Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 289 of 325
Found at i:94443750 original size:22 final size:22
Alignment explanation
Indices: 94443680--94443809 Score: 94
Period size: 22 Copynumber: 6.0 Consensus size: 22
94443670 TTTTCAAGTA
94443680 TATT-TATATATTATATTAT-T
1 TATTATATATATTATATTATAT
*
94443700 TATTAATATATATTATTTTATAT
1 TATT-ATATATATTATATTATAT
*
94443723 TTTTATAT-TATTATA-TATAT
1 TATTATATATATTATATTATAT
* * * *
94443743 TA-TAT-TATCTTATGTTTTAA
1 TATTATATATATTATATTATAT
*
94443763 TATACATTATATATTATATTATAT
1 TAT-TA-TATATATTATATTATAT
* *
94443787 TATTTTATATTTTATCA-TATAT
1 TATTATATATATTAT-ATTATAT
94443809 T
1 T
94443810 TATATCTTAT
Statistics
Matches: 84, Mismatches: 16, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
18 1 0.01
19 8 0.10
20 15 0.18
21 6 0.07
22 34 0.40
23 6 0.07
24 14 0.17
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (22 bp):
TATTATATATATTATATTATAT
Found at i:94443974 original size:27 final size:27
Alignment explanation
Indices: 94443923--94443974 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
94443913 TATCATTACA
* *
94443923 TTATTTTATTCTTTTATATTTTATTTG
1 TTATTTTATTCATATATATTTTATTTG
94443950 TTATTTTATT-ATATATATTTATATT
1 TTATTTTATTCATATATATTT-TATT
94443975 ATTAATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (27 bp):
TTATTTTATTCATATATATTTTATTTG
Found at i:94443976 original size:18 final size:17
Alignment explanation
Indices: 94443950--94443985 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
94443940 ATTTTATTTG
*
94443950 TTATTTTATTATATATAT
1 TTATATTATTA-ATATAT
94443968 TTATATTATTAATATAT
1 TTATATTATTAATATAT
94443985 T
1 T
94443986 ATTACACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATATTATTAATATAT
Found at i:94456143 original size:44 final size:44
Alignment explanation
Indices: 94456095--94456567 Score: 700
Period size: 44 Copynumber: 10.8 Consensus size: 44
94456085 TGTTTACAAT
94456095 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* * *
94456139 GAGCAGATCGAAGATAGTAGATTTGGCATCTCTGCATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* * *
94456183 GAGTAGATCGAAGAT-GATAGATTTGGCATCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAG-CAGATTTGGCGTCTCTGTATTGTCAGA
* *
94456227 GAGCAGATCAAAGATAGTAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
94456271 GAGCAGATCGAAGAT-GACAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAG-CAGATTTGGCGTCTCTGTATTGTCAGA
*
94456315 GAGCAGATCGAAGATAGCAGATTTGGCGTTTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
*
94456359 GAGCAAATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* *** *
94456403 GAGCAGATTGAAGATAATGGATTTGGCATCTCTGTATTGAT-AGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG-TCAGA
* *
94456447 GAGTAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* * *
94456491 GAGCAGATCGAAGATAGTAGATTTGGCATCTCTGTATTGTCAAA
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
* *
94456535 AAGCAGATCGAAGATAGCATATTTGGCGTCTCT
1 GAGCAGATCGAAGATAGCAGATTTGGCGTCTCT
94456568 CAAGGACATC
Statistics
Matches: 390, Mismatches: 33, Indels: 12
0.90 0.08 0.03
Matches are distributed among these distances:
43 3 0.01
44 384 0.98
45 3 0.01
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (44 bp):
GAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGA
Found at i:94457888 original size:47 final size:47
Alignment explanation
Indices: 94457825--94458092 Score: 509
Period size: 47 Copynumber: 5.7 Consensus size: 47
94457815 ATGATAGTAT
94457825 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
94457872 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
94457919 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
94457966 GGCCTAATGGCGGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
94458013 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
94458060 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
94458093 CCCGAAGCGC
Statistics
Matches: 216, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
47 212 0.98
48 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:94458279 original size:37 final size:37
Alignment explanation
Indices: 94458210--94458288 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
94458200 CCGAGCTCTA
* * *
94458210 AAGACCCGATGACTACGTATGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
* *
94458247 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
94458284 AAGAC
1 AAGAC
94458289 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
Found at i:94469799 original size:30 final size:29
Alignment explanation
Indices: 94469749--94469809 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 29
94469739 TTTGCAATTT
*
94469749 CATTTTATTTTAATATAATTTGGCCCTAA
1 CATTTTATTTTAATATAATTTAGCCCTAA
* *
94469778 CATTTTGATTTT-ATTTCAATTTAGTCCTAA
1 CATTTT-ATTTTAATAT-AATTTAGCCCTAA
94469808 CA
1 CA
94469810 GCTCCTTTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.49
Consensus pattern (29 bp):
CATTTTATTTTAATATAATTTAGCCCTAA
Found at i:94470082 original size:5 final size:5
Alignment explanation
Indices: 94470064--94470200 Score: 80
Period size: 5 Copynumber: 29.0 Consensus size: 5
94470054 TATTTTCAAG
* *
94470064 TATAT T-TA- TATAT TATAT TAT-T TAT-T AATA- TATAT TATTT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
* * * * *
94470109 T-T-T TATAT TATTAT ATATAT TATAT TATCT TATGT TTTAA TATA- CAT-T
1 TATAT TATAT TA-TAT -TATAT TATAT TATAT TATAT TATAT TATAT TATAT
* * *
94470157 ATATAT TATAT TATAT TATTT TATAT TTTAT CATA- TAT-T TATAT
1 -TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
94470201 CTTATTACAT
Statistics
Matches: 101, Mismatches: 18, Indels: 26
0.70 0.12 0.18
Matches are distributed among these distances:
3 3 0.03
4 23 0.23
5 66 0.65
6 7 0.07
7 2 0.02
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:94470087 original size:52 final size:51
Alignment explanation
Indices: 94470029--94470141 Score: 124
Period size: 52 Copynumber: 2.2 Consensus size: 51
94470019 ATATAAAAAT
* *
94470029 TTATTTATT-TGTATATTATTTTTGTTATTTTCAAGTA-TATT-TATATATTATA
1 TTATTTATTATATATATTA-TTTT-ATATTTT-AA-TATTATTATATATATTATA
*
94470081 TTATTTATTAATATATATTATTTTATATTTTTATATTATTATATATATTATA
1 TTATTTATT-ATATATATTATTTTATATTTTAATATTATTATATATATTATA
94470133 TTATCTTAT
1 TTAT-TTAT
94470142 GTTTTAATAT
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
50 2 0.04
51 5 0.09
52 30 0.57
53 8 0.15
54 8 0.15
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.64
Consensus pattern (51 bp):
TTATTTATTATATATATTATTTTATATTTTAATATTATTATATATATTATA
Found at i:94470089 original size:32 final size:31
Alignment explanation
Indices: 94470034--94470200 Score: 105
Period size: 32 Copynumber: 5.7 Consensus size: 31
94470024 AAAATTTATT
* * *
94470034 TATTTGTATATTAT-TTTTGTTATTTTCAAGTA
1 TATTTATATATTATATTATATTATTTT-AA-TA
94470066 TATTTATATATTATATTAT-TTA--TTAATA
1 TATTTATATATTATATTATATTATTTTAATA
*
94470094 TATATTAT-T-TTATATT-T-TTATATT-AT-
1 TAT-TTATATATTATATTATATTATTTTAATA
*
94470120 TA--TATATATTATATTATCTTATGTTTTAATA
1 TATTTATATATTATATTATATTA--TTTTAATA
*
94470151 TACATTATATATTATATTATATTATTTT-ATA
1 TA-TTTATATATTATATTATATTATTTTAATA
94470182 T-TTTATCATA-TAT-TTATAT
1 TATTTAT-ATATTATATTATAT
94470201 CTTATTACAT
Statistics
Matches: 114, Mismatches: 5, Indels: 36
0.74 0.03 0.23
Matches are distributed among these distances:
23 3 0.03
24 1 0.01
25 7 0.06
26 7 0.06
27 12 0.11
28 14 0.12
29 16 0.14
30 7 0.06
31 6 0.05
32 20 0.18
33 3 0.03
34 18 0.16
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (31 bp):
TATTTATATATTATATTATATTATTTTAATA
Found at i:94470107 original size:10 final size:10
Alignment explanation
Indices: 94470028--94470183 Score: 81
Period size: 10 Copynumber: 14.8 Consensus size: 10
94470018 CATATAAAAA
94470028 TTTAT-TTAT
1 TTTATATTAT
94470037 TTGTATATTAT
1 TT-TATATTAT
*
94470048 TTT-TGTTAT
1 TTTATATTAT
94470057 TTTCA-AGTATAT
1 TTT-ATA-T-TAT
94470069 TTATATATTAT
1 TT-TATATTAT
*
94470080 ATTAT-TTAT
1 TTTATATTAT
94470089 TAATATATATTAT
1 T--T-TATATTAT
94470102 TTTATA-T-T
1 TTTATATTAT
94470110 TTTATATTAT
1 TTTATATTAT
94470120 TATATATATTAT
1 T-T-TATATTAT
* *
94470132 ATTATCTTATGT
1 TTTATATTA--T
*
94470144 TTTAATATACAT
1 TTT-ATAT-TAT
*
94470156 TATATATTAT
1 TTTATATTAT
*
94470166 ATTATATTAT
1 TTTATATTAT
94470176 TTTATATT
1 TTTATATT
94470184 TTATCATATA
Statistics
Matches: 113, Mismatches: 14, Indels: 39
0.68 0.08 0.23
Matches are distributed among these distances:
8 7 0.06
9 16 0.14
10 36 0.32
11 19 0.17
12 24 0.21
13 10 0.09
14 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.63
Consensus pattern (10 bp):
TTTATATTAT
Found at i:94470136 original size:22 final size:22
Alignment explanation
Indices: 94470066--94470195 Score: 94
Period size: 22 Copynumber: 6.0 Consensus size: 22
94470056 TTTTCAAGTA
94470066 TATT-TATATATTATATTAT-T
1 TATTATATATATTATATTATAT
*
94470086 TATTAATATATATTATTTTATAT
1 TATT-ATATATATTATATTATAT
*
94470109 TTTTATAT-TATTATA-TATAT
1 TATTATATATATTATATTATAT
* * * *
94470129 TA-TAT-TATCTTATGTTTTAA
1 TATTATATATATTATATTATAT
*
94470149 TATACATTATATATTATATTATAT
1 TAT-TA-TATATATTATATTATAT
* *
94470173 TATTTTATATTTTATCA-TATAT
1 TATTATATATATTAT-ATTATAT
94470195 T
1 T
94470196 TATATCTTAT
Statistics
Matches: 84, Mismatches: 16, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
18 1 0.01
19 8 0.10
20 15 0.18
21 6 0.07
22 34 0.40
23 6 0.07
24 14 0.17
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (22 bp):
TATTATATATATTATATTATAT
Found at i:94470359 original size:27 final size:27
Alignment explanation
Indices: 94470308--94470359 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
94470298 TATCATTACA
* *
94470308 TTATTTTATTCTTTTATATTTTATTTG
1 TTATTTTATTCATATATATTTTATTTG
94470335 TTATTTTATT-ATATATATTTATATT
1 TTATTTTATTCATATATATTT-TATT
94470360 ATTAATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (27 bp):
TTATTTTATTCATATATATTTTATTTG
Found at i:94470361 original size:18 final size:17
Alignment explanation
Indices: 94470335--94470370 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
94470325 ATTTTATTTG
*
94470335 TTATTTTATTATATATAT
1 TTATATTATTA-ATATAT
94470353 TTATATTATTAATATAT
1 TTATATTATTAATATAT
94470370 T
1 T
94470371 ATTACACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATATTATTAATATAT
Found at i:94480032 original size:27 final size:27
Alignment explanation
Indices: 94480002--94480575 Score: 609
Period size: 27 Copynumber: 20.9 Consensus size: 27
94479992 AAAGTACTCC
*
94480002 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
94480029 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
94480056 CGATTTTTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
94480083 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
94480110 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
94480137 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
94480164 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
94480191 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
94480218 CGATTTGTAAATTTTTAAAATTACCGTTTTTCCCT
1 CGA-TT-T--A----CAGAATTACCGTTTTACCCT
*
94480253 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
94480280 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
94480307 CGATTTATAGAATTACCGTTTTACCGT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** *
94480334 TGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
94480361 TGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
94480388 CGATTTACAGAATTACCGTTTTACCCA
1 CGATTTACAGAATTACCGTTTTACCCT
*
94480415 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
94480442 CGATTTACAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
94480469 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
94480496 TGATTTTATAGAATTACTGGTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* **
94480524 C-AGTTTACAAAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
94480551 TGATTTACAGAATTACCGTTTTACC
1 CGATTTACAGAATTACCGTTTTACC
94480576 ATTGATTGTG
Statistics
Matches: 464, Mismatches: 65, Indels: 36
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.01
27 406 0.88
28 27 0.06
29 1 0.00
31 2 0.00
33 1 0.00
34 2 0.00
35 21 0.05
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:94480763 original size:81 final size:81
Alignment explanation
Indices: 94480586--94480763 Score: 207
Period size: 81 Copynumber: 2.2 Consensus size: 81
94480576 ATTGATTGTG
* * * *
