Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 290 of 325
Found at i:94876891 original size:40 final size:40
Alignment explanation
Indices: 94876847--94876957 Score: 122
Period size: 40 Copynumber: 2.8 Consensus size: 40
94876837 AAATAGATAT
*
94876847 ATGAAATGGTTATATGAAAAATGATATAT-ATAATGGTTAC
1 ATGAAATAGTTATATGAAAAATGATATATGA-AATGGTTAC
* *
94876887 ATG-AATCAATTATATGAAAAATGATATATGAAATGGTTAT
1 ATGAAAT-AGTTATATGAAAAATGATATATGAAATGGTTAC
*
94876927 ATGAATTAGTTATAT-ATAAACA-GATATATGA
1 ATGAAATAGTTATATGA-AAA-ATGATATATGA
94876958 TAACCGATTA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
39 4 0.07
40 53 0.87
41 4 0.07
ACGTcount: A:0.47, C:0.03, G:0.15, T:0.35
Consensus pattern (40 bp):
ATGAAATAGTTATATGAAAAATGATATATGAAATGGTTAC
Found at i:94876938 original size:13 final size:13
Alignment explanation
Indices: 94876790--94876990 Score: 93
Period size: 13 Copynumber: 14.8 Consensus size: 13
94876780 GATAAATATC
**
94876790 TATATGGAAATAAA
1 TATAT-GAAATAGT
94876804 TATATGAAAT-GAT
1 TATATGAAATAG-T
* *
94876817 TATATGAATTGGT
1 TATATGAAATAGT
*
94876830 TATATGAAAATAGA
1 TATATG-AAATAGT
*
94876844 TATATGAAATGGT
1 TATATGAAATAGT
* *
94876857 TATATGAAAAATGA
1 TATATGAAATA-GT
*
94876871 TATAT-ATAATGGT
1 TATATGA-AATAGT
* *
94876884 TACATG-AATCAAT
1 TATATGAAAT-AGT
* *
94876897 TATATGAAAAATGA
1 TATATGAAATA-GT
*
94876911 TATATGAAATGGT
1 TATATGAAATAGT
*
94876924 TATATGAATTAGT
1 TATATGAAATAGT
* * *
94876937 TATATATAAACAGA
1 TATAT-GAAATAGT
**
94876951 TATATGATAACCGAT
1 TATATGA-AATAG-T
*
94876966 TATATGGAAATAGA
1 TATAT-GAAATAGT
94876980 TATATGAAATA
1 TATATGAAATA
94876991 AAACATTGGA
Statistics
Matches: 138, Mismatches: 36, Indels: 27
0.69 0.18 0.13
Matches are distributed among these distances:
12 3 0.02
13 72 0.52
14 53 0.38
15 8 0.06
16 2 0.01
ACGTcount: A:0.47, C:0.02, G:0.15, T:0.35
Consensus pattern (13 bp):
TATATGAAATAGT
Found at i:94878957 original size:42 final size:41
Alignment explanation
Indices: 94878849--94878957 Score: 121
Period size: 44 Copynumber: 2.6 Consensus size: 41
94878839 TTTCAGTACG
* * *
94878849 TGATTTCGTGTAAGACCAC-GTCTGGGACGTTGGCATCAATT
1 TGATTTCGTGTAAGACC-CTGTCTCGGACATTGGCATCAATA
* *
94878890 TGATATTTACGCGTAAGACCATGTCTCGGACATTGGCATCATATA
1 TG--ATTT-CGTGTAAGACCCTGTCTCGGACATTGGCATCA-ATA
94878935 TGATTTCGTGTAAGACCCTGTCT
1 TGATTTCGTGTAAGACCCTGTCT
94878958 GGGATAGTGG
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
41 2 0.04
42 15 0.27
43 8 0.14
44 27 0.48
45 4 0.07
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCCTGTCTCGGACATTGGCATCAATA
Found at i:94878969 original size:42 final size:43
Alignment explanation
Indices: 94878849--94879012 Score: 137
Period size: 42 Copynumber: 3.9 Consensus size: 43
94878839 TTTCAGTACG
*
94878849 TGATTTCGTGTAAGACCAC-GTCTGGGA-CGTTGGCATCA-ATT
1 TGATTTCGTGTAAGACC-CTGTCTGGGATAGTTGGCATCATATT
* * * * *
94878890 TGATATTTACGCGTAAGACCATGTCTCGGACA-TTGGCATCATATA
1 TG--ATTT-CGTGTAAGACCCTGTCTGGGATAGTTGGCATCATATT
*
94878935 TGATTTCGTGTAAGACCCTGTCTGGGATAG-TGGCATTGATATT
1 TGATTTCGTGTAAGACCCTGTCTGGGATAGTTGGCA-TCATATT
* *
94878978 TGATTAC-AGTAAGA-CCTCGTCTGGGAT-GTTGGCAT
1 TGATTTCGTGTAAGACCCT-GTCTGGGATAGTTGGCAT
94879013 TGTACGAGCT
Statistics
Matches: 100, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
41 7 0.07
42 44 0.44
43 19 0.19
44 26 0.26
45 4 0.04
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.33
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCCTGTCTGGGATAGTTGGCATCATATT
Found at i:94881598 original size:20 final size:19
Alignment explanation
Indices: 94881560--94881601 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
94881550 TTTATTTTAC
94881560 TATAAATATTATGTATATA
1 TATAAATATTATGTATATA
94881579 TATAAATGATTTAT-TATATA
1 TATAAAT-A-TTATGTATATA
94881599 TAT
1 TAT
94881602 TAATTTTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.33
20 10 0.48
21 4 0.19
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (19 bp):
TATAAATATTATGTATATA
Found at i:94881679 original size:20 final size:22
Alignment explanation
Indices: 94881650--94881717 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 22
94881640 TAAGTTTTAT
94881650 TTATAT-ATTTTA-TA-ATATA
1 TTATATCATTTTACTATATATA
94881669 TTATATCATTTTACTATATATA
1 TTATATCATTTTACTATATATA
* * * *
94881691 TTAT-TCATTATATTATTTTTA
1 TTATATCATTTTACTATATATA
94881712 TTATAT
1 TTATAT
94881718 TTTATATTAC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
19 6 0.15
20 6 0.15
21 19 0.46
22 10 0.24
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (22 bp):
TTATATCATTTTACTATATATA
Found at i:94881714 original size:14 final size:14
Alignment explanation
Indices: 94881667--94881718 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
94881657 TTTTATAATA
*
94881667 TATTATATCA-TTT
1 TATTATATTATTTT
*
94881680 TACTATATATATTATT
1 TATTATAT-TATT-TT
*
94881696 CATTATATTATTTT
1 TATTATATTATTTT
94881710 TATTATATT
1 TATTATATT
94881719 TTATATTACT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
13 7 0.23
14 11 0.35
15 5 0.16
16 8 0.26
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.62
Consensus pattern (14 bp):
TATTATATTATTTT
Found at i:94881740 original size:33 final size:34
Alignment explanation
Indices: 94881687--94881750 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
94881677 TTTTACTATA
* *
94881687 TATATTATTCATTATATTATTTTTAT-TATATTT
1 TATATTATTCAGTATATTATTATTATGTATATTT
94881720 TATATTACTTCAGTAT-TTATTATTATGTATA
1 TATATTA-TTCAGTATATTATTATTATGTATA
94881751 AATTTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
33 16 0.59
34 11 0.41
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (34 bp):
TATATTATTCAGTATATTATTATTATGTATATTT
Found at i:94881879 original size:27 final size:29
Alignment explanation
Indices: 94881849--94881910 Score: 67
Period size: 27 Copynumber: 2.2 Consensus size: 29
94881839 ATTTTTTCAC
*
94881849 ATATTTAATATAG-TATTAT-TTATATAA-
1 ATATTTAATA-AGCTATTATATAATATAAT
* *
94881876 ATATATATTAAGCTATTATATAATATAAT
1 ATATTTAATAAGCTATTATATAATATAAT
94881905 ATATTT
1 ATATTT
94881911 TTATTTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 2 0.07
27 14 0.50
28 7 0.25
29 5 0.18
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (29 bp):
ATATTTAATAAGCTATTATATAATATAAT
Found at i:94883239 original size:43 final size:43
Alignment explanation
Indices: 94883178--94883337 Score: 218
Period size: 43 Copynumber: 3.8 Consensus size: 43
94883168 TTATTGAAAA
*
94883178 AAACGCCGCCAAAAGTCACGATTTTTAGCGGCGGTTGTGGGAG
1 AAACGCCGCTAAAAGTCACGATTTTTAGCGGCGGTTGTGGGAG
94883221 AAACGCCGCTAAAAGTCACGATTTTTAGCGGCGGTTGTGGGAG
1 AAACGCCGCTAAAAGTCACGATTTTTAGCGGCGGTTGTGGGAG
** * * * *
94883264 AAACGCCGCTAAAAGTCACG-GCTTTAGCGCCGTTTGT-AGAA
1 AAACGCCGCTAAAAGTCACGATTTTTAGCGGCGGTTGTGGGAG
*
94883305 AAAGCGCCGCTAAAAGTCGCGA-TTTTAGCGGCG
1 AAA-CGCCGCTAAAAGTCACGATTTTTAGCGGCG
94883338 CTTTTTTCTA
Statistics
Matches: 105, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
41 5 0.05
42 38 0.36
43 62 0.59
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAAAGTCACGATTTTTAGCGGCGGTTGTGGGAG
Found at i:94883322 original size:85 final size:85
Alignment explanation
Indices: 94883178--94883337 Score: 216
Period size: 85 Copynumber: 1.9 Consensus size: 85
94883168 TTATTGAAAA
** * * *
94883178 AAACGCCGCCAAAAGTCACGATTTTTAGCGGCGGTTGTGGGAGAAACGCCGCTAAAAGTCACGAT
1 AAACGCCGCCAAAAGTCACGAGCTTTAGCGCCGGTTGTGAGAAAAACGCCGCTAAAAGTCACGA-
94883243 TTTTAGCGGCGGTTGTGGGAG
65 TTTTAGCGGCGGTTGTGGGAG
* * *
94883264 AAACGCCGCTAAAAGTCACG-GCTTTAGCGCCGTTTGT-AGAAAAAGCGCCGCTAAAAGTCGCGA
1 AAACGCCGCCAAAAGTCACGAGCTTTAGCGCCGGTTGTGAGAAAAA-CGCCGCTAAAAGTCACGA
94883327 TTTTAGCGGCG
65 TTTTAGCGGCG
94883338 CTTTTTTCTA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
84 16 0.25
85 30 0.46
86 19 0.29
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (85 bp):
AAACGCCGCCAAAAGTCACGAGCTTTAGCGCCGGTTGTGAGAAAAACGCCGCTAAAAGTCACGAT
TTTAGCGGCGGTTGTGGGAG
Found at i:94883477 original size:31 final size:31
Alignment explanation
Indices: 94883412--94883494 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
94883402 CTTCCTGCGT
* **
94883412 TAAAATCCAACCAAATACAACAAATATATTA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
* * *
94883443 TAAAATGCAGCCAAAAACAACAAATTTAGCA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
*
94883474 TAAAAAATACAACCAAAAACA
1 T--AAAATCCAACCAAAAACA
94883495 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 26 0.62
33 16 0.38
ACGTcount: A:0.60, C:0.19, G:0.04, T:0.17
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAGCA
Found at i:94889347 original size:9 final size:9
Alignment explanation
Indices: 94889333--94889454 Score: 111
Period size: 9 Copynumber: 12.9 Consensus size: 9
94889323 ATGTATTAGT
94889333 TAAGTTATG
1 TAAGTTATG
94889342 TAAGTTGTTATG
1 TAA---GTTATG
94889354 TACA-TTATG
1 TA-AGTTATG
*
94889363 TGAGTTATG
1 TAAGTTATG
*
94889372 TAAATTATG
1 TAAGTTATG
94889381 TAAGTTATG
1 TAAGTTATG
*
94889390 TAAATTATG
1 TAAGTTATG
94889399 TAAGTTGTTATG
1 TAA---GTTATG
*
94889411 TAAATTATG
1 TAAGTTATG
*
94889420 TAAGTTATA
1 TAAGTTATG
*
94889429 TGAGTTATG
1 TAAGTTATG
94889438 TAAGTTATG
1 TAAGTTATG
*
94889447 TAATTTAT
1 TAAGTTAT
94889455 TGAAGTAATG
Statistics
Matches: 92, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
8 1 0.01
9 74 0.80
12 16 0.17
13 1 0.01
ACGTcount: A:0.34, C:0.01, G:0.19, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:94889398 original size:57 final size:57
Alignment explanation
Indices: 94889337--94889454 Score: 182
Period size: 57 Copynumber: 2.1 Consensus size: 57
94889327 ATTAGTTAAG
* * *
94889337 TTATGTAAGTTGTTATGTACATTATGTGAGTTATGTAAATTATGTAAGTTATGTAAA
1 TTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTAAA
* * *
94889394 TTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATGTAAT
1 TTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTAAA
94889451 TTAT
1 TTAT
94889455 TGAAGTAATG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.47
Consensus pattern (57 bp):
TTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTAAA
Found at i:94889410 original size:48 final size:48
Alignment explanation
Indices: 94889358--94889449 Score: 130
Period size: 48 Copynumber: 1.9 Consensus size: 48
94889348 GTTATGTACA
* * *
94889358 TTATGTGAGTTATGTAAATTATGTAAGTTATGTAAATTATGTAAGTTG
1 TTATGTAAATTATGTAAATTATATAAGTTATGTAAATTATGTAAGTTG
* * *
94889406 TTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATGTAA
1 TTATGTAAATTATGTAAATTATATAAGTTATGTAAATTATGTAA
94889450 TTTATTGAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.46
Consensus pattern (48 bp):
TTATGTAAATTATGTAAATTATATAAGTTATGTAAATTATGTAAGTTG
Found at i:94889460 original size:18 final size:18
Alignment explanation
Indices: 94889348--94889454 Score: 133
Period size: 18 Copynumber: 5.8 Consensus size: 18
94889338 TATGTAAGTT
* *
94889348 GTTATGTACATTATGTGA
1 GTTATGTAAATTATGTAA
94889366 GTTATGTAAATTATGTAA
1 GTTATGTAAATTATGTAA
94889384 GTTATGTAAATTATGTAA
1 GTTATGTAAATTATGTAA
94889402 GTTGTTATGTAAATTATGTAA
1 ---GTTATGTAAATTATGTAA
* * *
94889423 GTTATATGAGTTATGTAA
1 GTTATGTAAATTATGTAA
*
94889441 GTTATGTAATTTAT
1 GTTATGTAAATTAT
94889455 TGAAGTAATG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
18 60 0.77
21 18 0.23
ACGTcount: A:0.34, C:0.01, G:0.19, T:0.47
Consensus pattern (18 bp):
GTTATGTAAATTATGTAA
Found at i:94893082 original size:25 final size:25
Alignment explanation
Indices: 94893048--94893112 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
94893038 TGCGGAAGCG
* * *
94893048 GAGAGCGACGGTGAAGGGACGCAGAA
1 GAGA-CGACGGCGAAGAGACGCAAAA
94893074 GAGACGACGGCGAAGAGACGCAAAA
1 GAGACGACGGCGAAGAGACGCAAAA
94893099 GAGACGACGGCGAA
