Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 294 of 325
Found at i:95970585 original size:13 final size:13
Alignment explanation
Indices: 95970564--95970602 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
95970554 ATTTGATTGG
95970564 AAAATGAATTAAA
1 AAAATGAATTAAA
*
95970577 AAGATGAATTAAA
1 AAAATGAATTAAA
95970590 AAAATGAATTAAA
1 AAAATGAATTAAA
95970603 TTATGAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.23
Consensus pattern (13 bp):
AAAATGAATTAAA
Found at i:95970621 original size:10 final size:10
Alignment explanation
Indices: 95970606--95970635 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
95970596 AATTAAATTA
95970606 TGAATATGTG
1 TGAATATGTG
95970616 TGAATATGTG
1 TGAATATGTG
95970626 TGAATATGTG
1 TGAATATGTG
95970636 AAGTGGGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.40
Consensus pattern (10 bp):
TGAATATGTG
Found at i:95970819 original size:21 final size:21
Alignment explanation
Indices: 95970773--95970852 Score: 88
Period size: 21 Copynumber: 3.8 Consensus size: 21
95970763 TACCGATCAC
*
95970773 GCACTTCATGTGTCATATTCAG
1 GCACTTCATGTGTCGT-TTCAG
* *
95970795 GCACTTTATGTGTCGTTTTAG
1 GCACTTCATGTGTCGTTTCAG
* * *
95970816 GCACCTCGTATGTCGTTTCAG
1 GCACTTCATGTGTCGTTTCAG
*
95970837 GCACTTTATGTGTCGT
1 GCACTTCATGTGTCGT
95970853 ATACTACTTC
Statistics
Matches: 46, Mismatches: 12, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
21 32 0.70
22 14 0.30
ACGTcount: A:0.16, C:0.21, G:0.23, T:0.40
Consensus pattern (21 bp):
GCACTTCATGTGTCGTTTCAG
Found at i:95971938 original size:13 final size:13
Alignment explanation
Indices: 95971920--95971949 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
95971910 AGTTCACACA
*
95971920 AAAAAATAAATAT
1 AAAAAATAAAAAT
95971933 AAAAAATAAAAAT
1 AAAAAATAAAAAT
95971946 AAAA
1 AAAA
95971950 TTCTGGAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:95973964 original size:53 final size:53
Alignment explanation
Indices: 95973883--95974033 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
95973873 CTTACACGGT
* *
95973883 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
* *
95973938 TCACATTATACCGATGCCCTAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
95973991 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
95974034 GCACACTTAT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
52 1 0.01
53 79 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:95976743 original size:16 final size:16
Alignment explanation
Indices: 95976722--95976771 Score: 100
Period size: 16 Copynumber: 3.1 Consensus size: 16
95976712 ATACTTTAAA
95976722 CATACCATTTCATCAT
1 CATACCATTTCATCAT
95976738 CATACCATTTCATCAT
1 CATACCATTTCATCAT
95976754 CATACCATTTCATCAT
1 CATACCATTTCATCAT
95976770 CA
1 CA
95976772 ACAAACCAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (16 bp):
CATACCATTTCATCAT
Found at i:95977589 original size:43 final size:44
Alignment explanation
Indices: 95977509--95977623 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 44
95977499 TTGATGCCTT
* * * *
95977509 TGTCCCAGACAGGGTCTTACACGAAATC-GATTAACAATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAATCACAATAACAATGCCAA
*
95977552 TGTCCCAGACATGGTCTTACATGTAATCACAAT-ACAATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAATCACAATAACAATGCCAA
* *
95977595 TGCCCCAGACATGGTCTTACAGGTAATCA
1 TGTCCCAGACATGGTCTTACACGTAATCA
95977624 TTTCTCGATA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
43 62 0.97
44 2 0.03
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23
Consensus pattern (44 bp):
TGTCCCAGACATGGTCTTACACGTAATCACAATAACAATGCCAA
Found at i:95981787 original size:24 final size:24
Alignment explanation
Indices: 95981760--95981813 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
95981750 AATTATAGTC
* * *
95981760 AAATATACTGTGCTAATAAATATT
1 AAATATACTATACTAATAAATAAT
* *
95981784 AAATATATTATACTCATAAATAAT
1 AAATATACTATACTAATAAATAAT
95981808 AAATAT
1 AAATAT
95981814 TAAATAAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.52, C:0.07, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATACTATACTAATAAATAAT
Found at i:95986162 original size:24 final size:24
Alignment explanation
Indices: 95986134--95986180 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
95986124 AAACCTAATT
95986134 CTAATAA-TAGTCAAATATATTATC
1 CTAATAACT-GTCAAATATATTATC
*
95986158 CTAATAACTGTTAAATATATTAT
1 CTAATAACTGTCAAATATATTAT
95986181 ACTCATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.45, C:0.11, G:0.04, T:0.40
Consensus pattern (24 bp):
CTAATAACTGTCAAATATATTATC
Found at i:95986196 original size:24 final size:24
Alignment explanation
Indices: 95986146--95986197 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
95986136 AATAATAGTC
* * **
95986146 AAATATATTATCCTAATAACTGTT
1 AAATATATTATACTAATAAATACT
*
95986170 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
95986194 AAAT
1 AAAT
95986198 CTTCTAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:95992861 original size:15 final size:15
Alignment explanation
Indices: 95992837--95992885 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
95992827 ACCAATACCG
*
95992837 CCAATAACATTGCCA
1 CCAATAACATTGACA
* *
95992852 CCAATGACATTGGCA
1 CCAATAACATTGACA
95992867 CCAATAACATTGACA
1 CCAATAACATTGACA
95992882 CCAA
1 CCAA
95992886 CAGGTACACC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.41, C:0.31, G:0.10, T:0.18
Consensus pattern (15 bp):
CCAATAACATTGACA
Found at i:95992911 original size:24 final size:23
Alignment explanation
Indices: 95992881--95992959 Score: 95
Period size: 24 Copynumber: 3.3 Consensus size: 23
95992871 TAACATTGAC
* *
95992881 ACCAACAGGTACACCAATCGAGGA
1 ACCAACAGATCCACCAA-CGAGGA
*
95992905 ACCAACAGATCCACCAACCGAGAA
1 ACCAACAGATCCACCAA-CGAGGA
*
95992929 ACCAACAGATCCACCAACTGAGGT
1 ACCAACAGATCCACCAAC-GAGGA
95992953 ACCAACA
1 ACCAACA
95992960 TTGCCTTGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
23 1 0.02
24 47 0.98
ACGTcount: A:0.43, C:0.34, G:0.15, T:0.08
Consensus pattern (23 bp):
ACCAACAGATCCACCAACGAGGA
Found at i:96000908 original size:21 final size:22
Alignment explanation
Indices: 96000882--96000939 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
96000872 ATATCCTTGG
*
96000882 CTCACACGGGCGTGTGCCT-CT
1 CTCACACGGCCGTGTGCCTCCT
*
96000903 AC-CACACGACCGTGTGCCTCCT
1 -CTCACACGGCCGTGTGCCTCCT
96000925 CTCACACGGCCGTGT
1 CTCACACGGCCGTGT
96000940 TGACCCCCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 16 0.52
22 15 0.48
ACGTcount: A:0.14, C:0.41, G:0.24, T:0.21
Consensus pattern (22 bp):
CTCACACGGCCGTGTGCCTCCT
Found at i:96019460 original size:2 final size:2
Alignment explanation
Indices: 96019453--96019485 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
96019443 AAATGCCCAC
96019453 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
96019486 ACACACACAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:96019490 original size:2 final size:2
Alignment explanation
Indices: 96019485--96019516 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
96019475 CTCTCTCTCT
96019485 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
96019517 ACAATTACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:96031161 original size:45 final size:45
Alignment explanation
Indices: 96031106--96031305 Score: 251
Period size: 45 Copynumber: 4.5 Consensus size: 45
96031096 GGAATGCGAC
* *
96031106 ATCTGCTATCTTTGATCTGCTCCCCGTCAAATACAGAGATGCCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
96031151 ATCTGTTATCTTCGATCTGCTCCCCGTTTAATACAGAGACGCCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
** ** * *
96031196 ATCTACT-TCTTCAATCTGCTCCCCATCTAATACAGAGATGTCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
96031240 ATCTGTTATCTCTGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
*
96031285 ATCTGTCAT-TTTGGATCTGCT
1 ATCTGTTATCTTT-GATCTGCT
96031306 TCGATGTAAC
Statistics
Matches: 130, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
44 39 0.30
45 91 0.70
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (45 bp):
ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:96031241 original size:89 final size:89
Alignment explanation
Indices: 96031120--96031288 Score: 268
Period size: 89 Copynumber: 1.9 Consensus size: 89
96031110 GCTATCTTTG
* *
96031120 ATCTGCTCCCCGTCAAATACAGAGATGCCAAATCTGTTATCT-TCGATCTGCTCCCCGTTTAATA
1 ATCTGCTCCCCATCAAATACAGAGATGCCAAATCTGTTATCTCT-GATCTGCTCCCCGTCTAATA
96031184 CAGAGACGCCAAATCTACTTCTTCA
65 CAGAGACGCCAAATCTACTTCTTCA
* * *
96031209 ATCTGCTCCCCATCTAATACAGAGATGTCAAATCTGTTATCTCTGATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCATCAAATACAGAGATGCCAAATCTGTTATCTCTGATCTGCTCCCCGTCTAATAC
*
96031274 AGAGATGCCAAATCT
66 AGAGACGCCAAATCT
96031289 GTCATTTTGG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
89 72 0.99
90 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (89 bp):
ATCTGCTCCCCATCAAATACAGAGATGCCAAATCTGTTATCTCTGATCTGCTCCCCGTCTAATAC
AGAGACGCCAAATCTACTTCTTCA
Found at i:96031451 original size:78 final size:78
Alignment explanation
Indices: 96031318--96031610 Score: 399
Period size: 78 Copynumber: 3.8 Consensus size: 78
