Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 298 of 325
Found at i:97158313 original size:29 final size:30
Alignment explanation
Indices: 97158254--97158314 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
97158244 TTTGAAAACT
* * *
97158254 AAAAAAAAAACTAGACTTATCATTAATAAA
1 AAAAAAAAAACTAAACTTATCATGAACAAA
*
97158284 AAAAAAAAAACTAAACTTA-CATGAGCAAA
1 AAAAAAAAAACTAAACTTATCATGAACAAA
97158313 AA
1 AA
97158315 TCTTCTCCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.66, C:0.11, G:0.05, T:0.18
Consensus pattern (30 bp):
AAAAAAAAAACTAAACTTATCATGAACAAA
Found at i:97162761 original size:6 final size:6
Alignment explanation
Indices: 97162742--97162780 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
97162732 GTCGAAACTT
*
97162742 TTGCCC TTGACC TTGCCC TTGCCC TTGCCC TTGCCC TTG
1 TTGCCC TTGCCC TTGCCC TTGCCC TTGCCC TTGCCC TTG
97162781 ATAAACAGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.03, C:0.44, G:0.18, T:0.36
Consensus pattern (6 bp):
TTGCCC
Found at i:97165188 original size:22 final size:22
Alignment explanation
Indices: 97165163--97165205 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
97165153 TTGGGGTTTG
97165163 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
97165185 TAGGAATATTTTGTAGATATT
1 TAGGAATATTCTGTAAATATT
97165206 CTTTTTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:97168922 original size:22 final size:22
Alignment explanation
Indices: 97168894--97168936 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
97168884 AGGGGGAGTG
97168894 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
97168916 TAGGAATATTTTGTAGATATT
1 TAGGAATATTCTGTAAATATT
97168937 CTTTTTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:97169170 original size:27 final size:27
Alignment explanation
Indices: 97169140--97169191 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
97169130 ATGCTATGGA
97169140 CCTCATATGGTGTCAAAGCTGATGTGC
1 CCTCATATGGTGTCAAAGCTGATGTGC
97169167 CCTCATATGGTGTCAAAGCTGATGT
1 CCTCATATGGTGTCAAAGCTGATGT
97169192 AACTTTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (27 bp):
CCTCATATGGTGTCAAAGCTGATGTGC
Found at i:97170133 original size:452 final size:452
Alignment explanation
Indices: 97169284--97171094 Score: 3577
Period size: 452 Copynumber: 4.0 Consensus size: 452
97169274 ATCCACTTAA
*
97169284 TGTAAGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
1 TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
97169349 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
66 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
*
97169414 TGATCTGTTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
131 TGATCTATTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
97169479 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
196 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
97169544 AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
261 AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
97169609 GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
326 GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
97169674 TTCTGTTAAAAATCTGATCAGCCAATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
391 TTCTGTTAAAAATCTGATCAGCCAATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
97169736 TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
1 TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
97169801 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
66 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
*
97169866 TGATCTGTTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
131 TGATCTATTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
97169931 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
196 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
97169996 AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
261 AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
97170061 GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
326 GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
97170126 TTCTGTTAAAAATCTGATCAGCCAATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
391 TTCTGTTAAAAATCTGATCAGCCAATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
97170188 TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
1 TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
97170253 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
66 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
97170318 TGATCTATTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
131 TGATCTATTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
97170383 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
196 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
97170448 AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
261 AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
97170513 GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
326 GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
*
97170578 TTCTGTTAAAAATCTGATCAGCCTATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
391 TTCTGTTAAAAATCTGATCAGCCAATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
97170640 TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
1 TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
97170705 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
66 TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
97170770 TGATCTATTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
131 TGATCTATTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
97170835 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
196 CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
97170900 AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