1 GAGACGACGGCGAA
94893113 CGACGATGAG
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
25 32 0.89
26 4 0.11
ACGTcount: A:0.38, C:0.18, G:0.42, T:0.02
Consensus pattern (25 bp):
GAGACGACGGCGAAGAGACGCAAAA
Found at i:94893668 original size:158 final size:157
Alignment explanation
Indices: 94893396--94893738 Score: 347
Period size: 158 Copynumber: 2.2 Consensus size: 157
94893386 CACTAATATT
* * *
94893396 TTTTGCGGCGTTTATTTAAAAAATGCCGCTAATCCCTATATACTCAACTAAAACGACGACGTGTA
1 TTTTGCGGCGTTTATCTAAAAAACGCCGCAAATCCCTATATACTCAACTAAAACGACGACGTGTA
* * * * *
94893461 CTATAAACTTGAATTATTTTGCGGCATTTTTGAAAGCGCCACTAATACTCGT-AT-ATACTAAAA
66 CCATAAACTTGAATTATGTTACGGCATTTTTAAAAACGCCACTAATACTC-TAATAAT-CTAAAA
*
94893524 CGGCGCCGTTTTCGTTAAACTAATCTGTA
129 CGACGCCGTTTTCGTTAAACTAATCTGTA
* * *
94893553 TTTTGTGGCGTTT-TCTATAAAAACGCCGCAAATCCCCTATATATTGAACTAAAACGACGACGCT
1 TTTTGCGGCGTTTATCTA-AAAAACGCCGCAAAT-CCCTATATACTCAACTAAAACGACGACG-T
* * * * * *
94893617 -T-CCAGTACACTTTACTTCTGTTACGGCGTTTTTAAAAACGCCACTAGTACTCTAATCAATCTA
63 GTACCA-TAAACTTGAATTATGTTACGGCATTTTTAAAAACGCCACTAATACTCTAAT-AATCTA
* * * *
94893680 AAACGACGCCGTTTTCTTTCAACT-ATACTATT
126 AAACGACGCCGTTTTCGTTAAACTAAT-CTGTA
* * *
94893712 TTTTACGGCGTTTTTTTAAAAAACGCC
1 TTTTGCGGCGTTTATCTAAAAAACGCC
94893739 ACTAATCTCT
Statistics
Matches: 152, Mismatches: 25, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
156 3 0.02
157 28 0.18
158 68 0.45
159 48 0.32
160 5 0.03
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (157 bp):
TTTTGCGGCGTTTATCTAAAAAACGCCGCAAATCCCTATATACTCAACTAAAACGACGACGTGTA
CCATAAACTTGAATTATGTTACGGCATTTTTAAAAACGCCACTAATACTCTAATAATCTAAAACG
ACGCCGTTTTCGTTAAACTAATCTGTA
Found at i:94894730 original size:14 final size:14
Alignment explanation
Indices: 94894710--94894753 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
94894700 TCCTACACCT
94894710 TAAACCCTAAACTA
1 TAAACCCTAAACTA
*
94894724 TATACCCTAAAC-A
1 TAAACCCTAAACTA
94894737 TAAACCCTAAACTA
1 TAAACCCTAAACTA
94894751 TAA
1 TAA
94894754 TGATAATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 12 0.44
14 15 0.56
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCCTAAACTA
Found at i:94895277 original size:41 final size:40
Alignment explanation
Indices: 94895213--94895304 Score: 96
Period size: 41 Copynumber: 2.3 Consensus size: 40
94895203 TTTCCCCAAT
* *
94895213 GCGCCGCTAATAGTCAAGCTATAGTGGCGTTTCTCATATAA
1 GCGCCGCTAATACTCAAGCTATAGCGGCGTTTC-CATATAA
* * *
94895254 GCGCCGCTAATTCTCAA-CATATAGCGGTGTTTCCTTATAA
1 GCGCCGCTAATACTCAAGC-TATAGCGGCGTTTCCATATAA
* *
94895294 GGGCCGATAAT
1 GCGCCGCTAAT
94895305 GCTCGTTTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
40 16 0.37
41 27 0.63
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (40 bp):
GCGCCGCTAATACTCAAGCTATAGCGGCGTTTCCATATAA
Found at i:94895370 original size:40 final size:40
Alignment explanation
Indices: 94895296--94895423 Score: 204
Period size: 40 Copynumber: 3.2 Consensus size: 40
94895286 CCTTATAAGG
* * * *
94895296 GCCGATAATGCTCGTTTTTTAGTGGCG-TTGTTGTTTAAGC
1 GCCGCTAATGCTC-TTTTTTAGTGGCGTTTTTTGTTAAAAC
94895336 GCCGCTAATGCTCTTTTTTAGTGGCGTTTTTTGTTAAAAC
1 GCCGCTAATGCTCTTTTTTAGTGGCGTTTTTTGTTAAAAC
94895376 GCCGCTAATGCTCTTTTTTAGTGGCGTTTTTTGTTAAAAC
1 GCCGCTAATGCTCTTTTTTAGTGGCGTTTTTTGTTAAAAC
94895416 GCCGCTAA
1 GCCGCTAA
94895424 AAGCGCCGCT
Statistics
Matches: 83, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
39 13 0.16
40 70 0.84
ACGTcount: A:0.17, C:0.18, G:0.23, T:0.42
Consensus pattern (40 bp):
GCCGCTAATGCTCTTTTTTAGTGGCGTTTTTTGTTAAAAC
Found at i:94906246 original size:44 final size:44
Alignment explanation
Indices: 94906183--94907169 Score: 1042
Period size: 44 Copynumber: 22.6 Consensus size: 44
94906173 ATAGATCACC
* * * * *
94906183 GATAGCAGATTTGACGTCTCTATATTGTCAGAAAGTAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* *
94906227 GATAACAGGTTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * ** * * *
94906271 AATAACAAATTTGGCGTCTCTATATTAACAAAGAGCA-AAC--C
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * *
94906312 GATAGCAGATTTGGCGTCTCTATATTGTCAGAAAGTAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* *
94906356 GATAACAGGTTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * ** * * *
94906400 AATAACAAATTTGGCGTCTCTATATTAACAAAGAGCA-AAC--C
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * *
94906441 GATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAAATCGAT
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * *
94906485 GATAACAGGTTTGGCGTCTCTATATTGACAGAGAGCAGATTGGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGA-TCGAA
* *
94906530 -ATAACAAATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
*
94906573 GATGACAGATTTGGCGTCTCTGTATTGAT-AGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTG-TCAGAGAGCAGATCGAA
* * *
94906617 GATGACAGATTTGGCATCTCTGTATTGTCAGAGAGTAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * * *
94906661 GATAGCCGATTTGACATCTCTGTCTTGTCAGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
** * *
94906705 GATAGTAGATTTGGCGTCTCTGTATTGTTAGAGAGCAGATCAAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* *
94906749 GATAACAGATTTGGCATTTCTGTATTGGT-AGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATT-GTCAGAGAGCAGATCGAA
* * * * *
94906793 GATAGCAGATTTGGCATTTCTGTATTGACAGAGAGCAGATCAAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * *
94906837 GATAGCATATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * * *
94906881 GATAGCAGATTTGGTGTCTCTGTATTGACAAAAAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * *
94906925 GATAACAGATTTGTCGTCTCTGTATTGACAAAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* ** * *
94906969 GATAACATATTTGTTGTC-CTGTATTGACAAAGAGCAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * * *
94907012 GATAACAGATTTAGCGTTTCTGTATTGACAGAGGGCAGATTGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * * ** *
94907056 GATGACAGGTTTGGCATCTCTGTATTAACAGAGAACAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
* * *
94907100 GATAACATATTTGGTGTCTCTGTATTGACAGAG-GACAGATCGAA
1 GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAG-CAGATCGAA
* * *
94907144 GATGACAGATTTGGCTTCTCCGTATT
1 GATAACAGATTTGGCGTCTCTGTATT
94907170 AGGCAAGGAG
Statistics
Matches: 797, Mismatches: 132, Indels: 28
0.83 0.14 0.03
Matches are distributed among these distances:
41 59 0.07
42 4 0.01
43 48 0.06
44 681 0.85
45 5 0.01
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (44 bp):
GATAACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
Found at i:94908703 original size:20 final size:19
Alignment explanation
Indices: 94908665--94908707 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
94908655 TTTATTTTAC
94908665 TATAAATATTATGTATATA
1 TATAAATATTATGTATATA
94908684 TATAAATGATTTAT-TATATA
1 TATAAAT-A-TTATGTATATA
94908704 TATA
1 TATA
94908708 TTATTTTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.32
20 11 0.50
21 4 0.18
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (19 bp):
TATAAATATTATGTATATA
Found at i:94908786 original size:20 final size:21
Alignment explanation
Indices: 94908757--94908801 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
94908747 TAAGTTTTAT
94908757 TTATATATTTTA-TA-ATATA
1 TTATATATTTTACTATATATA
94908776 TTATATCATTTTACTATATATA
1 TTATAT-ATTTTACTATATATA
94908798 TTAT
1 TTAT
94908802 TCACTATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.26
20 6 0.26
21 2 0.09
22 9 0.39
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (21 bp):
TTATATATTTTACTATATATA
Found at i:94908847 original size:33 final size:35
Alignment explanation
Indices: 94908794--94908863 Score: 92
Period size: 33 Copynumber: 2.1 Consensus size: 35
94908784 TTTTACTATA
* *
94908794 TATATTATTCACTATATTATTTTTAT-TAT-ATTT
1 TATATTATTCAATATATTATTATTATGTATAATTT
94908827 TATATTACTTCAATAT-TTATTATTATGTATAATTT
1 TATATTA-TTCAATATATTATTATTATGTATAATTT
94908862 TA
1 TA
94908864 AAAATTTGCA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
33 16 0.50
34 10 0.31
35 6 0.19
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.60
Consensus pattern (35 bp):
TATATTATTCAATATATTATTATTATGTATAATTT
Found at i:94916651 original size:14 final size:15
Alignment explanation
Indices: 94916632--94916662 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
94916622 TATAATTTTC
94916632 TTAAAATATTAT-TT
1 TTAAAATATTATGTT
94916646 TTAAAATATTATGTT
1 TTAAAATATTATGTT
94916661 TT
1 TT
94916663 TAATATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
TTAAAATATTATGTT
Found at i:94919075 original size:22 final size:22
Alignment explanation
Indices: 94919049--94919092 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
94919039 GAAAATGACC
*
94919049 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTCATTAT
*
94919071 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
94919093 GTTAATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:94921694 original size:40 final size:40
Alignment explanation
Indices: 94921629--94921814 Score: 219
Period size: 40 Copynumber: 4.7 Consensus size: 40
94921619 TAGAGCATTC
** * **
94921629 TTTCAATAGATTCAGAAGGTCTGGCTTGAAAATGCATACG
1 TTTCAATAGATTCACTAGGTATGGCTTGAAAGCGCATACG
* * * * * *
94921669 TTTTAGTAGATTCATTAGGCATGGCTCGAAAGCGCATATG
1 TTTCAATAGATTCACTAGGTATGGCTTGAAAGCGCATACG
* *
94921709 TTTCAATAGATTCACTAGGTATGGCTTGAAAGTGCATATG
1 TTTCAATAGATTCACTAGGTATGGCTTGAAAGCGCATACG
* *
94921749 TTTCAGTAGATTCACTAGGTATGGCTTGAAAGCACATACG
1 TTTCAATAGATTCACTAGGTATGGCTTGAAAGCGCATACG
* *
94921789 TTTCAATAGATTCACTAAGTTTGGCT
1 TTTCAATAGATTCACTAGGTATGGCT
94921815 CGTCTAAGCA
Statistics
Matches: 123, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 123 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (40 bp):
TTTCAATAGATTCACTAGGTATGGCTTGAAAGCGCATACG
Found at i:94921734 original size:80 final size:80
Alignment explanation
Indices: 94921629--94921814 Score: 255
Period size: 80 Copynumber: 2.3 Consensus size: 80
94921619 TAGAGCATTC
** * * *
94921629 TTTCAATAGATTCAGAAGGTCTGGCTTGAAAATGCATACGTTTTAGTAGATTCATTAGGCATGGC
1 TTTCAATAGATTCACTAGGTATGGCTTGAAAATGCATACGTTTCAGTAGATTCACTAGGCATGGC
* *
94921694 TCGAAAGCGCATATG
66 TCGAAAGCACATACG
* * *
94921709 TTTCAATAGATTCACTAGGTATGGCTTGAAAGTGCATATGTTTCAGTAGATTCACTAGGTATGGC
1 TTTCAATAGATTCACTAGGTATGGCTTGAAAATGCATACGTTTCAGTAGATTCACTAGGCATGGC
*
94921774 TTGAAAGCACATACG
66 TCGAAAGCACATACG
* *
94921789 TTTCAATAGATTCACTAAGTTTGGCT
1 TTTCAATAGATTCACTAGGTATGGCT
94921815 CGTCTAAGCA
Statistics
Matches: 93, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 93 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (80 bp):
TTTCAATAGATTCACTAGGTATGGCTTGAAAATGCATACGTTTCAGTAGATTCACTAGGCATGGC
TCGAAAGCACATACG
Found at i:94923192 original size:25 final size:27
Alignment explanation
Indices: 94923155--94923207 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
94923145 TCAAACATGC
94923155 ATTTAGGTCAATTAAAC-CCTAGGGGT
1 ATTTAGGTCAATTAAACTCCTAGGGGT
* * *
94923181 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTAAACTCCTAGGGGT
94923207 A
1 A
94923208 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (27 bp):
ATTTAGGTCAATTAAACTCCTAGGGGT
Found at i:94924682 original size:26 final size:26
Alignment explanation
Indices: 94924646--94924729 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
94924636 CATGAAATTC
94924646 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
94924672 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
94924698 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
94924724 TTATCA
1 TTATCA
94924730 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:94928203 original size:27 final size:27