96031308 GATGTAACAC
* * * * *
96031318 ATGAAGGTCAGATCTACTATGTCTTCGATCTGTTTCCTGTCTAATACAGAGATGCCAATTCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
**
96031383 TGGATCCACTTCA
66 TGGATCTGCTTCA
* * * *
96031396 AGGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAAATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
96031460 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
96031474 ATGAAAGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
96031539 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* ** * **
96031552 ATGAAGGTCAGATCTGCGATGTCTTCGATCTGCTCTTCGTCGAATATGGAGATGCCAAA
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAA
96031611 CCTGTTTCTT
Statistics
Matches: 188, Mismatches: 25, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
77 2 0.01
78 184 0.98
79 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:96040322 original size:17 final size:17
Alignment explanation
Indices: 96040300--96040332 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
96040290 GATATGATAC
96040300 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
96040317 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
96040333 AATCAGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:96040333 original size:18 final size:17
Alignment explanation
Indices: 96040300--96040333 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
96040290 GATATGATAC
*
96040300 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
96040317 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
96040334 ATCAGGGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:96040623 original size:22 final size:21
Alignment explanation
Indices: 96040588--96040645 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
96040578 AAAAGGTATC
* *
96040588 TACAAATTAAATCTCTAAAAT
1 TACAAATCATATCTCTAAAAT
*
96040609 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAAAT
* *
96040632 TGCATATCATATCT
1 TACAAATCATATCT
96040646 AAGATTGCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAAAT
Found at i:96040660 original size:18 final size:19
Alignment explanation
Indices: 96040624--96040678 Score: 94
Period size: 18 Copynumber: 2.9 Consensus size: 19
96040614 AATCATATCT
96040624 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
96040643 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
96040661 TCTAAGATTACATATCAT
1 TCTAAGATTGCATATCAT
96040679 TGAAGATTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
18 17 0.50
19 17 0.50
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:96045629 original size:15 final size:16
Alignment explanation
Indices: 96045609--96045647 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
96045599 TTAGAAGTGC
96045609 TTTTTAAAATTATT-T
1 TTTTTAAAATTATTAT
96045624 TTTTT-AAATTATTAT
1 TTTTTAAAATTATTAT
96045639 TTTTTAAAA
1 TTTTTAAAA
96045648 AAAATTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.36
15 11 0.50
16 3 0.14
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTTAAAATTATTAT
Found at i:96045632 original size:14 final size:15
Alignment explanation
Indices: 96045609--96045646 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
96045599 TTAGAAGTGC
*
96045609 TTTTTAAAATTATT-
1 TTTTTTAAATTATTA
96045623 TTTTTTAAATTATTA
1 TTTTTTAAATTATTA
96045638 TTTTTTAAA
1 TTTTTTAAA
96045647 AAAAATTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 13 0.59
15 9 0.41
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTTTTAAATTATTA
Found at i:96049325 original size:111 final size:111
Alignment explanation
Indices: 96049131--96049353 Score: 437
Period size: 111 Copynumber: 2.0 Consensus size: 111
96049121 TACATAACCA
96049131 TAATCAACCAACTAACCAAACTCATGAAGTTCACTAGACTTAGGTACATGCCATTTACATCTCAA
1 TAATCAACCAACTAACCAAACTCATGAAGTTCACTAGACTTAGGTACATGCCATTTACATCTCAA
*
96049196 AATTCAAAAGAGCAATACAGTCACTAGAGTATAATACAATGGGGTT
66 AATTCAAAAGAGCAATACAATCACTAGAGTATAATACAATGGGGTT
96049242 TAATCAACCAACTAACCAAACTCATGAAGTTCACTAGACTTAGGTACATGCCATTTACATCTCAA
1 TAATCAACCAACTAACCAAACTCATGAAGTTCACTAGACTTAGGTACATGCCATTTACATCTCAA
96049307 AATTCAAAAGAGCAATACAATCACTAGAGTATAATACAATGGGGTT
66 AATTCAAAAGAGCAATACAATCACTAGAGTATAATACAATGGGGTT
96049353 T
1 T
96049354 TATGGTATGT
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 111 1.00
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.26
Consensus pattern (111 bp):
TAATCAACCAACTAACCAAACTCATGAAGTTCACTAGACTTAGGTACATGCCATTTACATCTCAA
AATTCAAAAGAGCAATACAATCACTAGAGTATAATACAATGGGGTT
Found at i:96052490 original size:131 final size:132
Alignment explanation
Indices: 96052224--96052506 Score: 433
Period size: 131 Copynumber: 2.2 Consensus size: 132
96052214 TTATTCATTC
* * *
96052224 AAAAATTCTTCAAAACGAAGGCGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATCCGCGGAATCGTGCCCTAACGTG
* *
96052289 TTGGGTTGCAATTTCGCGTTTGCTCGAAATAATCGAATATCACTTCAAAATTTCACTCATGCCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATACCTT
96052354 -T
131 CT
* *
96052355 TAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATCCGCGGAATCGTGCCCTAATGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATCCGCGGAATCGTGCCCTAACGTG
* * * * *
96052420 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAGTATCCCTTCAAAATTTTATTCATATCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATACCTT
96052485 CT
131 CT
* *
96052487 AAAAATTATTTAAAACGAAG
1 AAAAATTCTTCAAAACGAAG
96052507 GCAATATTTG
Statistics
Matches: 136, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
131 118 0.87
132 18 0.13
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32
Consensus pattern (132 bp):
AAAAATTCTTCAAAACGAAGACGAGATTCGATATTTAGCAATCCGCGGAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATACCTT
CT
Found at i:96052536 original size:131 final size:131
Alignment explanation
Indices: 96052224--96052579 Score: 396
Period size: 131 Copynumber: 2.7 Consensus size: 131
96052214 TTATTCATTC
* * * * * *
96052224 AAAAATTCTTCAAAACGAAGGCGAGATTCGATATTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTATTCAAAACGAAGACAAGATTCGACATTTGACAATTCGCGGAATCGTGCCCTAATGTG
* *
96052289 TTGGGTTGCAATTTCGCGTTTGCTCGAAATAATCGAATATCACTTCAAAATTTCACTCATGCCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATACCTT
96052354 T
131 T
* * * * *
96052355 TAAAATTCTTCAAAACGAAGACGAGATTCGATATTT-AGCAATCCGCGGAATCGTGCCCTAATGT
1 AAAAATTATTCAAAACGAAGACAAGATTCGACATTTGA-CAATTCGCGGAATCGTGCCCTAATGT
* * * * *
96052419 GTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAGTATCCCTTCAAAATTTTATTCATATCT
65 GTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATACCT
96052484 TCT
130 T-T
* * * * * * *
96052487 AAAAATTATTTAAAACGAAGGCAATATTTGGCGTTTGACAATTCG-GGAATCATGCCCT-ATCGT
1 AAAAATTATTCAAAACGAAGACAAGATTCGACATTTGACAATTCGCGGAATCGTGCCCTAAT-GT
* * *
96052550 GCTGGGTTGTGAA-TTCTCGTTTGCTCAAAA
65 GTTGGGTTG-CAATTTCGCGTTTGCTCAAAA
96052580 CGATCGAACA
Statistics
Matches: 193, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
130 2 0.01
131 155 0.80
132 35 0.18
133 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (131 bp):
AAAAATTATTCAAAACGAAGACAAGATTCGACATTTGACAATTCGCGGAATCGTGCCCTAATGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATACCTT
T
Found at i:96057416 original size:3 final size:3
Alignment explanation
Indices: 96057410--96057434 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
96057400 AACAGAAAAA
96057410 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
96057435 GAGGATCATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:96059042 original size:37 final size:37
Alignment explanation
Indices: 96058987--96059059 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
96058977 ACTTCACCAT
* *
96058987 ACGGGCACAAGGTCGAGACACACGCCTTTGTGCTCAC
1 ACGGCCACAAGGTCGAGACACACGCCTTTATGCTCAC
*
96059024 ACGGCCACAAGGTCGAGACACACGTCTTTATGCTCA
1 ACGGCCACAAGGTCGAGACACACGCCTTTATGCTCA
96059060 ACCGTGTGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.26, C:0.32, G:0.25, T:0.18
Consensus pattern (37 bp):
ACGGCCACAAGGTCGAGACACACGCCTTTATGCTCAC
Found at i:96059989 original size:40 final size:40
Alignment explanation
Indices: 96059938--96060026 Score: 110
Period size: 40 Copynumber: 2.2 Consensus size: 40
96059928 TCTCAGTATT
*
96059938 GCACACTTAGTGCC-TCTTATGGCCGAAGCTA-TTCCAACTC
1 GCACACTTAGTGCCAT-TTATAGCCGAAGCTATTTCCAAC-C
* * *
96059978 GCACACTTAGTGCCATTTGTAGTCGAAGCTATTTCGAACC
1 GCACACTTAGTGCCATTTATAGCCGAAGCTATTTCCAACC
96060018 GCACACTTA
1 GCACACTTA
96060027 ATGTCGCACA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
40 36 0.84
41 7 0.16
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (40 bp):
GCACACTTAGTGCCATTTATAGCCGAAGCTATTTCCAACC
Found at i:96069183 original size:17 final size:16
Alignment explanation
Indices: 96069157--96069191 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
96069147 CCACACGGGC
*
96069157 TGAGCACACGTCCATG
1 TGAGCACACGCCCATG
96069173 TGAGCCACACGCCCATG
1 TGAG-CACACGCCCATG
96069190 TG
1 TG
96069192 GTAGCCCGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.23, C:0.34, G:0.26, T:0.17
Consensus pattern (16 bp):
TGAGCACACGCCCATG
Found at i:96075895 original size:11 final size:11