261 AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
97170965 GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
326 GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
*
97171030 TTCTGTTAAAAATCTGATCAGCCTATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
391 TTCTGTTAAAAATCTGATCAGCCAATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
97171092 TGT
1 TGT
97171095 TAGGACAAGG
Statistics
Matches: 1356, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
452 1356 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.36
Consensus pattern (452 bp):
TGTATGACAATTCCAGCTGAGAGGAGATATTCTTGTTATCTTGTCAATTTTACTGTGTAACTTTG
TTCTCAAACATTTTAGTAAAATCTTGTTCCGACTACAACTGCAACCCCACCTGGTCATGGGACTT
TGATCTATTGTTTGTTCCATAAAATATATATTTTGAGAAAAATGATTGTGTTTTGGATGAATTAG
CAGTGTTATTTAATCATTTCAATGCCAGTTTTCATTTAGAGGCTAATCTCTGCCAAATTAAGTAA
AATCACCACCTTGCAAGCCCAAGTGTCAATGGCATGAACATGTAGATGATCAAAGGAGAACAAAA
GAAACAAATTCCTTCTCTATTATACATGTCAAACTCAAACATCTTGTTGGTGTTTATTGTTTTTA
TTCTGTTAAAAATCTGATCAGCCAATTAAAAAGAATCCAACATTATCACAGTAGTTTATTTG
Found at i:97179443 original size:21 final size:20
Alignment explanation
Indices: 97179397--97179444 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
97179387 CTATTTCATC
**
97179397 TTTT-AATTTTGAAACATTT
1 TTTTAAATTTTGAAACATAA
97179416 TTCTTAAATTTTGAAACCATAA
1 TT-TTAAATTTTGAAA-CATAA
97179438 TTTTAAA
1 TTTTAAA
97179445 CTCCAAACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 2 0.08
20 2 0.08
21 15 0.62
22 5 0.21
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.50
Consensus pattern (20 bp):
TTTTAAATTTTGAAACATAA
Found at i:97180728 original size:16 final size:16
Alignment explanation
Indices: 97180709--97180750 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
97180699 TTACTTGATC
97180709 AAAATTAATTTTTCCA
1 AAAATTAATTTTTCCA
97180725 AAAATTAATTTTTCCA
1 AAAATTAATTTTTCCA
*
97180741 AAAATCAATT
1 AAAATTAATT
97180751 AGATTTTCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (16 bp):
AAAATTAATTTTTCCA
Found at i:97180734 original size:20 final size:18
Alignment explanation
Indices: 97180709--97180762 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 18
97180699 TTACTTGATC
97180709 AAAATTAATTTTTCC--A
1 AAAATTAATTTTTCCAAA
97180725 AAAATTAATTTTTCCAAA
1 AAAATTAATTTTTCCAAA
97180743 AATCAATTAGA-TTTTCCAAA
1 AA--AATTA-ATTTTTCCAAA
97180763 TTAAGTTTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
16 15 0.45
18 3 0.09
20 14 0.42
21 1 0.03
ACGTcount: A:0.46, C:0.13, G:0.02, T:0.39
Consensus pattern (18 bp):
AAAATTAATTTTTCCAAA
Found at i:97181902 original size:15 final size:15
Alignment explanation
Indices: 97181878--97181909 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
97181868 TATGCATGCA
*
97181878 AAATATAAAAGACAT
1 AAATACAAAAGACAT
97181893 AAATACAAAAGACAT
1 AAATACAAAAGACAT
97181908 AA
1 AA
97181910 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:97182896 original size:51 final size:51
Alignment explanation
Indices: 97182833--97182937 Score: 201
Period size: 51 Copynumber: 2.1 Consensus size: 51
97182823 ACACTATCTT
*
97182833 TTGGAGATTGATTGTTTGAATGTTGAGCTACCTTAAGGATCTCCTCTTTGG
1 TTGGAGATTGATTGTCTGAATGTTGAGCTACCTTAAGGATCTCCTCTTTGG
97182884 TTGGAGATTGATTGTCTGAATGTTGAGCTACCTTAAGGATCTCCTCTTTGG
1 TTGGAGATTGATTGTCTGAATGTTGAGCTACCTTAAGGATCTCCTCTTTGG
97182935 TTG
1 TTG
97182938 TTAAACCGTC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.19, C:0.14, G:0.26, T:0.41
Consensus pattern (51 bp):
TTGGAGATTGATTGTCTGAATGTTGAGCTACCTTAAGGATCTCCTCTTTGG
Found at i:97184087 original size:16 final size:17
Alignment explanation
Indices: 97184058--97184092 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
97184048 ACTTTCTTTG
97184058 TTCAAAAATAATTTTTA
1 TTCAAAAATAATTTTTA
97184075 TTCAAAAAT-ATTTTTA
1 TTCAAAAATAATTTTTA
97184091 TT
1 TT
97184093 TGTTATATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (17 bp):
TTCAAAAATAATTTTTA
Found at i:97184111 original size:24 final size:22
Alignment explanation
Indices: 97184068--97184111 Score: 52
Period size: 24 Copynumber: 1.9 Consensus size: 22
97184058 TTCAAAAATA
*
97184068 ATTTTTATTCAAAAATATTTTT
1 ATTTTTATTCAAAAAAATTTTT
*
97184090 ATTTGTTATATCAAAACAATTT
1 ATTT-TTAT-TCAAAAAAATTT
97184112 ATCATATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.22
23 4 0.22
24 10 0.56
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (22 bp):
ATTTTTATTCAAAAAAATTTTT
Found at i:97184581 original size:15 final size:15
Alignment explanation
Indices: 97184556--97184606 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
97184546 TAACAAAATC
*
97184556 ATAAT-TATATTAAT
1 ATAATATATATTAAA
97184570 ATAATATATATTAAA
1 ATAATATATATTAAA
* *
97184585 ATAATATTTATCTTAA
1 ATAATATATAT-TAAA
97184601 ATAATA
1 ATAATA
97184607 ATTAAAGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
14 5 0.16
15 18 0.56
16 9 0.28
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAATATATATTAAA
Found at i:97190794 original size:20 final size:20
Alignment explanation
Indices: 97190769--97190810 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
97190759 TCAAACTCTT
97190769 ATGACCTCAAAAACATAAAA
1 ATGACCTCAAAAACATAAAA
97190789 ATGACCTCAAAAACATAAAA
1 ATGACCTCAAAAACATAAAA
97190809 AT
1 AT
97190811 TATAAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.60, C:0.19, G:0.05, T:0.17
Consensus pattern (20 bp):
ATGACCTCAAAAACATAAAA
Found at i:97190990 original size:14 final size:15
Alignment explanation
Indices: 97190955--97190996 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
97190945 CTTATATACT
*
97190955 TTAATTAAAAGTTAA
1 TTAATTATAAGTTAA
*
97190970 TTTATTATAAG-TAA
1 TTAATTATAAGTTAA
97190984 TTAATTAT-AGTTA
1 TTAATTATAAGTTA
97190997 TAATTAACTG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 2 0.09