Alignment explanation
Indices: 94928138--94928195 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
94928128 ACAATCATAC
94928138 ATCACATAGGGGCATAACAGTCATTTT
1 ATCACATAGGGGCATAACAGTCATTTT
94928165 ATCACATAGGGGCATAACAGTCATTTT
1 ATCACATAGGGGCATAACAGTCATTTT
94928192 ATCA
1 ATCA
94928196 ATTGGGGGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.29
Consensus pattern (27 bp):
ATCACATAGGGGCATAACAGTCATTTT
Found at i:94929888 original size:37 final size:37
Alignment explanation
Indices: 94929811--94929908 Score: 117
Period size: 37 Copynumber: 2.6 Consensus size: 37
94929801 TTTAACCTTC
* * *
94929811 TTTTTTATTTAAACCTTAAACAAAGTCATCTAATCTT
1 TTTTTTATTTAAACCCTAAACAAAGCCATCTAATCCT
* * *
94929848 TTTTTTGTTTAAACCCTAAACAAA-CCTTTTAATACCT
1 TTTTTTATTTAAACCCTAAACAAAGCCATCTAAT-CCT
*
94929885 TTTTTTATTCAAACCCTAAACAAA
1 TTTTTTATTTAAACCCTAAACAAA
94929909 ATCCTCTTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
36 6 0.12
37 46 0.88
ACGTcount: A:0.36, C:0.19, G:0.02, T:0.43
Consensus pattern (37 bp):
TTTTTTATTTAAACCCTAAACAAAGCCATCTAATCCT
Found at i:94931901 original size:44 final size:43
Alignment explanation
Indices: 94931838--94931965 Score: 184
Period size: 44 Copynumber: 2.9 Consensus size: 43
94931828 GGCACTCTCT
* *
94931838 TTCTCTCTTTAACCTAACTTAATATTTGTCATTTATGTGTGTCG
1 TTCTCTCTTTAACCCAACTTAA-ATGTGTCATTTATGTGTGTCG
* * *
94931882 TTCTCTCTTTAACCCAACTTAAAAGTGCCATTTATGTGTGTCT
1 TTCTCTCTTTAACCCAACTTAAATGTGTCATTTATGTGTGTCG
*
94931925 TTCTCTCTTTAATCCAACTTAAAATGTGTCATTTATGTGTG
1 TTCTCTCTTTAACCCAACTT-AAATGTGTCATTTATGTGTG
94931966 CTTACATGGC
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
43 36 0.48
44 39 0.52
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.46
Consensus pattern (43 bp):
TTCTCTCTTTAACCCAACTTAAATGTGTCATTTATGTGTGTCG
Found at i:94931929 original size:43 final size:43
Alignment explanation
Indices: 94931835--94931965 Score: 190
Period size: 43 Copynumber: 3.0 Consensus size: 43
94931825 AATGGCACTC
* **
94931835 TCTTTCTCTCTTTAACCTAACTTAATATTTGTCATTTATGTGTG
1 TCTTTCTCTCTTTAACCCAACTTAA-AAGTGTCATTTATGTGTG
* *
94931879 TCGTTCTCTCTTTAACCCAACTTAAAAGTGCCATTTATGTGTG
1 TCTTTCTCTCTTTAACCCAACTTAAAAGTGTCATTTATGTGTG
*
94931922 TCTTTCTCTCTTTAATCCAACTTAAAATGTGTCATTTATGTGTG
1 TCTTTCTCTCTTTAACCCAACTTAAAA-GTGTCATTTATGTGTG
94931966 CTTACATGGC
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
43 40 0.51
44 38 0.49
ACGTcount: A:0.22, C:0.20, G:0.11, T:0.47
Consensus pattern (43 bp):
TCTTTCTCTCTTTAACCCAACTTAAAAGTGTCATTTATGTGTG
Found at i:94934835 original size:8 final size:8
Alignment explanation
Indices: 94934803--94935066 Score: 71
Period size: 7 Copynumber: 34.1 Consensus size: 8
94934793 AACTTAAATG
94934803 ATAATAAT
1 ATAATAAT
94934811 AT-ATAGAT
1 ATAATA-AT
94934819 A-AA-AAT
1 ATAATAAT
*
94934825 ATAATAGT
1 ATAATAAT
*
94934833 ATAAAAAAT
1 AT-AATAAT
94934842 GACATAATAAT
1 -A--TAATAAT
94934853 ATAA-AAT
1 ATAATAAT
*
94934860 AATTATAAT
1 -ATAATAAT
94934869 AT-ATAAT
1 ATAATAAT
94934876 ATGAA-AAT
1 AT-AATAAT
94934884 AT-AT-AT
1 ATAATAAT
*
94934890 GTAA-AA-
1 ATAATAAT
*
94934896 ATAAT-AC
1 ATAATAAT
94934903 ATAATATAT
1 ATAATA-AT
94934912 ATAAATAAT
1 AT-AATAAT
94934921 -TAATAAT
1 ATAATAAT
94934928 AT-ATAAT
1 ATAATAAT
*
94934935 ACAAGTAA-
1 ATAA-TAAT
94934943 A-AAT-AT
1 ATAATAAT
94934949 AATAATAAT
1 -ATAATAAT
94934958 AT-ATAA-
1 ATAATAAT
*
94934964 ATAATGAT
1 ATAATAAT
*
94934972 GTAA-AAT
1 ATAATAAT
94934979 AATAATAATTT
1 -ATAATAA--T
*
94934990 GTGAA-AA-
1 AT-AATAAT
94934997 ATAAT-AT
1 ATAATAAT
94935004 ATAATAA-
1 ATAATAAT
94935011 ATAATAAT
1 ATAATAAT
94935019 A-ACATAA-
1 ATA-ATAAT
94935026 ATAAT-AT
1 ATAATAAT
94935033 ATAAAGTAAT
1 AT-AA-TAAT
94935043 -TATATAAT
1 ATA-ATAAT
94935051 AT-ATAAT
1 ATAATAAT
*
94935058 ATAAAAAT
1 ATAATAAT
94935066 A
1 A
94935067 AGGTTAAAAA
Statistics
Matches: 193, Mismatches: 16, Indels: 94
0.64 0.05 0.31
Matches are distributed among these distances:
5 1 0.01
6 18 0.09
7 73 0.38
8 57 0.30
9 24 0.12
10 11 0.06
11 8 0.04
12 1 0.01
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (8 bp):
ATAATAAT
Found at i:94934869 original size:58 final size:58
Alignment explanation
Indices: 94934804--94935079 Score: 184
Period size: 59 Copynumber: 4.6 Consensus size: 58
94934794 ACTTAAATGA
94934804 TAATAATATATAGATA-AAAATATA-ATAGTATAAAA-AATGACATAATA-ATATAAAATAAT
1 TAATAATATATA-ATAGAAAATATATAT-GTA-AAAATAAT-ACATAATATATAT-AAATAAT
94934863 T-ATAATATATAATATGAAAATATATATGTAAAAATAATACATAATATATATAAATAAT
1 TAATAATATATAATA-GAAAATATATATGTAAAAATAATACATAATATATATAAATAAT
* * * *
94934921 TAATAATATATAATACAAGTAAAA-ATATA-ATAATAATATATAAATAATGATGTA-AAATAA-
1 TAATAATATATAAT---AG-AAAATATATATGTAAAAATA-ATACATAAT-ATATATAAATAAT
* * *
94934981 TAATAATTTGTGAA-A-AATAATATATA-ATAAATAATAATAACATAAATAATATATAAAGTAAT
1 TAATAATATAT-AATAGAA-AATATATATGTAAA-AATAAT-ACAT-AAT-ATATATAAA-TAAT
* *
94935043 TATATAATATATAATATAAAA-ATA-AGGTTAAAAATAA
1 TA-ATAATATATAATAGAAAATATATATG-TAAAAATAA
94935080 AAAAAAATAA
Statistics
Matches: 178, Mismatches: 13, Indels: 49
0.74 0.05 0.20
Matches are distributed among these distances:
55 2 0.01
56 2 0.01
57 15 0.08
58 37 0.21
59 38 0.21
60 21 0.12
61 26 0.15
62 21 0.12
63 14 0.08
64 2 0.01
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (58 bp):
TAATAATATATAATAGAAAATATATATGTAAAAATAATACATAATATATATAAATAAT
Found at i:94934917 original size:20 final size:19
Alignment explanation
Indices: 94934797--94935058 Score: 103
Period size: 20 Copynumber: 13.6 Consensus size: 19
94934787 AGTTAAAACT
*
94934797 TAAATGATAATAATATATAGA
1 TAAATAATAATAATATAT--A
94934818 TAAA-AAT-ATAATAGTATA
1 TAAATAATAATAATA-TATA
94934836 -AAA-AATGACATAATA-ATA
1 TAAATAAT-A-ATAATATATA
*
94934854 TAAAATAATTATAATATATA
1 T-AAATAATAATAATATATA
* *
94934874 -ATATGAA-AATATATATGTA
1 TAAAT-AATAATA-ATATATA
*
94934893 AAAATAATACATAATATATA
1 TAAATAATA-ATAATATATA
94934913 TAAATAATTAATAATATATAA
1 TAAATAA-TAATAATATAT-A
*
94934934 TACAAGTAAAAAT-ATA-ATA
1 TA-AA-TAATAATAATATATA
*
94934953 -ATAATATATAAATAATGATGTA
1 TA-AATA-AT-AATAAT-ATATA
*
94934975 -AAATAATAATAAT-T-TG
1 TAAATAATAATAATATATA
94934991 TGAAA-AATAAT-ATATA-A
1 T-AAATAATAATAATATATA
* *
94935008 TAAATAATAATAACATAAA
1 TAAATAATAATAATATATA
94935027 T-AATATATAAAGTAAT-TATA
1 TAAATA-AT-AA-TAATATATA
94935047 T-AATATATAATA
1 TAAATA-ATAATA
94935059 TAAAAATAAG
Statistics
Matches: 192, Mismatches: 17, Indels: 67
0.70 0.06 0.24
Matches are distributed among these distances:
16 6 0.03
17 23 0.12
18 27 0.14
19 38 0.20
20 61 0.32
21 26 0.14
22 8 0.04
23 3 0.02
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.34
Consensus pattern (19 bp):
TAAATAATAATAATATATA
Found at i:94934918 original size:17 final size:17
Alignment explanation
Indices: 94934904--94934962 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
94934894 AAATAATACA
*
94934904 TAATATATATAAATAAT
1 TAATATATATAAATAAG
*
94934921 TAATAATATATAATACAAG
1 TAAT-ATATATAA-ATAAG
*
94934940 TAA-AAATAT-AATAA-
1 TAATATATATAAATAAG
94934954 TAATATATA
1 TAATATATA
94934963 AATAATGATG
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
14 3 0.09
15 7 0.21
16 1 0.03
17 9 0.26
18 8 0.24
19 6 0.18
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (17 bp):
TAATATATATAAATAAG
Found at i:94935032 original size:27 final size:27
Alignment explanation
Indices: 94934805--94935067 Score: 92
Period size: 27 Copynumber: 9.6 Consensus size: 27
94934795 CTTAAATGAT
* *
94934805 AATAATAT-ATAGATAAAAATATAATA
1 AATAATATAATAAATAATAATATAATA
* * *
94934831 GTATAA-AAAATGACATAATAATAT-A-A
1 -AATAATATAAT-AAATAATAATATAATA
* *
94934857 AATAATTATAATATATAAT-ATGAAAATA
1 AATAA-TATAATAAATAATAAT-ATAATA
* *
94934885 TAT-ATGTAA-AAATAATACATA-ATATA
1 AATAATATAATAAATAATA-ATATA-ATA
* *
94934911 TATAA-ATAATTAATAAT-ATATAATA
1 AATAATATAATAAATAATAATATAATA
94934936 CAAGTAA-A-AATATAATAATAATAT-ATA
1 -AA-TAATATAATA-AATAATAATATAATA
* *
94934963 AATAATGATGTAAAATAATAATAATTTGTGAA-A
1 AATAAT-A--TAATA-AATAATAA--TAT-AATA
94934996 AATAATATATAATAAATAATAATA-ACATA
1 AAT-A-ATATAATAAATAATAATATA-ATA
*
94935025 AATAATAT-ATAAAGTAATTATATAATA
1 AATAATATAATAAA-TAATAATATAATA
*
94935052 TATAATATAA-AAATAA
1 AATAATATAATAAATAA
94935068 GGTTAAAAAT
Statistics
Matches: 182, Mismatches: 21, Indels: 67
0.67 0.08 0.25
Matches are distributed among these distances:
25 22 0.12
26 38 0.21
27 61 0.34
28 21 0.12
29 5 0.03
30 12 0.07
31 8 0.04
32 6 0.03
33 4 0.02
34 3 0.02
35 2 0.01
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (27 bp):
AATAATATAATAAATAATAATATAATA
Found at i:94935340 original size:30 final size:31
Alignment explanation
Indices: 94935300--94935360 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
94935290 ATAGCTATTG
*
94935300 TAGGGACTAAATCA-AAACTACAACAAAATAT
1 TAGGGACTAAATCATAAA-TAAAACAAAATAT
94935331 TAGGG-CTAAATCATAAATAAAACAAAATAT
1 TAGGGACTAAATCATAAATAAAACAAAATAT
94935361 AATTGTAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 20 0.71
31 8 0.29
ACGTcount: A:0.56, C:0.13, G:0.10, T:0.21
Consensus pattern (31 bp):
TAGGGACTAAATCATAAATAAAACAAAATAT
Found at i:94936526 original size:12 final size:13
Alignment explanation
Indices: 94936507--94936537 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
94936497 AAATAAACAA
94936507 TCATTTATTTATT
1 TCATTTATTTATT
94936520 T-ATTTATTTATT
1 TCATTTATTTATT
94936532 TCATTT
1 TCATTT
94936538 GGTTTTGAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (13 bp):
TCATTTATTTATT
Found at i:94939417 original size:32 final size:32
Alignment explanation
Indices: 94939365--94939445 Score: 110
Period size: 32 Copynumber: 2.5 Consensus size: 32
94939355 TGAAATTAGT
* *
94939365 TTGTTAGATTTTAAAATTATTATGTTTTAAAG-
1 TTGTTAGATATTGAAATTATTATGTTTT-AAGC
*
94939397 TTGTTAGATATTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTGAAATTATTATGTTTTAAGC
*
94939429 TTGTTGGATATTGAAAT
1 TTGTTAGATATTGAAAT
94939446 GATTGATAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
31 3 0.07
32 40 0.93
ACGTcount: A:0.31, C:0.01, G:0.16, T:0.52
Consensus pattern (32 bp):
TTGTTAGATATTGAAATTATTATGTTTTAAGC
Found at i:94944590 original size:5 final size:5
Alignment explanation
Indices: 94944580--94944631 Score: 52
Period size: 5 Copynumber: 10.0 Consensus size: 5
94944570 TAAGAAGATA
* *
94944580 TTATT TTATT TTATT TT-TGT TTTTAT TTATT TTTTAT TTATT TTATT
1 TTATT TTATT TTATT TTAT-T TTAT-T TTATT TTAT-T TTATT TTATT
94944627 TTATT
1 TTATT
94944632 AAATTAGTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
4 1 0.03
5 30 0.75
6 9 0.22
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:94944602 original size:11 final size:10
Alignment explanation
Indices: 94944583--94944631 Score: 53
Period size: 11 Copynumber: 4.7 Consensus size: 10
94944573 GAAGATATTA
94944583 TTTTATTTTAT
1 TTTTATTTT-T
*
94944594 TTTTGTTTTT
1 TTTTATTTTT
*
94944604 ATTTATTTTT
1 TTTTATTTTT
*
94944614 TATTTATTTTA
1 T-TTTATTTTT
94944625 TTTTATT
1 TTTTATT
94944632 AAATTAGTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
10 15 0.47
11 17 0.53
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.82
Consensus pattern (10 bp):
TTTTATTTTT
Found at i:94944608 original size:16 final size:16
Alignment explanation
Indices: 94944583--94944628 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
94944573 GAAGATATTA
94944583 TTTTATTTTATTTTTGT
1 TTTTATTTTATTTTT-T
94944600 TTTTA-TTTATTTTTT
1 TTTTATTTTATTTTTT
*
94944615 ATTTATTTTATTTT
1 TTTTATTTTATTTT
94944629 ATTAAATTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 5 0.19
16 17 0.63
17 5 0.19
ACGTcount: A:0.15, C:0.00, G:0.02, T:0.83
Consensus pattern (16 bp):
TTTTATTTTATTTTTT
Found at i:94944757 original size:36 final size:36
