 TTTTAAAAAACTTGAAATATATA-TTTTGAAATTATTTTTTAAAATT
94096610 TT
1 TT
94096612 AAATATATAC
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
44 20 0.48
46 7 0.17
47 15 0.36
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (46 bp):
TTTTAAAAAACTTGAAATATATATTTTGAAATTATTTTTTAAAATT
Found at i:94096588 original size:35 final size:33
Alignment explanation
Indices: 94096548--94096629 Score: 103
Period size: 35 Copynumber: 2.4 Consensus size: 33
94096538 TATATTTGAA
94096548 ATATTTTTTAATATTTTTTAAAAAATTTTAAATAT
1 ATATTTTTTAATATTTTTT--AAAATTTTAAATAT
*
94096583 ATATTTTTGAAATTATTTTTTAAAATTTTAAATAT
1 ATATTTTT-TAA-TATTTTTTAAAATTTTAAATAT
*
94096618 ATA-CTTTTAATA
1 ATATTTTTTAATA
94096630 ATATAAAACA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
32 2 0.05
33 2 0.05
34 3 0.07
35 25 0.60
36 2 0.05
37 8 0.19
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (33 bp):
ATATTTTTTAATATTTTTTAAAATTTTAAATAT
Found at i:94096694 original size:21 final size:20
Alignment explanation
Indices: 94096670--94096757 Score: 67
Period size: 21 Copynumber: 4.3 Consensus size: 20
94096660 GACCTTTCAA
94096670 ATTTATTATTAGTTTTATAAT
1 ATTT-TTATTAGTTTTATAAT
* *
94096691 ATTTTAAATGTATCTTTTA-AAT
1 ATTTT-TAT-TA-GTTTTATAAT
*
94096713 ATTTTTAATTTGTTTTATAAT
1 ATTTTT-ATTAGTTTTATAAT
*
94096734 ATTTTTAATA-TTTT-TAAT
1 ATTTTTATTAGTTTTATAAT
94096752 -TTTTTA
1 ATTTTTA
94096758 AAAATATATT
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
17 6 0.11
18 4 0.07
19 4 0.07
20 8 0.15
21 16 0.29
22 12 0.22
23 5 0.09
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (20 bp):
ATTTTTATTAGTTTTATAAT
Found at i:94096713 original size:22 final size:21
Alignment explanation
Indices: 94096682--94096738 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
94096672 TTATTATTAG
94096682 TTTTATAATATTTTAAATGTATC
1 TTTTATAATATTTTAAAT-T-TC
* *
94096705 TTTTA-AATATTTTTAATTTG
1 TTTTATAATATTTTAAATTTC
94096725 TTTTATAATATTTT
1 TTTTATAATATTTT
94096739 TAATATTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 6 0.19
21 9 0.29
22 11 0.35
23 5 0.16
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.63
Consensus pattern (21 bp):
TTTTATAATATTTTAAATTTC
Found at i:94096744 original size:9 final size:9
Alignment explanation
Indices: 94096682--94096758 Score: 57
Period size: 9 Copynumber: 7.8 Consensus size: 9
94096672 TTATTATTAG
94096682 TTTTATAATA
1 TTTT-TAATA
*
94096692 TTTTAAATGTA
1 TTTTTAA--TA
94096703 TCTTTTAAATA
1 T-TTTT-AATA
*
94096714 TTTTTAATTTG
1 TTTTTAA--TA
94096725 TTTTATAATA
1 TTTT-TAATA
94096735 TTTTTAATA
1 TTTTTAATA
94096744 TTTTTAAT-
1 TTTTTAATA
94096752 TTTTTAA
1 TTTTTAA
94096759 AAATATATTA
Statistics
Matches: 56, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
8 7 0.12
9 17 0.30
10 13 0.23
11 11 0.20
12 6 0.11
13 2 0.04
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (9 bp):
TTTTTAATA
Found at i:94096767 original size:31 final size:31
Alignment explanation
Indices: 94096682--94096767 Score: 86
Period size: 30 Copynumber: 2.8 Consensus size: 31
94096672 TTATTATTAG
* * *
94096682 TTTTATAATATTTTAAATGTATCTTTTAAATA
1 TTTT-TAATTTTTTAAATATATATTTTAAATA
* *
94096714 TTTTTAATTTGTTT-TATA-ATATTTTTAATA
1 TTTTTAATTT-TTTAAATATATATTTTAAATA
*
94096744 TTTTTAATTTTTTAAAAATATATT
1 TTTTTAATTTTTTAAATATATATT
94096768 ATTTTTAAAG
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
29 3 0.07
30 22 0.50
31 12 0.27
32 7 0.16
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.62
Consensus pattern (31 bp):
TTTTTAATTTTTTAAATATATATTTTAAATA
Found at i:94096869 original size:122 final size:123
Alignment explanation
Indices: 94096599--94096871 Score: 335
Period size: 122 Copynumber: 2.2 Consensus size: 123
94096589 TTGAAATTAT
* * *
94096599 TTTTTAAAATTTTAAATATATACTTTTAATAATATAAAACATTTAAATATTTTAAAGATATGACC
1 TTTTTAAAATTTTAAATATA-ATTTTTAATAATATAAAACATATAAATATTTTAAAGATATGACA
**
94096664 TTTCAAATTTATTATTAGTTTTATAATATTTTAAATGTATCTTTTAAATATTTTTAATT
65 TTTCAAATTTATTATTAGTTTTATAATATTTTAAATGTATCTTTTAAATATTTTTAAAA
* ** * *
94096723 TGTTTTATAATATTTT-TA-AT-ATTTTTAATTTTTTAAAA-ATAT-ATTATTTTTAAAGATATG
1 T-TTTTA-AA-ATTTTAAATATAATTTTTAATAATATAAAACATATAAATA-TTTTAAAGATATG
*
94096783 ACATTTCAAATTTATTATTTGTTTTATAATATTTTAAATGCATAT-TTTTAAA-ATTTTTAAAA
62 ACATTTCAAATTTATTATTAGTTTTATAATATTTTAAATG--TATCTTTTAAATATTTTTAAAA
94096845 TTTTTAAAATTTTAAATATAATTTTTA
1 TTTTTAAAATTTTAAATATAATTTTTA
94096872 TAAATGATTA
Statistics
Matches: 128, Mismatches: 12, Indels: 20
0.80 0.08 0.12
Matches are distributed among these distances:
119 5 0.04
120 3 0.02
121 10 0.08
122 70 0.55
123 21 0.16
124 4 0.03
125 7 0.05
126 3 0.02
127 5 0.04
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.54
Consensus pattern (123 bp):
TTTTTAAAATTTTAAATATAATTTTTAATAATATAAAACATATAAATATTTTAAAGATATGACAT
TTCAAATTTATTATTAGTTTTATAATATTTTAAATGTATCTTTTAAATATTTTTAAAA
Found at i:94096870 original size:30 final size:29
Alignment explanation
Indices: 94096834--94096898 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
94096824 ATATTTTTAA
**
94096834 AATTTTTA-AAATTTTTAAAATTTTAAATAT
1 AATTTTTATAAATGATT-AAATTTTAAAT-T
*
94096864 AATTTTTATAAATGATTAATTTTTAAATT
1 AATTTTTATAAATGATTAAATTTTAAATT
94096893 AATTTT
1 AATTTT
94096899 AAAGATATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 7 0.23
30 18 0.58
31 6 0.19
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (29 bp):
AATTTTTATAAATGATTAAATTTTAAATT
Done.