94480586 AAATTACTGAAATACCCCTGTTGGGTAGAATTTCCGAAATACCCATATAGGGTAGAATCATTGAA
1 AAATTACCGAAATACCCCTATAGGGTAGAATTTCCGAAATACCCATATAGGGTAGAATCACTGAA
* *
94480651 ATACCCTTATAGGATA
66 AAACCCCTATAGGATA
* * *
94480667 AAATTACCAAAATACCCCTATAGGGTAGAATTAT-CGAAATACCCTTGTAGGGTAGAAAT-ACTG
1 AAATTACCGAAATACCCCTATAGGGTAGAATT-TCCGAAATACCCATATAGGGTAG-AATCACTG
* *
94480730 AAAAACCCCTGTAGGGTA
64 AAAAACCCCTATAGGATA
* *
94480748 GAATTACCGAGATACC
1 AAATTACCGAAATACC
94480764 TTTGTGGGGT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
81 77 0.95
82 4 0.05
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (81 bp):
AAATTACCGAAATACCCCTATAGGGTAGAATTTCCGAAATACCCATATAGGGTAGAATCACTGAA
AAACCCCTATAGGATA
Found at i:94480773 original size:27 final size:27
Alignment explanation
Indices: 94480587--94480782 Score: 176
Period size: 27 Copynumber: 7.3 Consensus size: 27
94480577 TTGATTGTGA
* * *
94480587 AATTACTGAAATACCCCTGTTGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
94480614 AATTTCCGAAATACCCATATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* ** * * *
94480641 AATCATTGAAATACCCTTATAGGATAA
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
94480668 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
94480695 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
94480722 AAATACTGAAAAACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
94480749 AATTACCGAGATACCTTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
94480776 AATTACC
1 AATTACC
94480783 ATTTTGCCCC
Statistics
Matches: 133, Mismatches: 36, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 133 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:94481019 original size:27 final size:26
Alignment explanation
Indices: 94480981--94481063 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
94480971 CGGAGGAAGC
*
94480981 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
94481008 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
94481034 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
94481061 GTT
1 GTT
94481064 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:94481396 original size:27 final size:27
Alignment explanation
Indices: 94481374--94481447 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
94481364 TAGGTGGGTT
*
94481374 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAGTATCTGTA-TCTGGTGGCTC
*
94481401 TGCCACAGTATCTGTATCTGGTGACTC
1 TGCCACAGTATCTGTATCTGGTGGCTC
*
94481428 TGTCAC-GATATCTGT-TCTGG
1 TGCCACAG-TATCTGTATCTGG
94481448 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.14
27 35 0.83
28 1 0.02
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TGCCACAGTATCTGTATCTGGTGGCTC
Found at i:94481574 original size:6 final size:6
Alignment explanation
Indices: 94481565--94481709 Score: 154
Period size: 6 Copynumber: 23.8 Consensus size: 6
94481555 TTGCATTCAC
* *
94481565 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
94481614 ATTCTG -TTACTG ATTCTG ATTTTG ATTCTA ATTCTG -TCACCTA ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
94481663 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
94481710 CATTTTGGTT
Statistics
Matches: 117, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
5 6 0.05
6 101 0.86
7 8 0.07
8 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:94481677 original size:67 final size:67
Alignment explanation
Indices: 94481565--94481709 Score: 263
Period size: 67 Copynumber: 2.2 Consensus size: 67
94481555 TTGCATTCAC
* *
94481565 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGATTCTGTTACTGATTC
1 ATTCTGATTCTAATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGATTCTGTTACTGATTC
94481630 TG
66 TG
*
94481632 ATTTTGATTCTAATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGATTCTGTTACTGATTC
1 ATTCTGATTCTAATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGATTCTGTTACTGATTC
94481697 TG
66 TG
94481699 ATTCTGATTCT
1 ATTCTGATTCT
94481710 CATTTTGGTT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 74 1.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (67 bp):
ATTCTGATTCTAATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGATTCTGTTACTGATTC
TG
Found at i:94499089 original size:39 final size:39
Alignment explanation
Indices: 94499046--94499188 Score: 196
Period size: 39 Copynumber: 3.7 Consensus size: 39
94499036 CATATTCACT
* *
94499046 TTTAAGCATATATCACATTACACATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
94499085 TTTAAGCATATATCACAATACTTATATAGTCACATGACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* *
94499124 TCTAAGCATATATCACAATACTCATATAATCACATTACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
94499163 TTCAAGCATATATCATAATACGCATA
1 TTTAAGCATATATCACAATACTCATA
94499189 ACATGTTTAT
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 91 1.00
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.31
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAACA
Found at i:94509702 original size:23 final size:24
Alignment explanation
Indices: 94509669--94509721 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
94509659 CTAGTTTTAG
*
94509669 ATATGTGATGACGTTATCTT-ATAA
1 ATATGTGATGAAGTTATCTTGA-AA
*
94509693 ATATG-GATGAATTTATCTTGAAA
1 ATATGTGATGAAGTTATCTTGAAA
94509716 ATATGT
1 ATATGT
94509722 TGAATTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.36, C:0.06, G:0.17, T:0.42
Consensus pattern (24 bp):
ATATGTGATGAAGTTATCTTGAAA
Found at i:94510214 original size:23 final size:23
Alignment explanation
Indices: 94510187--94510233 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
94510177 ATTACCGATA
94510187 AATACACATCATTTAT-CATATAT
1 AATACACA-CATTTATACATATAT
* *
94510210 AATACATACATTTATACATTTAT
1 AATACACACATTTATACATATAT
94510233 A
1 A
94510234 CTCAAATACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (23 bp):
AATACACACATTTATACATATAT
Found at i:94511758 original size:48 final size:47
Alignment explanation
Indices: 94511639--94511767 Score: 161
Period size: 47 Copynumber: 2.7 Consensus size: 47
94511629 AATCAATAAG
* * *
94511639 TACCTATACCATGGCCCGTAGCCAAACCAAGGTAACTTATCTCGGAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCTCGAAA
* *
94511686 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAA-TTCCTCCTTGAAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTT-AT-CTCGAAA
* * *
94511734 TACCTATACCTTGGCCCGTTGCCAAATCATGGTA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA
94511768 TCGATCGCAC
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
46 2 0.03
47 35 0.49
48 35 0.49
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCTCGAAA
Found at i:94517467 original size:43 final size:43
Alignment explanation
Indices: 94517419--94517526 Score: 155
Period size: 43 Copynumber: 2.5 Consensus size: 43
94517409 TATCACAGAT
*
94517419 ATGGTCTTACATGTTATCACAT-ATCGATGCCAATGTCCCAAAC
1 ATGGTCTTACATGTAATCACATAAT-GATGCCAATGTCCCAAAC
* * * *
94517462 ATGGTCTTACACGAAATCATATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACATAATGATGCCAATGTCCCAAAC
94517505 ATGGTCTTACATGTAATCACAT
1 ATGGTCTTACATGTAATCACAT
94517527 CTCGGTAATC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 54 0.96
44 2 0.04
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATAATGATGCCAATGTCCCAAAC
Found at i:94536818 original size:31 final size:31
Alignment explanation
Indices: 94536783--94536844 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
94536773 TTAGTATAAA
94536783 GAGAAAGAAAGATGAAGAAAATTCTTCATAC
1 GAGAAAGAAAGATGAAGAAAATTCTTCATAC
94536814 GAGAAAGAAAGATGAAGAAAATTCTTCATAC
1 GAGAAAGAAAGATGAAGAAAATTCTTCATAC
94536845 TTTTACCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.52, C:0.10, G:0.19, T:0.19
Consensus pattern (31 bp):
GAGAAAGAAAGATGAAGAAAATTCTTCATAC
Found at i:94540104 original size:3 final size:3
Alignment explanation
Indices: 94540096--94540131 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
94540086 TCATTTAATT
*
94540096 TTA TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
94540132 AAAACTAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:94540939 original size:24 final size:24
Alignment explanation
Indices: 94540912--94540959 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
94540902 TTCAAAAGAT
94540912 ATGGTTCAATAAATTGTCAATCTC
1 ATGGTTCAATAAATTGTCAATCTC
94540936 ATGGTTCAATAAATTGTCAATCTC
1 ATGGTTCAATAAATTGTCAATCTC
94540960 CTAAATATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (24 bp):
ATGGTTCAATAAATTGTCAATCTC
Found at i:94544067 original size:42 final size:42
Alignment explanation
Indices: 94544020--94544103 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
94544010 CAGTGGGACA
**
94544020 AAATCTTGGTTAAAAGAAAAGAGTAAAACACATTTTAAACTC
1 AAATCTTCATTAAAAGAAAAGAGTAAAACACATTTTAAACTC
*
94544062 AAATCTTCATTAAAAGAAAAGAGTAAAACATATTTTAAACTC
1 AAATCTTCATTAAAAGAAAAGAGTAAAACACATTTTAAACTC
94544104 TCCCTAATGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.51, C:0.12, G:0.10, T:0.27
Consensus pattern (42 bp):
AAATCTTCATTAAAAGAAAAGAGTAAAACACATTTTAAACTC
Found at i:94547402 original size:23 final size:23
Alignment explanation
Indices: 94547372--94547419 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
94547362 CCCCATCGGC
94547372 CAAATCTAGTGCTAACTGCGGTA
1 CAAATCTAGTGCTAACTGCGGTA
94547395 CAAATCTAGTGCTAACTGCGGTA
1 CAAATCTAGTGCTAACTGCGGTA
94547418 CA
1 CA
94547420 GACTCTGGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (23 bp):
CAAATCTAGTGCTAACTGCGGTA
Found at i:94555261 original size:23 final size:23
Alignment explanation
Indices: 94555246--94555296 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
94555236 AAAGATGAAG
94555246 TAAAAA-TAATCTTAAAAATAAAA
1 TAAAAAGTAAT-TTAAAAATAAAA
*
94555269 TAAAAAGTAATTTAAAAAGTTAAA
1 TAAAAAGTAATTTAAAAA-TAAAA
94555293 TAAA
1 TAAA
94555297 GATAAAAGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 13 0.52
24 12 0.48
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (23 bp):
TAAAAAGTAATTTAAAAATAAAA
Found at i:94555274 original size:24 final size:24
Alignment explanation
Indices: 94555247--94555296 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
94555237 AAGATGAAGT
94555247 AAAAATAATCTTAAAAA-TAAAATA
1 AAAAATAAT-TTAAAAAGTAAAATA
* *
94555271 AAAAGTAATTTAAAAAGTTAAATA
1 AAAAATAATTTAAAAAGTAAAATA
94555295 AA
1 AA
94555297 GATAAAAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (24 bp):
AAAAATAATTTAAAAAGTAAAATA
Found at i:94555315 original size:20 final size:20
Alignment explanation
Indices: 94555290--94555328 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
94555280 TTAAAAAGTT
* *
94555290 AAATAAAGATAAAAGTAAAC
1 AAATAAAAATAAAAATAAAC
94555310 AAATAAAAATAAAAATAAA
1 AAATAAAAATAAAAATAAA
94555329 GTAAAGTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAC
Found at i:94562360 original size:19 final size:20
Alignment explanation
Indices: 94562336--94562373 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
94562326 GAGAGAAAGG
94562336 ACAGAG-AAACGGGCCAAAA
1 ACAGAGAAAACGGGCCAAAA
*
94562355 ACAGAGAAAATGGGCCAAA
1 ACAGAGAAAACGGGCCAAA
94562374 GTACGAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.53, C:0.18, G:0.26, T:0.03
Consensus pattern (20 bp):
ACAGAGAAAACGGGCCAAAA
Found at i:94577998 original size:11 final size:10
Alignment explanation
Indices: 94577984--94578034 Score: 52
Period size: 11 Copynumber: 5.1 Consensus size: 10
94577974 AATAAGAAAC
94577984 ATAAAAGATAA
1 ATAAAA-ATAA
*
94577995 ATAAAATAAAA
1 ATAAAA-ATAA
94578006 ATAAAAATAA
1 ATAAAAATAA
*
94578016 A-AATAA-AA
1 ATAAAAATAA
94578024 ATAAAAATAA
1 ATAAAAATAA
94578034 A
1 A
94578035 AATAGAAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
8 3 0.09
9 8 0.24
10 7 0.21
11 15 0.45
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (10 bp):
ATAAAAATAA
Found at i:94578008 original size:6 final size:6
Alignment explanation
Indices: 94577993--94578104 Score: 163
Period size: 6 Copynumber: 18.8 Consensus size: 6
94577983 CATAAAAGAT
* * * * * *
94577993 AAATA- AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAG
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
94578040 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
94578088 AAATAG AAATAG AAATA
1 AAATAG AAATAG AAATA
94578105 AGATAAACCA
Statistics
Matches: 105, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
5 5 0.05
6 100 0.95
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (6 bp):
AAATAG