Alignment explanation
Indices: 94944715--94944788 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
94944705 TACTCTTGTA
94944715 TTCCTACTTCAATTTGGAATTGGATTATTCTCTCTT
1 TTCCTACTTCAATTTGGAATTGGATTATTCTCTCTT
94944751 TTCCTACTTCAATTTGGAATTGGATTATTCTCTCTT
1 TTCCTACTTCAATTTGGAATTGGATTATTCTCTCTT
94944787 TT
1 TT
94944789 AGAAGATATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.11, T:0.51
Consensus pattern (36 bp):
TTCCTACTTCAATTTGGAATTGGATTATTCTCTCTT
Found at i:94944811 original size:9 final size:9
Alignment explanation
Indices: 94944797--94944834 Score: 69
Period size: 9 Copynumber: 4.3 Consensus size: 9
94944787 TTAGAAGATA
94944797 TTTTTTTAT
1 TTTTTTTAT
94944806 TTTTTTTA-
1 TTTTTTTAT
94944814 TTTTTTTAT
1 TTTTTTTAT
94944823 TTTTTTTAT
1 TTTTTTTAT
94944832 TTT
1 TTT
94944835 ATTAAATTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.29
9 20 0.71
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:94944817 original size:17 final size:17
Alignment explanation
Indices: 94944795--94944834 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
94944785 TTTTAGAAGA
94944795 TATTTTTTTATTTTTTT
1 TATTTTTTTATTTTTTT
94944812 TATTTTTTTATTTTTTT
1 TATTTTTTTATTTTTTT
94944829 TATTTT
1 TATTTT
94944835 ATTAAATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (17 bp):
TATTTTTTTATTTTTTT
Found at i:94944963 original size:206 final size:205
Alignment explanation
Indices: 94944593--94944977 Score: 700
Period size: 206 Copynumber: 1.9 Consensus size: 205
94944583 TTTTATTTTA
*
94944593 TTTTTGTTTTTATTTATTTTTTATTTATTTTATTTTATTAAATTAGTTAGGCTATTTTTAGTAAA
1 TTTTTATTTTTATTTATTTTTTATTTATTTTATTTTATTAAATTAGTTAGGCTATTTTTAGTAAA
**
94944658 CCCCATGTATATAAATAGAGGTATTTTGTTCTTTGAAAAGGGTCAATTACTCTTGTATTCCTACT
66 CCCCACCTATATAAATAGAGGTATTTTGTTCTTTGAAAAGGGTCAATTACTCTTGTATTCCTACT
94944723 TCAATTTGGAATTGGATTATTCTCTCTTTTCCTACTTCAATTTGGAATTGGATTATTCTCTCTTT
131 TCAATTTGGAATTGGATTATTCTCTCTTTTCCTACTTCAA-TTGGAATTGGATTATTCTCTCTTT
94944788 TAGAAGATATT
195 TAGAAGATATT
*
94944799 TTTTTATTTTT-TTTATTTTTTTATTTTTTTTATTTTATTAAATTAGTTAGGCTATTTTTAGTAA
1 TTTTTATTTTTATTTA-TTTTTTATTTATTTTATTTTATTAAATTAGTTAGGCTATTTTTAGTAA
94944863 ACCCCACCTATATAAATAGAGGTATTTTGTTCTTTGAAAAGGGTCAATTACTCTTGTATTCCTAC
65 ACCCCACCTATATAAATAGAGGTATTTTGTTCTTTGAAAAGGGTCAATTACTCTTGTATTCCTAC
*
94944928 TTCAATTTGGAATTGGATTATTCTCTCTTTTCCTACTTCCATTGGAATTG
130 TTCAATTTGGAATTGGATTATTCTCTCTTTTCCTACTTCAATTGGAATTG
94944978 AATTTTTTTT
Statistics
Matches: 173, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
205 13 0.08
206 160 0.92
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.52
Consensus pattern (205 bp):
TTTTTATTTTTATTTATTTTTTATTTATTTTATTTTATTAAATTAGTTAGGCTATTTTTAGTAAA
CCCCACCTATATAAATAGAGGTATTTTGTTCTTTGAAAAGGGTCAATTACTCTTGTATTCCTACT
TCAATTTGGAATTGGATTATTCTCTCTTTTCCTACTTCAATTGGAATTGGATTATTCTCTCTTTT
AGAAGATATT
Found at i:94945427 original size:3 final size:3
Alignment explanation
Indices: 94945399--94945517 Score: 53
Period size: 3 Copynumber: 40.3 Consensus size: 3
94945389 CTGTTACTAC
* * * * * * *
94945399 TAT TTT TAT TAG TAT TGT TCT TAT TAT TAT TAT TAC CAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * *
94945447 T-T TAT CAC TAC TGT CAT TAT TAT T-C TAG TAT TAT TAG TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
94945493 TAC TAC TAT TTT TAT TAT CAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
94945518 TTTTTTAAAA
Statistics
Matches: 84, Mismatches: 30, Indels: 4
0.71 0.25 0.03
Matches are distributed among these distances:
2 3 0.04
3 81 0.96
ACGTcount: A:0.28, C:0.10, G:0.04, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:94945666 original size:15 final size:14
Alignment explanation
Indices: 94945657--94945695 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
94945647 TTTATTCTTG
94945657 TCTTCATTATTATTA
1 TCTT-ATTATTATTA
94945672 TCTTATTATATATTA
1 TCTTATTAT-TATTA
*
94945687 TCCTATTAT
1 TCTTATTAT
94945696 GTACCTATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.28, C:0.13, G:0.00, T:0.59
Consensus pattern (14 bp):
TCTTATTATTATTA
Found at i:94945670 original size:23 final size:20
Alignment explanation
Indices: 94945607--94945652 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
94945597 TAGAATTTCC
94945607 TTTA-TTATTTCATTAATTAT
1 TTTATTTATTTCATT-ATTAT
*
94945627 TTTATTTATTTCATTTTTAT
1 TTTATTTATTTCATTATTAT
94945647 TTTATT
1 TTTATT
94945653 CTTGTCTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTATTTATTTCATTATTAT
Found at i:94947486 original size:19 final size:20
Alignment explanation
Indices: 94947443--94947487 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
94947433 CGTCTCCTTT
*
94947443 TGCATT-CATTTCATGCATC
1 TGCATTGCATTTCATGCATA
*
94947462 TACATTGCATTTCAT-CATA
1 TGCATTGCATTTCATGCATA
94947481 TGCATTG
1 TGCATTG
94947488 AATGTCACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.42
Consensus pattern (20 bp):
TGCATTGCATTTCATGCATA
Found at i:94947649 original size:24 final size:24
Alignment explanation
Indices: 94947622--94947673 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
94947612 GAAAGGTCGA
*
94947622 AACAGATGCAA-AAGGAAATACAAG
1 AACAGATGCAAGAA-CAAATACAAG
*
94947646 AACAGATGCAAGCACAAATACAAG
1 AACAGATGCAAGAACAAATACAAG
94947670 AACA
1 AACA
94947674 ACTGGCTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.58, C:0.17, G:0.17, T:0.08
Consensus pattern (24 bp):
AACAGATGCAAGAACAAATACAAG
Found at i:94949425 original size:19 final size:19
Alignment explanation
Indices: 94949401--94949437 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
94949391 TTTTGAGAAA
94949401 ATATTCTTTTATTCTTTAT
1 ATATTCTTTTATTCTTTAT
*
94949420 ATATTCTTTTGTTCTTTA
1 ATATTCTTTTATTCTTTA
94949438 GACTCTCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.19, C:0.11, G:0.03, T:0.68
Consensus pattern (19 bp):
ATATTCTTTTATTCTTTAT
Found at i:94952437 original size:134 final size:134
Alignment explanation
Indices: 94952293--94952606 Score: 468
Period size: 134 Copynumber: 2.3 Consensus size: 134
94952283 AGGAAACAAA
* * *
94952293 CTGAATATTGTAGATTTTATCTCCCTGAGATAGAAGTGGAGCAGATCAAAGACGACAAATCTTAT
1 CTGAAGATTGTAGATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCAAAGACGACAAATCTTAT
* * *
94952358 CTTCCCAAAGTAGTAGGGGAGCAGATTTAAGTCACCAGCCTTATCTCCTTGAGGTAGCAAAGGAG
66 CTTCCCAAAGTAGCAGGGGAGCAGATTTAAGCCACAAGCCTTATCTCCTTGAGGTAGCAAAGGAG
94952423 TAGG
131 TAGG
* *
94952427 CTGAAGATTGTAGATCTTATCTCCCTGAGATAGCAGTGGAGCATATCAAAGACGATAAATCTTAT
1 CTGAAGATTGTAGATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCAAAGACGACAAATCTTAT
* * * *
94952492 CTTCTCGAGGTAGCAGGGGAGTAGATTTAAGCCACAAGCCTTATCTCCTTGAGGTAGCAAAGGAG
66 CTTCCCAAAGTAGCAGGGGAGCAGATTTAAGCCACAAGCCTTATCTCCTTGAGGTAGCAAAGGAG
94952557 TAGG
131 TAGG
* * * *
94952561 TTGAAGATTGTATATCATATCTCCTTGA-AGTAGCAGTGGAGCAGAT
1 CTGAAGATTGTAGATCTTATCTCCCTGAGA-TAGCAGTGGAGCAGAT
94952607 TGAAGATGGT
Statistics
Matches: 162, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
133 1 0.01
134 161 0.99
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (134 bp):
CTGAAGATTGTAGATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCAAAGACGACAAATCTTAT
CTTCCCAAAGTAGCAGGGGAGCAGATTTAAGCCACAAGCCTTATCTCCTTGAGGTAGCAAAGGAG
TAGG
Found at i:94952727 original size:45 final size:45
Alignment explanation
Indices: 94952662--94952908 Score: 180
Period size: 45 Copynumber: 5.5 Consensus size: 45
94952652 TTAAGTCACC
* * * **
94952662 AGTCTTATTTTCTTAAAGTTGCAGCAGAGCAGACTGAAGATAGCA
1 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCA
* * * *
94952707 GGTCTTATCTCCTTGAAGTTGTAGTGGAGTAGACTGAAAATAG-A
1 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCA
* * ** **
94952751 AGATCTTATCTCCCTAAAGTTGCAACGGAATAGA-TCGAAGATAGCA
1 AG-TCTTATCTCCTTGAAGTTGCAGTGGAGCAGACT-GAAGATAGCA
** * **
94952797 AACCTTATCT-CTCTGAAGTTGCAGTAGAGCAGGTTGAAG-TAGCA
1 AGTCTTATCTCCT-TGAAGTTGCAGTGGAGCAGACTGAAGATAGCA
* * * *
94952841 AGTCTTATCTCCCTGAAGTTACAGTGGAGCAAACTGAAGACCA-CA
1 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGA-TAGCA
** *
94952886 AACCTTATCTCCCTGAAGTTGCA
1 AGTCTTATCTCCTTGAAGTTGCA
94952909 ATAGAGCAAG
Statistics
Matches: 155, Mismatches: 39, Indels: 16
0.74 0.19 0.08
Matches are distributed among these distances:
44 38 0.25
45 113 0.73
46 4 0.03
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (45 bp):
AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCA
Found at i:94952916 original size:45 final size:44
Alignment explanation
Indices: 94952795--94952917 Score: 131
Period size: 44 Copynumber: 2.8 Consensus size: 44
94952785 TCGAAGATAG
* *** *
94952795 CAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGTAG
1 CAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAAACTGAAGTAA
** * *
94952839 CAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAAACTGAAG-ACCA
1 CAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAAACTGAAGTA--A
*
94952884 CAAACCTTATCTCCCTGAAGTTGCAATAGAGCAA
1 CAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAA
94952918 GTTGAAATTA
Statistics
Matches: 63, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
43 1 0.02
44 33 0.52
45 29 0.46
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (44 bp):
CAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAAACTGAAGTAA
Found at i:94952976 original size:89 final size:88
Alignment explanation
Indices: 94952754--94952976 Score: 232
Period size: 89 Copynumber: 2.5 Consensus size: 88
94952744 AAATAGAAGA
* * * * *
94952754 TCTTATCTCCCTAAAGTTGCAACGGAATAGATCGAAGATAGCAAACCTTATCTCTCTGAAGTTGC
1 TCTTATCTCCCTAAAGTTACAGCGGAGTAGATCGAAGCTA-CAAACCTTATCTCCCTGAAGTTGC
* * *
94952819 AGTAGAGCAGGTTGAAGTAGCAAG
65 AATAGAGCAAGTTGAAGTAGCAAC
* * * * *
94952843 TCTTATCTCCCTGAAGTTACAGTGGAGCA-AACTGAAGACCACAAACCTTATCTCCCTGAAGTTG
1 TCTTATCTCCCTAAAGTTACAGCGGAGTAGATC-GAAG-CTACAAACCTTATCTCCCTGAAGTTG
* *
94952907 CAATAGAGCAAGTTGAAATTATCAAC
64 CAATAGAGCAAGTTG-AAGTAGCAAC
* * * *
94952933 TCTTACCTCCTTAAAGTTCCAGCAGAGTAGATCGAAGCTACAAA
1 TCTTATCTCCCTAAAGTTACAGCGGAGTAGATCGAAGCTACAAA
94952977 TCTCTTTTCC
Statistics
Matches: 106, Mismatches: 24, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
88 2 0.02
89 68 0.64
90 34 0.32
91 2 0.02
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (88 bp):
TCTTATCTCCCTAAAGTTACAGCGGAGTAGATCGAAGCTACAAACCTTATCTCCCTGAAGTTGCA
ATAGAGCAAGTTGAAGTAGCAAC
Found at i:94953390 original size:4 final size:5
Alignment explanation
Indices: 94953371--94953405 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
94953361 TAGGAAGATA
94953371 TTATT TTATT TT-TAT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT
94953406 AAATTAGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 1 0.04
5 26 0.93
6 1 0.04
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:94953405 original size:15 final size:15
Alignment explanation
Indices: 94953371--94953401 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
94953361 TAGGAAGATA
94953371 TTATTTTATTTTTAT
1 TTATTTTATTTTTAT
94953386 TTATTTTA-TTTTAT
1 TTATTTTATTTTTAT
94953400 TT
1 TT
94953402 TATTAAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (15 bp):
TTATTTTATTTTTAT
Found at i:94953922 original size:3 final size:3
Alignment explanation
Indices: 94953909--94954091 Score: 54
Period size: 3 Copynumber: 61.3 Consensus size: 3
94953899 TTGAGTTTTA
* *
94953909 TAT TCAT TAT TAT TA- TATT TATT TAT T-T TTT TAG TAT TAT TAT T-T
1 TAT T-AT TAT TAT TAT TA-T TA-T TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
94953954 ATGT TAT TAC TGT TAC TACT AAT T-T TAT TAG TAT TGT TAT TAT TAT
1 -TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * *
94954000 TAC CAC TAT TAT TAT TAT TAT T-T TAT CAC TAC TGT CAT TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * *
94954046 TAG TAT TGT TAG TAT TGT TAT TAC TAT TGT TTT TAT TAT CAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
94954092 TTTTTTAAAA
Statistics
Matches: 128, Mismatches: 42, Indels: 20
0.67 0.22 0.11
Matches are distributed among these distances:
2 11 0.09
3 106 0.83
4 11 0.09
ACGTcount: A:0.27, C:0.07, G:0.06, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:94953982 original size:33 final size:34
Alignment explanation
Indices: 94953943--94954030 Score: 87
Period size: 33 Copynumber: 2.7 Consensus size: 34
94953933 ATTTTTTTAG
* *
94953943 TATTATTATTTA-TGTTATTACTGTTACTACTAAT
1 TATTATTATTTATTGTTATTACTATTACCACT-AT
* *
94953977 T-TTATTA-GTATTGTTATTATTATTACCACTAT
1 TATTATTATTTATTGTTATTACTATTACCACTAT
*
94954009 TATTATTA-TTATT-TTATCACTA
1 TATTATTATTTATTGTTATTACTA
94954031 CTGTCATTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
32 12 0.27
33 32 0.71
34 1 0.02
ACGTcount: A:0.30, C:0.09, G:0.05, T:0.57
Consensus pattern (34 bp):
TATTATTATTTATTGTTATTACTATTACCACTAT
Found at i:94954039 original size:26 final size:24
Alignment explanation
Indices: 94953985--94954046 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
94953975 ATTTTATTAG
*
94953985 TATTGTTATTATTATTACCACTAT
1 TATTATTATTATTATTACCACTAT
* *
94954009 TATTATTATTATT-TTATCACTAC
1 TATTATTATTATTATTACCACTAT
* *
94954032 TGTCATTATTATTAT
1 TATTATTATTATTAT
94954047 AGTATTGTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 19 0.59
24 13 0.41
ACGTcount: A:0.29, C:0.11, G:0.03, T:0.56
Consensus pattern (24 bp):
TATTATTATTATTATTACCACTAT
Found at i:94954206 original size:20 final size:19
Alignment explanation
Indices: 94954181--94954226 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 19
94954171 TAGAATTTCC
94954181 TTTATTATTTCATTAATTAT
1 TTTATTATTTCATT-ATTAT
*
94954201 TTTATTTATTTCATTTTTAT
1 TTTA-TTATTTCATTATTAT
94954221 TTTATT
1 TTTATT
94954227 CTTGTCCCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 2 0.08
20 12 0.50
21 10 0.42
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTATTATTTCATTATTAT
Found at i:94959212 original size:43 final size:43
Alignment explanation
Indices: 94959155--94959248 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
94959145 AACACTAAGG
* **
94959155 GACACACGGCCGTGTAACAAGACTGTGTGTCACACACGGCTAA
1 GACACACGGCCGTGTAAAAAGACCATGTGTCACACACGGCTAA
* *
94959198 GACACACGGCCGTGTAAAAAGACCATGTGTCACATACGGCTGA
1 GACACACGGCCGTGTAAAAAGACCATGTGTCACACACGGCTAA
94959241 GACACACG
1 GACACACG
94959249 CCTATGTAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.32, C:0.28, G:0.26, T:0.15
Consensus pattern (43 bp):
GACACACGGCCGTGTAAAAAGACCATGTGTCACACACGGCTAA
Found at i:94960230 original size:40 final size:40
Alignment explanation
Indices: 94960131--94960321 Score: 276
Period size: 40 Copynumber: 4.7 Consensus size: 40
94960121 ACTCGAATTC
* * **
94960131 TCGCACACTAAGTGCCAATACAGAGCCGGAGCTAT-TTTAA
1 TCGCACACTAAGTGCC-ATACATAGCCGAAGCTATCTCAAA
94960171 TCTTGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
1 TC--GCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
* **
94960213 TCGCACACTAAGTGCCATACATAGCCGTAGCTATCTTGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
*
94960253 TCGCACACTAAGTGCAATACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
94960293 TCGCACACTAAGTGCCATACATAGCCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAA
94960322 TTGTCATTAA
Statistics
Matches: 136, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
40 101 0.74
41 16 0.12
42 19 0.14
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.22
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
Found at i:94960273 original size:80 final size:80
Alignment explanation
Indices: 94960131--94960319 Score: 308
Period size: 80 Copynumber: 2.3 Consensus size: 80
94960121 ACTCGAATTC
* * *
94960131 TCGCACACTAAGTGCCAATACAGAGCCGGAGCTATTTTAATCTTGCACACTAAGTGCCATACATA
1 TCGCACACTAAGTGCC-ATACATAGCCGGAGCTATTTGAATC-TGCACACTAAGTGCAATACATA
94960196 GCCGAAGCTATCTCAAA
64 GCCGAAGCTATCTCAAA
*
94960213 TCGCACACTAAGTGCCATACATAGCCGTAGCTATCTTGAATC-GCACACTAAGTGCAATACATAG
1 TCGCACACTAAGTGCCATACATAGCCGGAGCTAT-TTGAATCTGCACACTAAGTGCAATACATAG
94960277 CCGAAGCTATCTCAAA
65 CCGAAGCTATCTCAAA
94960293 TCGCACACTAAGTGCCATACATAGCCG
1 TCGCACACTAAGTGCCATACATAGCCG
94960320 AATTGTCATT
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
80 64 0.63
81 16 0.16
82 22 0.22
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (80 bp):
TCGCACACTAAGTGCCATACATAGCCGGAGCTATTTGAATCTGCACACTAAGTGCAATACATAGC
CGAAGCTATCTCAAA
Found at i:94961112 original size:12 final size:12
Alignment explanation
Indices: 94961095--94961122 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
94961085 GTTTTGTTTT
94961095 ATTTTAATTATC
1 ATTTTAATTATC
94961107 ATTTTAATTATC
1 ATTTTAATTATC
94961119 ATTT
1 ATTT
94961123 ACAATATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (12 bp):
ATTTTAATTATC
Found at i:94964815 original size:19 final size:21
Alignment explanation
Indices: 94964791--94964833 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
94964781 TTTAACCAAT
*
94964791 TAATTTTTAT-AATTA-ATTA
1 TAATTTTTATCAATAATATTA
94964810 TAATTTTTATCAATAATATTA
1 TAATTTTTATCAATAATATTA
94964831 TAA
1 TAA
94964834 AAATAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.48
20 4 0.19
21 7 0.33
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (21 bp):
TAATTTTTATCAATAATATTA
Found at i:94965735 original size:24 final size:24
Alignment explanation
Indices: 94965705--94965759 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
94965695 TTATTTTATA
* *
94965705 TTTTTTAATATAACTA-CAATAATT
1 TTTTTTAATAGAAATATC-ATAATT
94965729 TTTTTT-ATAGAAATATCATAATT
1 TTTTTTAATAGAAATATCATAATT
94965752 TTTTTTAA
1 TTTTTTAA
94965760 AACAATTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 19 0.70
24 8 0.30
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (24 bp):
TTTTTTAATAGAAATATCATAATT
Found at i:94976087 original size:55 final size:56
Alignment explanation
Indices: 94975998--94976107 Score: 195
Period size: 55 Copynumber: 2.0 Consensus size: 56
94975988 ACTTAGGGAC
94975998 AGTTGCCCAAAAGAAAAAAAAAAGTTATCATCCGAAAATAGTAAATAGAGACACAT
1 AGTTGCCCAAAAGAAAAAAAAAAGTTATCATCCGAAAATAGTAAATAGAGACACAT
* *
94976054 AGTTGCCCAAAAG-AAAAAAATAGTTATCATCCGAAAATAGTAAATAGAGGCACA
1 AGTTGCCCAAAAGAAAAAAAAAAGTTATCATCCGAAAATAGTAAATAGAGACACA
94976108 CTAGGTCCTC
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
55 39 0.75
56 13 0.25
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.18
Consensus pattern (56 bp):
AGTTGCCCAAAAGAAAAAAAAAAGTTATCATCCGAAAATAGTAAATAGAGACACAT
Found at i:94984024 original size:22 final size:21
Alignment explanation
Indices: 94983999--94984054 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
94983989 ATATTAGAAT
94983999 GAATTATAATAAATAACTAAAG
1 GAATTATAATAAAT-ACTAAAG
*
94984021 GAATAATATAA-AAATACTAATG
1 GAAT--TATAATAAATACTAAAG
*
94984043 TAATTATAATAA
1 GAATTATAATAA
94984055 CAATAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
20 5 0.17
21 2 0.07
22 13 0.45
23 4 0.14
24 5 0.17
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (21 bp):
GAATTATAATAAATACTAAAG
Found at i:94984130 original size:13 final size:13
Alignment explanation
Indices: 94984112--94984136 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94984102 AAGGTAACTT
94984112 AAAATAAAAAATA
1 AAAATAAAAAATA
94984125 AAAATAAAAAAT
1 AAAATAAAAAAT
94984137 GCATAATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAATA
Found at i:94984360 original size:61 final size:60
Alignment explanation
Indices: 94984287--94984485 Score: 245
Period size: 61 Copynumber: 3.4 Consensus size: 60
94984277 AGGCAACAAT
94984287 AAATAAATAAGTAAATAATAGTAAAATAAAAAAATTCATGAAAGACTGAAATTGCAATAAA
1 AAATAAATAAGTAAATAATA-TAAAATAAAAAAATTCATGAAAGACTGAAATTGCAATAAA
* *
94984348 AAATAAATAAGTAAATAATA-AAAATATAAAAAATTCATGAAAGGCTAAAATTGCAATAAAA
1 AAATAAATAAGTAAATAATATAAAATA-AAAAAATTCATGAAAGACTGAAATTGCAAT-AAA
* * * *
94984409 AAATAAATAAG----TAA-AT--AATAAAAAAATT-ATGAAAGTCTGGAGTTGCAATAAT
1 AAATAAATAAGTAAATAATATAAAATAAAAAAATTCATGAAAGACTGAAATTGCAATAAA
*
94984461 AAATAAATAAGTAAATAATAAAAAA
1 AAATAAATAAGTAAATAATATAAAA
94984486 ATCATGAAAT
Statistics
Matches: 120, Mismatches: 8, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
52 13 0.11
53 17 0.14
54 8 0.07
55 4 0.03
56 4 0.03
57 4 0.03
59 8 0.07
60 28 0.23
61 34 0.28
ACGTcount: A:0.63, C:0.04, G:0.10, T:0.24
Consensus pattern (60 bp):
AAATAAATAAGTAAATAATATAAAATAAAAAAATTCATGAAAGACTGAAATTGCAATAAA
Found at i:94984466 original size:52 final size:52
Alignment explanation
Indices: 94984353--94984544 Score: 227
Period size: 52 Copynumber: 3.7 Consensus size: 52
94984343 ATAAAAAATA
* * * *
94984353 AATAAGTAAATAA-TAAA-AATATAAAAAATTCATGAAAGGCTAAAATTGCAAT
1 AATAAATAAATAAGTAAATAATA-AAAAAA-TCATGAAAGTCTGAAGTTGCAAT
* * *
94984405 AAAAAAATAAATAAGTAAATAATAAAAAAATTATGAAAGTCTGGAGTTGCAAT
1 -AATAAATAAATAAGTAAATAATAAAAAAATCATGAAAGTCTGAAGTTGCAAT
94984458 AATAAATAAATAAGTAAATAATAAAAAAATCATGAAA-TGCTGAAGTTGC---
1 AATAAATAAATAAGTAAATAATAAAAAAATCATGAAAGT-CTGAAGTTGCAAT
94984507 AAT-AATAAATAAGTAAATAATAAAAAAAATCATGAAAG
1 AATAAATAAATAAGTAAATAAT-AAAAAAATCATGAAAG
94984545 GCTAAAATTA
Statistics
Matches: 124, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
48 18 0.15
49 18 0.15
51 1 0.01
52 44 0.35
53 29 0.23
54 10 0.08
55 4 0.03
ACGTcount: A:0.60, C:0.05, G:0.11, T:0.24
Consensus pattern (52 bp):
AATAAATAAATAAGTAAATAATAAAAAAATCATGAAAGTCTGAAGTTGCAAT
Found at i:94984469 original size:105 final size:101
Alignment explanation
Indices: 94984353--94984544 Score: 255
Period size: 105 Copynumber: 1.9 Consensus size: 101
94984343 ATAAAAAATA
*
94984353 AATAAGTAAATAA-TAAA-AATATAAAAAATTCATGAAAGGCTAAAATTGCAATAAAAAAATAAA
1 AATAAATAAATAAGTAAATAATA-AAAAAA-TCATGAAAGGCTAAAATTGCAAT-----AATAAA
*
94984416 TAAGTAAATAAT-AAAAAAATTATGAAAGTCTGGAGTTGCAAT
59 TAAGTAAATAATAAAAAAAATCATGAAAGTCTGGAGTTGCAAT
* * *
94984458 AATAAATAAATAAGTAAATAATAAAAAAATCATGAAATGCTGAAGTTGCAATAATAAATAAGTAA
1 AATAAATAAATAAGTAAATAATAAAAAAATCATGAAAGGCTAAAATTGCAATAATAAATAAGTAA
94984523 ATAATAAAAAAAATCATGAAAG
66 ATAATAAAAAAAATCATGAAAG
94984545 GCTAAAATTA
Statistics
Matches: 79, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
100 18 0.23
101 15 0.19
105 32 0.41
106 10 0.13
107 4 0.05
ACGTcount: A:0.60, C:0.05, G:0.11, T:0.24
Consensus pattern (101 bp):
AATAAATAAATAAGTAAATAATAAAAAAATCATGAAAGGCTAAAATTGCAATAATAAATAAGTAA
ATAATAAAAAAAATCATGAAAGTCTGGAGTTGCAAT
Found at i:94984563 original size:49 final size:48
Alignment explanation
Indices: 94984346--94984563 Score: 190
Period size: 52 Copynumber: 4.3 Consensus size: 48
94984336 AATTGCAATA
* *
94984346 AAAAATAAATAAGTAAATAA-TAAA-AATATAAAAAATTCATGAAAGGCT
1 AAAATTAAATAAATAAATAAGTAAATAATA-AAAAAA-TCATGAAAGGCT
* * *
94984394 AAAATTGCAATAAAAAAATAAATAAGTAAATAATAAAAAAATTATGAAAGTCT
1 AAAA-T----TAAATAAATAAATAAGTAAATAATAAAAAAATCATGAAAGGCT
** * *
94984447 GGAGTTGCAATAATAAATAAATAAGTAAATAATAAAAAAATCATGAAATGCT
1 AAAATT---A-AATAAATAAATAAGTAAATAATAAAAAAATCATGAAAGGCT
* * *
94984499 GAAGTTGCAAT-AATAAATAAGTAAATAATAAAAAAAATCATGAAAGGCT
1 AAAATT-AAATAAATAAATAAGTAAATAAT-AAAAAAATCATGAAAGGCT
94984548 AAAATTAAATAAATAA
1 AAAATTAAATAAATAA
94984564 TGGACTGAAT
Statistics
Matches: 138, Mismatches: 19, Indels: 25
0.76 0.10 0.14
Matches are distributed among these distances:
48 26 0.19
49 30 0.22
51 1 0.01
52 43 0.31
53 24 0.17
54 10 0.07
55 4 0.03
ACGTcount: A:0.61, C:0.05, G:0.10, T:0.24
Consensus pattern (48 bp):
AAAATTAAATAAATAAATAAGTAAATAATAAAAAAATCATGAAAGGCT
Found at i:95013647 original size:61 final size:62