Alignment explanation
Indices: 96075874--96075907 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
96075864 TTTCACTCCC
96075874 TTCTCTTTTCTT
1 TTCT-TTTTCTT
96075886 TTCTTTTTCTT
1 TTCTTTTTCTT
*
96075897 TTCTATTTCTT
1 TTCTTTTTCTT
96075908 CCCCTATTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (11 bp):
TTCTTTTTCTT
Found at i:96076093 original size:19 final size:19
Alignment explanation
Indices: 96076069--96076118 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
96076059 TTTTTCCCTC
96076069 ATTTTTAGTTATTTATT-TT
1 ATTTTTA-TTATTTATTATT
*
96076088 ATTTTTCTT-TATTATTATT
1 ATTTTTATTAT-TTATTATT
96076107 ATTTTTATTATT
1 ATTTTTATTATT
96076119 GGTCCATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
17 1 0.04
18 7 0.27
19 17 0.65
20 1 0.04
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (19 bp):
ATTTTTATTATTTATTATT
Found at i:96076100 original size:15 final size:15
Alignment explanation
Indices: 96076080--96076118 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
96076070 TTTTTAGTTA
*
96076080 TTTATT-TTATTTTT
1 TTTATTATTATTATT
96076094 CTTTATTATTATTATT
1 -TTTATTATTATTATT
96076110 TTTATTATT
1 TTTATTATT
96076119 GGTCCATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 15 0.68
16 7 0.32
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTATTATTATTATT
Found at i:96076104 original size:3 final size:3
Alignment explanation
Indices: 96076096--96076163 Score: 59
Period size: 3 Copynumber: 22.7 Consensus size: 3
96076086 TTATTTTTCT
* * * * *
96076096 TTA TTA TTA TTA TTT TTA TTA TTGG TCCA -TA TTA TTA TTA TCA TCA
1 TTA TTA TTA TTA TTA TTA TTA TT-A T-TA TTA TTA TTA TTA TTA TTA
96076142 TTA TTA TTA -TA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
96076164 TCTTTATCAT
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
2 3 0.06
3 49 0.92
4 1 0.02
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:96076105 original size:25 final size:25
Alignment explanation
Indices: 96076077--96076188 Score: 66
Period size: 25 Copynumber: 4.2 Consensus size: 25
96076067 TCATTTTTAG
96076077 TTATTTATTTTATTTTTCTTTATTA
1 TTATTTATTTTATTTTTCTTTATTA
**
96076102 TTA-TTATTTTTATTATTGGTCCATATTA
1 TTATTTA-TTTTATT-TT--TCTTTATTA
* * *
96076130 TTATTATCATCATTATTATTATATTATTA
1 TTATT-T-AT-TTTATTTTTCT-TTATTA
* *
96076159 TTATTT-CTTTATCATTTCTTTATTA
1 TTATTTATTTTAT-TTTTCTTTATTA
96076184 TTATT
1 TTATT
96076189 GTGTGTGGTT
Statistics
Matches: 65, Mismatches: 12, Indels: 20
0.67 0.12 0.21
Matches are distributed among these distances:
24 3 0.05
25 25 0.38
26 5 0.08
28 12 0.18
29 11 0.17
30 3 0.05
31 6 0.09
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.66
Consensus pattern (25 bp):
TTATTTATTTTATTTTTCTTTATTA
Found at i:96076117 original size:28 final size:27
Alignment explanation
Indices: 96076077--96076188 Score: 75
Period size: 28 Copynumber: 4.1 Consensus size: 27
96076067 TCATTTTTAG
*
96076077 TTATTTATTTTATTTTTCTTTATTATTA
1 TTATTT-TTTTATTTTTCTATATTATTA
** *
96076105 TTATTTTTATTATTGGTCCATATTATTA
1 TTATTTTT-TTATTTTTCTATATTATTA
* ** *
96076133 TTATCATCATTA-TTAT-TATATTATTA
1 TTAT-TTTTTTATTTTTCTATATTATTA
* * *
96076159 TTATTTCTTTATCATTTCTTTATTATTA
1 TTATTTTTTTAT-TTTTCTATATTATTA
96076187 TT
1 TT
96076189 GTGTGTGGTT
Statistics
Matches: 64, Mismatches: 15, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
25 5 0.08
26 13 0.20
27 6 0.09
28 39 0.61
29 1 0.02
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.66
Consensus pattern (27 bp):
TTATTTTTTTATTTTTCTATATTATTA
Found at i:96076170 original size:11 final size:11
Alignment explanation
Indices: 96076156--96076185 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
96076146 TATTATATTA
96076156 TTATTATTTCT
1 TTATTATTTCT
*
96076167 TTATCATTTCT
1 TTATTATTTCT
96076178 TTATTATT
1 TTATTATT
96076186 ATTGTGTGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.70
Consensus pattern (11 bp):
TTATTATTTCT
Found at i:96077866 original size:6 final size:6
Alignment explanation
Indices: 96077851--96077930 Score: 124
Period size: 6 Copynumber: 13.3 Consensus size: 6
96077841 ATTGAGTCCA
* * * *
96077851 TTTATC TTTATG TTTATT TTTATT TTTATT TTTATC TTTATC TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
96077899 TTTATT TTTATT TTTATT TTTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TT
96077931 GTCTTTATAT
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 70 1.00
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:96077943 original size:18 final size:17
Alignment explanation
Indices: 96077863--96077943 Score: 74
Period size: 18 Copynumber: 4.6 Consensus size: 17
96077853 TATCTTTATG
96077863 TTTAT-TTTTATTTTTA
1 TTTATATTTTATTTTTA
* *
96077879 TTTTTATCTTTATCTTTA
1 TTTATAT-TTTATTTTTA
*
96077897 TTTTTATTTTTATTTTTA
1 TTTATA-TTTTATTTTTA
* *
96077915 TTTTTATTTTTATTTTGTC
1 TTTATA-TTTTATTTT-TA
96077934 TTTATATTTT
1 TTTATATTTT
96077944 GAACTCTATT
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
16 4 0.07
17 1 0.02
18 44 0.79
19 7 0.12
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.79
Consensus pattern (17 bp):
TTTATATTTTATTTTTA
Found at i:96082244 original size:63 final size:63
Alignment explanation
Indices: 96082145--96082271 Score: 218
Period size: 63 Copynumber: 2.0 Consensus size: 63
96082135 ATCTCCGTCA
*
96082145 GGATCATCTCCGACTGGTCTTAATGGTGCACATGAGCCTAGTCCTCTAACTAGTGATACTGTC
1 GGATCATCTCCGACTGGTCTTAATAGTGCACATGAGCCTAGTCCTCTAACTAGTGATACTGTC
* * *
96082208 GGATCGTCTTCGACTGGTCTTACTAGTGCACATGAGCCTAGTCCTCTAACTAGTGATACTGTC
1 GGATCATCTCCGACTGGTCTTAATAGTGCACATGAGCCTAGTCCTCTAACTAGTGATACTGTC
96082271 G
1 G
96082272 AGTCCTTATG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (63 bp):
GGATCATCTCCGACTGGTCTTAATAGTGCACATGAGCCTAGTCCTCTAACTAGTGATACTGTC
Found at i:96092099 original size:34 final size:35
Alignment explanation
Indices: 96091989--96092104 Score: 146
Period size: 35 Copynumber: 3.3 Consensus size: 35
96091979 ATAGCTTTAG
* * *
96091989 TTTTTT-CCCAAATCAGTTTCTCTGAAATCCCTTAC
1 TTTTTTCCCCAAATCATTTTC-CCGAAATCCCTTAA
* *
96092024 TTTTTTCCCCAATTCATTTTCCCGAAATCCCTTAG
1 TTTTTTCCCCAAATCATTTTCCCGAAATCCCTTAA
* *
96092059 TCTTTTCCCCAAATCATTTTCCC-CAATCCCTTAA
1 TTTTTTCCCCAAATCATTTTCCCGAAATCCCTTAA
96092093 TTTTTTCCCCAA
1 TTTTTTCCCCAA
96092105 TGTCTGCTAC
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
34 20 0.28
35 39 0.55
36 12 0.17
ACGTcount: A:0.22, C:0.33, G:0.03, T:0.42
Consensus pattern (35 bp):
TTTTTTCCCCAAATCATTTTCCCGAAATCCCTTAA
Found at i:96092204 original size:24 final size:24
Alignment explanation
Indices: 96092131--96092205 Score: 87
Period size: 24 Copynumber: 3.1 Consensus size: 24
96092121 ATCAATAGTC
* *
96092131 CTCTGCCGCATCGCCATCGGCAGTT
1 CTCTACCGCATCGCCATCGACAG-T
* *
96092156 TTCTACCGCATCGCCATCAACAGT
1 CTCTACCGCATCGCCATCGACAGT
* *
96092180 CTCTACCGCATCGCTATCGATAGT
1 CTCTACCGCATCGCCATCGACAGT
96092204 CT
1 CT
96092206 TTTGCTGTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
24 23 0.55
25 19 0.45
ACGTcount: A:0.19, C:0.37, G:0.17, T:0.27
Consensus pattern (24 bp):
CTCTACCGCATCGCCATCGACAGT
Found at i:96097291 original size:37 final size:38
Alignment explanation
Indices: 96097218--96097295 Score: 113
Period size: 39 Copynumber: 2.1 Consensus size: 38
96097208 GAGCTTGTTT
**
96097218 TATATATGGTACCTTTGATCACTATCTTTTTTAGATTTC
1 TATATATGGTACCTTTGATCACTATC-TTTAGAGATTTC
*
96097257 TATATATGGTTCCTTTGATCACTATC-TTAGAGATTTC
1 TATATATGGTACCTTTGATCACTATCTTTAGAGATTTC
96097294 TA
1 TA
96097296 GGAGAAATCT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 11 0.31
39 25 0.69
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.49
Consensus pattern (38 bp):
TATATATGGTACCTTTGATCACTATCTTTAGAGATTTC
Found at i:96100824 original size:25 final size:25
Alignment explanation
Indices: 96100789--96100845 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
96100779 GGACACATCA
*
96100789 CAGCTCGCATGAGTTTTCT-GTTATT
1 CAGCTCACATGA-TTTTCTCGTTATT
*
96100814 TAGCTCACATGATTTTCTCGTTATT
1 CAGCTCACATGATTTTCTCGTTATT
96100839 CAGCTCA
1 CAGCTCA
96100846 GAAGAGCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 6 0.21
25 22 0.79
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (25 bp):
CAGCTCACATGATTTTCTCGTTATT
Found at i:96103954 original size:18 final size:18
Alignment explanation
Indices: 96103931--96103965 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
96103921 CCAACAGAGT
96103931 GAGGATGAAT-CTAATGAA
1 GAGGATG-ATCCTAATGAA
96103949 GAGGATGATCCTAATGA
1 GAGGATGATCCTAATGA
96103966 TGCGGGCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.40, C:0.09, G:0.29, T:0.23
Consensus pattern (18 bp):
GAGGATGATCCTAATGAA
Found at i:96107142 original size:13 final size:14
Alignment explanation
Indices: 96107126--96107154 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
96107116 TTTTAAATAT
96107126 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
96107139 TTATAATGGTTTAA
1 TTATAATGGTTTAA
96107153 TT
1 TT
96107155 CATCGTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:96107911 original size:43 final size:43
Alignment explanation
Indices: 96107863--96108004 Score: 169