Found at i:94578421 original size:28 final size:30
Alignment explanation
Indices: 94578380--94578445 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
94578370 TATGACCTCC
94578380 CACACGCCCGTGTGGCTAGGCCATGTCTCA
1 CACACGCCCGTGTGGCTAGGCCATGTCTCA
* *
94578410 CACACGCCTGTGTGGCTAGGCCGTGTCTCA
1 CACACGCCCGTGTGGCTAGGCCATGTCTCA
94578440 CACACG
1 CACACG
94578446 GTCGTGTGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.17, C:0.36, G:0.27, T:0.20
Consensus pattern (30 bp):
CACACGCCCGTGTGGCTAGGCCATGTCTCA
Found at i:94578464 original size:30 final size:30
Alignment explanation
Indices: 94578380--94578465 Score: 84
Period size: 30 Copynumber: 2.9 Consensus size: 30
94578370 TATGACCTCC
* * * *
94578380 CACACGCCCGTGTGGCTAGGCCATGTCTCA
1 CACACGCCTGTGTGCCTAGCCCGTGTCTCA
* *
94578410 CACACGCCTGTGTGGCTAGGCCGTGTCTCA
1 CACACGCCTGTGTGCCTAGCCCGTGTCTCA
* *
94578440 CACACG-GTCGTGTGCCTTGCCCGTGT
1 CACACGCCT-GTGTGCCTAGCCCGTGT
94578466 AACTCTCTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
29 1 0.02
30 48 0.98
ACGTcount: A:0.13, C:0.35, G:0.29, T:0.23
Consensus pattern (30 bp):
CACACGCCTGTGTGCCTAGCCCGTGTCTCA
Found at i:94581626 original size:15 final size:14
Alignment explanation
Indices: 94581608--94581641 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
94581598 GTATGATAAA
94581608 TAATTAAGTTGTTCT
1 TAATTAAG-TGTTCT
*
94581623 TAATTATGTGTTCT
1 TAATTAAGTGTTCT
94581637 TAATT
1 TAATT
94581642 CTTGTTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.56
Consensus pattern (14 bp):
TAATTAAGTGTTCT
Found at i:94585475 original size:55 final size:55
Alignment explanation
Indices: 94585374--94585479 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 55
94585364 CAAAGCATCG
* *
94585374 CACGCCCGTGTGGAAGAACCGTGGTCGAGCCTGCCAAAATAGCACGGGCGTTTGA
1 CACGCCCGTGTGGAACAACCGTGGTCGAGCCTGCCAAAATAACACGGGCGTTTGA
* * ** *
94585429 CACGCCCGTGTGGAACACCCGTGGTTGAAG-CTGTTAAATTAACACGGGCGT
1 CACGCCCGTGTGGAACAACCGTGGTCG-AGCCTGCCAAAATAACACGGGCGT
94585480 GGGGCTTGCA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
55 41 0.95
56 2 0.05
ACGTcount: A:0.24, C:0.26, G:0.31, T:0.19
Consensus pattern (55 bp):
CACGCCCGTGTGGAACAACCGTGGTCGAGCCTGCCAAAATAACACGGGCGTTTGA
Found at i:94602426 original size:3 final size:3
Alignment explanation
Indices: 94602418--94602449 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
94602408 CATTTAACTG
94602418 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
94602450 AAAACTAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:94608181 original size:15 final size:16
Alignment explanation
Indices: 94608154--94608185 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
94608144 AGAAGTTATG
94608154 AATCTTGTTCATCAAA
1 AATCTTGTTCATCAAA
94608170 AATCTT-TTCATCAAA
1 AATCTTGTTCATCAAA
94608185 A
1 A
94608186 GACCAAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.41, C:0.19, G:0.03, T:0.38
Consensus pattern (16 bp):
AATCTTGTTCATCAAA
Found at i:94611224 original size:36 final size:38
Alignment explanation
Indices: 94611194--94611335 Score: 202
Period size: 36 Copynumber: 3.8 Consensus size: 38
94611184 AATCTTTAAG
94611194 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
* * *
94611232 GATA--CAATTTTAGATAGGATATACAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
* *
94611268 GATATGTAATATTAGATATGATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
*
94611304 GATATGCAATCTTAGATATGATATGTAATCTT
1 GATATGCAATCTTAGATATGATATGCAATCTT
94611336 GAATATATGA
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
36 67 0.74
38 24 0.26
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
Found at i:94611259 original size:55 final size:55
Alignment explanation
Indices: 94611192--94611335 Score: 243
Period size: 55 Copynumber: 2.6 Consensus size: 55
94611182 ATAATCTTTA
* *
94611192 AGGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATTTTAGAT
1 AGGATATGCAATCTTAGATATGATATGTAATCTTAGATATGATACAATCTTAGAT
* *
94611247 AGGATATACAATCTTAGATATGATATGTAATATTAGATATGATACAATCTTAGAT
1 AGGATATGCAATCTTAGATATGATATGTAATCTTAGATATGATACAATCTTAGAT
*
94611302 ATGATATGCAATCTTAGATATGATATGTAATCTT
1 AGGATATGCAATCTTAGATATGATATGTAATCTT
94611336 GAATATATGA
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 82 1.00
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (55 bp):
AGGATATGCAATCTTAGATATGATATGTAATCTTAGATATGATACAATCTTAGAT
Found at i:94611341 original size:19 final size:19
Alignment explanation
Indices: 94611194--94611335 Score: 202
Period size: 19 Copynumber: 7.7 Consensus size: 19
94611184 AATCTTTAAG
94611194 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
94611213 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
94611232 GATA--CAATTTTAGATAG
1 GATATGCAATCTTAGATAT
*
94611249 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
94611268 GATATGTAATATTAGATAT
1 GATATGCAATCTTAGATAT
94611287 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
94611304 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
94611323 GATATGTAATCTT
1 GATATGCAATCTT
94611336 GAATATATGA
Statistics
Matches: 109, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
17 30 0.28
19 79 0.72
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:94615208 original size:79 final size:79
Alignment explanation
Indices: 94615077--94615231 Score: 283
Period size: 79 Copynumber: 2.0 Consensus size: 79
94615067 GAAAAATGAC
*
94615077 ACTGTCGACTCCACACAGCTGTGTGTGGGACTGTGTGTGACACGCAGTCTGCGTCATTTGGGTCG
1 ACTGTCGACTCCACACAGCCGTGTGTGGGACTGTGTGTGACACGCAGTCTGCGTCATTTGGGTCG
94615142 TGTTGACCACACGT
66 TGTTGACCACACGT
*
94615156 ACTGTCGACTCCACACAGCCGTGTGTGGGACTGTGTGTGACACGCAGTCTGCGTTATTTGGGTCG
1 ACTGTCGACTCCACACAGCCGTGTGTGGGACTGTGTGTGACACGCAGTCTGCGTCATTTGGGTCG
*
94615221 TGTTTACCACA
66 TGTTGACCACA
94615232 TGGGCGTGTG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 73 1.00
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.28
Consensus pattern (79 bp):
ACTGTCGACTCCACACAGCCGTGTGTGGGACTGTGTGTGACACGCAGTCTGCGTCATTTGGGTCG
TGTTGACCACACGT
Found at i:94618452 original size:25 final size:24
Alignment explanation
Indices: 94618424--94618479 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
94618414 AAAATGGTGA
94618424 GTTTTTTTATACATAAAAAAATATT
1 GTTTTTTTATACAT-AAAAAATATT
94618449 GTTTTTTTATACATAAAAAATATT
1 GTTTTTTTATACATAAAAAATATT
*
94618473 ATTTTTT
1 GTTTTTT
94618480 ATGTAAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 16 0.53
25 14 0.47
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (24 bp):
GTTTTTTTATACATAAAAAATATT
Found at i:94618967 original size:18 final size:18
Alignment explanation
Indices: 94618946--94618981 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
94618936 CAATTAAACC
94618946 ATTTGATTGATATATTTA
1 ATTTGATTGATATATTTA
* *
94618964 ATTTGATTTATTTATTTA
1 ATTTGATTGATATATTTA
94618982 TAATTGAGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (18 bp):
ATTTGATTGATATATTTA
Found at i:94619040 original size:18 final size:18
Alignment explanation
Indices: 94619019--94619061 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
94619009 ACAATTTAAA
94619019 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
94619037 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
94619055 ATGTAAA
1 ATATAAA
94619062 AATAGCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:94624427 original size:62 final size:63
Alignment explanation
Indices: 94624296--94624431 Score: 184
Period size: 62 Copynumber: 2.2 Consensus size: 63
94624286 TGGCCTGGGT
* * ** *
94624296 ACATGCCCGTGTCCCTGACCGTGTGGCTTTTATACCACAAACAGTGAGTTACACGACCTGGGC
1 ACATGCCCGTGTCCCTGACCGTGTGGCTCTTATACCACAAACAGGGAGTTACACGACCCAGAC
** *
94624359 ACATGCCCGTGTCCCTGGTCGTGTGG-TCTTATACCACAAACAGGGAGTTACACGGCCCAGAC
1 ACATGCCCGTGTCCCTGACCGTGTGGCTCTTATACCACAAACAGGGAGTTACACGACCCAGAC
*
94624421 ATATGCCCGTG
1 ACATGCCCGTG
94624432 CTCGTGTGGT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
62 40 0.62
63 24 0.38
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (63 bp):
ACATGCCCGTGTCCCTGACCGTGTGGCTCTTATACCACAAACAGGGAGTTACACGACCCAGAC
Found at i:94625518 original size:229 final size:229
Alignment explanation
Indices: 94625097--94625542 Score: 662
Period size: 229 Copynumber: 1.9 Consensus size: 229
94625087 GTCCTTGGCT
* *
94625097 GTGTGGCGTTGACAGCCACTATTTTCAGCAACCGAAACTTGCAAAAATTAAGATTTTCGGTATGT
1 GTGTGGCGTTGACAGCCACTATTTCCAGCAACCGAAACTTGCAAAAATTAAGATTTTCGGTATGC
* * * *
94625162 ATCTGGTTTTATTTGGCGGAATAACACAGTGGAGACTACCCGAAACCTTGAACAAAACAGAAGGA
66 ACCTAGTTTTATTTGACGGAATAACACAGTGGAGACTACCAGAAACCTTGAACAAAACAGAAGGA
* * *
94625227 ATCAGACTAACTCAGCGGAATAACGTCTCTTGCAATGTCCTCGACTAAACAGTAATCAATCGAGT
131 ATCAGACTAACTCAGCGAAATAACGTCTCTTGCAATATCCTCGACTAAACAGTAACCAATCGAGT
94625292 GTTTAACAGAACGTCAAGCAAACAAGCAAAATCC
196 GTTTAACAGAACGTCAAGCAAACAAGCAAAATCC
* * * * *
94625326 GTGTGGCGTTGACAGCCATTATTTCCAGCGATCGAAACTTGTAAAAATTAAGATTTTTGGTATGC
1 GTGTGGCGTTGACAGCCACTATTTCCAGCAACCGAAACTTGCAAAAATTAAGATTTTCGGTATGC
* * *
94625391 ACCTAGTTTTATTTGACGGAATAGCACAGTGGAGACTACTCAG-AACCTTGTACGAAACAGAAGG
66 ACCTAGTTTTATTTGACGGAATAACACAGTGGAGACTAC-CAGAAACCTTGAACAAAACAGAAGG
* * * *
94625455 AATCAGACTAACAT-GGTGAAATAACGTCTCTTGCAATATCCTCGCCTAAATAGTAACCAATCGA
130 AATCAGACTAAC-TCAGCGAAATAACGTCTCTTGCAATATCCTCGACTAAACAGTAACCAATCGA
*
94625519 GTGTTTAATAGAACGTCAAGCAAA
194 GTGTTTAACAGAACGTCAAGCAAA
94625543 GGAGCAAACT
Statistics
Matches: 193, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
229 190 0.98
230 3 0.02
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.26
Consensus pattern (229 bp):
GTGTGGCGTTGACAGCCACTATTTCCAGCAACCGAAACTTGCAAAAATTAAGATTTTCGGTATGC
ACCTAGTTTTATTTGACGGAATAACACAGTGGAGACTACCAGAAACCTTGAACAAAACAGAAGGA
ATCAGACTAACTCAGCGAAATAACGTCTCTTGCAATATCCTCGACTAAACAGTAACCAATCGAGT
GTTTAACAGAACGTCAAGCAAACAAGCAAAATCC
Found at i:94636548 original size:42 final size:42
Alignment explanation
Indices: 94636478--94636591 Score: 115
Period size: 42 Copynumber: 2.7 Consensus size: 42
94636468 GTTTCAATGT
* * * * *
94636478 CATATCCCTGATATGGTCTTACATGAAAT-ATCATATCGATG-C
1 CATATCCCCGACATGGTCTTATACGAAATCA-CATACCGA-GAC
*
94636520 CATGTCCCCGACATGGTCTTATACGAAATCACATACCGAGAC
1 CATATCCCCGACATGGTCTTATACGAAATCACATACCGAGAC
* * *
94636562 CATATCCCGGATATGGTCTTATACGGAATC
1 CATATCCCCGACATGGTCTTATACGAAATC
94636592 TTAATAACCT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.02
42 58 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (42 bp):
CATATCCCCGACATGGTCTTATACGAAATCACATACCGAGAC
Found at i:94640639 original size:125 final size:125
Alignment explanation
Indices: 94640417--94640662 Score: 456
Period size: 125 Copynumber: 2.0 Consensus size: 125
94640407 TTCGTAGCAA
* *
94640417 ATAAAGCAAGTAAGATATGCCAATATAAGTTACAAATACGACATGAATAATTTTTATACCAACAT
1 ATAAAGCAAGTAAGATATGCCAATATAAGTTACAAATACAACATGAATAATTTTCATACCAACAT
* *
94640482 AATTTTGATAACAATAAATAATTCATGCAATAGGAGTATGTATATATAAACTTTCAACAT
66 AATTTTAATAACAATAAATAATTCATGCAATAGGAGTATGTATATATAAAATTTCAACAT
94640542 ATAAAGCAAGTAAGATATGCCAATATAAGTTACAAATACAACATGAATAATTTTCATACCAACAT
1 ATAAAGCAAGTAAGATATGCCAATATAAGTTACAAATACAACATGAATAATTTTCATACCAACAT
94640607 AATTTTAATAACAATAAATAATTCATGCAATAGGAGTATGTATATATAAAATTTCA
66 AATTTTAATAACAATAAATAATTCATGCAATAGGAGTATGTATATATAAAATTTCA
94640663 TAAAAATAAA
Statistics
Matches: 117, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
125 117 1.00
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.31
Consensus pattern (125 bp):
ATAAAGCAAGTAAGATATGCCAATATAAGTTACAAATACAACATGAATAATTTTCATACCAACAT
AATTTTAATAACAATAAATAATTCATGCAATAGGAGTATGTATATATAAAATTTCAACAT
Found at i:94640872 original size:25 final size:23
Alignment explanation
Indices: 94640836--94640907 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 23
94640826 TTAATAAATT
94640836 TATAT-ATAATAAAATATAAATAA
1 TATATAAT-ATAAAATATAAATAA
94640859 TATATACCATATAAAATAATAAAATAA
1 TATATA--ATATAAAAT-AT-AAATAA
*
94640886 TATATAATATAATAAAATAAAT
1 TATATAATATAA-AATATAAAT
94640908 GGATTTCCAA
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
23 5 0.12
24 4 0.10
25 15 0.36
26 6 0.14
27 12 0.29
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (23 bp):
TATATAATATAAAATATAAATAA
Found at i:94640892 original size:20 final size:20
Alignment explanation
Indices: 94640867--94640905 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
94640857 AATATATACC
94640867 ATATAAAATAATAAAATAAT
1 ATATAAAATAATAAAATAAT