Alignment explanation
Indices: 95013527--95013647 Score: 181
Period size: 61 Copynumber: 2.0 Consensus size: 62
95013517 AAACCGATAG
** * *
95013527 CATTCGAAAACTTTGAAATACATAGAAAATTTTTCCAACATTTCAGGGTCATACGCCCGTAA
1 CATTCGAAAACTTTGAAATACATAGAAAAAATTTCCAACATTTCAGGGTCACACACCCGTAA
* *
95013589 CATTCGTAAACTTTGAAATACATA-AAAAAATTTCCAACATTTTAGGGTCACACACCCGT
1 CATTCGAAAACTTTGAAATACATAGAAAAAATTTCCAACATTTCAGGGTCACACACCCGT
95013648 GTGAACAAGC
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
61 30 0.57
62 23 0.43
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (62 bp):
CATTCGAAAACTTTGAAATACATAGAAAAAATTTCCAACATTTCAGGGTCACACACCCGTAA
Found at i:95015005 original size:43 final size:43
Alignment explanation
Indices: 95014940--95015112 Score: 172
Period size: 43 Copynumber: 4.0 Consensus size: 43
95014930 AGCTCATACA
* * *
95014940 ATGCC-ATATCCCAGATATGGTCTTACACGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * * *
95014982 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCGA-TTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC-ACATATCG
* * * * *
95015025 ATGTCAATGTCCTAGACATGGTCTTACATGTAATCTCA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* *
95015068 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATCTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
95015111 AT
1 AT
95015113 AACCTCATGC
Statistics
Matches: 103, Mismatches: 23, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
42 6 0.06
43 95 0.92
44 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:95017103 original size:20 final size:21
Alignment explanation
Indices: 95017078--95017120 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
95017068 ATACCTATCA
95017078 ACTT-AACCATGCAAATTTCT
1 ACTTAAACCATGCAAATTTCT
95017098 ACTTAAACCATGCAAATTTCT
1 ACTTAAACCATGCAAATTTCT
95017119 AC
1 AC
95017121 ATCCATGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.33
Consensus pattern (21 bp):
ACTTAAACCATGCAAATTTCT
Found at i:95017678 original size:5 final size:5
Alignment explanation
Indices: 95017668--95017741 Score: 116
Period size: 5 Copynumber: 14.8 Consensus size: 5
95017658 AATTATGTTT
95017668 TTATA TTATA TTATTA TTA-A -TATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTA-TA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
95017717 TTATA TTATA TTATTA TTATA TTAT
1 TTATA TTATA TTA-TA TTATA TTAT
95017742 TATATATATG
Statistics
Matches: 65, Mismatches: 0, Indels: 8
0.89 0.00 0.11
Matches are distributed among these distances:
3 2 0.03
4 2 0.03
5 51 0.78
6 10 0.15
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:95017684 original size:3 final size:3
Alignment explanation
Indices: 95017671--95017744 Score: 69
Period size: 3 Copynumber: 28.0 Consensus size: 3
95017661 TATGTTTTTA
*
95017671 TAT TA- TAT TAT TAT TAA TA- TAT TA- TAT TA- TAT TA- TAT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
95017713 TA- TAT TA- TAT TA- TAT TAT TAT TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
95017745 ATATATGATA
Statistics
Matches: 60, Mismatches: 1, Indels: 20
0.74 0.01 0.25
Matches are distributed among these distances:
2 20 0.33
3 40 0.67
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:95017747 original size:10 final size:10
Alignment explanation
Indices: 95017671--95017750 Score: 64
Period size: 10 Copynumber: 8.0 Consensus size: 10
95017661 TATGTTTTTA
95017671 TATTATATTAT
1 TATTATA-TAT
95017682 TATTA-ATA-
1 TATTATATAT
95017690 TATTATAT-T
1 TATTATATAT
95017699 ATATTATAT-T
1 -TATTATATAT
95017709 ATATTATAT-T
1 -TATTATATAT
95017719 ATATTATATTAT
1 -TATTATA-TAT
95017731 TATTATATTAT
1 TATTATA-TAT
95017742 TA-TATATAT
1 TATTATATAT
95017751 GATAAAGAAA
Statistics
Matches: 64, Mismatches: 0, Indels: 12
0.84 0.00 0.16
Matches are distributed among these distances:
8 5 0.08
9 7 0.11
10 32 0.50
11 19 0.30
12 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TATTATATAT
Found at i:95017816 original size:40 final size:40
Alignment explanation
Indices: 95017759--95017854 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 40
95017749 ATGATAAAGA
95017759 AAGAAAGAAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
1 AAGAAAG-AAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
* *
95017800 GAGAAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
*
95017840 AAGGAAGGAAAGAAA
1 AA-GAAAGAAAGAAA
95017855 GAAAGAAAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 33 0.66
41 17 0.34
ACGTcount: A:0.64, C:0.08, G:0.28, T:0.00
Consensus pattern (40 bp):
AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
Found at i:95018621 original size:29 final size:30
Alignment explanation
Indices: 95018562--95018619 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
95018552 TCCGAGCCTT
*
95018562 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
95018592 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
95018620 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:95018849 original size:13 final size:13
Alignment explanation
Indices: 95018831--95018862 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
95018821 TTTCCAGCAA
95018831 TTATGAATTTATT
1 TTATGAATTTATT
95018844 TTATGAATTTATT
1 TTATGAATTTATT
*
95018857 TGATGA
1 TTATGA
95018863 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:95019070 original size:50 final size:50
Alignment explanation
Indices: 95018957--95019198 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
95018947 ATTTGGGTAA
* * *
95018957 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
95019013 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
95019063 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
95019113 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
95019163 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
95019199 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:95019146 original size:100 final size:103
Alignment explanation
Indices: 95018957--95019206 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
95018947 ATTTGGGTAA
95018957 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
95019022 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
95019063 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
95019125 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
95019163 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
95019207 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:95021129 original size:42 final size:42
Alignment explanation
Indices: 95021020--95021169 Score: 169
Period size: 42 Copynumber: 3.5 Consensus size: 42
95021010 ACAATAACCT
* * * *
95021020 AGATATGGTCTTACA-TATAATCTCGTATCGATGCCAATAGCCC
1 AGATATGGTCTTACACGA-AGTCTCATATCGATGCC-ATATCCC
* * *
95021063 AGCTATGGTCTTACACGAAATCTCATATCGATGCCATATCCT
1 AGATATGGTCTTACACGAAGTCTCATATCGATGCCATATCCC
*
95021105 AGATATGGTCTTATACGAAGTCTCATA-CTGATGCCATATCCC
1 AGATATGGTCTTACACGAAGTCTCATATC-GATGCCATATCCC
* *
95021147 AGATATAGTCTTACACGTAGTCT
1 AGATATGGTCTTACACGAAGTCT
95021170 TAGTAACACC
Statistics
Matches: 93, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
41 1 0.01
42 61 0.66
43 30 0.32
44 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (42 bp):
AGATATGGTCTTACACGAAGTCTCATATCGATGCCATATCCC
Found at i:95023274 original size:20 final size:20
Alignment explanation
Indices: 95023249--95023290 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
95023239 GTGTCAAAAG
95023249 ATAGTTTTTTTTATACTTTA
1 ATAGTTTTTTTTATACTTTA
95023269 ATAGTTTTTTTTATACTTTA
1 ATAGTTTTTTTTATACTTTA
95023289 AT
1 AT
95023291 TATTAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (20 bp):
ATAGTTTTTTTTATACTTTA
Found at i:95023859 original size:9 final size:9
Alignment explanation
Indices: 95023845--95023884 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
95023835 TGCAAATTAA
95023845 AAAAGAAAG
1 AAAAGAAAG
95023854 AAAAGAAA-
1 AAAAGAAAG
95023862 AGAAAGAAAG
1 A-AAAGAAAG
*
95023872 AAAAGAAGG
1 AAAAGAAAG
95023881 AAAA
1 AAAA
95023885 AACGCACGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 1 0.04
9 26 0.93
10 1 0.04
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:95024433 original size:10 final size:10
Alignment explanation
Indices: 95024414--95024464 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
95024404 TGTATCGTTC
*
95024414 TTTATATTTA
1 TTTATTTTTA
*
95024424 ATTATTTTTA
1 TTTATTTTTA
95024434 TTTATTTTTA
1 TTTATTTTTA
*
95024444 TTTATTTGTA
1 TTTATTTTTA
95024454 TTTATCTTTTA
1 TTTAT-TTTTA
95024465 GTATTTAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
10 31 0.89
11 4 0.11
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.73
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:95024469 original size:20 final size:20
Alignment explanation
Indices: 95024426--95024470 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
95024416 TATATTTAAT
* *
95024426 TATTTTTATTTATTTTTATT
1 TATTTGTATTTATTTTTATG
95024446 TATTTGTATTTATCTTTTA-G
1 TATTTGTATTTAT-TTTTATG
95024466 TATTT
1 TATTT
95024471 AATTAGGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.73
Consensus pattern (20 bp):
TATTTGTATTTATTTTTATG
Found at i:95025209 original size:17 final size:18
Alignment explanation
Indices: 95025177--95025210 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
95025167 TATTCTCCAT
*
95025177 TTTAATTTTCATAATTTA
1 TTTAATTTTCACAATTTA
95025195 TTTAA-TTTCACAATTT
1 TTTAATTTTCACAATTT
95025211 CTATTTGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTAATTTTCACAATTTA
Found at i:95026976 original size:28 final size:28
Alignment explanation
Indices: 95026932--95026999 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 28
95026922 TCTTAATTTT
95026932 TATTA-TTTATTTCATTTTATTAGTATC
1 TATTATTTTATTTCATTTTATTAGTATC
* *
95026959 TATTATTTTATTTTATTTTATTAGTATT
1 TATTATTTTATTTCATTTTATTAGTATC
95026987 TATTATTTTATTT
1 TATTATTTTATTT
95027000 AATTATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 5 0.13
28 33 0.87
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (28 bp):
TATTATTTTATTTCATTTTATTAGTATC
Found at i:95026992 original size:23 final size:23
Alignment explanation
Indices: 95026938--95027019 Score: 73
Period size: 28 Copynumber: 3.5 Consensus size: 23
95026928 TTTTTATTAT
*
95026938 TTATTTCATTTTATTAGTATCTATTA
1 TTATTTTATTTTATTAGTA--T-TTA
95026964 TTTTATTTTATTTTATTAGTATTTA
1 --TTATTTTATTTTATTAGTATTTA
*
95026989 TTATTTTA-TTTA--ATTATTTA
1 TTATTTTATTTTATTAGTATTTA
95027009 TTA-TTTATTTT
1 TTATTTTATTTT
95027020 GGATATTAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
19 4 0.08
20 13 0.25
22 4 0.08
23 8 0.16
25 3 0.06
26 1 0.02
28 18 0.35
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (23 bp):
TTATTTTATTTTATTAGTATTTA
Found at i:95028292 original size:96 final size:97
Alignment explanation
Indices: 95028128--95028307 Score: 249
Period size: 96 Copynumber: 1.9 Consensus size: 97
95028118 TTTTTAAGAA
* * ** *
95028128 TATGTTAGGCTGAGTAATCGGGGTGAGGAGTTTGGCTGTCATCTTTCTTCGTGTCGAAAGGTTCA
1 TATGTTAGGCTGAGTAACCGGGGTGAGGAGTTTGGCTGTCATCTCTCTTCACGTCAAAAGGTTCA
* *
95028193 ATATGTTCTTAAG-AAAAATAAAAATTAGGAG
66 ATATATTCCTAAGTAAAAATAAAAATTAGGAG
*
95028224 TATGTTGGGCTGAGTAACCGGGGT-AGG-GTGCTTGGCTGTCATCTCTCTTCACGTCAAAAGGTT
1 TATGTTAGGCTGAGTAACCGGGGTGAGGAGT--TTGGCTGTCATCTCTCTTCACGTCAAAAGGTT
95028287 CAATATATTCCTAAGTAAAAA
64 CAATATATTCCTAAGTAAAAA
95028308 AAATTCATTA
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
94 2 0.03
95 3 0.04
96 63 0.86
97 5 0.07
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (97 bp):
TATGTTAGGCTGAGTAACCGGGGTGAGGAGTTTGGCTGTCATCTCTCTTCACGTCAAAAGGTTCA
ATATATTCCTAAGTAAAAATAAAAATTAGGAG
Found at i:95028322 original size:13 final size:13