Period size: 43 Copynumber: 3.3 Consensus size: 43
96107853 GCGTTTTCTC
*
96107863 ACAAACGCCGCTATAAAACATGGTCTTTAGCGGCACTTTTACT
1 ACAAACGCCGCTATAAAACATGATCTTTAGCGGCACTTTTACT
* **
96107906 ACAAACGCCGCTA-AAGAACATGATTTTTAGTAGCACTTTTACT
1 ACAAACGCCGCTATAA-AACATGATCTTTAGCGGCACTTTTACT
* * * * **
96107949 ACAAACGCCGTTATAGAACATCATCTTTAACGGTGCTTTTACT
1 ACAAACGCCGCTATAAAACATGATCTTTAGCGGCACTTTTACT
*
96107992 AAAAACGCCGCTA
1 ACAAACGCCGCTA
96108005 AAGATCATGT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 2 0.02
43 79 0.96
44 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (43 bp):
ACAAACGCCGCTATAAAACATGATCTTTAGCGGCACTTTTACT
Found at i:96108023 original size:43 final size:43
Alignment explanation
Indices: 96107898--96108023 Score: 108
Period size: 43 Copynumber: 2.9 Consensus size: 43
96107888 TTTAGCGGCA
* * * * *** **
96107898 CTTTTACTACAAACGCCGCTAAAGAACATGATTTTTAGTAGCA
1 CTTTTACTAAAAACGCCGCTAAAGAACATCATCTATAACGGTG
* * * *
96107941 CTTTTACTACAAACGCCGTTATAGAACATCATCTTTAACGGTG
1 CTTTTACTAAAAACGCCGCTAAAGAACATCATCTATAACGGTG
* **
96107984 CTTTTACTAAAAACGCCGCTAAAGATCATGTTCTATAACG
1 CTTTTACTAAAAACGCCGCTAAAGAACATCATCTATAACG
96108024 TTGTTTTTTG
Statistics
Matches: 67, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.31
Consensus pattern (43 bp):
CTTTTACTAAAAACGCCGCTAAAGAACATCATCTATAACGGTG
Found at i:96113760 original size:18 final size:19
Alignment explanation
Indices: 96113727--96113766 Score: 64
Period size: 18 Copynumber: 2.1 Consensus size: 19
96113717 CAAATTAGTA
96113727 AAAATAATGCATTTTTAATT
1 AAAATAAT-CATTTTTAATT
96113747 AAAATAAT-ATTTTTAATT
1 AAAATAATCATTTTTAATT
96113765 AA
1 AA
96113767 GTTTCCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 12 0.60
20 8 0.40
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (19 bp):
AAAATAATCATTTTTAATT
Found at i:96115299 original size:87 final size:85
Alignment explanation
Indices: 96115183--96115491 Score: 299
Period size: 87 Copynumber: 3.6 Consensus size: 85
96115173 GCTGTTTTTT
* * *
96115183 TTTTTTTTTGCATTC-ATTTAGGTACTTGAACTTTCAAGATGCATAAAAAATACTCCCAAATTTT
1 TTTTTTTTTGCACTCAATTGA-GTACTTGAACTTTCAAAATGCATAAAAAATACTCCCAAATTTT
96115247 CAAAAAAACAATTAAGCCCCTAC
65 -AAAAAAA-AATTAAGCCCCTAC
* * * *
96115270 TATTTTTTTGCACTCAATTGAGTACTTGAACTTTCAAAATGCATCAAAAAGACTTCCAAACTTTT
1 TTTTTTTTTGCACTCAATTGAGTACTTGAACTTTCAAAATGCATAAAAAATACTCCCAAA-TTTT
* **
96115335 --AAAAAAA--AA-CCCTTGT
65 AAAAAAAAATTAAGCCCCTAC
* * * * *
96115351 TTTTTTTTTGCACTCATTTGGGTACTTGAACTTTCAAAATACATAAAAAAATGCTCTCAAATCTT
1 TTTTTTTTTGCACTCAATTGAGTACTTGAACTTTCAAAATGCAT-AAAAAATACTCCCAAA--TT
*
96115416 TTAAAGAAAATAATTAAGCCTCTAC
63 TTAAA-AAAA-AATTAAGCCCCTAC
* * *
96115441 TTTTTTTTTTGCATTCAATTG-GACACTTGAACTTTCAAAATGTATAAAAAA
1 -TTTTTTTTTGCACTCAATTGAG-TACTTGAACTTTCAAAATGCATAAAAAA
96115492 GACCCTTAAA
Statistics
Matches: 181, Mismatches: 28, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
81 44 0.24
82 13 0.07
83 5 0.03
84 2 0.01
85 6 0.03
86 4 0.02
87 50 0.28
88 8 0.04
89 2 0.01
90 10 0.06
91 37 0.20
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (85 bp):
TTTTTTTTTGCACTCAATTGAGTACTTGAACTTTCAAAATGCATAAAAAATACTCCCAAATTTTA
AAAAAAAATTAAGCCCCTAC
Found at i:96115515 original size:172 final size:167
Alignment explanation
Indices: 96115182--96115494 Score: 439
Period size: 172 Copynumber: 1.8 Consensus size: 167
96115172 AGCTGTTTTT
* * *
96115182 TTTTTTTTTTGCATTCATTTAGGTACTTGAACTTTCAAGATGCATAAAAAATACTCCCAAATTTT
1 TTTTTTTTTTGCACTCATTTAGGTACTTGAACTTTCAAAATACATAAAAAATACTCCCAAATTTT
*
96115247 CAAAAAAACAATTAAGCCCCTACTATTTTTTTGCACTCAATTGAGTACTTGAACTTTCAAAATGC
66 CAAAAAAACAATTAAGCCCCTACTATTTTTTTGCACTCAATTGAGCACTTGAACTTTCAAAATGC
*
96115312 ATCAAAAAGACTTCCAAACTTTTAAAAAAAAACCCTTG
131 ATAAAAAAGACTT-CAAACTTTTAAAAAAAAACCCTTG
* * *
96115350 TTTTTTTTTTGCACTCATTTGGGTACTTGAACTTTCAAAATACATAAAAAAATGCTCTCAAATCT
1 TTTTTTTTTTGCACTCATTTAGGTACTTGAACTTTCAAAATACAT-AAAAAATACTCCCAAAT-T
* * * * *
96115415 TTTAAAGAAAATAATTAAGCCTCTACTTTTTTTTTTGCATTCAATTG-GACACTTGAACTTTCAA
64 TTCAAA-AAAACAATTAAGCCCCTAC-TATTTTTTTGCACTCAATTGAG-CACTTGAACTTTCAA
*
96115479 AATGTATAAAAAAGAC
126 AATGCATAAAAAAGAC
96115495 CCTTAAACTT
Statistics
Matches: 126, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
168 41 0.33
169 15 0.12
170 6 0.05
171 18 0.14
172 46 0.37
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (167 bp):
TTTTTTTTTTGCACTCATTTAGGTACTTGAACTTTCAAAATACATAAAAAATACTCCCAAATTTT
CAAAAAAACAATTAAGCCCCTACTATTTTTTTGCACTCAATTGAGCACTTGAACTTTCAAAATGC
ATAAAAAAGACTTCAAACTTTTAAAAAAAAACCCTTG
Found at i:96115526 original size:91 final size:90
Alignment explanation
Indices: 96115350--96115535 Score: 198
Period size: 91 Copynumber: 2.0 Consensus size: 90
96115340 AAAACCCTTG
* ** *
96115350 TTTTTTTTTTGCACTCATTTGGGTACTTGAACTTTCAAAATACATAAAAAAATGCTCTCAAATCT
1 TTTTTTTTTTGCACTCAATTGGACACTTGAACTTTCAAAATACATAAAAAAA-GCCCTCAAATCT
** *
96115415 TTTAAAGAAAATAATTAAGCCTCTAC
65 TTTAAAGAAAATAACAAAGCCCCTAC
* ** *
96115441 TTTTTTTTTTGCATTCAATTGGACACTTGAACTTTCAAAATGTAT-AAAAAAGACCCTTAAA-CT
1 TTTTTTTTTTGCACTCAATTGGACACTTGAACTTTCAAAATACATAAAAAAAG-CCCTCAAATC-
*
96115504 TTTTCAAA-AAAAGTAACAAAGCCCCTGC
64 TTTT-AAAGAAAA-TAACAAAGCCCCTAC
96115532 TTTT
1 TTTT
96115536 ATTAAAAATT
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
89 2 0.03
90 20 0.25
91 57 0.72
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (90 bp):
TTTTTTTTTTGCACTCAATTGGACACTTGAACTTTCAAAATACATAAAAAAAGCCCTCAAATCTT
TTAAAGAAAATAACAAAGCCCCTAC
Found at i:96115970 original size:27 final size:26
Alignment explanation
Indices: 96115930--96116012 Score: 91
Period size: 26 Copynumber: 3.2 Consensus size: 26
96115920 TTGTTAATTT
96115930 TTTTATGATTTTTATAAAATTTTACAATA
1 TTTTAT-ATTTTTATAAAATTTT--AATA
* *
96115959 TTTTAT-TTTTTA-AAAATTTTATTT
1 TTTTATATTTTTATAAAATTTTAATA
96115983 TTTTATATTTTTATTAAAA-TTTAATA
1 TTTTATATTTTTA-TAAAATTTTAATA
96116009 TTTT
1 TTTT
96116013 TCTAATTATT
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
24 8 0.17
25 6 0.13
26 17 0.36
27 10 0.21
29 6 0.13
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (26 bp):
TTTTATATTTTTATAAAATTTTAATA
Found at i:96115991 original size:26 final size:26
Alignment explanation
Indices: 96115929--96116013 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 26
96115919 GTTGTTAATT
*
96115929 TTTTTATGA-TTTTTATAAAATTTTACAA
1 TTTTTAT-ATTTTTTA-AAAATTTTA-TA
* *
96115957 TATTT-TATTTTTTAAAAATTTTATT
1 TTTTTATATTTTTTAAAAATTTTATA
* *
96115982 TTTTTATATTTTTATTAAAATTTAATA
1 TTTTTATATTTTT-TAAAAATTTTATA
96116009 TTTTT
1 TTTTT
96116014 CTAATTATTA
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
25 4 0.09
26 17 0.36
27 22 0.47
28 4 0.09
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (26 bp):
TTTTTATATTTTTTAAAAATTTTATA
Found at i:96116858 original size:7 final size:7
Alignment explanation
Indices: 96116846--96116880 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
96116836 TAATTAATTT
96116846 AATTTAA
1 AATTTAA
96116853 AATTTAA
1 AATTTAA
96116860 AATTTAA
1 AATTTAA
96116867 AATTTAA
1 AATTTAA
96116874 AATTTAA
1 AATTTAA
96116881 TTCCTAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
AATTTAA
Found at i:96116859 original size:21 final size:22
Alignment explanation
Indices: 96116830--96116882 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
96116820 AGCAAAATAT
96116830 AAATATTAATTAATTT-AATTTA
1 AAAT-TTAATTAATTTAAATTTA
96116852 AAATTTAA--AATTTAAAATTTA
1 AAATTTAATTAATTT-AAATTTA
96116873 AAATTTAATT
1 AAATTTAATT
96116883 CCTAAAAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
19 5 0.19
21 18 0.67
22 4 0.15
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
AAATTTAATTAATTTAAATTTA
Found at i:96121670 original size:30 final size:32
Alignment explanation
Indices: 96121613--96121686 Score: 93
Period size: 30 Copynumber: 2.4 Consensus size: 32
96121603 GGCCTAATTT
96121613 AAATTTTC-AAAAAATCTAGAGGATTTAATGA
1 AAATTTTCAAAAAAATCTAGAGGATTTAATGA
* * *
96121644 GAATTTTCAAAAAAAT-TTGAGG-TTTAATTA
1 AAATTTTCAAAAAAATCTAGAGGATTTAATGA
96121674 AAATTTT-AAAAAA
1 AAATTTTCAAAAAA
96121687 TTTAAGGGCT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
29 6 0.16
30 13 0.34
31 12 0.32
32 7 0.18
ACGTcount: A:0.50, C:0.04, G:0.11, T:0.35
Consensus pattern (32 bp):
AAATTTTCAAAAAAATCTAGAGGATTTAATGA
Found at i:96126460 original size:17 final size:18
Alignment explanation
Indices: 96126438--96126494 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
96126428 CAAAAATTCT
* *
96126438 AAAATT-TATATTTTAAA
1 AAAATTATAAATTTCAAA
96126455 AAAATTATAAATTTCAAA
1 AAAATTATAAATTTCAAA
* * *
96126473 AATATATAAAAATTTTAAA
1 AAAAT-TATAAATTTCAAA
96126492 AAA
1 AAA
96126495 TAATTTTAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
17 6 0.19
18 13 0.41
19 13 0.41
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAATTATAAATTTCAAA
Found at i:96126501 original size:13 final size:13
Alignment explanation
Indices: 96126483--96126511 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
96126473 AATATATAAA
96126483 AATTTTAAAAAAT
1 AATTTTAAAAAAT
96126496 AATTTTAAAAAAT
1 AATTTTAAAAAAT
96126509 AAT
1 AAT
96126512 AATTTTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AATTTTAAAAAAT