*
94640887 ATATAATATAATAAAATAA
1 ATATAAAATAATAAAATAA
94640906 ATGGATTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
ATATAAAATAATAAAATAAT
Found at i:94640899 original size:23 final size:23
Alignment explanation
Indices: 94640827--94640900 Score: 71
Period size: 27 Copynumber: 3.1 Consensus size: 23
94640817 AATATTTAAT
* * *
94640827 TAATAAATTTATATATAATAAAA
1 TAATAAAATAATATATAATATAA
94640850 T-AT-AAATAATATATACCATATAAAA
1 TAATAAAATAATATATA--ATAT--AA
94640875 TAATAAAATAATATATAATATAA
1 TAATAAAATAATATATAATATAA
94640898 TAA
1 TAA
94640901 AATAAATGGA
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
21 10 0.24
22 2 0.05
23 9 0.21
25 7 0.17
26 2 0.05
27 12 0.29
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (23 bp):
TAATAAAATAATATATAATATAA
Found at i:94640980 original size:21 final size:19
Alignment explanation
Indices: 94640939--94640986 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
94640929 AAAGTATATA
*
94640939 AATATAACATATAATTTTT
1 AATATAAAATATAATTTTT
94640958 AATATAAAATAGTAATATTTT
1 AATATAAAATA-TAAT-TTTT
*
94640979 AAAATAAA
1 AATATAAA
94640987 TAAATTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 10 0.40
20 4 0.16
21 11 0.44
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
AATATAAAATATAATTTTT
Found at i:94640987 original size:20 final size:18
Alignment explanation
Indices: 94640937--94640993 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 18
94640927 ATAAAGTATA
94640937 TAAATATAACATATAATTTT
1 TAAA-ATAA-ATATAATTTT
*
94640957 TAATATAAAATAGTAATATTT
1 TAAAAT-AAATA-TAAT-TTT
94640978 TAAAATAAATA-AATTT
1 TAAAATAAATATAATTT
94640994 ATAAGTGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
17 2 0.06
18 3 0.09
19 5 0.16
20 14 0.44
21 8 0.25
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (18 bp):
TAAAATAAATATAATTTT
Found at i:94642332 original size:18 final size:18
Alignment explanation
Indices: 94642309--94642343 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
94642299 TACAAAACTG
94642309 TTTATTTTATTT-TTTATT
1 TTTA-TTTATTTATTTATT
94642327 TTTATTTATTTATTTAT
1 TTTATTTATTTATTTAT
94642344 GGGCCCGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTATTTATTTATTTATT
Found at i:94642633 original size:44 final size:43
Alignment explanation
Indices: 94642555--94642703 Score: 189
Period size: 44 Copynumber: 3.5 Consensus size: 43
94642545 GGAATGCTAG
* *
94642555 ATCTGTTATCTTCGATCTGCTCTCTGAC----AGAGACGCCAA
1 ATCTGCTATCTTCAATCTGCTCTCTGACAATAAGAGACGCCAA
* *
94642594 ATCTGCTATTTTCGATCTGCTCTCTGACAATATAGAGACGCCAA
1 ATCTGCTATCTTCAATCTGCTCTCTGACAATA-AGAGACGCCAA
* *
94642638 ATCTGATATCTTCAATCTGCTTTCTGACAATACAGAGACGCCAA
1 ATCTGCTATCTTCAATCTGCTCTCTGACAATA-AGAGACGCCAA
*
94642682 ATCTACTATCTTCAATCTGCTC
1 ATCTGCTATCTTCAATCTGCTC
94642704 CTTGTAAACC
Statistics
Matches: 95, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 26 0.27
44 69 0.73
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (43 bp):
ATCTGCTATCTTCAATCTGCTCTCTGACAATAAGAGACGCCAA
Found at i:94643312 original size:44 final size:44
Alignment explanation
Indices: 94643220--94643359 Score: 165
Period size: 44 Copynumber: 3.2 Consensus size: 44
94643210 ATCTGCTATG
* * ** * *
94643220 TCTTCGATTTGCTCTCCGTCGAATATGGAGATGCCAAATTTGTT-
1 TCTTCGATTTGCTCTCTGAC-AATACAGAGACGCCAAATCTGTTA
*
94643264 TCTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCTGTTA
1 TCTTCGATTTGCTCTCTGACAATACAGAGACGCCAAATCTGTTA
* * *
94643308 TCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATCTGCTA
1 TCTTCGATTTGCTCTCTGACAATACAGAGACGCCAAATCTGTTA
*
94643352 TCCTCGAT
1 TCTTCGAT
94643360 CTACTCCTGG
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
43 19 0.23
44 64 0.77
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (44 bp):
TCTTCGATTTGCTCTCTGACAATACAGAGACGCCAAATCTGTTA
Found at i:94643478 original size:222 final size:220
Alignment explanation
Indices: 94642589--94643629 Score: 1198
Period size: 221 Copynumber: 4.7 Consensus size: 220
94642579 TGACAGAGAC
* * *
94642589 GCCAAATCTGCTATT-TTCGATCTGCTCTCTGACAATATAGAGACGCCAAATCTGATATCTTCA-
1 GCCAAATCTG-T-TTCTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCTG-TATCTT-AG
* * * * *
94642652 ATCTGCTTTCTGACAATACAGAGACGCCAAATCTACTATCTTCAATCTGCTCCTTGTAAACCCAA
62 ATCTGCTCTCTAACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCCTTGTAAACGCAA
* * * * * *
94642717 GGATGTCAAATAATCTTAGATCTGCTTCAATGCAAAAAAATCTGAAGGTTAGATCTGCTATGACT
127 GGATGCCAAATCATCTTGGATCTACTTCAATGTAAAAAAATCTGAAGGTTAGATCTGCTATGTCT
*
94642782 TCGATCTGCTTTCCGTCGAATAT-GAAGAT
192 TCGATCTGCTCTCCGTCGAATATGGAA-AT
* *
94642811 GCCAAATCTGTTTCTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATC---ATCTTAGATCT
1 GCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCTGTATCTTAGATCT
* * * * *
94642873 GC-GTC-AGCGTAA-ACACGTGAAAGCCAAATCTGCTATGTCTTTGATCTGCTCCTTGTAAACGC
66 GCTCTCTAAC--AATACA-GAG-ACGCCAAATCTGCTA--TCTTCGATCTGCTCCTTGTAAACGC
* * * * *
94642935 AAGGATGCCCAAATTATCTTGGATCTACTCCAATGTGAAAACATCCGAAGGTTAGATCTGCTATG
125 AAGGATG-CCAAATCATCTTGGATCTACTTCAATGTAAAAAAATCTGAAGGTTAGATCTGCTATG
* *
94643000 TCTTCGATTTGCTCTCCGTCGAATATGGAGAT
189 TCTTCGATCTGCTCTCCGTCGAATATGGAAAT
* ** *
94643032 GCCAAATCTGTTTCTTCGATTTTTTCTCTGACAATACAGAGATTCCAAATC---ATCTTAGATAT
1 GCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCTGTATCTTAGATCT
* * * *
94643094 GCT-TC-AGCGTAA-ACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCTTGTAAACGC
66 GCTCTCTAAC--AATACA-GAG-ACGCCAAATCTGCTA--TCTTCGATCTGCTCCTTGTAAACGC
* *
94643156 AAGGATGCCAAATCATCTTGGATCTACTTCAATGTGAAAACATCTGAAGGTTAGATCTGCTATGT
125 AAGGATGCCAAATCATCTTGGATCTACTTCAATGTAAAAAAATCTGAAGGTTAGATCTGCTATGT
* *
94643221 CTTCGATTTGCTCTCCGTCGAATATGGAGAT
190 CTTCGATCTGCTCTCCGTCGAATATGGAAAT
* *
94643252 GCCAAATTTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTCGATC
1 GCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCTG-TATCTTAGATC
* * *
94643317 TGCTCTCTAACAATACAGAGACGCCAAATCTGCTATCCTCGATCTACTCCTGGTAAACGCAAGGA
65 TGCTCTCTAACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCCTTGTAAACGCAAGGA
* * * *
94643382 TGCCAAATCATCTTGGATCTGCTTCGATGCAAAAAAAATCTGAAGGTTAGATCTGTTATGTCTTC
130 TGCCAAATCATCTTGGATCTACTTCAATG-TAAAAAAATCTGAAGGTTAGATCTGCTATGTCTTC
* *
94643447 GATCTGCTCTCTGTTGAATATGGAAAT
194 GATCTGCTCTCCGTCGAATATGGAAAT
*
94643474 GCCAAATCTGTTTCTTCGATTTGTTCTCTAACAATACAGAGACGCCAAATCTGCTATCATT-GAT
1 GCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCTG-TATC-TTAGAT
* * * * * * *
94643538 CTGTTCCCTGACAATACAGAGACGCCAATTCTGAC-ATCTTCGATCTGCTCCTTGAAAATGCAAT
64 CTGCTCTCTAACAATACAGAGACGCCAAATCTG-CTATCTTCGATCTGCTCCTTGTAAACGCAAG
* *
94643602 GATGCCAAATCATTTTAGATCTACTTCA
128 GATGCCAAATCATCTTGGATCTACTTCA
94643630 GCATAAACAC
Statistics
Matches: 724, Mismatches: 74, Indels: 42
0.86 0.09 0.05
Matches are distributed among these distances:
215 1 0.00
216 6 0.01
217 15 0.02
218 13 0.02
220 164 0.23
221 285 0.39
222 200 0.28
223 17 0.02
224 16 0.02
225 5 0.01
226 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (220 bp):
GCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCTGTATCTTAGATCT
GCTCTCTAACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCCTTGTAAACGCAAGGAT
GCCAAATCATCTTGGATCTACTTCAATGTAAAAAAATCTGAAGGTTAGATCTGCTATGTCTTCGA
TCTGCTCTCCGTCGAATATGGAAAT
Found at i:94643543 original size:44 final size:43
Alignment explanation
Indices: 94643474--94643584 Score: 134
Period size: 44 Copynumber: 2.5 Consensus size: 43
94643464 ATATGGAAAT
* * *
94643474 GCCAAATCTGTTTCTTCGATTTGTTCTCTAACAATACAGAGAC
1 GCCAAATCTGTATCTTCGATCTGTTCCCTAACAATACAGAGAC
*
94643517 GCCAAATCTGCTATCATT-GATCTGTTCCCTGACAATACAGAGAC
1 GCCAAATCTG-TATC-TTCGATCTGTTCCCTAACAATACAGAGAC
* *
94643561 GCCAATTCTGACATCTTCGATCTG
1 GCCAAATCTG-TATCTTCGATCTG
94643585 CTCCTTGAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
43 12 0.21
44 44 0.76
45 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (43 bp):
GCCAAATCTGTATCTTCGATCTGTTCCCTAACAATACAGAGAC
Found at i:94643646 original size:441 final size:441
Alignment explanation
Indices: 94642589--94643661 Score: 1254
Period size: 441 Copynumber: 2.4 Consensus size: 441
94642579 TGACAGAGAC
* * * *
94642589 GCCAAATCTGCTATT-TTCGATCTGCTCTCTGACAATATAGAGACGCCAAATCTGATATCTTCA-
1 GCCAAATCTG-T-TTCTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCTGCTATCTT-AG
* * *
94642652 ATCTGCTT-TCTGACAATACAGAGACGCCAAATCT-ACTATCTTCAATCTGCTCCTTGTAAACCC
63 ATCTGCTTCCCTGACAATACAGAGACGCCAAATCTGACTATCTTCGATCTGCTCCTTGTAAACGC
* * * * *
94642715 AAGGATGTCAAATAATCTTAGATCTGCTTCAATGCAAAAAAATCTGAAGGTTAGATCTGCTATGA
128 AAGGATGCCAAATCATCTTAGATCTACTTCAATGC-AAAACATCTGAAGGTTAGATCTGCTATGT
*
94642780 CTTCGATCTGCTTTCCGTCGAATATGAAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTGACAA
192 CTTCGATCTGCTCTCCGTCGAATATGAAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTGACAA
* * * *
94642845 TACAGAGATGCCAAATCATCTTAGATCTGCGTCAGCGTAAACACGTGAAAGCCAAATCTGCTATG
257 TACAGAGACGCCAAATCATCTTAGATCTGCCTCAACG-AAACACGAGAAAGCCAAATCTGCTA-G
* * * * * **
94642910 TCTTTGATCTGCTCCTTGTAAACGCAAGGATGCCCAAATTATCTTGGATCTACTCCAATGTGAAA
320 TCCTCGATCTACTCCTGGTAAACGCAAGGATGCCCAAATCATCTTGGATCTACTCCAATGAAAAA
* * *
94642975 ACATCCGAAGGTTAGATCTGCTATGTCTTCGATTTGCTCTCCGTCGAATATGGAGAT
385 AAATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAAAT
* ** *
94643032 GCCAAATCTGTTTCTTCGATTTTTTCTCTGACAATACAGAGATTCCAAA--T-C-ATCTTAGATA
1 GCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTAGATC
* * * * *
94643093 TGCTTCAGC-G-TAA-ACACGTGAAAGCCAAATCTG-CTATGTCTTCGATCTACTCCTTGTAAAC
66 TGCTTC-CCTGACAATACA-GAG-ACGCCAAATCTGACTA--TCTTCGATCTGCTCCTTGTAAAC
* *
94643154 GCAAGGATGCCAAATCATCTTGGATCTACTTCAATGTGAAAACATCTGAAGGTTAGATCTGCTAT
126 GCAAGGATGCCAAATCATCTTAGATCTACTTCAATG-CAAAACATCTGAAGGTTAGATCTGCTAT
* * * *
94643219 GTCTTCGATTTGCTCTCCGTCGAATATGGAGATGCCAAATTTGTTTCTTCGATTTGTTCTCTGAC
190 GTCTTCGATCTGCTCTCCGTCGAATATGAAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTGAC
* *
94643284 AATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTAAC-AATACA-GAG-ACGCCAAAT
255 AATACAGAGACGCCAAATC----ATCTTAGATCTGC-CTC-AACGAA-ACACGAGAAAGCCAAAT
* * *
94643346 CTGCTA-TCCTCGATCTACTCCTGGTAAACGCAAGGATG-CCAAATCATCTTGGATCTGCTTCGA
313 CTGCTAGTCCTCGATCTACTCCTGGTAAACGCAAGGATGCCCAAATCATCTTGGATCTACTCCAA
* * * *
94643409 TGCAAAAAAAATCTGAAGGTTAGATCTGTTATGTCTTCGATCTGCTCTCTGTTGAATATGGAAAT
378 TG-AAAAAAAATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAAAT
*
94643474 GCCAAATCTGTTTCTTCGATTTGTTCTCTAACAATACAGAGACGCCAAATCTGCTATCATT-GAT
1 GCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCTGCTATC-TTAGAT
* * *
94643538 CTG-TTCCCTGACAATACAGAGACGCCAATTCTGAC-ATCTTCGATCTGCTCCTTGAAAATGCAA
65 CTGCTTCCCTGACAATACAGAGACGCCAAATCTGACTATCTTCGATCTGCTCCTTGTAAACGCAA
* * * * *
94643601 TGATGCCAAATCATTTTAGATCTACTTC-A-GCATAAACACCTGAAGGTCAGATCTACTATGT
130 GGATGCCAAATCATCTTAGATCTACTTCAATGCA-AAACATCTGAAGGTTAGATCTGCTATGT
94643662 TTTAGCCTGT
Statistics
Matches: 532, Mismatches: 70, Indels: 58
0.81 0.11 0.09
Matches are distributed among these distances:
437 4 0.01
438 16 0.03
439 14 0.03
440 3 0.01
441 206 0.39
442 157 0.30
443 59 0.11
444 16 0.03
445 32 0.06
446 18 0.03
447 7 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (441 bp):
GCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTAGATC
TGCTTCCCTGACAATACAGAGACGCCAAATCTGACTATCTTCGATCTGCTCCTTGTAAACGCAAG
GATGCCAAATCATCTTAGATCTACTTCAATGCAAAACATCTGAAGGTTAGATCTGCTATGTCTTC
GATCTGCTCTCCGTCGAATATGAAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTGACAATACA
GAGACGCCAAATCATCTTAGATCTGCCTCAACGAAACACGAGAAAGCCAAATCTGCTAGTCCTCG
ATCTACTCCTGGTAAACGCAAGGATGCCCAAATCATCTTGGATCTACTCCAATGAAAAAAAATCC
GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAAAT
Found at i:94654459 original size:43 final size:43
Alignment explanation
Indices: 94654398--94654586 Score: 292
Period size: 43 Copynumber: 4.4 Consensus size: 43
94654388 ACATATCATT
* *
94654398 TCACCGGCATTACGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
94654441 TCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
94654484 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* * *
94654527 TCACCAGCACTAAGCCTGTTAGGCACGAAGGCCCGAATATA-A
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
94654569 T-ACCAGCACTAGGCCTGC
1 TCACCGGCACTAAGCCTGC
94654587 GGGATTTATC
Statistics
Matches: 137, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
41 15 0.11
42 2 0.01