14 12 0.52
15 9 0.39
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (15 bp):
TTAATTATAAGTTAA
Found at i:97192332 original size:22 final size:21
Alignment explanation
Indices: 97192297--97192410 Score: 80
Period size: 19 Copynumber: 5.7 Consensus size: 21
97192287 AAAAGGTATC
* *
97192297 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
97192318 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
97192341 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
97192360 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
97192378 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
97192397 TGCATATCATATCT
1 TACAAATCATATCT
97192411 AAGATTGCAT
Statistics
Matches: 82, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
18 17 0.21
19 36 0.44
21 4 0.05
22 15 0.18
23 10 0.12
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:97192340 original size:23 final size:22
Alignment explanation
Indices: 97192297--97192354 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
97192287 AAAAGGTATC
* *
97192297 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
97192318 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
97192341 TGCATATCATATCT
1 TACAAATCATATCT
97192355 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:97192357 original size:19 final size:19
Alignment explanation
Indices: 97192333--97192425 Score: 179
Period size: 19 Copynumber: 4.9 Consensus size: 19
97192323 AATCATATCT
97192333 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
97192352 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
97192370 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
97192389 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
97192408 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
97192426 TGAAGATTAT
Statistics
Matches: 73, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
18 18 0.25
19 55 0.75
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:97192379 original size:37 final size:38
Alignment explanation
Indices: 97192326--97192425 Score: 179
Period size: 37 Copynumber: 2.7 Consensus size: 38
97192316 ATTACAAAAT
97192326 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
97192362 CA-ATCATATCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
97192399 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTGCATATCAT
97192426 TGAAGATTAT
Statistics
Matches: 61, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
35 3 0.05
36 3 0.05
37 31 0.51
38 24 0.39
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:97192445 original size:56 final size:56
Alignment explanation
Indices: 97192326--97192434 Score: 163
Period size: 56 Copynumber: 2.0 Consensus size: 56
97192316 ATTACAAAAT
* *
97192326 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTGCAATCATATCGAAGATTA
97192380 CATATCATATCTAAGATTGCATATCATATCTAAGATTGCATATCAT-T-GAAGATTA
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTGCA-ATCATATCGAAGATTA
97192435 TATTTCCATA
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
54 6 0.12
55 7 0.14
56 32 0.64
57 5 0.10
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (56 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTGCAATCATATCGAAGATTA
Found at i:97192581 original size:21 final size:20
Alignment explanation
Indices: 97192544--97192582 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
97192534 TTGGACTTCG
**
97192544 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGAATTATTAT
97192564 TTTTGTTTTTGGAATTATT
1 TTTT-TTTTTGGAATTATT
97192583 TCTGGGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.13, C:0.00, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGAATTATTAT
Found at i:97192830 original size:45 final size:45
Alignment explanation
Indices: 97192775--97193048 Score: 259
Period size: 45 Copynumber: 6.1 Consensus size: 45
97192765 AGAAGGCGAT
* * * *
97192775 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATATAGAGACGGCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
*
97192820 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCTAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * *
97192865 ATCTGCT-TCTTCAATCTACTCCCCGTCTAATACAGATATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
97192909 ATCTGTTATCTCCGATTTGCTTCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * * * *
97192954 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACATATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAA
* *
97192999 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
97193046 ATC
1 ATC
97193049 ATCTTGGATC
Statistics
Matches: 183, Mismatches: 37, Indels: 16
0.78 0.16 0.07
Matches are distributed among these distances:
43 6 0.03
44 43 0.23
45 103 0.56
46 1 0.01
47 19 0.10
48 5 0.03
49 6 0.03
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:97192910 original size:89 final size:90
Alignment explanation
Indices: 97192775--97192958 Score: 253
Period size: 89 Copynumber: 2.1 Consensus size: 90
97192765 AGAAGGCGAT
** * * * *
97192775 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATATAGAGACGGCAAATCTGTTATCTTCGATCTGC
1 ATCTGCTATCTTCAATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
*
97192840 TCCCCGTCTAATACAGAGACGCTAA
66 TCCCCGTCTAATACAGAGACGCCAA
* * *
97192865 ATCTGCT-TCTTCAATCTACTCCCCGTCTAATACAGATATGCCAAATCTGTTATCTCCGATTTGC
1 ATCTGCTATCTTCAATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
* *
97192929 TTCCCGTCTAATACAGAGATGCCAA
66 TCCCCGTCTAATACAGAGACGCCAA
97192954 ATCTG
1 ATCTG
97192959 TCATCTTGGA
Statistics
Matches: 82, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
89 75 0.91
90 7 0.09
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.32
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTACTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