Found at i:96130101 original size:16 final size:16
Alignment explanation
Indices: 96130080--96130110 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96130070 AACTTCTTGT
96130080 ATTTCATGTAATATTC
1 ATTTCATGTAATATTC
*
96130096 ATTTCATGTCATATT
1 ATTTCATGTAATATT
96130111 TCTATATCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.13, G:0.06, T:0.52
Consensus pattern (16 bp):
ATTTCATGTAATATTC
Found at i:96135342 original size:18 final size:19
Alignment explanation
Indices: 96135294--96135345 Score: 79
Period size: 19 Copynumber: 2.8 Consensus size: 19
96135284 TGTTTTACTA
*
96135294 TCTAAATTAATAATTCCAT
1 TCTAAATTATTAATTCCAT
96135313 TCTAAATTATTAATTCCAT
1 TCTAAATTATTAATTCCAT
*
96135332 TC-AATTTATTAATT
1 TCTAAATTATTAATT
96135346 TAGATAAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
18 11 0.35
19 20 0.65
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.48
Consensus pattern (19 bp):
TCTAAATTATTAATTCCAT
Found at i:96135668 original size:41 final size:41
Alignment explanation
Indices: 96135580--96135764 Score: 221
Period size: 41 Copynumber: 4.5 Consensus size: 41
96135570 AACCTTGAGT
* * *
96135580 CTAGCAAGTTTCGTGCCGGTGAGTTCATATCAAGCGT-TGTGC
1 CTAGCAGGCTTCGTGCCGGTGA-TTTATATCAAGC-TCTGTGC
* *
96135622 TTAGCAGGCTTCGTGCCGGTGATTTATATCAGGCTCTGTGC
1 CTAGCAGGCTTCGTGCCGGTGATTTATATCAAGCTCTGTGC
* * *
96135663 CTAGCAGGCTT-GTGCCAGTGATTTATGTCAAGCTGTGTGC
1 CTAGCAGGCTTCGTGCCGGTGATTTATATCAAGCTCTGTGC
* * **
96135703 TTAGCAGGCTCCGTGCTAGTGATTTATATCAAGCTCTGTGC
1 CTAGCAGGCTTCGTGCCGGTGATTTATATCAAGCTCTGTGC
*
96135744 CTAGCAGGCTTTGTGCCGGTG
1 CTAGCAGGCTTCGTGCCGGTG
96135765 TAATTGTATT
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
40 35 0.29
41 67 0.55
42 19 0.16
ACGTcount: A:0.17, C:0.22, G:0.29, T:0.32
Consensus pattern (41 bp):
CTAGCAGGCTTCGTGCCGGTGATTTATATCAAGCTCTGTGC
Found at i:96135704 original size:81 final size:82
Alignment explanation
Indices: 96135609--96135760 Score: 245
Period size: 81 Copynumber: 1.9 Consensus size: 82
96135599 TGAGTTCATA
* * *
96135609 TCAAGCGTTGTGCTTAGCAGGCTTCGTGCCGGTGATTTATATCAGGCTCTGTGCCTAGCAGGC-T
1 TCAAGCGTTGTGCTTAGCAGGCTCCGTGCCAGTGATTTATATCAAGCTCTGTGCCTAGCAGGCTT
96135673 TGTGCCAGTGATTTATG
66 TGTGCCAGTGATTTATG
*
96135690 TCAAGC-TGTGTGCTTAGCAGGCTCCGTGCTAGTGATTTATATCAAGCTCTGTGCCTAGCAGGCT
1 TCAAGCGT-TGTGCTTAGCAGGCTCCGTGCCAGTGATTTATATCAAGCTCTGTGCCTAGCAGGCT
96135754 TTGTGCC
65 TTGTGCC
96135761 GGTGTAATTG
Statistics
Matches: 65, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
80 1 0.02
81 57 0.88
82 7 0.11
ACGTcount: A:0.16, C:0.22, G:0.28, T:0.33
Consensus pattern (82 bp):
TCAAGCGTTGTGCTTAGCAGGCTCCGTGCCAGTGATTTATATCAAGCTCTGTGCCTAGCAGGCTT
TGTGCCAGTGATTTATG
Found at i:96140344 original size:3 final size:3
Alignment explanation
Indices: 96140336--96140373 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
96140326 CAAAAACAGA
96140336 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG G-G GAG
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG
96140374 TTTTGTTTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.32, C:0.00, G:0.68, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:96142241 original size:13 final size:13
Alignment explanation
Indices: 96142219--96142248 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
96142209 TCTGTTTTCA
96142219 TTTT-TTTTTATT
1 TTTTATTTTTATT
96142231 TTTTATTTTTATT
1 TTTTATTTTTATT
96142244 TTTTA
1 TTTTA
96142249 AGTTATGGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTTATTTTTATT
Found at i:96143863 original size:14 final size:14
Alignment explanation
Indices: 96143837--96143869 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
96143827 CCTCCCGATA
96143837 ATTATTGATTCCAT
1 ATTATTGATTCCAT
96143851 -TTATTGCATTCCAT
1 ATTATTG-ATTCCAT
96143865 ATTAT
1 ATTAT
96143870 AGGTCTTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 6 0.35
14 7 0.41
15 4 0.24
ACGTcount: A:0.27, C:0.15, G:0.06, T:0.52
Consensus pattern (14 bp):
ATTATTGATTCCAT
Found at i:96146545 original size:15 final size:15
Alignment explanation
Indices: 96146525--96146554 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
96146515 GAAGAATGCA
96146525 ACAAACATGGGTATT
1 ACAAACATGGGTATT
96146540 ACAAACATGGGTATT
1 ACAAACATGGGTATT
96146555 GAGTTGTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (15 bp):
ACAAACATGGGTATT
Found at i:96151053 original size:50 final size:50
Alignment explanation
Indices: 96150978--96151077 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 50
96150968 TACACCAAAA
96150978 TACCTCTTATTCATCTGTCTCCATATCACATACAAATATGCACTCCAAGC
1 TACCTCTTATTCATCTGTCTCCATATCACATACAAATATGCACTCCAAGC
* * *
96151028 TACCTCTTGTTCCTTTGTCTCCATATCACATACAAATATGCACTCCAAGC
1 TACCTCTTATTCATCTGTCTCCATATCACATACAAATATGCACTCCAAGC
96151078 AAGCTTGAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.28, C:0.32, G:0.07, T:0.33
Consensus pattern (50 bp):
TACCTCTTATTCATCTGTCTCCATATCACATACAAATATGCACTCCAAGC
Found at i:96161015 original size:3 final size:3
Alignment explanation
Indices: 96161007--96161054 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
96160997 GAAATAAGAG
* *
96161007 TAA TAA TAA TAA TAA TAA CAA TAG TAA TAA TAA -AA TAA TTAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
96161051 TAA T
1 TAA T
96161055 GTAAAGGAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
2 4 0.11
3 31 0.82
4 3 0.08
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:96172858 original size:43 final size:43
Alignment explanation
Indices: 96172759--96172869 Score: 143
Period size: 43 Copynumber: 2.6 Consensus size: 43
96172749 CTGTAGCAGT
* *
96172759 GCTTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGAC
1 GCTTTTCCCACAAACGCCGCTAAAGAACATGACATTTAACGAC
* * **
96172802 GCTTTTCCCACAAATGCCGCTAAAGAACATGACATTTAATGGT
1 GCTTTTCCCACAAACGCCGCTAAAGAACATGACATTTAACGAC
*
96172845 G-TTTTCTCTACAAACGCCGCTAAAG
1 GCTTTTC-CCACAAACGCCGCTAAAG
96172870 GTCATGTTAC
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
42 5 0.08
43 54 0.92
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (43 bp):
GCTTTTCCCACAAACGCCGCTAAAGAACATGACATTTAACGAC
Found at i:96173292 original size:66 final size:66
Alignment explanation
Indices: 96173207--96173340 Score: 173
Period size: 66 Copynumber: 2.0 Consensus size: 66
96173197 ATTCTAAAGA
* *
96173207 TGTAGCTGGAGTTCCTCATATTTTCTACTT-GCCTCTGCTTCCCTCT-CTGCTGCCTCCACTTTA
1 TGTAGCTGGAGTTCCTCATATTTTCT-CTTAGCCTCTGCTTCCCT-TGATGCCGCCTCCACTTTA
96173270 AGT
64 AGT
** * * *
96173273 TGTAGCTGGAGTTTTTCATATTTTCTTTTAGCCTCTGCTTCTCTTGATGCCGCCTCTACTTTAAG
1 TGTAGCTGGAGTTCCTCATATTTTCTCTTAGCCTCTGCTTCCCTTGATGCCGCCTCCACTTTAAG
96173338 T
66 T
96173339 TG
1 TG
96173341 AGCAATTTGC
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
65 3 0.05
66 56 0.95
ACGTcount: A:0.13, C:0.27, G:0.16, T:0.44
Consensus pattern (66 bp):
TGTAGCTGGAGTTCCTCATATTTTCTCTTAGCCTCTGCTTCCCTTGATGCCGCCTCCACTTTAAG
T
Found at i:96181052 original size:13 final size:13
Alignment explanation
Indices: 96181034--96181060 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
96181024 AAAGTAATCG
96181034 CACACGGGCGTGT
1 CACACGGGCGTGT
96181047 CACACGGGCGTGT
1 CACACGGGCGTGT
96181060 C
1 C
96181061 CCTGTCGAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:96182393 original size:29 final size:29
Alignment explanation
Indices: 96182351--96182406 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
96182341 GGCAAAATAT
96182351 TTATAAAATTAAAAATA-TGTTATAAAAGC
1 TTATAAAATTAAAAATATTGTT-TAAAAGC
* *
96182380 TTATCAAATTAAAATTATTGTTTAAAA
1 TTATAAAATTAAAAATATTGTTTAAAA
96182407 ATATGATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.39
Consensus pattern (29 bp):
TTATAAAATTAAAAATATTGTTTAAAAGC
Found at i:96183218 original size:28 final size:29
Alignment explanation
Indices: 96183183--96183241 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
96183173 CCAAATCTCC
96183183 AAATTTTTATATTTTCCAAGTTAAAAGCA
1 AAATTTTTATATTTTCCAAGTTAAAAGCA
*
96183212 AAATTTTTATATTTTCCAAGTTAAATGCA
1 AAATTTTTATATTTTCCAAGTTAAAAGCA
96183241 A
1 A
96183242 GTACCAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.42
Consensus pattern (29 bp):
AAATTTTTATATTTTCCAAGTTAAAAGCA
Found at i:96183941 original size:22 final size:22
Alignment explanation
Indices: 96183898--96183946 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
96183888 GGAAAATCAA
* *
96183898 AGGGATTTCGGGATCTTGATTT
1 AGGGATTTCGAGATCTTAATTT
* *
96183920 AGGGATTTTGAGATTTTAATTT
1 AGGGATTTCGAGATCTTAATTT
*
96183942 TGGGA
1 AGGGA
96183947 AAAATTAATG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.04, G:0.31, T:0.43
Consensus pattern (22 bp):
AGGGATTTCGAGATCTTAATTT
Found at i:96185555 original size:9 final size:9
Alignment explanation
Indices: 96185541--96185576 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
96185531 AAATAAAATT
96185541 AAATTAATC
1 AAATTAATC
96185550 AAATTAATC
1 AAATTAATC
*
96185559 AAATTAATTA
1 AAATTAA-TC
96185569 AAATTAAT
1 AAATTAAT
96185577 ATGATATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 17 0.68
10 8 0.32
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (9 bp):