43 120 0.88
ACGTcount: A:0.30, C:0.34, G:0.23, T:0.13
Consensus pattern (43 bp):
TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:94659750 original size:18 final size:18
Alignment explanation
Indices: 94659701--94659765 Score: 69
Period size: 18 Copynumber: 3.5 Consensus size: 18
94659691 ATAAATTTAT
*
94659701 ATATAATAAAATATAAATA
1 ATATAATAATATA-AAATA
94659720 ATAT-ATACCATATAAAATA
1 ATATAATA--ATATAAAATA
*
94659739 ATATAATAATATATAATA
1 ATATAATAATATAAAATA
*
94659757 ATAAAATAA
1 ATATAATAA
94659766 ATGGATTTCC
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 20 0.50
19 13 0.32
20 7 0.17
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (18 bp):
ATATAATAATATAAAATA
Found at i:94659758 original size:10 final size:10
Alignment explanation
Indices: 94659699--94659759 Score: 56
Period size: 10 Copynumber: 6.3 Consensus size: 10
94659689 TAATAAATTT
94659699 ATATATAATA
1 ATATATAATA
*
94659709 AAATATAAATA
1 ATATAT-AATA
**
94659720 ATATAT-ACC
1 ATATATAATA
*
94659729 ATATAAAAT-
1 ATATATAATA
94659738 A-ATATAATA
1 ATATATAATA
94659747 ATATATAATA
1 ATATATAATA
94659757 ATA
1 ATA
94659760 AAATAAATGG
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
8 6 0.15
9 8 0.20
10 17 0.43
11 9 0.22
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (10 bp):
ATATATAATA
Found at i:94660067 original size:30 final size:31
Alignment explanation
Indices: 94660027--94660085 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
94660017 AGTCACTGTG
* *
94660027 AGGACCAAATT-GAAACAAAATTAAAATGTT
1 AGGACCAAATTAAAAACAAAAATAAAATGTT
* *
94660057 AGGACTAAATTAAAAATAAAAATAAAATG
1 AGGACCAAATTAAAAACAAAAATAAAATG
94660086 AAATTATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 10 0.42
31 14 0.58
ACGTcount: A:0.59, C:0.07, G:0.12, T:0.22
Consensus pattern (31 bp):
AGGACCAAATTAAAAACAAAAATAAAATGTT
Found at i:94667408 original size:42 final size:42
Alignment explanation
Indices: 94667322--94667444 Score: 135
Period size: 42 Copynumber: 3.0 Consensus size: 42
94667312 TCATACATAT
* * * * *
94667322 AATATCATTTCAATGCTATATCCCTGATATGGTCTTACATGA
1 AATATCATATCAATGCCATATCCCCGATATGGTCTTATACGA
*
94667364 AATATCATATCAATGCCATGTCCCCGATATGGTCTTATACGA
1 AATATCATATCAATGCCATATCCCCGATATGGTCTTATACGA
* *
94667406 AATCA-CATA-CTAAGGCCATAT-CTCGATATGGTCTTATAC
1 AAT-ATCATATC-AATGCCATATCCCCGATATGGTCTTATAC
94667445 AGAATCTTAG
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
41 18 0.26
42 51 0.73
43 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (42 bp):
AATATCATATCAATGCCATATCCCCGATATGGTCTTATACGA
Found at i:94675676 original size:17 final size:18
Alignment explanation
Indices: 94675663--94675857 Score: 108
Period size: 18 Copynumber: 10.9 Consensus size: 18
94675653 TAATCTTCAA
94675663 TGATATGCAATCTTAGATG
1 TGATATGCAATCTTAGA-G
94675682 TGATATGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* * *
94675699 T-ATGATACAATCTTAAATA
1 TGAT-ATGCAATCTTAGA-G
*
94675718 TGAT-TGCAATCTTAGATA
1 TGATATGCAATCTTAGA-G
94675736 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
*
94675752 T-ATGATACAATCTTAGA-
1 TGAT-ATGCAATCTTAGAG
* *
94675769 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
94675788 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* * *
94675804 T-ATGATACAATCTTATATA
1 TGAT-ATGCAATCTTAGA-G
*
94675823 TGAT-TGCAATCTTAGATA
1 TGATATGCAATCTTAGA-G
*
94675841 TGATATACAATCTTAGA
1 TGATATGCAATCTTAGA
94675858 AGATATGATT
Statistics
Matches: 150, Mismatches: 11, Indels: 30
0.79 0.06 0.16
Matches are distributed among these distances:
15 4 0.03
16 4 0.03
17 50 0.33
18 55 0.37
19 31 0.21
20 6 0.04
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (18 bp):
TGATATGCAATCTTAGAG
Found at i:94675731 original size:35 final size:35
Alignment explanation
Indices: 94675670--94675857 Score: 288
Period size: 35 Copynumber: 5.3 Consensus size: 35
94675660 CAATGATATG
*
94675670 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
* *
94675706 CAATCTTAAATATGATTGCAATCTTAGATATGATTG
1 CAATCTTAGATATGATTGCAATCTTAGATATGA-TA
*
94675742 CAATCTTAGATATGA-TACAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
94675776 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
94675811 CAATCTTATATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
94675848 CAATCTTAGA
1 CAATCTTAGA
94675858 AGATATGATT
Statistics
Matches: 139, Mismatches: 9, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
34 16 0.12
35 82 0.59
36 29 0.21
37 12 0.09
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:94676239 original size:30 final size:32
Alignment explanation
Indices: 94676171--94676240 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 32
94676161 CTTTTATAAT
*
94676171 TTATTTTTTTAATAATTTTAGTATTATATCAAA
1 TTATTTTTTTAATAATTCTAGTATTATATC-AA
*
94676204 TTATTTTTTTATTAAATTCTA-TATTAT-TC-A
1 TTATTTTTTTAAT-AATTCTAGTATTATATCAA
94676234 TTATTTT
1 TTATTTT
94676241 AAAAAATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 8 0.24
32 2 0.06
33 18 0.53
34 6 0.18
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (32 bp):
TTATTTTTTTAATAATTCTAGTATTATATCAA
Found at i:94683103 original size:207 final size:207
Alignment explanation
Indices: 94682741--94684063 Score: 2096
Period size: 207 Copynumber: 6.4 Consensus size: 207
94682731 TGACGGAGAG
* * *
94682741 CAAATCTAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
94682806 GCATCTCTGTATT-TCTAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGAC
66 GCATCTCTGTATTGTC-AGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGAC
*
94682870 ACATAGAAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTG
130 ACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTG
94682935 TGCTTACAAGGAA
195 TGCTTACAAGGAA
* * *
94682948 CAAATCGAAGACATAGCTGATTTAGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
* * *
94683013 GCATCTCTGTATTGTCAAAGAACAAATTGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
94683078 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
94683143 GCTTACAAGGAA
196 GCTTACAAGGAA
* *
94683155 CAAATCGAAGACATTGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
* * *
94683220 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATACGACGGAAGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* *
94683285 CATAGCAGATCTGGCCTTCAAATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCTTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
94683350 GCTTACAAGGAA
196 GCTTACAAGGAA
* *
94683362 CAAATTGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
94683427 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* *
94683492 CATAGCAGATCTGGGCTTTAGATG-TTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
94683556 GCTTACAAGGAA
196 GCTTACAAGGAA
* * * **
94683568 CAAATCAAAGACATAGCTAATTTGGCTTTCACGTGCTTACAATGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
* * *
94683633 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGACGTCTCCATATTCGACGGAGGGAAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* * * *
94683698 TATAGCAGATCTGGCGTTCAGATGTTTATACTGAAGCAAGATCCAAAATGGTTTGGCATCCTTGC
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* *
94683763 GCTTACTAGGAG
196 GCTTACAAGGAA
* *
94683775 CAAATCAAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
* *
94683840 GCATCTCTCTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGACAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* * ** * * * * * * *
94683905 TATAGCAGATTTAACCTTTAGATGATTAGACTGAAG-TAGATCCGAGATGGTTTGGTATCCTTGC
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* *
94683969 ACTTACAAGGAG
196 GCTTACAAGGAA
* * *
94683981 CAAAAT-GAAGACATAGCTGATTTGGCTTTCGCGTTTTTACGCTGAAGCAAATCTAAGATGATTT
1 C-AAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTT
*
94684045 GGCATCTCTATATTGTCAG
65 GGCATCTCTGTATTGTCAG
94684064 TGAATAAACT
Statistics
Matches: 1038, Mismatches: 75, Indels: 7
0.93 0.07 0.01
Matches are distributed among these distances:
206 297 0.29
207 739 0.71
208 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (207 bp):
CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTG
GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
GCTTACAAGGAA
Found at i:94683751 original size:413 final size:414
Alignment explanation
Indices: 94682741--94684063 Score: 2123
Period size: 413 Copynumber: 3.2 Consensus size: 414
94682731 TGACGGAGAG
*
94682741 CAAATCTAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
94682806 GCATCTCTGTATT-TCTAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGAC
66 GCATCTCTGTATTGTC-AGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGAC
*
94682870 ACATAGAAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTG
130 ACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTG
* *
94682935 TGCTTACAAGGAACAAATCGAAGACATAGCTGATTTAGCTTCCACGTGTTTACGTTGAAGCAAGT
195 TGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGT
* * *
94683000 CTAAGATGATTTGGCATCTCTGTATTGTCAAAGAACAAATTGAAGTTTGGCATCTCCATATTCGA
260 CTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGA
* *
94683065 CGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGT
325 CGGAGGGCAGACACATAGCAGATCTGGCCTTTAGATGATTATACTGAAGCAAGATCCAAGATGGT
94683130 TTGGCATCCTTGTGCTTACAAGGAA
390 TTGGCATCCTTGTGCTTACAAGGAA
* * * *
94683155 CAAATCGAAGACATTGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
* * *
94683220 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATACGACGGAAGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* *
94683285 CATAGCAGATCTGGCCTTCAAATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCTTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
*
94683350 GCTTACAAGGAACAAATTGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
196 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
94683415 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
261 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
*
94683480 GGAGGGCAGACACATAGCAGATCTGGGCTTTAGATG-TTATACTGAAGCAAGATCCAAGATGGTT
326 GGAGGGCAGACACATAGCAGATCTGGCCTTTAGATGATTATACTGAAGCAAGATCCAAGATGGTT
94683544 TGGCATCCTTGTGCTTACAAGGAA
391 TGGCATCCTTGTGCTTACAAGGAA
* * *
94683568 CAAATCAAAGACATAGCTAATTTGGCTTTCACGTGCTTACAATGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
* * *
94683633 GCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGACGTCTCCATATTCGACGGAGGGAAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* * * *
94683698 TATAGCAGATCTGGCGTTCAGATGTTTATACTGAAGCAAGATCCAAAATGGTTTGGCATCCTTGC
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* * * * *
94683763 GCTTACTAGGAGCAAATCAAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAATC
196 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
*
94683828 TAAGATGATTTGGCATCTCTCTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
261 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
* * * ** * * *
94683893 GGAGGACAGACATATAGCAGATTTAACCTTTAGATGATTAGACTGAAG-TAGATCCGAGATGGTT
326 GGAGGGCAGACACATAGCAGATCTGGCCTTTAGATGATTATACTGAAGCAAGATCCAAGATGGTT
* ** *
94683957 TGGTATCCTTGCACTTACAAGGAG
391 TGGCATCCTTGTGCTTACAAGGAA
* ** *
94683981 CAAAAT-GAAGACATAGCTGATTTGGCTTTCGCGTTTTTACGCTGAAGCAAATCTAAGATGATTT
1 C-AAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTT
*
94684045 GGCATCTCTATATTGTCAG
65 GGCATCTCTGTATTGTCAG
94684064 TGAATAAACT
Statistics
Matches: 840, Mismatches: 66, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
413 485 0.58
414 353 0.42
415 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (414 bp):
CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGAC
GGAGGGCAGACACATAGCAGATCTGGCCTTTAGATGATTATACTGAAGCAAGATCCAAGATGGTT
TGGCATCCTTGTGCTTACAAGGAA
Found at i:94683940 original size:620 final size:620
Alignment explanation
Indices: 94682748--94684063 Score: 2107
Period size: 620 Copynumber: 2.1 Consensus size: 620
94682738 GAGCAAATCT
*
94682748 AAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTC
94682813 TGTATT-TCTAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGA
66 TGTATTGTC-AGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGA
94682877 AGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTAC
130 AGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTAC
* * * ** *
94682942 AAGGAACAAATCGAAGACATAGCTGATTTAGCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGAT
195 AAGGAACAAATCAAAGACATAGCTAATTTAGCTTCCACGTGCTTACAATGAAGCAAATCTAAGAT
** *
94683007 GATTTGGCATCTCTGTATTGTCAAAGAACAAATTGAAGTTTGGCATCTCCATATTCGACGGAGGG