TCCCCGTCTAATACAGAGACGCCAA
Found at i:97193117 original size:78 final size:78
Alignment explanation
Indices: 97192988--97193282 Score: 484
Period size: 78 Copynumber: 3.8 Consensus size: 78
97192978 ATGTAAACAT
97192988 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
97193053 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
97193066 ATGAAGGTCCA-ATCTGTTATGTTTTCGATCTGCTCCCCGTCTAATACAGAGATGACAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
97193130 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * *
97193144 ATGAAGGTCAGATCTGCTGTGTCTTTGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
97193209 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * *
97193222 ATGAAGGTGAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
97193283 TGTTTCTTCG
Statistics
Matches: 201, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
77 2 0.01
78 197 0.98
79 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:97193491 original size:78 final size:78
Alignment explanation
Indices: 97193363--97194050 Score: 966
Period size: 78 Copynumber: 8.6 Consensus size: 78
97193353 TGAAAGCCAA
*
97193363 ATCTGCTATGTCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
97193428 CAATGAAGGTCCA-
66 CAATGAAGGT-CAG
* * *
97193441 ATCTGTTATATCTTCGATCTGCTCCCCGTTTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
97193506 CAATGAAGGTCAG
66 CAATGAAGGTCAG
* *
97193519 ATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAA----TCATCTTGGATCT
97193584 GCTTCGATGTAAACACATGAAGGTCAG
62 G---C--T-T---CA-ATGAAGGTCAG
* * *
97193611 ATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATATAGAGATGCCAAATAATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
97193676 CAATGAAGGTCCA-
66 CAATGAAGGT-CAG
* * *
97193689 ATTTGTTATGTCTTCGATATGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
*
97193754 CAATGAAGGTCAA
66 CAATGAAGGTCAG
* * *
97193767 ATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGTCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
*
97193832 CAATGAAGGTCAT
66 CAATGAAGGTCAG
* * *
97193845 CTCTGCTATGTCTTTGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
97193910 CAATGAAGGTCAG
66 CAATGAAGGTCAG
* * *
97193923 ATCTGCTGTGTCTTTGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
97193988 CAATGAAGGTCAG
66 CAATGAAGGTCAG
** * **
97194001 ATCTGCTATGTCTTCGATCTGCTCTTCGTCGAATATGGAGATGCCAAATC
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
97194051 TATTTCTTCA
Statistics
Matches: 551, Mismatches: 42, Indels: 34
0.88 0.07 0.05
Matches are distributed among these distances:
77 4 0.01
78 453 0.82
79 4 0.01
82 15 0.03
83 1 0.00
85 2 0.00
87 1 0.00
88 14 0.03
91 2 0.00
92 55 0.10
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (78 bp):
ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
CAATGAAGGTCAG
Found at i:97193617 original size:248 final size:246
Alignment explanation
Indices: 97193309--97194051 Score: 1052
Period size: 248 Copynumber: 3.1 Consensus size: 246
97193299 TTTCTGACAG
* * * * * *
97193309 TACAGAGATG-CAAA---TCATCTTAGATCTACTTCAACGTAAACACGTGAAAGCCAAATCTGCT
1 TACAGAGATGCCAAATCTTCATCTTGGATCTGCTTC-ATGTAAACACATGAAGGTCAAATCTGCT
* *
97193370 ATGTCTTCGATCTGCTCCCCTTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAA
65 ATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAA
* *
97193435 GGTCCAATCTGTTATATCTTCGATCTGCTCCCCGTTTAATACAGAGATGCCAAATCATCTTGGAT
130 GGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGAT
97193500 CTGCTTCAATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAA
195 CTGCTTCAATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAA
*
97193552 TACAGAGATGCCAAATCTGTCATCTTGGATCTGCTTCGATGTAAACACATGAAGGTCAGATCTGC
1 TACAGAGATGCCAAATCT-TCATCTTGGATCTGCTTC-ATGTAAACACATGAAGGTCAAATCTGC
* *
97193617 TATGTCTTTGATCTGCTCCCCGTCTAATATAGAGATGCCAAATAATCTTGGATCTGCTTCAATGA
64 TATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGA
* *
97193682 AGGTCCAATTTGTTATGTCTTCGATATGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
129 AGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGA
*
97193747 TCTGCTTCAATGAAGGTCAAATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAA
194 TCTGCTTCAATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAA
* **
97193800 TACAGAGATGTCAAA---TCATCTTGGATCTG---C-T-T---CA-ATGAAGGTCATCTCTGCTA
1 TACAGAGATGCCAAATCTTCATCTTGGATCTGCTTCATGTAAACACATGAAGGTCAAATCTGCTA
*
97193853 TGTCTTTGATCTGCTCTCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
66 TGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
* * * *
97193918 GT-CAGATCTGCTGTGTCTTTGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATCTTGGAT
131 GTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGAT
* * ** *
97193982 CTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTTCGTCGAA
195 CTGCTTCAATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAA
**
97194034 TATGGAGATGCCAAATCT
1 TACAGAGATGCCAAATCT
97194052 ATTTCTTCAA
Statistics
Matches: 453, Mismatches: 38, Indels: 24
0.88 0.07 0.05
Matches are distributed among these distances:
233 2 0.00
234 192 0.42
235 2 0.00
238 1 0.00
239 1 0.00
241 1 0.00
243 10 0.02
244 18 0.04
248 226 0.50
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (246 bp):
TACAGAGATGCCAAATCTTCATCTTGGATCTGCTTCATGTAAACACATGAAGGTCAAATCTGCTA
TGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAG
GTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATC
TGCTTCAATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAA
Found at i:97194391 original size:220 final size:220
Alignment explanation
Indices: 97193992--97194557 Score: 871
Period size: 220 Copynumber: 2.6 Consensus size: 220
97193982 CTGCTTCAAT
* * *