AAATTAATC
Found at i:96185564 original size:18 final size:19
Alignment explanation
Indices: 96185541--96185576 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
96185531 AAATAAAATT
*
96185541 AAATTAA-TCAAATTAATC
1 AAATTAATTAAAATTAATC
96185559 AAATTAATTAAAATTAAT
1 AAATTAATTAAAATTAAT
96185577 ATGATATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (19 bp):
AAATTAATTAAAATTAATC
Found at i:96186053 original size:31 final size:31
Alignment explanation
Indices: 96185977--96186095 Score: 123
Period size: 31 Copynumber: 3.6 Consensus size: 31
96185967 TTTAATAGAT
* * *
96185977 TTAATATTAAATTTAATTTAATACTTATCT-TA
1 TTAATATTAAATTTAATTTAA-AGTGAT-TATC
96186009 TTAATATTTTATTAATTTAATATTAAAGTGATTATC
1 TTAATA--TTA--AATTTAAT-TTAAAGTGATTATC
**
96186045 TTAATATTAAATTTAATTTATTGTGATTATC
1 TTAATATTAAATTTAATTTAAAGTGATTATC
96186076 TTAATATTAAATTTAATTTA
1 TTAATATTAAATTTAATTTA
96186096 TTGTTTATCT
Statistics
Matches: 76, Mismatches: 5, Indels: 13
0.81 0.05 0.14
Matches are distributed among these distances:
31 32 0.42
32 14 0.18
34 6 0.08
35 1 0.01
36 19 0.25
37 4 0.05
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.54
Consensus pattern (31 bp):
TTAATATTAAATTTAATTTAAAGTGATTATC
Found at i:96186096 original size:31 final size:31
Alignment explanation
Indices: 96186018--96186106 Score: 130
Period size: 31 Copynumber: 2.9 Consensus size: 31
96186008 ATTAATATTT
**
96186018 TATT-AATTTAATATTAAAGTGATTATCTTAA
1 TATTAAATTTAAT-TTATTGTGATTATCTTAA
96186049 TATTAAATTTAATTTATTGTGATTATCTTAA
1 TATTAAATTTAATTTATTGTGATTATCTTAA
96186080 TATTAAATTTAATTTATTGT--TTATCTT
1 TATTAAATTTAATTTATTGTGATTATCTT
96186107 GTAGATAAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
29 7 0.13
31 40 0.73
32 8 0.15
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.55
Consensus pattern (31 bp):
TATTAAATTTAATTTATTGTGATTATCTTAA
Found at i:96192781 original size:18 final size:20
Alignment explanation
Indices: 96192758--96192802 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
96192748 GACATTGAAA
96192758 AATATTGAATAC-GAAA-TG
1 AATATTGAATACTGAAATTG
96192776 AATATTG-ATACTGAAATTG
1 AATATTGAATACTGAAATTG
*
96192795 AAAATTGA
1 AATATTGA
96192803 GAAATTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 4 0.17
18 11 0.48
19 8 0.35
ACGTcount: A:0.49, C:0.04, G:0.16, T:0.31
Consensus pattern (20 bp):
AATATTGAATACTGAAATTG
Found at i:96194229 original size:11 final size:11
Alignment explanation
Indices: 96194213--96194241 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
96194203 AAATGAAGGT
96194213 AAGCTTACTTA
1 AAGCTTACTTA
96194224 AAGCTTACTTA
1 AAGCTTACTTA
96194235 AAGCTTA
1 AAGCTTA
96194242 GTAAGTTCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.34
Consensus pattern (11 bp):
AAGCTTACTTA
Found at i:96197010 original size:15 final size:16
Alignment explanation
Indices: 96196990--96197019 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96196980 AAAGTTACTT
96196990 AAAA-TTAAAAATAAA
1 AAAATTTAAAAATAAA
96197005 AAAATTTAAAAATAA
1 AAAATTTAAAAATAA
96197020 TTTAATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAATTTAAAAATAAA
Found at i:96201478 original size:31 final size:31
Alignment explanation
Indices: 96201442--96201501 Score: 104
Period size: 31 Copynumber: 1.9 Consensus size: 31
96201432 CTTTAAATAT
96201442 ATATATAAATTGAAAATAATAAA-AAAAAAGA
1 ATATATAAATTGAAAATAA-AAATAAAAAAGA
96201473 ATATATAAATTGAAAATAAAAATAAAAAA
1 ATATATAAATTGAAAATAAAAATAAAAAA
96201502 TTTAGTTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 3 0.11
31 25 0.89
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (31 bp):
ATATATAAATTGAAAATAAAAATAAAAAAGA
Found at i:96201590 original size:10 final size:10
Alignment explanation
Indices: 96201575--96201600 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
96201565 AATTGTAAAA
96201575 TTTAAAATAT
1 TTTAAAATAT
96201585 TTTAAAATAT
1 TTTAAAATAT
96201595 TTTAAA
1 TTTAAA
96201601 CATAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TTTAAAATAT
Found at i:96213009 original size:20 final size:20
Alignment explanation
Indices: 96212964--96213002 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
96212954 AAAGATGAAA
*
96212964 AAAATAAGAAAAA-AAAAGAG
1 AAAA-AAGAAAAATTAAAGAG
96212984 AAAAAAGAAAAATTAAAGA
1 AAAAAAGAAAAATTAAAGA
96213003 AATAAAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (20 bp):
AAAAAAGAAAAATTAAAGAG
Found at i:96213016 original size:11 final size:10
Alignment explanation
Indices: 96212960--96213015 Score: 60
Period size: 11 Copynumber: 5.4 Consensus size: 10
96212950 GGGAAAAGAT
96212960 GAAAAAAATAA
1 GAAAAAAA-AA
96212971 GAAAAAAAAA
1 GAAAAAAAAA
*
96212981 G-AGAAAAAA
1 GAAAAAAAAA
*
96212990 GAAAAATTAAA
1 GAAAAA-AAAA
96213001 GAAATAAAAAA
1 GAAA-AAAAAA
96213012 GAAA
1 GAAA
96213016 TTAGAATATT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
9 8 0.21
10 6 0.16
11 22 0.58
12 2 0.05
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.07
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:96215635 original size:15 final size:16
Alignment explanation
Indices: 96215617--96215650 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
96215607 TAATAAATAG
96215617 ATAA-AACAAATTTAA
1 ATAATAACAAATTTAA
*
96215632 ATAATATCAAATTTAA
1 ATAATAACAAATTTAA
96215648 ATA
1 ATA
96215651 TCTAAAAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAATAACAAATTTAA
Found at i:96215817 original size:36 final size:35
Alignment explanation
Indices: 96215777--96215891 Score: 99
Period size: 36 Copynumber: 3.1 Consensus size: 35
96215767 TATAGATATA
96215777 AATAATATCAAATTTTAAATATTTAAAAAGTGAAAG
1 AATAATATCAAATTTTAAATATTTAAAAAGT-AAAG
** * * * *
96215813 AATAATGAAT-AAATAAATAAATAGATAAAACAAATATAG
1 AATAAT--ATCAAAT-TTTAAATA-TTTAAA-AAGTAAAG
96215852 -ATAATATCAAATTTTAAATATTTAAAAAGTAAGAG
1 AATAATATCAAATTTTAAATATTTAAAAAGTAA-AG
96215887 AATAA
1 AATAA
96215892 GGAATAAATA
Statistics
Matches: 59, Mismatches: 12, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
34 4 0.07
35 6 0.10
36 18 0.31
37 8 0.14
38 13 0.22
39 7 0.12
40 3 0.05
ACGTcount: A:0.60, C:0.03, G:0.08, T:0.30
Consensus pattern (35 bp):
AATAATATCAAATTTTAAATATTTAAAAAGTAAAG
Found at i:96215826 original size:74 final size:73
Alignment explanation
Indices: 96215559--96215991 Score: 609
Period size: 74 Copynumber: 5.9 Consensus size: 73
96215549 ATACTTTAAT
* **
96215559 AATAATATCAATTTTAAATATTTAAAAAGTGTAAGAATAACAAATAAAT-AATAAATAGATAAAA
1 AATAATATCAAATTTAAATATTTAAAAAGTAAAAGAATAACAAATAAATAAATAAATAGATAAAA
*
96215623 CAAATTTA
66 CAAATATA
* *
96215631 AATAATATCAAATTTAAATATCTAAAAGGTAAAAGAATAACAAATAAATAAATAAATAGATAAAA
1 AATAATATCAAATTTAAATATTTAAAAAGTAAAAGAATAACAAATAAATAAATAAATAGATAAAA
*
96215696 CAAATATT
66 CAAATATA
* * * *
96215704 AATAATACCAAATTTAAATATTTAAAAAGTAAAAGAATAATAAATAAATAAATAAATGGATAATA
1 AATAATATCAAATTTAAATATTTAAAAAGTAAAAGAATAACAAATAAATAAATAAATAGATAAAA
* *
96215769 TAGATATA
66 CAAATATA
* **
96215777 AATAATATCAAATTTTAAATATTTAAAAAGTGAAAGAATAATGAATAAATAAATAAATAGATAAA
1 AATAATATCAAA-TTTAAATATTTAAAAAGTAAAAGAATAACAAATAAATAAATAAATAGATAAA
96215842 ACAAATATA
65 ACAAATATA
* * ** *
96215851 GATAATATCAAATTTTAAATATTTAAAAAGTAAGAGAATAAGGAATAAATAAATAAATAGTTAAA
1 AATAATATCAAA-TTTAAATATTTAAAAAGTAAAAGAATAACAAATAAATAAATAAATAGATAAA
*
96215916 ACGAATATA
65 ACAAATATA
* * *
96215925 GATAATGTCAAATTTAAATATTT-AATAGTAAAAGAATAACAAATAAATAAATAAATAGATAAAA
1 AATAATATCAAATTTAAATATTTAAAAAGTAAAAGAATAACAAATAAATAAATAAATAGATAAAA
96215989 CAA
66 CAA
96215992 CTCATAAAAG
Statistics
Matches: 323, Mismatches: 36, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
72 82 0.25
73 107 0.33
74 134 0.41
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (73 bp):
AATAATATCAAATTTAAATATTTAAAAAGTAAAAGAATAACAAATAAATAAATAAATAGATAAAA
CAAATATA
Found at i:96218897 original size:6 final size:6
Alignment explanation
Indices: 96218886--96218914 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
96218876 TGAATCTTAA
96218886 TAATAT TAATAT TAATAT TAATAT TAATA
1 TAATAT TAATAT TAATAT TAATAT TAATA
96218915 ATTTGTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
TAATAT
Found at i:96221076 original size:10 final size:10
Alignment explanation
Indices: 96221061--96221146 Score: 56
Period size: 10 Copynumber: 8.9 Consensus size: 10
96221051 AATAAATTTC
96221061 TATATTTTTT
1 TATATTTTTT
96221071 TATA--TTTT
1 TATATTTTTT
* *
96221079 AAAATTTTTT
1 TATATTTTTT
96221089 CTA-ATTTTTT
1 -TATATTTTTT
* **
96221099 AATA-ACTTT
1 TATATTTTTT
*
96221108 TATATTTTTCC
1 TATATTTTT-T
96221119 TATATTTTTT
1 TATATTTTTT
*
96221129 TATATTTTTA
1 TATATTTTTT
96221139 TA-ATTTTT
1 TATATTTTT
96221147 ATTGTCTTTT
Statistics
Matches: 58, Mismatches: 12, Indels: 13
0.70 0.14 0.16
Matches are distributed among these distances:
8 6 0.10
9 13 0.22
10 29 0.50
11 10 0.17
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.69
Consensus pattern (10 bp):
TATATTTTTT
Found at i:96221078 original size:29 final size:29
Alignment explanation
Indices: 96221046--96221145 Score: 93
Period size: 29 Copynumber: 3.5 Consensus size: 29
96221036 ACTTTTGGTG
*
96221046 TTTTTAATAAATTTCTATATTTTTTTATA