260 GATTTGGCATCTCTGTATTGTCAAAGAACAAATCAAAGTTTGACATCTCCATATTCGACGGAGGG
* *
94683072 CAGACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCAT
325 AAGACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAAATGGTTTGGCAT
* * *
94683137 CCTTGTGCTTACAAGGAACAAATCGAAGACATTGCTGATTTGGCTTTCACGTGTTTACGTTGAAG
390 CCTTGCGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAG
* *
94683202 CAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATA
455 CAAATCTAAGATGATTTGGCATCTCTCTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATA
** * *
94683267 TACGACGGAAGGCAGACACATAGCAGATCTGGCCTTCAAATGTTTATACTGAAGCAAGATCCAAG
520 TACGACGGAAGGCAGACACATAGCAGATCTAACCTTCAAATGATTAGACTGAAG-AAGATCCAAG
* ** *
94683332 ATGGTTTGGCATCTTTGTGCTTACAAGGAACAAATTG
584 ATGGTTTGGCATCCTTGCACTTACAAGGAACAAAATG
* *
94683369 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTC
*
94683434 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCA
66 TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGAA
* *
94683499 GATCTGGGCTTTAGATG-TTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
131 GATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
* *
94683563 AGGAACAAATCAAAGACATAGCTAATTTGGCTTTCACGTGCTTACAATGAAGCAAATCTAAGATG
196 AGGAACAAATCAAAGACATAGCTAATTTAGCTTCCACGTGCTTACAATGAAGCAAATCTAAGATG
* *
94683628 ATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGACGTCTCCATATTCGACGGAGGGA
261 ATTTGGCATCTCTGTATTGTCAAAGAACAAATCAAAGTTTGACATCTCCATATTCGACGGAGGGA
* *
94683693 AGACATATAGCAGATCTGGCGTTCAGATGTTTATACTGAAGCAAGATCCAAAATGGTTTGGCATC
326 AGACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAAATGGTTTGGCATC
* * *
94683758 CTTGCGCTTACTAGGAGCAAATCAAAGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGC
391 CTTGCGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGC
*
94683823 AAATCTAAGATGATTTGGCATCTCTCTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATAT
456 AAATCTAAGATGATTTGGCATCTCTCTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATAT
* * * * * * *
94683888 TCGACGG-AGGACAGACATATAGCAGATTTAACCTTTAGATGATTAGACTGAAGTAGATCCGAGA
521 ACGACGGAAGG-CAGACACATAGCAGATCTAACCTTCAAATGATTAGACTGAAGAAGATCCAAGA
* *
94683952 TGGTTTGGTATCCTTGCACTTACAAGGAGCAAAATG
585 TGGTTTGGCATCCTTGCACTTACAAGGAACAAAATG
* * *
94683988 AAGACATAGCTGATTTGGCTTTCGCGTTTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTC
1 AAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTC
*
94684053 TATATTGTCAG
66 TGTATTGTCAG
94684064 TGAATAAACT
Statistics
Matches: 639, Mismatches: 54, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
619 113 0.18
620 386 0.60
621 138 0.22
622 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (620 bp):
AAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTC
TGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGAA
GATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACA
AGGAACAAATCAAAGACATAGCTAATTTAGCTTCCACGTGCTTACAATGAAGCAAATCTAAGATG
ATTTGGCATCTCTGTATTGTCAAAGAACAAATCAAAGTTTGACATCTCCATATTCGACGGAGGGA
AGACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAAATGGTTTGGCATC
CTTGCGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGC
AAATCTAAGATGATTTGGCATCTCTCTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATAT
ACGACGGAAGGCAGACACATAGCAGATCTAACCTTCAAATGATTAGACTGAAGAAGATCCAAGAT
GGTTTGGCATCCTTGCACTTACAAGGAACAAAATG
Found at i:94684448 original size:19 final size:19
Alignment explanation
Indices: 94684423--94684530 Score: 145
Period size: 17 Copynumber: 5.9 Consensus size: 19
94684413 ATAATCTTCA
*
94684423 ATGATATGCAATATTAGAT
1 ATGATATGCAATCTTAGAT
*
94684442 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
94684461 ATG--ATCCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
94684478 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
94684496 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
94684513 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
94684531 AGATATGATT
Statistics
Matches: 79, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
17 33 0.42
18 17 0.22
19 29 0.37
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:94684492 original size:35 final size:36
Alignment explanation
Indices: 94684431--94684530 Score: 157
Period size: 35 Copynumber: 2.8 Consensus size: 36
94684421 CAATGATATG
* * *
94684431 CAATATTAGATGTGATATGCAATCTTAGATATGATC
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
94684467 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
*
94684502 CAATCTTAGATATGATATACAATCTTAGA
1 CAATCTTAGATATGATATGCAATCTTAGA
94684531 AGATATGATT
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
35 34 0.58
36 25 0.42
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (36 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGATA
Found at i:94684518 original size:22 final size:20
Alignment explanation
Indices: 94684457--94684539 Score: 65
Period size: 19 Copynumber: 4.5 Consensus size: 20
94684447 ATGCAATCTT
*
94684457 AGATATGATCCAATCTT---
1 AGATATGATACAATCTTAGA
*
94684474 AGATATGATTGCAATCTT---
1 AGATATGA-TACAATCTTAGA
94684492 AGATATGATACAATCTTAG-
1 AGATATGATACAATCTTAGA
*
94684511 ATATGAT-ATACAATCTTAGA
1 AGAT-ATGATACAATCTTAGA
94684531 AGATATGAT
1 AGATATGAT
94684540 TTTGTAATCT
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
17 16 0.29
18 16 0.29
19 17 0.30
20 7 0.12
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (20 bp):
AGATATGATACAATCTTAGA
Found at i:94691958 original size:19 final size:20
Alignment explanation
Indices: 94691922--94691966 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
94691912 AATGATAAAA
94691922 AATAAATTTCAATAAAATTT
1 AATAAATTTCAATAAAATTT
* *
94691942 ATTAAATTT-ATTAAAATTT
1 AATAAATTTCAATAAAATTT
94691961 AATAAA
1 AATAAA
94691967 AATTATAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
AATAAATTTCAATAAAATTT
Found at i:94691967 original size:10 final size:10
Alignment explanation
Indices: 94691925--94691976 Score: 54
Period size: 10 Copynumber: 5.3 Consensus size: 10
94691915 GATAAAAAAT
94691925 AAATTTCAATA
1 AAATTT-AATA
*
94691936 AAATTT-ATT
1 AAATTTAATA
*
94691945 AAATTTATTA
1 AAATTTAATA
94691955 AAATTTAATA
1 AAATTTAATA
*
94691965 AAAATT-ATA
1 AAATTTAATA
94691974 AAA
1 AAA
94691977 ATGAAAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
9 14 0.40
10 15 0.43
11 6 0.17
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (10 bp):
AAATTTAATA
Found at i:94691975 original size:19 final size:19
Alignment explanation
Indices: 94691933--94692006 Score: 71
Period size: 19 Copynumber: 3.9 Consensus size: 19
94691923 ATAAATTTCA
* *
94691933 ATAAAATTT-ATTAAATTT
1 ATAAAATTTAATAAAAATT
94691951 ATTAAAATTTAATAAAAATT
1 A-TAAAATTTAATAAAAATT
* * *
94691971 ATAAAAATGAAAAAAAATT
1 ATAAAATTTAATAAAAATT
*
94691990 -TAAAATTTTATAAAAAT
1 ATAAAATTTAATAAAAAT
94692007 CGTAAATAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
18 14 0.31
19 23 0.51
20 8 0.18
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (19 bp):
ATAAAATTTAATAAAAATT
Found at i:94697946 original size:14 final size:15
Alignment explanation
Indices: 94697919--94697983 Score: 58
Period size: 15 Copynumber: 4.1 Consensus size: 15
94697909 CATTTTTTAA
*
94697919 ATTTTTTTATTATAT
1 ATTTTGTTATTATAT
94697934 ATTTTGTTATATATATTT
1 ATTTTGTTAT-TATA--T
*
94697952 ATTTTGTTATTTTAT
1 ATTTTGTTATTATAT
* *
94697967 ATGTTATATATTATAT
1 ATTTTGT-TATTATAT
94697983 A
1 A
94697984 CTATTTATGT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
15 15 0.37
16 12 0.29
17 3 0.07
18 11 0.27
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (15 bp):
ATTTTGTTATTATAT
Found at i:94709883 original size:43 final size:44
Alignment explanation
Indices: 94709835--94709917 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 44
94709825 AATCCAAGAT
** *
94709835 GATTTGGCATCTCTGTATT-GTCAGAGAACAAATCGAAGAAACA
1 GATTTGGCATCTCCATATTCGACAGAGAACAAATCGAAGAAACA
* *
94709878 GATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGA
1 GATTTGGCATCTCCATATTCGACAGAGAACAAATCGAAGA
94709918 CATAGCAGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
43 17 0.50
44 17 0.50
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (44 bp):
GATTTGGCATCTCCATATTCGACAGAGAACAAATCGAAGAAACA
Found at i:94710175 original size:220 final size:220
Alignment explanation
Indices: 94709787--94710358 Score: 833
Period size: 220 Copynumber: 2.6 Consensus size: 220
94709777 CAGGCTAATG
* ** * * * *
94709787 CATAGTAGATCTGGCCTTCAGATGTTTACACTGAAGCAAATCCAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATCTAACCTTCAAATGTTAACACTGAAGCAGATCCAAGATGATTTGGTATCTCTGTA
* *
94709852 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAG
66 TTGTCGGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
*
94709917 ACATAGCAGATCTAACCTTAGAATGTTTTCACATCAAAG-AGGATCCAAGATGATTTGGCATCTT
131 ACATAGCAGATCTAACCTTAGAATGTTTTCACATCAAAGCA-GATCCAAGATGATTTGGCATCCT
* *
94709981 TGTGTTTACAAGGAACAAATCGAAGG
195 CGTGTTTACAAGGAACAAATCGAAGA
* * * **
94710007 CATCGCAGATCTGACTTTCAAATGTTAATGCTGAAGCAGATCCAAGATGATTTGGTATCTCTGTA
1 CATAGCAGATCTAACCTTCAAATGTTAACACTGAAGCAGATCCAAGATGATTTGGTATCTCTGTA
94710072 TTGTCGGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
66 TTGTCGGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
* *
94710137 ACATAGCAGATCTAACCTTTGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCCTC
131 ACATAGCAGATCTAACCTTAGAATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCCTC
*
94710202 GTGTTTACAAGGAGCAAATCGAAGA
196 GTGTTTACAAGGAACAAATCGAAGA
* * *
94710227 CATAGCAGATCTAACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGTATTTCTGTA
1 CATAGCAGATCTAACCTTCAAATGTTAACACTGAAGCAGATCCAAGATGATTTGGTATCTCTGTA
** * * * * *
94710292 TTTGTCAGG-GAACAAATCGAAGAAGTAGATTTGACATATCTATGTTCGACGGAGAGCAAATCGA
66 -TTGTC-GGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGA
94710356 AGA
129 AGA
94710359 TATCAACATG
Statistics
Matches: 316, Mismatches: 33, Indels: 5
0.89 0.09 0.01
Matches are distributed among these distances:
220 257 0.81
221 57 0.18
222 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.27
Consensus pattern (220 bp):
CATAGCAGATCTAACCTTCAAATGTTAACACTGAAGCAGATCCAAGATGATTTGGTATCTCTGTA
TTGTCGGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
ACATAGCAGATCTAACCTTAGAATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCCTC
GTGTTTACAAGGAACAAATCGAAGA
Found at i:94712044 original size:16 final size:15
Alignment explanation
Indices: 94712013--94712047 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
94712003 CATTTTTTAA
*
94712013 ATTTTTTTATTATAT
1 ATTTTGTTATTATAT
94712028 ATTTTGTTATATATAT
1 ATTTTGTTAT-TATAT
94712044 ATTT
1 ATTT
94712048 ATTTTGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (15 bp):
ATTTTGTTATTATAT
Found at i:94716959 original size:21 final size:21
Alignment explanation
Indices: 94716935--94716977 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
94716925 GCGGTCGTAG
94716935 AGGTTTATTAGTCCATAAGTC
1 AGGTTTATTAGTCCATAAGTC
94716956 AGGTTTATTAGTCCATAAGTC
1 AGGTTTATTAGTCCATAAGTC
94716977 A
1 A
94716978 TGTGCCAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (21 bp):
AGGTTTATTAGTCCATAAGTC
Found at i:94732609 original size:46 final size:46
Alignment explanation
Indices: 94732557--94732784 Score: 305
Period size: 46 Copynumber: 5.0 Consensus size: 46
94732547 AGTGTGCTCT
* *
94732557 CTGATATGAAATGTGTAAGACCTTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
94732603 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
94732649 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
94732695 GTGATATGAAATGAATAGGACCATGGTTTAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
94732741 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
94732785 TCATGTCAAA
Statistics
Matches: 165, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 164 0.99
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:94745607 original size:57 final size:51
Alignment explanation
Indices: 94745499--94745602 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
94745489 TTTATTTTTC
94745499 TTGCAAGTTAATTTTATTTTTATTTTTATTATTATTTAATTTAATTTCTCT
1 TTGCAAGTTAATTTTATTTTTATTTTTATTATTATTTAATTTAATTTCTCT
94745550 TTGCAAGTTAATTTTATTTTTATTTTTATTATTATTTAATTTAATTTCTCT
1 TTGCAAGTTAATTTTATTTTTATTTTTATTATTATTTAATTTAATTTCTCT
94745601 TT
1 TT
94745603 CTCTTGGAAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.25, C:0.06, G:0.04, T:0.65