97193992 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTTCGTCGAATATGGAGATGCCAAATCTATTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * *
97194057 TTCAATTTATTCTATGATAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
66 TTCAATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* * *
97194122 TGAAGGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
131 TGAAAGCCAAATATGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATAATCTTG
*
97194187 GATCTACTTTGATGTGAAAAAATCC
196 GATCTACTTAGATGTGAAAAAATCC
** *
97194212 GAAGGTTAGATCTTTTATGTCTTCGGTCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
*
97194277 TTCAATTTGTTCTCTGACAGTATAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
66 TTCAATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* *
97194342 TGAAAGCCAAATATGCTATGTCTTCGATCTGTTCCTTGTCAATGCAAGGATGCCAAATAATCTTG
131 TGAAAGCCAAATATGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATAATCTTG
* *
97194407 GATCTACTTAGATGTGAAAACATCT
196 GATCTACTTAGATGTGAAAAAATCC
* * * *
97194432 GAAGGTTAGTTCTGCTATGTCTTAGATCTGCTCTCCGTCAAATATGGAGATGCCAAATTTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * ** * **
97194497 TTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCCACTTCAGCGTAAA
66 TTCAATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAA
97194558 TACCTGAAGG
Statistics
Matches: 313, Mismatches: 33, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
220 313 1.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (220 bp):
GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
TTCAATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
TGAAAGCCAAATATGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATAATCTTG
GATCTACTTAGATGTGAAAAAATCC
Found at i:97203251 original size:23 final size:22
Alignment explanation
Indices: 97203208--97203265 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
97203198 AAAAGGTATC
* *
97203208 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
97203229 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
97203252 TGCATATCATATCT
1 TACAAATCATATCT
97203266 AAGATTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:97203279 original size:22 final size:19
Alignment explanation
Indices: 97203235--97203282 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
97203225 AGATTACAAA
97203235 ATCATATCTTCTAAGATTG
1 ATCATATCTTCTAAGATTG
97203254 --CATATCATATCTAAGATTG
1 ATCATATC-T-TCTAAGATTG
97203273 TATCATATCT
1 -ATCATATCT
97203283 AAGATTGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
17 6 0.25
18 1 0.04
19 10 0.42
21 1 0.04
22 6 0.25
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (19 bp):
ATCATATCTTCTAAGATTG
Found at i:97203323 original size:36 final size:36
Alignment explanation
Indices: 97203247--97203324 Score: 115
Period size: 36 Copynumber: 2.2 Consensus size: 36
97203237 CATATCTTCT
*
97203247 AAGATTGCATATCATATCTAAGATTGTATCATATCT
1 AAGATTGCATATCATATCTAAGATTGTATCATATCG
97203283 AAGATTGCATATCATATCTAAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCTAAGATTG--TATCATATCG
97203319 AAGATT
1 AAGATT
97203325 ATATTTCCAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
36 32 0.82
37 1 0.03
38 6 0.15
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (36 bp):
AAGATTGCATATCATATCTAAGATTGTATCATATCG
Found at i:97203324 original size:17 final size:19
Alignment explanation
Indices: 97203244--97203316 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
97203234 AATCATATCT
97203244 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
97203263 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
97203280 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
97203299 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
97203317 TGAAGATTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.33
19 35 0.67
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:97203472 original size:21 final size:20
Alignment explanation
Indices: 97203435--97203473 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
97203425 TTGGACTTCA
**
97203435 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
97203455 TTTTATTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
97203474 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.13, C:0.03, G:0.13, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:97210253 original size:6 final size:6
Alignment explanation
Indices: 97210209--97210234 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
97210199 CAAATTTTAT
97210209 TAAAAA TAAAAA TAAAAA TAAAAA TA
1 TAAAAA TAAAAA TAAAAA TAAAAA TA
97210235 TTAAATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:97218705 original size:13 final size:13
Alignment explanation
Indices: 97218689--97218713 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97218679 TTAAATCAGT
97218689 TAATTAGTTTAAA
1 TAATTAGTTTAAA
97218702 TAATTAGTTTAA
1 TAATTAGTTTAA
97218714 TAAATAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:97224111 original size:17 final size:17
Alignment explanation
Indices: 97224076--97224129 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
97224066 CCTCCTATTT
* *
97224076 TTTTATTATTTACTCTTA
1 TTTTATT-TTTAATTTTA
97224094 TTTTATTTTTAATTTTA
1 TTTTATTTTTAATTTTA
*
97224111 TTTTCA-TTTCAATTTTA
1 TTTT-ATTTTTAATTTTA
97224128 TT
1 TT
97224130 ATTTTATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 24 0.75
18 8 0.25
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTATTTTTAATTTTA
Found at i:97228419 original size:13 final size:13
Alignment explanation
Indices: 97228403--97228427 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97228393 TTAAATCAGT
97228403 TAATTAGTTTAAA
1 TAATTAGTTTAAA
97228416 TAATTAGTTTAA
1 TAATTAGTTTAA
97228428 TAAATAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:97236140 original size:30 final size:30