1 TTTTTAATAATTTTCTATATTTTTTTATA
*
96221075 -TTTTAA-AATTTTTTCTA-ATTTTTTAATAA
1 TTTTTAATAA--TTTTCTATATTTTTTTAT-A
* *
96221104 CTTTT-ATATTTTTCCTATATTTTTTTATA
1 TTTTTAATAATTTT-CTATATTTTTTTATA
96221133 TTTTT-ATAATTTT
1 TTTTTAATAATTTT
96221146 TATTGTCTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
27 2 0.03
28 19 0.33
29 23 0.40
30 14 0.24
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (29 bp):
TTTTTAATAATTTTCTATATTTTTTTATA
Found at i:96221096 original size:9 final size:9
Alignment explanation
Indices: 96221061--96221148 Score: 54
Period size: 9 Copynumber: 9.3 Consensus size: 9
96221051 AATAAATTTC
96221061 TATATTTTT
1 TATATTTTT
96221070 T-TATATTTT
1 TATAT-TTTT
* *
96221079 AAAATTTTT
1 TATATTTTT
*
96221088 TCTAATTTTT
1 TAT-ATTTTT
**
96221098 TAATAACTTT
1 T-ATATTTTT
96221108 TATATTTTT
1 TATATTTTT
96221117 CCTATATTTTT
1 --TATATTTTT
96221128 T-TATATTTT
1 TATAT-TTTT
*
96221137 TATAATTTT
1 TATATTTTT
96221146 TAT
1 TAT
96221149 TGTCTTTTAT
Statistics
Matches: 60, Mismatches: 11, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
8 6 0.10
9 28 0.47
10 16 0.27
11 10 0.17
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (9 bp):
TATATTTTT
Found at i:96221147 original size:48 final size:48
Alignment explanation
Indices: 96221046--96221146 Score: 123
Period size: 48 Copynumber: 2.1 Consensus size: 48
96221036 ACTTTTGGTG
* *
96221046 TTTTTAATAAATTTCTATATTTTTTTATATTTTAAAATTTTTTCTAAT
1 TTTTTAATAAATTTCTATATTTTTCTATATTTTAAAATTTTTTATAAT
* ***
96221094 TTTTTAATAACTTT-TATATTTTTCCTATATTTTTTTATATTTTTATAAT
1 TTTTTAATAAATTTCTATATTTTT-CTATATTTTAAAAT-TTTTTATAAT
96221143 TTTT
1 TTTT
96221147 ATTGTCTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
47 9 0.20
48 23 0.51
49 13 0.29
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (48 bp):
TTTTTAATAAATTTCTATATTTTTCTATATTTTAAAATTTTTTATAAT
Found at i:96221269 original size:19 final size:19
Alignment explanation
Indices: 96221245--96221281 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
96221235 TTATATTTTA
96221245 TAATTTTTAAAAAAAATTC
1 TAATTTTTAAAAAAAATTC
* *
96221264 TAATTTTTTAAATAAATT
1 TAATTTTTAAAAAAAATT
96221282 TAAAATACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
TAATTTTTAAAAAAAATTC
Found at i:96223691 original size:17 final size:18
Alignment explanation
Indices: 96223663--96223722 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
96223653 GGTGTCCAAA
96223663 TTTAGATGAAATATTAATT
1 TTTAG-TGAAATATTAATT
* *
96223682 CTTAGT-AAATTTATATATT
1 TTTAGTGAAATAT-TA-ATT
96223701 TTTA-TGAAATATTAATT
1 TTTAGTGAAATATTAATT
96223718 TTTAG
1 TTTAG
96223723 GTTATTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
17 12 0.36
18 6 0.18
19 15 0.45
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (18 bp):
TTTAGTGAAATATTAATT
Found at i:96223782 original size:33 final size:30
Alignment explanation
Indices: 96223727--96223788 Score: 88
Period size: 33 Copynumber: 2.0 Consensus size: 30
96223717 TTTTAGGTTA
*
96223727 TTATTATTTTAAATATATATAAAATATAAAC
1 TTATTATTTTAAAAATATATAAAA-ATAAAC
96223758 TTATATATTTATAAAAATATATAAAAATAAA
1 TTAT-TATTT-TAAAAATATATAAAAATAAA
96223789 TACAATTACA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 4 0.14
32 10 0.36
33 14 0.50
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (30 bp):
TTATTATTTTAAAAATATATAAAAATAAAC
Found at i:96223916 original size:35 final size:34
Alignment explanation
Indices: 96223840--96223916 Score: 84
Period size: 35 Copynumber: 2.2 Consensus size: 34
96223830 CTAAATTAAA
** *
96223840 AATACAACATATAAATTAATAAAAATTTAAAATTT
1 AATA-AACATATAAAAGAATAAAAATTTAAAAATT
96223875 AAATAAACATATAAAAGAACTAAAAATTTATAAAATT
1 -AATAAACATATAAAAGAA-TAAAAATTTA-AAAATT
96223912 -ATAAA
1 AATAAA
96223917 ATGTATAACT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
35 17 0.47
36 14 0.39
37 5 0.14
ACGTcount: A:0.64, C:0.05, G:0.01, T:0.30
Consensus pattern (34 bp):
AATAAACATATAAAAGAATAAAAATTTAAAAATT
Found at i:96228325 original size:6 final size:7
Alignment explanation
Indices: 96228299--96228324 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
96228289 GATGCCATTC
96228299 TTTTTTA
1 TTTTTTA
96228306 TTTTTTA
1 TTTTTTA
96228313 TTTTTTA
1 TTTTTTA
96228320 TTTTT
1 TTTTT
96228325 AAGTCACATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:96229451 original size:10 final size:10
Alignment explanation
Indices: 96229433--96229466 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
96229423 ATCTATTAAT
96229433 ATATTATATA
1 ATATTATATA
*
96229443 ATATGATATA
1 ATATTATATA
*
96229453 ACATTATATA
1 ATATTATATA
96229463 ATAT
1 ATAT
96229467 AGTAGGAGGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (10 bp):
ATATTATATA
Found at i:96229590 original size:16 final size:17
Alignment explanation
Indices: 96229571--96229603 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
96229561 TATATACTGT
96229571 ACTACTATTAT-ATATA
1 ACTACTATTATAATATA
*
96229587 ACTATTATTATAATATA
1 ACTACTATTATAATATA
96229604 GATTATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (17 bp):
ACTACTATTATAATATA
Found at i:96229639 original size:242 final size:240
Alignment explanation
Indices: 96229332--96230586 Score: 1200
Period size: 242 Copynumber: 5.0 Consensus size: 240
96229322 ATATTAATAC
* * *
96229332 ATATATAACTATTATTATAATATATGTTATAATAAAAAAATATATAGTATTACATGATATTATAA
1 ATATATAACTATTATTATAATATA-G--AT--T-ATAAAAGATATAGTATTATATGATATTATAA
96229397 TGTTTAATCATTGATGCATATATATAATCTATTAATATATTATATAATATGATATAACATTATAT
60 TGTTTAATCATTGATGCATATATATAATCTATTAATATATTATATAATATGATATAACATTATAT
* * * * *
96229462 AATATAGTAGGAGGATTAATTTTTAAATATACGAAAATTATAGATACTTGGAGCATATTTCAACT
125 AATATAGTAGGAGGGTTAATTTTCAAATATACGAAAAGTATAGAGACTTAGAGCATATTTCAACT
**
96229527 ATCATAATAGCAAACAATAATATATAATAAGTAATATATACTGTACTACTATT
190 AT-ATAATAATAAACAATAATATATAATAAGTAATATATA-TGTACTACTATT
96229580 ATATATAACTATTATTATAATATAGATTATAAAAGATATAGTATTATATGATATTATAATGTTTA
1 ATATATAACTATTATTATAATATAGATTATAAAAGATATAGTATTATATGATATTATAATGTTTA
* * * * * * *
96229645 ATCATTTATGTATATATATAAACTATTAATATATGATATGATATGATATAGCATTATATAATATG
66 ATCATTGATGCATATATATAATCTATTAATATATTATATAATATGATATAACATTATATAATATA
* **
96229710 GTAGGAGGGCTAATTTTCAAATGCACGAAAAGTATATG-GACTTAGAGCATATTTCAACTAGTAT
131 GTAGGAGGGTTAATTTTCAAATATACGAAAAGTATA-GAGACTTAGAGCATATTTCAACTA-TAT
* *
96229774 AATAATAAACAACAATATATAATACGTAATATATGATGTACTACTATT
194 AATAATAAACAATAATATATAATAAGTAATATAT-ATGTACTACTATT
* * * * *
96229822 ATA-A-AGCTATTATTATAAT-T-TATAATAAAAGATATAATATT-TCATAATATTATAATGTTT
1 ATATATAACTATTATTATAATATAGATTATAAAAGATATAGTATTAT-ATGATATTATAATGTTT
* * *
96229882 AATCATTGGTGTATATATATAAACTATTAATATATTATATACTATACGATACGATATGATATGAT
65 AATCATTGATGCATATATAT-AA-T-CT-AT-TA--ATATA-T-T---AT---ATA--ATATGAT
* * * * ** * * * * *
96229947 ATAACATAATATAATATAATAGGATGGCTACCTTTCATATGTACAAAAACTATAGGGACTTAGAG
113 ATAACATTATATAATATAGTAGGAGGGTTAATTTTCAAATATACGAAAAGTATAGAGACTTAGAG
* * * * *
96230012 TATATTTCAACTAATATAATAA-AAATAATAATA-ATTAATTTA-TAATAAATAATGTACAACTA
178 CATATTTCAACT-ATATAATAATAAACAATAATATA-TAA-TAAGTAATATAT-ATGTACTACTA
96230074 TT
239 TT
* * * *
96230076 ATATATAATTATTA-TATAATAGATTATAATAAAAGATATAGTATTATATGATATTATAATGTTT
1 ATATATAACTATTATTATAATATA-GATTATAAAAGATATAGTATTATATGATATTATAATGTTT
* * * *
96230140 AATTATTGATGCATATATA-AACTATTATTATATTATATTATACATGATATGATATAGCATTATA
65 AATCATTGATGCATATATATAA-T-CTATTA-A-TATATTAT--ATAATATGATATAACATTATA
* * * *
96230204 TAATATAGTAGGAGGGTTAATTTTTAAATATACGAAAAATACAGGGACTTAGAGCATATTTCAAC
124 TAATATAGTAGGAGGGTTAATTTTCAAATATACGAAAAGTATAGAGACTTAGAGCATATTTCAAC
* *
96230269 TAATATAATAATAAACAATAATATATAATAAAATTAATATATAATGTACTACCATT
189 T-ATATAATAATAAACAATAATATATAAT--AAGTAATATAT-ATGTACTACTATT
* * * *
96230325 ATATATAACTATTATTATATTATTGGTTATAATAAAATCTATAGTATTATATGATATTATAATGT
1 ATATATAACTATTATTATAATATAGATTATAA-AAGA--TATAGTATTATATGATATTATAATGT
* *
96230390 TTAAACATTGATGCATATATGTGTATAAACTATTAAAATATATTATATACTATATGACATTATAC
63 TTAATCATTGATGCATATA----TATAATCTATT--AATATATTATATA--ATATG--A-TAT--
* * * *
96230455 AACATTATATAATAGAGTAGGAGGGTTAACTTTCAAATTTATGAAAAGTATAGAGACTTAGAGCA
115 AACATTATATAATATAGTAGGAGGGTTAATTTTCAAATATACGAAAAGTATAGAGACTTAGAGCA
* *
96230520 TATTTCAACCAATATAATAATAAACAATAATATATGTTAATAATTAATATATGATGTACTACTAT
180 TATTTCAA-CTATATAATAATAAACAATAATATA---TAATAAGTAATATAT-ATGTACTACTAT
96230585 T
240 T
96230586 A
1 A
96230587 GATTATAGAA
Statistics
Matches: 841, Mismatches: 107, Indels: 105
0.80 0.10 0.10
Matches are distributed among these distances:
237 1 0.00
238 52 0.06
239 3 0.00
240 14 0.02
241 2 0.00
242 191 0.23
243 6 0.01
245 7 0.01
246 82 0.10
247 14 0.02
248 28 0.03
249 39 0.05
250 11 0.01
252 44 0.05
253 8 0.01
254 41 0.05
255 105 0.12
256 17 0.02
257 4 0.00
258 55 0.07
259 1 0.00
260 87 0.10
261 25 0.03
263 4 0.00
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (240 bp):
ATATATAACTATTATTATAATATAGATTATAAAAGATATAGTATTATATGATATTATAATGTTTA
ATCATTGATGCATATATATAATCTATTAATATATTATATAATATGATATAACATTATATAATATA
GTAGGAGGGTTAATTTTCAAATATACGAAAAGTATAGAGACTTAGAGCATATTTCAACTATATAA
TAATAAACAATAATATATAATAAGTAATATATATGTACTACTATT
Found at i:96230308 original size:16 final size:17