Consensus pattern (51 bp):
TTGCAAGTTAATTTTATTTTTATTTTTATTATTATTTAATTTAATTTCTCT
Found at i:94749108 original size:20 final size:20
Alignment explanation
Indices: 94749065--94749110 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
94749055 AAAATAATCT
* *
94749065 TCATTTTTCTCATTTTACTT
1 TCATTTTGCTCATTTTACTA
94749085 TCATTTTGCTCATTATT-CTA
1 TCATTTTGCTCATT-TTACTA
94749105 TCATTT
1 TCATTT
94749111 AATTTGCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.17, C:0.20, G:0.02, T:0.61
Consensus pattern (20 bp):
TCATTTTGCTCATTTTACTA
Found at i:94753271 original size:46 final size:46
Alignment explanation
Indices: 94753044--94753270 Score: 321
Period size: 46 Copynumber: 4.9 Consensus size: 46
94753034 TTTGACATGA
* * * * *
94753044 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
*
94753090 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
94753136 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCTCGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
94753182 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
94753228 TACCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
94753271 GAGACCACAC
Statistics
Matches: 166, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 162 0.98
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:94757016 original size:15 final size:15
Alignment explanation
Indices: 94756987--94757060 Score: 60
Period size: 14 Copynumber: 4.6 Consensus size: 15
94756977 CTTCTTGCTC
*
94756987 TCCTTCTCTTCTTTTT
1 TCCTT-TCTTTTTTTT
94757003 TCCTTTC-TTTTTTT
1 TCCTTTCTTTTTTTT
94757017 TCCTTCTCTTTTCTTTCT
1 TCCTT-TCTTTT-TTT-T
* *
94757035 TTCTTTCCTCTTTCTTT
1 TCCTTT-CT-TTTTTTT
94757052 TCCTTTCTT
1 TCCTTTCTT
94757061 GCCTCTCCTC
Statistics
Matches: 48, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
14 11 0.23
15 5 0.10
16 10 0.21
17 10 0.21
18 9 0.19
19 3 0.06
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (15 bp):
TCCTTTCTTTTTTTT
Found at i:94757028 original size:25 final size:25
Alignment explanation
Indices: 94756994--94757060 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 25
94756984 CTCTCCTTCT
* *
94756994 CTTCTTTTTTCCTTTCTTTTTTTTC
1 CTTCTCTTTTCCTTTCTTTTCTTTC
94757019 CTTCTCTTTT-CTTTC-TTTCTTTC
1 CTTCTCTTTTCCTTTCTTTTCTTTC
*
94757042 CTCTTTCTTTTCCTTTCTT
1 CT-TCTCTTTTCCTTTCTT
94757061 GCCTCTCCTC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
23 9 0.25
24 12 0.33
25 14 0.39
26 1 0.03
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (25 bp):
CTTCTCTTTTCCTTTCTTTTCTTTC
Found at i:94757074 original size:21 final size:20
Alignment explanation
Indices: 94757028--94757074 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
94757018 CCTTCTCTTT
* *
94757028 TCTTT-CTTTCTTTCCTCTT
1 TCTTTCCTTTCTTGCCTCTC
94757047 TCTTTTCCTTTCTTGCCTCTCC
1 TC-TTTCCTTTCTTGCCTCT-C
94757069 TCTTTC
1 TCTTTC
94757075 TTCCTCATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 2 0.09
20 3 0.13
21 16 0.70
22 2 0.09
ACGTcount: A:0.00, C:0.36, G:0.02, T:0.62
Consensus pattern (20 bp):
TCTTTCCTTTCTTGCCTCTC
Found at i:94757076 original size:26 final size:24
Alignment explanation
Indices: 94757023--94757076 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 24
94757013 TTTTTCCTTC
* *
94757023 TCTTTTCTTTCTTTCTTTCCTCTT
1 TCTTTTCTTTCTTCCTCTCCTCTT
94757047 TCTTTTCCTTTCTTGCCTCTCCTCTT
1 TCTTTT-CTTTCTT-CCTCTCCTCTT
94757073 TCTT
1 TCTT
94757077 CCTCATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 6 0.23
25 7 0.27
26 13 0.50
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.65
Consensus pattern (24 bp):
TCTTTTCTTTCTTCCTCTCCTCTT
Found at i:94757370 original size:3 final size:3
Alignment explanation
Indices: 94757362--94757448 Score: 54
Period size: 3 Copynumber: 28.0 Consensus size: 3
94757352 TTTATTTTTA
* * *
94757362 ATT ATT ATT CTT CATT ATT ATT ATT ACT GTT ATT ATT CATT A-T ATT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT
* *
94757408 -TGCT ATT AAGT ATT ATT ATT ATG ATT ATT -TT GATT ATT ATT
1 AT--T ATT -ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT
94757449 CCTTTATTAC
Statistics
Matches: 65, Mismatches: 10, Indels: 18
0.70 0.11 0.19
Matches are distributed among these distances:
2 5 0.08
3 49 0.75
4 10 0.15
5 1 0.02
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:94778856 original size:22 final size:21
Alignment explanation
Indices: 94778826--94778891 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
94778816 TACAAATTAA
94778826 ATCTCCAAGATTACGAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
94778848 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
94778869 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
94778888 ATCT
1 ATCT
94778892 AAGATTGCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:94778878 original size:19 final size:19
Alignment explanation
Indices: 94778843--94778904 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
94778833 AGATTACGAG
94778843 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
94778864 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
94778883 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
94778902 ATC
1 ATC
94778905 CTTAAAGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
20 1 0.02
21 8 0.20
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:94780768 original size:19 final size:20
Alignment explanation
Indices: 94780744--94780789 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
94780734 CATCCAAACA
*
94780744 CCAGAAAGGTAAATCA-TTT
1 CCAGAAAAGTAAATCATTTT
94780763 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
94780783 CCAGAAA
1 CCAGAAA
94780790 TCATTTTTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:94781730 original size:26 final size:26
Alignment explanation
Indices: 94781696--94781766 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 26
94781686 CATTCTGACC
*
94781696 CACAACTCGTGTGAGCA-AGCCCATTT
1 CACAGCTCGTGTGAGCATA-CCCATTT
**
94781722 CACAGCTCGTGTGAGCATATTCATTT
1 CACAGCTCGTGTGAGCATACCCATTT
*
94781748 CACAGCTCGTGTGGGCATA
1 CACAGCTCGTGTGAGCATA
94781767 TATGTACAGG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 39 0.98
27 1 0.03
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCATACCCATTT
Found at i:94781767 original size:26 final size:26
Alignment explanation
Indices: 94781717--94781767 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
94781707 TGAGCAAGCC
94781717 CATTTCACAGCTCGTGTGAGCATATT
1 CATTTCACAGCTCGTGTGAGCATATT
*
94781743 CATTTCACAGCTCGTGTGGGCATAT
1 CATTTCACAGCTCGTGTGAGCATAT
94781768 ATGTACAGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33
Consensus pattern (26 bp):
CATTTCACAGCTCGTGTGAGCATATT
Found at i:94788337 original size:22 final size:21
Alignment explanation
Indices: 94788302--94788377 Score: 59
Period size: 22 Copynumber: 3.7 Consensus size: 21
94788292 AAAAGGTATC
* * *
94788302 TACAAATTAAATCTCTAATAT
1 TACAAATCATATCTCTAAGAT
94788323 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
94788346 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
94788365 TGC-AATCATATCT
1 TACAAATCATATCT
94788378 AAGATTGTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 9 0.20
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:94788394 original size:35 final size:37
Alignment explanation
Indices: 94788331--94788428 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
94788321 ATTACAAAAT
94788331 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
94788367 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
94788402 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
94788429 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:94788436 original size:17 final size:19
Alignment explanation
Indices: 94788338--94788428 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
94788328 AATCATATCT
94788338 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
94788357 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
94788375 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
94788392 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
94788411 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
94788429 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:94788907 original size:45 final size:45
Alignment explanation
Indices: 94788801--94788925 Score: 189
Period size: 45 Copynumber: 2.8 Consensus size: 45
94788791 TTTGATCTGT
* * *
94788801 TCCCCATCTAATACAGAGACGCCAAATCTGTT-TCTTCAATCTAC
1 TCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCAATCTAC
* *
94788845 TCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCAATTTTC
1 TCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCAATCTAC
*
94788890 TCCCCGTCTAATACAGAGATGCCAAATCTGTCATCT
1 TCCCCGTCTAATACAGAGATGCCAAATCTGTTATCT
94788926 TGGATCTACT
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
44 30 0.41
45 44 0.59
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.30
Consensus pattern (45 bp):
TCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCAATCTAC
Found at i:94789078 original size:78 final size:78
Alignment explanation
Indices: 94788949--94789242 Score: 455
Period size: 78 Copynumber: 3.8 Consensus size: 78
94788939 ATGTAAACAC
94788949 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
94789014 TGGATCTGCTTCA
66 TGGATCTGCTTCA
** *
94789027 ATGAAGGTCCA-ATCTATTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATA
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
94789091 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * *
94789105 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCG
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
94789170 TGTATCTGCTTCA
66 TGGATCTGCTTCA
* * * * **
94789183 ATGAAGGTTAGATCTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAAT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAAT
94789243 TTGTTTCTTC
Statistics
Matches: 196, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
77 2 0.01
78 192 0.98
79 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:94801016 original size:17 final size:18
Alignment explanation
Indices: 94800994--94801030 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
94800984 GATATGATAC
*
94800994 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
94801011 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
94801029 TA
1 TA
94801031 GGGAAACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:94801356 original size:18 final size:18
Alignment explanation
Indices: 94801318--94801389 Score: 101
Period size: 17 Copynumber: 3.9 Consensus size: 18
94801308 AATCATATCT
*
94801318 TCTAAGATTGGATATCATA
1 TCTAAGATTGCA-ATCATA
*
94801337 TCTAAGATTGCAACCATA
1 TCTAAGATTGCAATCATA
94801355 TCTAAGATTGC-ATCATA
1 TCTAAGATTGCAATCATA
94801372 TCTAAGATTGCATATCAT
1 TCTAAGATTGCA-ATCAT
94801390 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
17 16 0.33
18 16 0.33
19 16 0.33
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:94811644 original size:24 final size:25
Alignment explanation
Indices: 94811617--94811666 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
94811607 AAAATTTTAA
94811617 TAAATAAAAAAT-ATATTAAAT-TAT
1 TAAATAAAAAATAATA-TAAATATAT
*
94811641 TAAATTAAAAATAATATAAATATAT
1 TAAATAAAAAATAATATAAATATAT
94811666 T
1 T
94811667 TTTCAAAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (25 bp):
TAAATAAAAAATAATATAAATATAT
Found at i:94812446 original size:38 final size:38
Alignment explanation
Indices: 94812395--94812470 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
94812385 GAATTTAAAT
*
94812395 TAATGTAATATATCTTATTATTGCATTTAATACTTTAC
1 TAATGTAATATATCTTATTATTGCATTTAACACTTTAC
94812433 TAATGTAATATATCTTATTATTGCATTTAACACTTTAC
1 TAATGTAATATATCTTATTATTGCATTTAACACTTTAC
94812471 GATGTCTGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.05, T:0.49
Consensus pattern (38 bp):
TAATGTAATATATCTTATTATTGCATTTAACACTTTAC
Found at i:94812951 original size:12 final size:11
Alignment explanation
Indices: 94812930--94812959 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
94812920 ATCTTCTACC
94812930 CCTTTTTTTTT
1 CCTTTTTTTTT
94812941 CCTTCTTTTTTT
1 CCTT-TTTTTTT
94812953 CCTTTTT
1 CCTTTTT
94812960 ACTGTCTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (11 bp):
CCTTTTTTTTT
Found at i:94817484 original size:38 final size:38
Alignment explanation
Indices: 94817442--94817572 Score: 172