Alignment explanation
Indices: 97236105--97236162 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
97236095 CGCGGCCATG
97236105 ACACACGGGCGTGTGG-TCTACCCGTGTGTC
1 ACACACGGGCGTGTGGAT-TACCCGTGTGTC
*
97236135 ACACACGGGTGTGTGGATTACCCGTGTG
1 ACACACGGGCGTGTGGATTACCCGTGTG
97236163 GGACTGCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.16, C:0.26, G:0.34, T:0.24
Consensus pattern (30 bp):
ACACACGGGCGTGTGGATTACCCGTGTGTC
Found at i:97246164 original size:35 final size:35
Alignment explanation
Indices: 97246125--97246240 Score: 117
Period size: 35 Copynumber: 3.3 Consensus size: 35
97246115 AATCCAACCA
* * **
97246125 AAACACACCAATGCTCGTAATAGCTAATCCCTTTG
1 AAACACACCAATGCTCATAAAAGCTAATCCCTCCG
*
97246160 AAACACACCAATGCTCATAAAAGTTAATCCCTCCG
1 AAACACACCAATGCTCATAAAAGCTAATCCCTCCG
* * * ** *
97246195 AAACACACTAATGCCCATAAGAA-CTAGTCCAACCA
1 AAACACACCAATGCTCATAA-AAGCTAATCCCTCCG
97246230 AAACACACCAA
1 AAACACACCAA
97246241 ACAGAGATTA
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
35 65 0.97
36 2 0.03
ACGTcount: A:0.42, C:0.31, G:0.09, T:0.18
Consensus pattern (35 bp):
AAACACACCAATGCTCATAAAAGCTAATCCCTCCG
Found at i:97248372 original size:23 final size:23
Alignment explanation
Indices: 97248310--97248374 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
97248300 AGTGTCGTTT
* *
97248310 TGGTGTGTTTGGGTAGATTATTC
1 TGGTGTGTTTGGGTGGATCATTC
97248333 TGGTGTGTTTGGGTGGATCATTC
1 TGGTGTGTTTGGGTGGATCATTC
* *
97248356 TGGTATGTTTGGTTGGATC
1 TGGTGTGTTTGGGTGGATC
97248375 CGTGTATCCG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.11, C:0.06, G:0.37, T:0.46
Consensus pattern (23 bp):
TGGTGTGTTTGGGTGGATCATTC
Found at i:97252158 original size:42 final size:42
Alignment explanation
Indices: 97252104--97252215 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 42
97252094 ATCCATAATA
* * *
97252104 AACTCGGACCACTCAACGAGCTCAGATGC-CACATATCTCAAG
1 AACTTGGACCACTCAACGAGCTCAGAT-CTCACACATATCAAG
* * * * *
97252146 AACTTGGACCACTCAACAAGTTCGGAATCTCATACATATCACG
1 AACTTGGACCACTCAACGAGCTCAG-ATCTCACACATATCAAG
*
97252189 AAATTGGACCACTCAACGAGCTCAGAT
1 AACTTGGACCACTCAACGAGCTCAGAT
97252216 TGCTTAATTC
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
42 24 0.43
43 32 0.57
ACGTcount: A:0.35, C:0.29, G:0.16, T:0.20
Consensus pattern (42 bp):
AACTTGGACCACTCAACGAGCTCAGATCTCACACATATCAAG
Found at i:97256086 original size:18 final size:19
Alignment explanation
Indices: 97256052--97256105 Score: 62
Period size: 18 Copynumber: 2.9 Consensus size: 19
97256042 AAGAAAGATA
97256052 AATAATAAT-AA-TAAAAT
1 AATAATAATAAACTAAAAT
97256069 AATAATAATAAACT-AAAT
1 AATAATAATAAACTAAAAT
97256087 AAT-ATCAATAAACTTAAAA
1 AATAAT-AATAAAC-TAAAA
97256106 GGTAATTGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
17 11 0.34
18 16 0.50
19 2 0.06
20 3 0.09
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (19 bp):
AATAATAATAAACTAAAAT
Found at i:97256090 original size:3 final size:3
Alignment explanation
Indices: 97256001--97256079 Score: 51
Period size: 3 Copynumber: 26.7 Consensus size: 3
97255991 TTGAAGAGAA
* * * *
97256001 AAT AAT AAT AAT AAT AAT AA- AAC AACT AA- AAC AA- AATT AAA AAG
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AA-T AAT AAT
97256045 AA- AGAT AAAT AAT AAT AAT AA- AAT AAT AAT AAT AA
1 AAT A-AT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
97256080 ACTAAATAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 18
0.75 0.04 0.21
Matches are distributed among these distances:
2 9 0.14
3 48 0.75
4 6 0.09
5 1 0.02
ACGTcount: A:0.71, C:0.04, G:0.03, T:0.23
Consensus pattern (3 bp):
AAT
Found at i:97256221 original size:16 final size:16
Alignment explanation
Indices: 97256172--97256234 Score: 76
Period size: 16 Copynumber: 3.9 Consensus size: 16
97256162 TAGCAAAATT
97256172 AAAATTAAAAT-TAAA
1 AAAATTAAAATATAAA
* *
97256187 ATAA-TAAAAGTATATA
1 AAAATTAAAA-TATAAA
97256203 AAAATTAAAATATAAA
1 AAAATTAAAATATAAA
97256219 AAAATTAGAAATATAA
1 AAAATTA-AAATATAA
97256235 GTATAAGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
14 5 0.12
15 4 0.10
16 18 0.45
17 13 0.32
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (16 bp):
AAAATTAAAATATAAA
Found at i:97256310 original size:22 final size:20
Alignment explanation
Indices: 97256266--97256317 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 20
97256256 TATTAATTAG
* *
97256266 TAAAATAAAAATAAATCATA
1 TAAAATAAAAATAAATAAAA
97256286 TAACAATTAAAAATAAATAAAA
1 TAA-AA-TAAAAATAAATAAAA
97256308 TAAAATAAAA
1 TAAAATAAAA
97256318 TTGGGGTGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 8 0.29
21 4 0.14
22 16 0.57
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.23
Consensus pattern (20 bp):
TAAAATAAAAATAAATAAAA
Found at i:97260557 original size:30 final size:30
Alignment explanation
Indices: 97260513--97260573 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
97260503 CACGGGCTGG
* * *
97260513 CACATGGGCATGTGGTCTGCCTGTGTGGAT
1 CACATGGGCATGTGGCCTGCCCGTGTAGAT
* *
97260543 CACATTGGCGTGTGGCCTGCCCGTGTAGAT
1 CACATGGGCATGTGGCCTGCCCGTGTAGAT
97260573 C
1 C
97260574 CTGAAAACTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.13, C:0.25, G:0.34, T:0.28
Consensus pattern (30 bp):
CACATGGGCATGTGGCCTGCCCGTGTAGAT
Found at i:97266863 original size:22 final size:23
Alignment explanation
Indices: 97266816--97266864 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
97266806 TTGTAAAACC
*
97266816 TAAAGATGAAATAAAAATAGTAT
1 TAAAGATGAAATAAAAATAATAT
97266839 TAAAGA-GAAATAAAAAGTAAT-T
1 TAAAGATGAAATAAAAA-TAATAT
97266861 TAAA
1 TAAA
97266865 AACATAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.24
Consensus pattern (23 bp):
TAAAGATGAAATAAAAATAATAT
Found at i:97268239 original size:26 final size:27