Alignment explanation
Indices: 95028304--95028336 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
95028294 TTCCTAAGTA
*
95028304 AAAAAAATTCATT
1 AAAAAAATTAATT
95028317 AAAAAAATTAATT
1 AAAAAAATTAATT
95028330 AAAAAAA
1 AAAAAAA
95028337 GAAGAAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (13 bp):
AAAAAAATTAATT
Found at i:95028354 original size:13 final size:12
Alignment explanation
Indices: 95028330--95028363 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
95028320 AAAATTAATT
*
95028330 AAAAAAAGAAGA
1 AAAAAAAAAAGA
95028342 AAAAGAAAAAAGA
1 AAAA-AAAAAAGA
95028355 AAAAAAAAA
1 AAAAAAAAA
95028364 GACATATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAGA
Found at i:95028361 original size:16 final size:16
Alignment explanation
Indices: 95028331--95028361 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95028321 AAATTAATTA
*
95028331 AAAAAAGAAGAAAAAG
1 AAAAAAGAAAAAAAAG
95028347 AAAAAAGAAAAAAAA
1 AAAAAAGAAAAAAAA
95028362 AAGACATATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAAAAAAG
Found at i:95029018 original size:20 final size:20
Alignment explanation
Indices: 95028982--95029020 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
95028972 TAATTTTAGG
*
95028982 ATTTATCTTTATTTATTTAT
1 ATTTATCTTTATGTATTTAT
95029002 ATTTATCTTT-TAGTATTTA
1 ATTTATCTTTAT-GTATTTA
95029021 ATTAGGAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (20 bp):
ATTTATCTTTATGTATTTAT
Found at i:95031634 original size:48 final size:48
Alignment explanation
Indices: 95031514--95031836 Score: 379
Period size: 48 Copynumber: 6.7 Consensus size: 48
95031504 AATTTCTGTA
* * * *
95031514 TAAGACCATAGCTGGGCTATGGCATCGGAGAGATGTGATTATGTGCTACTGTA
1 TAAGACCATAGCTGGGCTATGGCATC--A-ATATGTGA-TATGTGAT-CCGTG
*
95031567 TAAGACCATAGCTGTGCTATGGCATCAATATGTGATATGTGATCCGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGATCCGTG
*
95031615 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATCCGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGATCCGTG
* * * *
95031663 TCAGACCATAGCTAGGCTATGGCATCGATATGTGATATGTGATCTGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGATCCGTG
* * * * *
95031711 TCAGACCATAGCTAGGCTATGACATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGA-TCCGTG
* *
95031760 TAAGACCATAACTGGGCTATGGCATCCATATGTGA-A--T-AT--GTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGATCCGTG
* *
95031802 TAAGACCATAGTTGGGCTATGGCATCATTATGTGA
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGA
95031837 AGATGTGTAA
Statistics
Matches: 247, Mismatches: 22, Indels: 13
0.88 0.08 0.05
Matches are distributed among these distances:
42 34 0.14
44 1 0.00
45 1 0.00
46 1 0.00
48 136 0.55
49 41 0.17
50 7 0.03
51 1 0.00
53 25 0.10
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGATCCGTG
Found at i:95031742 original size:144 final size:149
Alignment explanation
Indices: 95031516--95031801 Score: 413
Period size: 145 Copynumber: 1.9 Consensus size: 149
95031506 TTTCTGTATA
* *
95031516 AGACCATAGCTGGGCTATGGCATCGGAGAGATGTGATTATGTGCTACTGTATAAGACCATAGCTG
1 AGACCATAGCTAGGCTATGGCATC-G-GAGATGTGATTATGTGATACTGTATAAGACCATAGCTG
* * * *
95031581 TGCTATGGCATCAATATGTGATATGTGA-TCCGTGTAAGACCATAGCTGGGCTATGGCATCGATA
64 TGCTATGACATCAATATGTGATATGTGATTACGTGTAAGACCATAACTGGGCTATGGCATCCATA
95031645 TGTG-ATATGTGATCCGTGTC
129 TGTGAATATGTGATCCGTGTC
* * *
95031665 AGACCATAGCTAGGCTATGGCATC-GATATGTGA-TATGTGAT-CTGTGTCAGACCATAGCTAG-
1 AGACCATAGCTAGGCTATGGCATCGGAGATGTGATTATGTGATACTGTATAAGACCATAGCT-GT
*
95031726 GCTATGACATCGATATGTGATATGTGATTACGTGTAAGACCATAACTGGGCTATGGCATCCATAT
65 GCTATGACATCAATATGTGATATGTGATTACGTGTAAGACCATAACTGGGCTATGGCATCCATAT
95031791 GTGAATATGTG
130 GTGAATATGTG
95031802 TAAGACCATA
Statistics
Matches: 124, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
144 41 0.33
145 45 0.36
146 15 0.12
149 23 0.19
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (149 bp):
AGACCATAGCTAGGCTATGGCATCGGAGATGTGATTATGTGATACTGTATAAGACCATAGCTGTG
CTATGACATCAATATGTGATATGTGATTACGTGTAAGACCATAACTGGGCTATGGCATCCATATG
TGAATATGTGATCCGTGTC
Found at i:95031804 original size:42 final size:41
Alignment explanation
Indices: 95031745--95031853 Score: 155
Period size: 42 Copynumber: 2.6 Consensus size: 41
95031735 TCGATATGTG
* *
95031745 ATATGTGATTACGTGTAAGACCATAACTGGGCTATGGCATCC
1 ATATGTGAATATGTGTAAGACCATAACTGGGCTATGGCAT-C
**
95031787 ATATGTGAATATGTGTAAGACCATAGTTGGGCTATGGCATC
1 ATATGTGAATATGTGTAAGACCATAACTGGGCTATGGCATC
*
95031828 ATTATGTGAAGATGTGTAAGACCATA
1 A-TATGTGAATATGTGTAAGACCATA
95031854 GTTGAACTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 2 0.03
42 59 0.97
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (41 bp):
ATATGTGAATATGTGTAAGACCATAACTGGGCTATGGCATC
Found at i:95031854 original size:42 final size:42
Alignment explanation
Indices: 95031757--95031867 Score: 161
Period size: 42 Copynumber: 2.6 Consensus size: 42
95031747 ATGTGATTAC
** *
95031757 GTGTAAGACCATAACTGGGCTATGGCATCCATATGTGAATAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCCATATGTGAAGAT
95031799 GTGTAAGACCATAGTTGGGCTATGGCAT-CATTATGTGAAGAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCCA-TATGTGAAGAT
**
95031841 GTGTAAGACCATAGTTGAACTATGGCA
1 GTGTAAGACCATAGTTGGGCTATGGCA
95031868 ACGAGAAAAC
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 2 0.03
42 61 0.97
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATAGTTGGGCTATGGCATCCATATGTGAAGAT
Found at i:95034351 original size:18 final size:18
Alignment explanation
Indices: 95034313--95034361 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
95034303 TGTTCTATAT
*
95034313 TGAAATG-ACATG-GTTG
1 TGAAATGAAAATGAGTTG
*
95034329 AGAAATGAAAATGAGTTG
1 TGAAATGAAAATGAGTTG
95034347 TGAAATGAAATATGA
1 TGAAATGAAA-ATGA
95034362 AATGGTATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 6 0.22
17 4 0.15
18 13 0.48
19 4 0.15
ACGTcount: A:0.45, C:0.02, G:0.27, T:0.27
Consensus pattern (18 bp):
TGAAATGAAAATGAGTTG
Found at i:95035716 original size:48 final size:48
Alignment explanation
Indices: 95035660--95035751 Score: 157
Period size: 48 Copynumber: 1.9 Consensus size: 48
95035650 TTCAAGAAGG
*
95035660 GATAAATAGTGATAAGAGTGTACACAGTGGAAAACCAAGTTTAGTAAT
1 GATAAATAGTGATAAGAATGTACACAGTGGAAAACCAAGTTTAGTAAT
* *
95035708 GATAAATAGTGATAAGAATGTAGATAGTGGAAAACCAAGTTTAG
1 GATAAATAGTGATAAGAATGTACACAGTGGAAAACCAAGTTTAG
95035752 CATTGCATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.45, C:0.07, G:0.24, T:0.25
Consensus pattern (48 bp):
GATAAATAGTGATAAGAATGTACACAGTGGAAAACCAAGTTTAGTAAT
Found at i:95046233 original size:17 final size:18
Alignment explanation
Indices: 95046211--95046247 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
95046201 TGGACTAAAA
*
95046211 TTTTATTT-GTTTTTGTT
1 TTTTATTTGGTTTTGGTT
95046228 TTTTATTTGGTTTTGGTT
1 TTTTATTTGGTTTTGGTT
95046246 TT
1 TT
95046248 GTTTTGTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.05, C:0.00, G:0.16, T:0.78
Consensus pattern (18 bp):
TTTTATTTGGTTTTGGTT
Found at i:95046705 original size:94 final size:94
Alignment explanation
Indices: 95046542--95047929 Score: 1339
Period size: 94 Copynumber: 14.8 Consensus size: 94
95046532 GTTTTAATTC
* * * ** *
95046542 GACCTACTGCAACTTCAGAGGTATAGGATTTGTAAC-T--TCTTGCTCCACTATAACTTTAGGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
*
95046604 GATAAGACTCGCTATGGTAGA-TTCAATCT
66 GATAAGATTCGCTATGGTA-ACTTCAATCT
* * * * *
95046633 GACCTACTACAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAAGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
* **
95046698 GATAAGACTCGCTATAATAGA-TTCAAT-T
66 GATAAGATTCGCTATGGTA-ACTTCAATCT
* * * * * * * * * * * *
95046726 CGGCCCATTGTAACTTCAGCGGTTTATGATTTGTAGCTTTATCTTACTTCGCTGTAACTTTAGGG
1 -GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGG
* * *
95046791 AGATAAGATTCTCTATGGCAACTTCAATCC
65 AGATAAGATTCGCTATGGTAACTTCAATCT
* * * *
95046821 GACCCACTGTAACTTCAGGGGTATAGGATTGGTAGCTTCATCTTGCTCCACTGCAATTTCTGGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
* * * *
95046886 GATAAGATTCACTATGGTAACTTTAACCC
66 GATAAGATTCGCTATGGTAACTTCAATCT
* *
95046915 GACCCACTACAACTTCAAGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
* * * *
95046980 AATAAGATTCACTATGATAAATTCAATCT
66 GATAAGATTCGCTATGGTAACTTCAATCT
* * * ** * * * * *
95047009 GATCCACTGCAACTTTAGGGGTGTAAAATTTGTAGTTTCATCTTACTCTACTGCAACTTTAGAGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
* * *
95047074 GATAAGATTCGTTATGGTAACTTTAATCC
66 GATAAGATTCGCTATGGTAACTTCAATCT
* * * * * * *
95047103 GACCCACAGCAACTTCAGAGGTATAAGATTTGTAGCTTCATATTGCTCCACTGCAAATTTAGGAA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
* *
95047168 GATAAGACTCGCTATGGTAGA-TTCAATCC
66 GATAAGATTCGCTATGGTA-ACTTCAATCT
* * * * * * * *
95047197 AACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATTTTACTCTATTACAAATTCAAGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
*
95047262 GATAAGTTTCGCTATGGTAACTTCAATCT
66 GATAAGATTCGCTATGGTAACTTCAATCT
* * * *
95047291 GACCCACTGCAACTTCAAGGGTATAGGATTTGTAGCTTCATCTAGCTCCATTGCAACTTCTA-GA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTC-AGGG
*
95047355 AGATAAGATTCGCTATGGTAACTTTAAT-T
65 AGATAAGATTCGCTATGGTAACTTCAATCT
* * * * * *
95047384 CGACCCACTGCAACTTCAAGGGTAGA-GAATTGTAGCTTCATCTTGCTCCATTGCAATTTTAGGG
1 -GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGG
* * *
95047448 AGATAAGACTCGCTATGATAGA-TTCAATGT
65 AGATAAGATTCGCTATGGTA-ACTTCAATCT
* * * * * * *
95047478 GACCTAATGCAACTTTAGGGGTATCA-GATTTGTAACTTCATCTTGCTCCACTACAATTTTAGGG
1 GACCCACTGCAACTTCAGGGGTAT-AGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGG
* *
95047542 AAATAAGACTT-GCTATAGTAGA-TTCAATCT
65 AGATAAGA-TTCGCTATGGTA-ACTTCAATCT
* * * * * *
95047572 GACCCAGTGCAACTTTAAGGGTATGGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTCAAGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
* * *
95047637 GTTAAGATTCGTTATGGTAACTTCAATCC
66 GATAAGATTCGCTATGGTAACTTCAATCT
* * ** * * * * *
95047666 GACCCAGTGAAACTTCATAGGAATAGGATTTGTAGCTTTATCTTACACTCCACTGCAACTTTAGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTT--GCTCCACTGCAACTTCAGG
* * *
95047731 GAGATAAGATTTGCTATGGTAACTTTAATTT
64 GAGATAAGATTCGCTATGGTAACTTCAATCT
* ** * * * *
95047762 GACCCACTGCAAATTCAGGGGTATATAATTTGTAACTTCATCTTGCTCTACTACAACTTTAGGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
** * *
95047827 GAT-AGAATTTACTATTGTAGCTTCAATCT
66 GATAAG-ATTCGCTATGGTAACTTCAATCT
* * * * *
95047856 GACCCATTACAACTTCAGGGGTATAGGATTTGTAGTTTCATCTTACTCTACTGCAACTTCAGGGA
1 GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
95047921 GATAAGATT
66 GATAAGATT
95047930 TGAGGTTTCA
Statistics
Matches: 1067, Mismatches: 208, Indels: 41
0.81 0.16 0.03
Matches are distributed among these distances:
91 32 0.03
92 2 0.00
93 82 0.08
94 873 0.82
95 5 0.00
96 73 0.07
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (94 bp):
GACCCACTGCAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGA
GATAAGATTCGCTATGGTAACTTCAATCT
Found at i:95047083 original size:282 final size:281
Alignment explanation
Indices: 95046541--95047929 Score: 1477
Period size: 282 Copynumber: 4.9 Consensus size: 281
95046531 AGTTTTAATT
* * **
95046541 CGACCTACTGCAACTTCAGAGGTATAGGATTTGTAAC-T--TCTTGCTCCACTATAACTTTAGGG
1 CGACCCACTGCAACTTCAGAGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAA-TTTAGGG
* * *
95046603 AGATAAGACTCGCTATGGTAGATTCAATCTGACCTACTACAACTTTAGGGGTATAGGATTTGTAG
65 AGATAAGACTCGCTATGGTAGATTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAG
* * * *
95046668 CTTCATCTTGCTCCACTACAACTTCAAGGAGATAAGACTCGCTATAATAGATTCAAT-TCGGCCC
130 CTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATGATAGATTCAATCT-GACCC