Alignment explanation
Indices: 96230269--96230313 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 17
96230259 ATATTTCAAC
96230269 TAATATAATAATAAACAA
1 TAATAT-ATAATAAACAA
*
96230287 TAATATATAATAAA-AT
1 TAATATATAATAAACAA
96230303 TAATATATAAT
1 TAATATATAAT
96230314 GTACTACCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 12 0.46
17 8 0.31
18 6 0.23
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (17 bp):
TAATATATAATAAACAA
Found at i:96231735 original size:45 final size:45
Alignment explanation
Indices: 96231667--96231771 Score: 140
Period size: 45 Copynumber: 2.3 Consensus size: 45
96231657 AACGGTAGCA
* *
96231667 GTAACAGTAACATTAACAATATTCAACACACAAAGTGTTGAATCT
1 GTAACAGTAACAGTAACAATATTCAACACACAAAGTGTCGAATCT
* * *
96231712 GTAACAGTAACGGTAACAGTATTCGACACACAAAGTGTCGAATC-
1 GTAACAGTAACAGTAACAATATTCAACACACAAAGTGTCGAATCT
*
96231756 GAAAACAGTAACAGTA
1 G-TAACAGTAACAGTA
96231772 GTCGGCATAT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
44 1 0.02
45 51 0.98
ACGTcount: A:0.44, C:0.18, G:0.16, T:0.22
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAATATTCAACACACAAAGTGTCGAATCT
Found at i:96232024 original size:40 final size:40
Alignment explanation
Indices: 96231974--96232057 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
96231964 TCATTACTTT
* * *
96231974 AGTAATTTCACAGTTCAATGCAGTACAT-ATAACAATATTC
1 AGTAACTTCACAATTCAATGCAGTAC-TCAAAACAATATTC
*
96232014 AGTAACTTCACAATTCAATTCAGTACTCAAAACAATATTC
1 AGTAACTTCACAATTCAATGCAGTACTCAAAACAATATTC
96232054 AGTA
1 AGTA
96232058 TTCCATAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.03
40 38 0.97
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (40 bp):
AGTAACTTCACAATTCAATGCAGTACTCAAAACAATATTC
Found at i:96233900 original size:17 final size:17
Alignment explanation
Indices: 96233878--96233912 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
96233868 TTTCAACCAG
96233878 TATAATAAAAAATAATA
1 TATAATAAAAAATAATA
* *
96233895 TATAATAATAATTAATA
1 TATAATAAAAAATAATA
96233912 T
1 T
96233913 CTTATGTACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
TATAATAAAAAATAATA
Found at i:96235704 original size:30 final size:30
Alignment explanation
Indices: 96235670--96235731 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
96235660 CTTAATAAGT
* *
96235670 AAATGCCTCTAAAGTAGTAAAAAAATTAAC
1 AAATGCCTCTAAAATAATAAAAAAATTAAC
*
96235700 AAATGCCTTTAAAATAATAAAAAAATTAAC
1 AAATGCCTCTAAAATAATAAAAAAATTAAC
96235730 AA
1 AA
96235732 TAAAATAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.58, C:0.11, G:0.06, T:0.24
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAAAAAAATTAAC
Found at i:96236406 original size:14 final size:14
Alignment explanation
Indices: 96236397--96236427 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
96236387 TGTTATTTTT
96236397 TTACTATTATGTTG
1 TTACTATTATGTTG
*
96236411 TTACTATTTTGTTG
1 TTACTATTATGTTG
96236425 TTA
1 TTA
96236428 TTATATAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.61
Consensus pattern (14 bp):
TTACTATTATGTTG
Found at i:96236574 original size:18 final size:18
Alignment explanation
Indices: 96236553--96236592 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
96236543 AAAATATTTA
*
96236553 TTTTAATAT-TTTTAGTAT
1 TTTTAATATATTATA-TAT
96236571 TTTTAATATATTATATAT
1 TTTTAATATATTATATAT
96236589 TTTT
1 TTTT
96236593 TTAAAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTTAATATATTATATAT
Found at i:96237412 original size:19 final size:19
Alignment explanation
Indices: 96237376--96237412 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
96237366 TAACTAGGCT
* *
96237376 TTAATTAAGTGAATTTAGC
1 TTAATTAAGAGAAATTAGC
96237395 TTAATTAAGAGAAATTAG
1 TTAATTAAGAGAAATTAG
96237413 GAAAAATGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.16, T:0.38
Consensus pattern (19 bp):
TTAATTAAGAGAAATTAGC
Found at i:96237616 original size:16 final size:18
Alignment explanation
Indices: 96237584--96237617 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
96237574 TTATTACGGT
96237584 TTATATATTAGTTATTAA
1 TTATATATTAGTTATTAA
96237602 TTAT-TATTA-TTATTAA
1 TTATATATTAGTTATTAA
96237618 ATAAATTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 5 0.31
18 4 0.25
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (18 bp):
TTATATATTAGTTATTAA
Found at i:96237915 original size:31 final size:32
Alignment explanation
Indices: 96237866--96237929 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 32
96237856 ATATTAAATA
*
96237866 AGATATTTATTAATTAAATA-ATTATATTATG
1 AGATATTTATTAATTAAATATATTAAATTATG
*
96237897 AGATTTTTATGTAA-TAAATATATTAAATTATG
1 AGATATTTAT-TAATTAAATATATTAAATTATG
96237929 A
1 A
96237930 CAAATGTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 15 0.52
32 14 0.48
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (32 bp):
AGATATTTATTAATTAAATATATTAAATTATG
Found at i:96237961 original size:142 final size:142
Alignment explanation
Indices: 96237723--96238019 Score: 316
Period size: 142 Copynumber: 2.1 Consensus size: 142
96237713 TTTAGAACAA
* * * *
96237723 AAGATATTTATTAATTCAATAATTAAATAAAGAGATTTTTGTTTGATAAATAAATTAAATAATGA
1 AAGATATTTATTAATTAAATAATTAAATAAAGAGATTTTTATGTAATAAATAAATTAAATAATGA
* * * * * * * * * *
96237788 CAATTGTAATAAATTTATTGGTCCAAATGTAAAAATATAAGTGTGTACAATTGTAATATTAGTAT
66 CAAATGTAATAAATTTAGTGGTACAAATGTAAAAATACAAATGTATACAAATGTAAAATAAATA-
96237853 TTGA-TATTAAAT
130 TTGATTATTAAAT
* * * * *
96237865 AAGATATTTATTAATTAAATAATTATATTATGAGATTTTTATGTAATAAATATATTAAATTATGA
1 AAGATATTTATTAATTAAATAATTAAATAAAGAGATTTTTATGTAATAAATAAATTAAATAATGA
* ** *
96237930 CAAATGTATGGTAAAATTT-GT-G-ACATGTGTAATAATACAAATGTATACAAATGTAAAATAAA
66 CAAATGTA--AT-AAATTTAGTGGTACAAATGTAAAAATACAAATGTATACAAATGTAAAATAAA
96237992 TATTGATTATTAAAT
128 TATTGATTATTAAAT
96238007 -AGATATTTATTAA
1 AAGATATTTATTAA
96238020 CTTATTATAT
Statistics
Matches: 128, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
141 17 0.13
142 102 0.80
143 1 0.01
144 2 0.02
145 6 0.05
ACGTcount: A:0.46, C:0.03, G:0.11, T:0.40
Consensus pattern (142 bp):
AAGATATTTATTAATTAAATAATTAAATAAAGAGATTTTTATGTAATAAATAAATTAAATAATGA
CAAATGTAATAAATTTAGTGGTACAAATGTAAAAATACAAATGTATACAAATGTAAAATAAATAT
TGATTATTAAAT
Found at i:96238879 original size:15 final size:15
Alignment explanation
Indices: 96238831--96238883 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
96238821 GAATTTATTA
96238831 AATTTATATTGATTG
1 AATTTATATTGATTG
* *
96238846 AAATTAT-TTGGGTTG
1 AATTTATATT-GATTG
*
96238861 AATTTATATTGATTT
1 AATTTATATTGATTG
96238876 AA-TTATAT
1 AATTTATAT
96238884 AATATATATG
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
14 8 0.26
15 21 0.68
16 2 0.06
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (15 bp):
AATTTATATTGATTG
Found at i:96239142 original size:12 final size:12
Alignment explanation
Indices: 96239120--96239150 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
96239110 TATATGTGAT
96239120 TATTAGAATGGTA
1 TATT-GAATGGTA
96239133 TATTGAATGGTA
1 TATTGAATGGTA
96239145 TATTGA
1 TATTGA
96239151 TGCAAGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (12 bp):
TATTGAATGGTA
Found at i:96240294 original size:7 final size:7
Alignment explanation
Indices: 96240282--96240316 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
96240272 GAAATTGATT
96240282 TATTTGA
1 TATTTGA
96240289 TATTTGA
1 TATTTGA
96240296 TATTTGA
1 TATTTGA
96240303 TATTTGA
1 TATTTGA
96240310 TATTTGA
1 TATTTGA
96240317 ATAGAATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (7 bp):
TATTTGA
Found at i:96242516 original size:105 final size:105
Alignment explanation
Indices: 96242334--96242604 Score: 445
Period size: 105 Copynumber: 2.6 Consensus size: 105
96242324 TAACCGTTAT
* **
96242334 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
96242399 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
96242439 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
96242504 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* **
96242544 TGGTGGA-ATCACGCACATAGCACCAACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATAT--CGCACTTAGCACC-ACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
96242605 TTATATACAA
Statistics
Matches: 155, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
104 2 0.01
105 108 0.70
106 12 0.08
107 33 0.21
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:96242965 original size:29 final size:29
Alignment explanation
Indices: 96242932--96242995 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
96242922 TAATCCACCA
96242932 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
96242961 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
96242991 CCCAA
1 CCCAA
96242996 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:96242969 original size:30 final size:30
Alignment explanation
Indices: 96242939--96242995 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
96242929 CCACCCAACT
96242939 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
96242968 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
96242996 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Done.