Alignment explanation
Indices: 97268209--97268263 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
97268199 TCCCTAATAT
* *
97268209 TAAACATAACAAAGACTCA-AATAAAG
1 TAAACAAAACAAAGAATCAGAATAAAG
* *
97268235 TAAACAAAATAAAGAATTAGAATAAAG
1 TAAACAAAACAAAGAATCAGAATAAAG
97268262 TA
1 TA
97268264 GGGATAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.64, C:0.09, G:0.09, T:0.18
Consensus pattern (27 bp):
TAAACAAAACAAAGAATCAGAATAAAG
Found at i:97268327 original size:15 final size:17
Alignment explanation
Indices: 97268304--97268335 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
97268294 AAGTAATGCT
97268304 AACACATAA-AATGAAA
1 AACACATAATAATGAAA
97268320 AACA-ATAATAATGAAA
1 AACACATAATAATGAAA
97268336 GTTAGAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (17 bp):
AACACATAATAATGAAA
Found at i:97273166 original size:39 final size:40
Alignment explanation
Indices: 97273059--97273168 Score: 109
Period size: 38 Copynumber: 2.8 Consensus size: 40
97273049 GACCTCGAGT
* **
97273059 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGATAGAGC
** ** *
97273100 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
97273138 CGATGAGACACTGGGTGTCAACTATTACTTC
1 CGATGAGACACTGGGTGTCAACTATTACTTC
97273169 AAACTATCCG
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
38 19 0.35
39 18 0.33
40 1 0.02
41 15 0.27
42 2 0.04
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
Found at i:97279228 original size:14 final size:13
Alignment explanation
Indices: 97279211--97279274 Score: 58
Period size: 14 Copynumber: 4.6 Consensus size: 13
97279201 TTAGGTTTTA
97279211 TATATTAAATTAT
1 TATATTAAATTAT
*
97279224 ATATATTATAATGAT
1 -TATATTA-AATTAT
*
97279239 TATTATTATAGTT-T
1 TA-TATTA-AATTAT
97279253 TATATTAAATTAT
1 TATATTAAATTAT
97279266 TATGATTAA
1 TAT-ATTAA
97279275 TTAATTGATA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
12 3 0.07
13 9 0.21
14 17 0.40
15 13 0.31
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (13 bp):
TATATTAAATTAT
Found at i:97279232 original size:21 final size:20
Alignment explanation
Indices: 97279208--97279273 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 20
97279198 TATTTAGGTT
97279208 TTATATATTAAATTATATATA
1 TTATATATTAAATTAT-TATA
97279229 TTATAATGATT--ATTATTATA
1 TTAT-AT-ATTAAATTATTATA
*
97279249 GTTTTATATTAAATTATTATGA
1 -TTATATATTAAATTATTAT-A
97279271 TTA
1 TTA
97279274 ATTAATTGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
19 3 0.08
20 6 0.16
21 22 0.59
22 3 0.08
23 3 0.08
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (20 bp):
TTATATATTAAATTATTATA
Found at i:97295251 original size:18 final size:17
Alignment explanation
Indices: 97295230--97295263 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
97295220 TATTTCTCTC
97295230 TTTTTATTTTTATTTTTA
1 TTTTTA-TTTTATTTTTA
97295248 TTTTTATTTTATTTTT
1 TTTTTATTTTATTTTT
97295264 TCATTTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTTATTTTATTTTTA
Found at i:97295264 original size:18 final size:19
Alignment explanation
Indices: 97295230--97295270 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
97295220 TATTTCTCTC
97295230 TTTTTATTTTTATTTTT-A
1 TTTTTATTTTTATTTTTCA
97295248 TTTTTA-TTTTATTTTTTCA
1 TTTTTATTTTTA-TTTTTCA
97295267 TTTT
1 TTTT
97295271 CCTTTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.24
18 11 0.52
19 5 0.24
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (19 bp):
TTTTTATTTTTATTTTTCA
Found at i:97295271 original size:6 final size:6
Alignment explanation
Indices: 97295230--97295263 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
97295220 TATTTCTCTC
97295230 TTTTTA TTTTTA TTTTTA TTTTTA -TTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
97295264 TCATTTTCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:97296663 original size:49 final size:49
Alignment explanation
Indices: 97296582--97296822 Score: 284
Period size: 49 Copynumber: 4.9 Consensus size: 49
97296572 CAAAGCTATT
* *
97296582 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATC
* * * * **
97296631 CGGTATACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATC
* * * * **
97296681 TGATACACGTAGTAGTCTGCACTTAGTACTACACACGTGATTGAAGTTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATC
* * *
97296732 GGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACTAATTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATC
* *
97296781 TGGTACACATAGTAGCCTACACTTAGTACTACACACGTGACC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
97296823 TCACAATATA
Statistics
Matches: 160, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 78 0.49
50 45 0.28
51 37 0.23
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATC
Found at i:97297668 original size:20 final size:20
Alignment explanation
Indices: 97297631--97297668 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
97297621 TAATGGGGAG
*
97297631 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
97297651 CAAGAA-ATCAAAGCTGGA
1 CAAGAATATC-AAGCTGGA
97297669 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:97299392 original size:46 final size:46
Alignment explanation
Indices: 97299340--97299659 Score: 595
Period size: 46 Copynumber: 7.0 Consensus size: 46
97299330 AGTGTGCTCT
*
97299340 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
97299386 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
*
97299432 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
*
97299478 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
*
97299524 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
97299570 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
*
97299616 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
97299660 TCATGTCAAA
Statistics