* * * * * * * *
95046732 ATTGTAACTTCAGCGGTTTATGATTTGTAGCTTT-ATCTTACT-TCGCTGTAACTTTAGGGAGAT
194 ACTGCAACTTCAGGGGTATAGGATTTGTAG-TTTCATCTTACTCT-ACTGCAACTTTAGAGAGAT
*
95046795 AAGATTC-TCTATGGCAACTTCAATC
257 AAGATTCGT-TATGGTAACTTCAATC
* * * *
95046820 CGACCCACTGTAACTTCAGGGGTATAGGATTGGTAGCTTCATCTTGCTCCACTGCAATTTCTGGG
1 CGACCCACTGCAACTTCAGAGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAATTT-AGGG
* * * * * * *
95046885 AGATAAGATTCACTATGGTA-ACTTTAACCCGACCCACTACAACTTCAAGGGTATAGGATTTGTA
65 AGATAAGACTCGCTATGGTAGA-TTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTA
* * * * *
95046949 GCTTCATCTTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATGATAAATTCAATCTGATCC
129 GCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATGATAGATTCAATCTGACCC
* * **
95047014 ACTGCAACTTTAGGGGTGTAAAATTTGTAGTTTCATCTTACTCTACTGCAACTTTAGAGAGATAA
194 ACTGCAACTTCAGGGGTATAGGATTTGTAGTTTCATCTTACTCTACTGCAACTTTAGAGAGATAA
*
95047079 GATTCGTTATGGTAACTTTAATC
259 GATTCGTTATGGTAACTTCAATC
* * * *
95047102 CGACCCACAGCAACTTCAGAGGTATAAGATTTGTAGCTTCATATTGCTCCACTGCAAATTTAGGA
1 CGACCCACTGCAACTTCAGAGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGC-AATTTAGGG
**
95047167 AGATAAGACTCGCTATGGTAGATTCAATCCAACCCACTGCAACTTCAGGGGTATAGGATTTGTAG
65 AGATAAGACTCGCTATGGTAGATTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAG
* * * * * * * *
95047232 CTTCATTTTACTCTATTACAAATTCAAGGAGATAAGTTTCGCTATGGTA-ACTTCAATCTGACCC
130 CTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATGATAGA-TTCAATCTGACCC
* * * *
95047296 ACTGCAACTTCAAGGGTATAGGATTTGTAGCTTCATC-TAGCTCCATTGCAACTTCTAGA-AGAT
194 ACTGCAACTTCAGGGGTATAGGATTTGTAGTTTCATCTTA-CTCTACTGCAACTT-TAGAGAGAT
* * *
95047359 AAGATTCGCTATGGTAACTTTAATT
257 AAGATTCGTTATGGTAACTTCAATC
* * *
95047384 CGACCCACTGCAACTTCA-AGG-GTAGAGAATTGTAGCTTCATCTTGCTCCATTGCAATTTTAGG
1 CGACCCACTGCAACTTCAGAGGTATAG-GATTTGTAGCTTCATCTTGCTCCACTGCAA-TTTAGG
* * * * *
95047447 GAGATAAGACTCGCTATGATAGATTCAATGTGACCTAATGCAACTTTAGGGGTATCA-GATTTGT
64 GAGATAAGACTCGCTATGGTAGATTCAATCTGACCCACTGCAACTTCAGGGGTAT-AGGATTTGT
* * * *
95047511 AACTTCATCTTGCTCCACTACAATTTTAGGGAAATAAGACTT-GCTAT-AGTAGATTCAATCTGA
128 AGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAGA-TTCGCTATGA-TAGATTCAATCTGA
* * * * * * *
95047574 CCCAGTGCAACTTTAAGGGTATGGGATTTGTAGCTTCATCTTGCTCTACTGCAACTTCA-AGGAG
191 CCCACTGCAACTTCAGGGGTATAGGATTTGTAGTTTCATCTTACTCTACTGCAACTTTAGA-GAG
*
95047638 TTAAGATTCGTTATGGTAACTTCAATC
255 ATAAGATTCGTTATGGTAACTTCAATC
* * * * * *
95047665 CGACCCAGTGAAACTTCATAGGAATAGGATTTGTAGCTTTATCTTACACTCCACTGCAACTTTAG
1 CGACCCACTGCAACTTCAGAGGTATAGGATTTGTAGCTTCATCTT--GCTCCACTGCAA-TTTAG
* * * * * * **
95047730 AGAGATAAGATTTGCTATGGTA-ACTTTAATTTGACCCACTGCAAATTCAGGGGTATATAATTTG
63 GGAGATAAGACTCGCTATGGTAGA-TTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTG
* * * ** *
95047794 TAACTTCATCTTGCTCTACTACAACTTTAGGGAGAT-AGAATTTACTATTG-TAGCTTCAATCTG
127 TAGCTTCATCTTGCTCCACTACAACTTCAGGGAGATAAG-ATTCGCTA-TGATAGATTCAATCTG
* * * *
95047857 ACCCATTACAACTTCAGGGGTATAGGATTTGTAGTTTCATCTTACTCTACTGCAACTTCAGGGAG
190 ACCCACTGCAACTTCAGGGGTATAGGATTTGTAGTTTCATCTTACTCTACTGCAACTTTAGAGAG
95047922 ATAAGATT
255 ATAAGATT
95047930 TGAGGTTTCA
Statistics
Matches: 933, Mismatches: 143, Indels: 63
0.82 0.13 0.06
Matches are distributed among these distances:
279 33 0.04
280 6 0.01
281 234 0.25
282 461 0.49
283 22 0.02
284 176 0.19
285 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (281 bp):
CGACCCACTGCAACTTCAGAGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAATTTAGGGA
GATAAGACTCGCTATGGTAGATTCAATCTGACCCACTGCAACTTCAGGGGTATAGGATTTGTAGC
TTCATCTTGCTCCACTACAACTTCAGGGAGATAAGATTCGCTATGATAGATTCAATCTGACCCAC
TGCAACTTCAGGGGTATAGGATTTGTAGTTTCATCTTACTCTACTGCAACTTTAGAGAGATAAGA
TTCGTTATGGTAACTTCAATC
Found at i:95051350 original size:53 final size:52
Alignment explanation
Indices: 95051257--95051360 Score: 131
Period size: 53 Copynumber: 2.0 Consensus size: 52
95051247 GGAATAGATA
* * *
95051257 TGATATGTGCACCCGTATAAGACCATAGCTGGCTATTGGCATCGGTATGATG
1 TGATATGTGCACCCGTATAAGACCATAGATGGATATTGGCATCGATATGATG
*
95051309 TGATAATGTGC-CTCCGTATAAGACCATATATGGGATA-TGGCATCGATATGAT
1 TGAT-ATGTGCAC-CCGTATAAGACCATAGAT-GGATATTGGCATCGATATGAT
95051361 ATGTGATCCG
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
52 5 0.11
53 36 0.80
54 4 0.09
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (52 bp):
TGATATGTGCACCCGTATAAGACCATAGATGGATATTGGCATCGATATGATG
Found at i:95056996 original size:12 final size:11
Alignment explanation
Indices: 95056975--95057038 Score: 58
Period size: 12 Copynumber: 5.5 Consensus size: 11
95056965 ATAAAATGAC
*
95056975 AATACTATAAT
1 AATACAATAAT
95056986 GAATACAATAAT
1 -AATACAATAAT
*
95056998 AAGA-AATAAT
1 AATACAATAAT
95057008 AATAACAATAAT
1 AAT-ACAATAAT
95057020 AATATTCAATTAAT
1 AATA--CAA-TAAT
95057034 AATAC
1 AATAC
95057039 TATATGATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
10 8 0.18
11 5 0.11
12 20 0.45
13 3 0.07
14 8 0.18
ACGTcount: A:0.59, C:0.08, G:0.03, T:0.30
Consensus pattern (11 bp):
AATACAATAAT
Found at i:95057073 original size:3 final size:3
Alignment explanation
Indices: 95056992--95057062 Score: 52
Period size: 3 Copynumber: 22.3 Consensus size: 3
95056982 TAATGAATAC
* * * *
95056992 AAT AAT AAGA AAT AAT AAT AAC AAT AAT AAT ATT CAATT AAT AAT ACT
1 AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT -AA-T AAT AAT AAT
* *
95057040 ATAT GAT AAT AAT GAT AAT AAT A
1 A-AT AAT AAT AAT AAT AAT AAT A
95057063 GTGAAATAAT
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
3 45 0.87
4 6 0.12
5 1 0.02
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:95058709 original size:43 final size:43
Alignment explanation
Indices: 95058383--95058697 Score: 330
Period size: 43 Copynumber: 7.3 Consensus size: 43
95058373 AAAATTAAAA
* * *
95058383 AAACGCCGCTAAAGACCATGACCTTTAACGGCACTTTTTTCGC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
* * ** *
95058426 AAACGCTGCTAAAGACCATGACCTTTAGCGGTGCTTTTCCCGC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
* * * ** *
95058469 AAATGTCGCTAAAGACCATGACCTTTAGCGGCACTTTTCCCGC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
* * *
95058512 AAACGCCGCTAAAAACCATGACCTTTAGTGGCGCTTTTGTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
* *
95058555 AAACGCTGCTAAAGACCATGACTTTTAGCGGCG-TTTTTTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
* * * * *
95058597 AAACGCCACTAAGGACCATGACATTTAGCAGCGCTTTTTTTCAA
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGC-TTTTTTCAC
* * * * *
95058641 AAACACCGCT-ATGTAACA-AACCTTTAGTGGCGCTTTTTTCAC
1 AAACGCCGCTAAAG-ACCATGACCTTTAGCGGCGCTTTTTTCAC
95058683 AAACGCCGCTAAAGA
1 AAACGCCGCTAAAGA
95058698 ATATAACCTT
Statistics
Matches: 227, Mismatches: 41, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
42 54 0.24
43 154 0.68
44 19 0.08
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
Found at i:95069359 original size:47 final size:47
Alignment explanation
Indices: 95069307--95069759 Score: 672
Period size: 47 Copynumber: 9.6 Consensus size: 47
95069297 GATAATTGTG
* *
95069307 ATGTGAATGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
95069354 ATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
95069401 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
95069448 ATGTGAAAGTATATATATATGTTATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
95069497 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
95069544 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCAATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
95069593 ATGTGAAAGTGTATATATGTGATAAAGCCTAATCGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
95069640 ATGTGAAAGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * ** * *
95069687 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCTAACGTGATGG
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
95069734 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTATATATATGTGATAAG
95069760 TCCCGAAGGG
Statistics
Matches: 372, Mismatches: 30, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 282 0.76
49 90 0.24
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:95069376 original size:96 final size:95
Alignment explanation
Indices: 95069307--95069759 Score: 556
Period size: 96 Copynumber: 4.8 Consensus size: 95
95069297 GATAATTGTG
* *
95069307 ATGTGAATGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATAT
* * * *
95069372 GTGATAAGGCCTAA-TAGCCGATGTGATGA
66 GTGATAAGGACTAATTGGACAATGTGATGA
95069401 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG--TATATAT
* * * *
95069466 ATGTTATAAGGCCTAA-TGGCCGATGTGATGA
64 ATGTGATAAGGACTAATTGGACAATGTGATGA
*
95069497 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATAT
*
95069562 ATGTGATAAGGCCTAA-T-GACCAATGTGATGA
64 ATGTGATAAGGACTAATTGGA-CAATGTGATGA
* * *
95069593 ATGTGAAAGTGTATATATGTGATAAAGCCTAATCGCCGATGTGATGAATGTGAAAGTATATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATAT
* * * *
95069658 GTGATGAGGCCTAA-TGGCCGATGTGATGA
66 GTGATAAGGACTAATTGGACAATGTGATGA
* * * * * ** * * * *
95069687 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCTAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATAT
95069752 GTGATAAG
66 GTGATAAG
95069760 TCCCGAAGGG
Statistics
Matches: 327, Mismatches: 26, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
94 148 0.45
95 2 0.01
96 176 0.54
98 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (95 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATAT
GTGATAAGGACTAATTGGACAATGTGATGA
Found at i:95069527 original size:143 final size:141
Alignment explanation
Indices: 95069307--95069759 Score: 672
Period size: 143 Copynumber: 3.2 Consensus size: 141
95069297 GATAATTGTG
*
95069307 ATGTGAATGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATATATAT
* *
95069372 GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGC
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGAC
*
95069437 CGATGTGATGA
131 CAATGTGATGA
* * *
95069448 ATGTGAAAGTATATATATATGTTATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAG--TATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATATAT
95069513 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATATGTGATAAGGCCTAA
95069578 TGACCAATGTGATGA
127 TGACCAATGTGATGA
* * *
95069593 ATGTGAAAGTGTATATATGTGATAAAGCCTAATCGCCGATGTGATGAATGTGAAAGTATATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATATATAT
* * * * * * *
95069658 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGAC
* * *
95069723 TAACGTGATGG
131 CAATGTGATGA
* *
95069734 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTATATATATGTGATAAG
95069760 TCCCGAAGGG
Statistics
Matches: 284, Mismatches: 24, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
141 62 0.22
143 176 0.62
145 46 0.16
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (141 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTATATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGAC
CAATGTGATGA
Found at i:95075871 original size:41 final size:41
Alignment explanation
Indices: 95075817--95075913 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 41
95075807 AATAATGGTA
* *
95075817 TTTTGCGGCGTTTTCAAT-AAAAATGTCATTATAGCTCAATT
1 TTTTGCGGCGTTTT-AATAAAAAATGCCATTATAGCTCAAGT
* * *
95075858 TTTTGCGGTGTTTTTATCAAAAAATGCCATTATAGCTTAAGT
1 TTTTGCGGCGTTTTAAT-AAAAAATGCCATTATAGCTCAAGT
**
95075900 TTTTGTAGCGTTTT
1 TTTTGCGGCGTTTT
95075914 TGGGAAAAAC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
40 2 0.04
41 13 0.28
42 31 0.67
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.45
Consensus pattern (41 bp):
TTTTGCGGCGTTTTAATAAAAAATGCCATTATAGCTCAAGT
Done.