Period size: 38 Copynumber: 3.4 Consensus size: 38
94817432 TGTATTACCG
* *
94817442 AATACATGTTAAGCATGCCTACTGCTACTGTTGAACCA
1 AATACATGTTAAGCATGCCTACTGTTACTGTTGAACTA
* * * *
94817480 AATACATGTTAAGCATACCTACTATTACTGTTAAACTG
1 AATACATGTTAAGCATGCCTACTGTTACTGTTGAACTA
* * *
94817518 AATACATGATAAGCATGTCTAATGTTACTGTTGAACTA
1 AATACATGTTAAGCATGCCTACTGTTACTGTTGAACTA
*
94817556 AAAACATGTTAAGCATG
1 AATACATGTTAAGCATG
94817573 TCTAATATTT
Statistics
Matches: 78, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 78 1.00
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.31
Consensus pattern (38 bp):
AATACATGTTAAGCATGCCTACTGTTACTGTTGAACTA
Found at i:94826506 original size:22 final size:22
Alignment explanation
Indices: 94826456--94826511 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
94826446 TTTTCATAAC
*
94826456 ATTCTCTC-AAAAATCTCTCAA
1 ATTCTCTCTAAAAATATCTCAA
* *
94826477 A-CCACTCTAAAAATATCTCAA
1 ATTCTCTCTAAAAATATCTCAA
*
94826498 ATTCTCTCTTAAAA
1 ATTCTCTCTAAAAA
94826512 CTTTTACTAA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
20 4 0.15
21 14 0.52
22 9 0.33
ACGTcount: A:0.41, C:0.27, G:0.00, T:0.32
Consensus pattern (22 bp):
ATTCTCTCTAAAAATATCTCAA
Found at i:94854818 original size:75 final size:75
Alignment explanation
Indices: 94854692--94855584 Score: 999
Period size: 76 Copynumber: 11.8 Consensus size: 75
94854682 TATGTGGATG
* * *
94854692 TTTC-ATTTCTGTTT-TCAAAAAAATCAACTCATAATTGCGAGAGGTGGGTTGAGCCTCGGGGCA
1 TTTCAATTTCTGTTTGTCAAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
94854755 CGCTAAGGTAT
65 CGCTGAGGTAT
* *
94854766 TTTCAATTACTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
1 TTTCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
94854831 GCTGAGGTAT
66 GCTGAGGTAT
* * *
94854841 TTTCAATTAT-TGTTTGTAAAAAAAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCT-TGGAG
1 TTTCAATT-TCTGTTTGT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA-
94854904 CACGCTGAGGTAT
63 CACGCTGAGGTAT
94854917 TTTCAATTAT-TGTTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGAC
1 TTTCAATT-TCTGTTTGTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* *
94854980 ACACTGAGGTAA
64 ACGCTGAGGTAT
* * *
94854992 TTTCAATTTTTGTTTGTC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAT
1 TTTCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
94855054 GCTGAGGTAT
66 GCTGAGGTAT
* * * ***
94855064 TGTCAATTTTTTGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTCAA-TTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
94855129 CGCTGAGGTAA
65 CGCTGAGGTAT
* *
94855140 TTTCAATTTCTGTTTGTC---AAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACAT
1 TTTCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
94855202 GCCGAGGTAT
66 GCTGAGGTAT
* * ** * *
94855212 TTTCAATTTCTGTTTTTTCAAAAAGATCAACTCACGTTGCGAGAGGTAAGTTGAGCCTCGGGTCA
1 TTTCAATTTCTG-TTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--A
*
94855277 CACGCCGAGGTAT
63 CACGCTGAGGTAT
* * **
94855290 TTTCAATTTCTGTTTTTTCAAAAAGATCAACTCACGTTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTCAATTTCTG-TTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
94855355 CGCTGAGGTAA
65 CGCTGAGGTAT
* * * *
94855366 TTTCAATTTCTATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
94855429 GCTGAGGTAT
66 GCTGAGGTAT
* * * *
94855439 TTTCAATTAATGTGTTTTTC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTC
1 TTTCAATT--TCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--
* *
94855502 ACATGTTGAGGTAT
62 ACACGCTGAGGTAT
* *
94855516 TTTCAAAATCTGCTTTTCAAATTAAGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTC--AAT-TTC-TGT----TT--G--TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
94855581 GCCT
54 GCCT
94855585 TAGCTCACGT
Statistics
Matches: 723, Mismatches: 60, Indels: 57
0.86 0.07 0.07
Matches are distributed among these distances:
71 36 0.05
72 80 0.11
73 72 0.10
74 5 0.01
75 154 0.21
76 242 0.33
77 15 0.02
78 73 0.10
79 5 0.01
80 1 0.00
83 2 0.00
87 2 0.00
89 36 0.05
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.32
Consensus pattern (75 bp):
TTTCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTAT
Found at i:94855190 original size:148 final size:147
Alignment explanation
Indices: 94854711--94855584 Score: 934
Period size: 148 Copynumber: 5.8 Consensus size: 147
94854701 TGTTTTCAAA
* * * * **
94854711 AAAATCAACTCATAATTGCGAGAGGTGGGTTGAGCCTCGGGGCACGCTAAGGTATTTTCAATTAC
1 AAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTT
* *** *
94854776 TGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAT
65 TGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
*
94854841 TTTCAATTAT-TGTTTGTAAAAA
130 TTTCAATT-TCTGTTTGT----C
* * *
94854863 AAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCT-TGGAGCACGCTGAGGTATTTTCAATTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA-CACGCTGAGGTATTTTCAATTTT
* *** *
94854927 TGTTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGACACACTGAGGTA
65 TGTATGT-TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
* *
94854991 ATTTCAATTTTTGTTTGTC
129 TTTTCAATTTCTGTTTGTC
* * *
94855010 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTGAGGTATTGTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA-TTTT
*
94855075 TGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
65 TGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
94855140 TTTCAATTTCTGTTTGTC
130 TTTCAATTTCTGTTTGTC
* * * *
94855158 AAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACATGCCGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTT
* ** * * *
94855223 GT-TTTTTCAAAAAGATCAACTCACGTTGCGAGAGGTAAGTTGAGCCTCGGGTCACACGCCGAGG
66 GTATGTTTC-AAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGG
*
94855287 TATTTTCAATTTCTGTTTTTTC
127 TATTTTCAATTTCTG-TTTGTC
** *
94855309 AAAAAGATCAACTCACGTTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA--
1 --AAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
* * * *
94855372 TTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGT
63 TTTGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
* *
94855437 ATTTTCAATTAATGTGTTTTTC
128 ATTTTCAATT--TCTGTTTGTC
* * * *
94855459 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGTTGAGGTATTTTCAAAA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTC--AA
94855524 TCTGCTTT-TCAAATTAAGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
61 T-T--TTTGT---A-T--GTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
94855585 TAGCTCACGT
Statistics
Matches: 630, Mismatches: 58, Indels: 56
0.85 0.08 0.08
Matches are distributed among these distances:
146 5 0.01
147 99 0.16
148 166 0.26
149 24 0.04
150 48 0.08
151 120 0.19
152 61 0.10
153 9 0.01
154 51 0.08
156 1 0.00
157 3 0.00
159 1 0.00
160 1 0.00
162 4 0.01
164 37 0.06
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (147 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTT
GTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
TTCAATTTCTGTTTGTC
Found at i:94855344 original size:226 final size:220
Alignment explanation
Indices: 94854692--94855584 Score: 1003
Period size: 226 Copynumber: 3.9 Consensus size: 220
94854682 TATGTGGATG
* * *
94854692 TTTC-ATTTCTGTTT-TCAAAAAAATCAACTCATAATTGCGAGAGGTGGGTTGAGCCTCGGGGCA
1 TTTCAATTTCTGTTTGTC--AAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
94854755 CGCTAAGGTATTTTCAATTACTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
63 CGCTGAGGTATTTTCAATTACTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*** *
94854820 CCTCAGGG-CACGCTGAGGTATTTTCAATTATTGTTTGTAAAAAAAAATCAACTCATATTGCGGG
126 CCTC-GGGACACGCTGAGGTATTTTCAATT-TTGTTT-TTTCAAAAAATCAACTCATATTGCGAG
* *
94854884 AGGTGAGTTGAGCCT-TGGAGCACGCTGAGGTAT
188 AGGTGAGTTGAGCCTCAGGA-CACGCTGAGGTAA
94854917 TTTCAATTAT-TGTTTGTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGAC
1 TTTCAATT-TCTGTTTGTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* * **
94854980 ACACTGAGGTAATTTCAATTTTTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
62 ACGCTGAGGTATTTTCAATTACTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
** * * *
94855044 CTCAAGACATGCTGAGGTATTGTCAATTTTTTGTATGTTTC-AAAAATCAACTCATATTGCGAGA
127 CTCGGGACACGCTGAGGTATTTTCAA--TTTTGT-TTTTTCAAAAAATCAACTCATATTGCGAGA
94855108 GGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
189 GGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
* *
94855140 TTTCAATTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGACATGC
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* * * ** *
94855204 CGAGGTATTTTCAATTTCTGTTTTTTCAAAAAGATCAACTCACGTTGCGAGAGGTAAGTTGAGCC
66 TGAGGTATTTTCAATTACTG-TTTGTC-AAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* **
94855269 TCGGGTCACACGCCGAGGTATTTTCAATTTCTGTTTTTTCAAAAAGATCAACTCACGTTGCGAGA
128 TCGGG--ACACGCTGAGGTATTTTCAATTT-TGTTTTTTCAAAAA-ATCAACTCATATTGCGAGA
94855334 GGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
189 GGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
* * * *
94855366 TTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* * *
94855431 TGAGGTATTTTCAATTAATGTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
66 TGAGGTATTTTCAATT-A-CTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * *
94855496 CGGGTCACATGTTGAGGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTCAAAAAAATCAACTCA
129 CGGG--ACACGCTGAGGTATTTTC--AAT-T--TTGT----TT---TTTC-AAAAAATCAACTCA
94855561 TATTGCGAGAGGTGAGTTGAGCCT
179 TATTGCGAGAGGTGAGTTGAGCCT
94855585 TAGCTCACGT
Statistics
Matches: 576, Mismatches: 56, Indels: 60
0.83 0.08 0.09
Matches are distributed among these distances:
219 35 0.06
220 24 0.04
221 5 0.01
222 2 0.00
223 121 0.21
224 48 0.08
225 14 0.02
226 168 0.29
227 86 0.15
228 25 0.04
229 3 0.01
230 2 0.00
231 1 0.00
234 2 0.00
237 35 0.06
238 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.32
Consensus pattern (220 bp):
TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTATTTTCAATTACTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
GGACACGCTGAGGTATTTTCAATTTTGTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCCTCAGGACACGCTGAGGTAA
Found at i:94869706 original size:17 final size:18
Alignment explanation
Indices: 94869681--94869724 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
94869671 AACCAAATTG
94869681 GGCGTGTGGGCC-ACACA
1 GGCGTGTGGGCCTACACA
*
94869698 GGTGTGTGGGCCTACACA
1 GGCGTGTGGGCCTACACA
94869716 GGCGTGTGG
1 GGCGTGTGG
94869725 ATTCTTGGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.14, C:0.23, G:0.45, T:0.18
Consensus pattern (18 bp):
GGCGTGTGGGCCTACACA
Found at i:94870218 original size:24 final size:24
Alignment explanation
Indices: 94870186--94870243 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
94870176 CCCACATGAA
*
94870186 GTGT-AGGGATGGTCGGAGATGGT
1 GTGTAAGGGATGGTCAGAGATGGT
94870209 GTGTAAGGGATGGTCAGAGATGGT
1 GTGTAAGGGATGGTCAGAGATGGT
*
94870233 GTGTAAAGGAT
1 GTGTAAGGGAT
94870244 AGGGGTAGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 4 0.12
24 28 0.88
ACGTcount: A:0.24, C:0.03, G:0.47, T:0.26
Consensus pattern (24 bp):
GTGTAAGGGATGGTCAGAGATGGT
Found at i:94874563 original size:18 final size:18
Alignment explanation
Indices: 94874526--94874570 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
94874516 CTCAGAATTT
* *
94874526 TGGGCCCACATGTCCTTG
1 TGGGCCCACATGCCCATG
*
94874544 TGGGCGCACATGCCCATG
1 TGGGCCCACATGCCCATG
94874562 T-GGCCCACA
1 TGGGCCCACA
94874571 CAGCCTGGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.16, C:0.36, G:0.29, T:0.20
Consensus pattern (18 bp):
TGGGCCCACATGCCCATG
Found at i:94876840 original size:27 final size:26
Alignment explanation
Indices: 94876804--94876941 Score: 106
Period size: 27 Copynumber: 5.2 Consensus size: 26
94876794 TGGAAATAAA
*
94876804 TATATGAAATGATTATATGAATTGGT
1 TATATGAAATGATTATATGAAATGGT
94876830 TATATGAAAATAGA-TATATGAAATGGT
1 TATATG-AAAT-GATTATATGAAATGGT
94876857 TATATGAAAAATGA-TATAT-ATAATGGT
1 TATATG--AAATGATTATATGA-AATGGT
* * *
94876884 TACATG-AATCAATTATATGAAAAAT-GA
1 TATATGAAAT-GATTATATG--AAATGGT
* * *
94876911 TATATGAAATGGTTATATGAATTAGT
1 TATATGAAATGATTATATGAAATGGT
94876937 TATAT
1 TATAT
94876942 ATAAACAGAT
Statistics
Matches: 92, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
24 3 0.03
25 4 0.04
26 18 0.20
27 53 0.58
28 13 0.14
29 1 0.01
ACGTcount: A:0.45, C:0.01, G:0.16, T:0.38
Consensus pattern (26 bp):
TATATGAAATGATTATATGAAATGGT
Done.