Matches: 268, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 268 1.00
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
Found at i:97302692 original size:15 final size:15
Alignment explanation
Indices: 97302669--97302708 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
97302659 CAAGCCCAGA
97302669 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
97302684 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
97302699 ATAAGGAAAT
1 ATAAGGAAAT
97302709 ACCATTTACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.55, C:0.10, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:97309283 original size:18 final size:18
Alignment explanation
Indices: 97309260--97309295 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
97309250 CTCTATTATA
* *
97309260 TAGGCTTTTGCTTTTGCT
1 TAGGCTTATGCTATTGCT
97309278 TAGGCTTATGCTATTGCT
1 TAGGCTTATGCTATTGCT
97309296 AGCTATTAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.17, G:0.22, T:0.50
Consensus pattern (18 bp):
TAGGCTTATGCTATTGCT
Found at i:97320336 original size:28 final size:28
Alignment explanation
Indices: 97320294--97320354 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
97320284 CTGATTTAGC
* *
97320294 TAGGGTTTTAGTTTCTGAAACCAAAGTT
1 TAGGGTTTCAATTTCTGAAACCAAAGTT
97320322 TAGGGTTTCAATTTCTGAAACCAAAGTT
1 TAGGGTTTCAATTTCTGAAACCAAAGTT
97320350 T-GGGT
1 TAGGGT
97320355 CATTTGAGCC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 4 0.13
28 27 0.87
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (28 bp):
TAGGGTTTCAATTTCTGAAACCAAAGTT
Found at i:97321985 original size:38 final size:39
Alignment explanation
Indices: 97321911--97321987 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
97321901 GTATTGTGTT
97321911 AATCTCTACATTTGCGTCATAATTTTTTTATCCAATACA
1 AATCTCTACATTTGCGTCATAATTTTTTTATCCAATACA
97321950 AATCTCTACATTTGCGTCATAA-TTTTTTATCCAATACA
1 AATCTCTACATTTGCGTCATAATTTTTTTATCCAATACA
97321988 TAAATTAATC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
38 16 0.42
39 22 0.58
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.43
Consensus pattern (39 bp):
AATCTCTACATTTGCGTCATAATTTTTTTATCCAATACA
Found at i:97323824 original size:8 final size:8
Alignment explanation
Indices: 97323813--97323841 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
97323803 TTTTGCATTT
97323813 TTTTTTTC
1 TTTTTTTC
97323821 TTTTTTTC
1 TTTTTTTC
97323829 TTTTTTT-
1 TTTTTTTC
97323836 TTTTTT
1 TTTTTT
97323842 ACGGGAAACG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 6 0.29
8 15 0.71
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (8 bp):
TTTTTTTC
Found at i:97329133 original size:43 final size:43
Alignment explanation
Indices: 97329071--97329171 Score: 141
Period size: 42 Copynumber: 2.3 Consensus size: 43
97329061 CTTTTTTAAG
* *
97329071 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCCAA
1 AAACGCCGCTAAAGAACATGACCTTTAACGACGC-TTTCCCCAA
* *
97329115 AAACGCCGCTAACG-ACATGATCTTTAACGACGCTTTCCCCAA
1 AAACGCCGCTAAAGAACATGACCTTTAACGACGCTTTCCCCAA
*
97329157 AAACGCCACTAAAGA
1 AAACGCCGCTAAAGA
97329172 CCATATATAT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
42 21 0.42
43 16 0.32
44 13 0.26
ACGTcount: A:0.34, C:0.32, G:0.16, T:0.19
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAACGACGCTTTCCCCAA
Found at i:97333314 original size:18 final size:18
Alignment explanation
Indices: 97333291--97333334 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
97333281 AGGGATTTTG
* *
97333291 GGGGAAATTTAG-GGATT
1 GGGGAAATGTAGAGAATT
97333308 AGGGGAAATGTAGAGAATT
1 -GGGGAAATGTAGAGAATT
97333327 GGGGAAAT
1 GGGGAAAT
97333335 CTGTTTTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.36, C:0.00, G:0.41, T:0.23
Consensus pattern (18 bp):
GGGGAAATGTAGAGAATT
Found at i:97333560 original size:57 final size:57
Alignment explanation
Indices: 97333499--97333611 Score: 217
Period size: 57 Copynumber: 2.0 Consensus size: 57
97333489 AAAAAACGCC
*
97333499 ACTAATCTCTTAATTTTCATATTTATTTTTATTTGTTATAATAGTGTTTTTTGTGGT
1 ACTAATCTCTCAATTTTCATATTTATTTTTATTTGTTATAATAGTGTTTTTTGTGGT
97333556 ACTAATCTCTCAATTTTCATATTTATTTTTATTTGTTATAATAGTGTTTTTTGTGG
1 ACTAATCTCTCAATTTTCATATTTATTTTTATTTGTTATAATAGTGTTTTTTGTGG
97333612 CATCTTTTAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.23, C:0.08, G:0.11, T:0.58
Consensus pattern (57 bp):
ACTAATCTCTCAATTTTCATATTTATTTTTATTTGTTATAATAGTGTTTTTTGTGGT
Found at i:97333818 original size:73 final size:73
Alignment explanation
Indices: 97333556--97333810 Score: 406
Period size: 74 Copynumber: 3.5 Consensus size: 73
97333546 TTTTTGTGGT
*
97333556 ACTAATCTCTCAATTTTCATATTTATTTTTATTTGTTATAATAGTGTTTTTTGTGGCATCTTTTA
1 ACTAATCTCTCAATTTTCATATTTATTTTTATTTGTTATAATAGTGTTTTTTGTGGCGT-TTTTA
*
97333621 AAAAATGCC
65 AAAAACGCC
* *
97333630 ACTAATATCTTAATTTTCATATTTATTTTTATTTGTTATAA-AGTGTTTTTTGTGGCGTTTTTTT
1 ACTAATCTCTCAATTTTCATATTTATTTTTATTTGTTATAATAGTGTTTTTTGTGGCG--TTTTT
*
97333694 TAAAAACGCC
64 AAAAAACGCC
97333704 ACTAATCTCTCAATTTTCATATTTATTTTTATTTGTTATAATAGTGTTTTTTGTGGCGTTTTTAA
1 ACTAATCTCTCAATTTTCATATTTATTTTTATTTGTTATAATAGTGTTTTTTGTGGCGTTTTT-A
97333769 AAAAACGCC
65 AAAAACGCC
*
97333778 ACTAATCTCTTAA-TTTCATATTTATTTTTATTT
1 ACTAATCTCTCAATTTTCATATTTATTTTTATTT
97333811 AATATAATTT
Statistics
Matches: 168, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
73 40 0.24
74 111 0.66
75 17 0.10
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.53
Consensus pattern (73 bp):
ACTAATCTCTCAATTTTCATATTTATTTTTATTTGTTATAATAGTGTTTTTTGTGGCGTTTTTAA
AAAACGCC
Found at i:97334189 original size:21 final size:21
Alignment explanation
Indices: 97334163--97334314 Score: 126
Period size: 21 Copynumber: 6.9 Consensus size: 21
97334153 ACTCTTAAAC
* *
97334163 CTTAAACCCTAAATCATATAT
1 CTTAAACCATAAACCATATAT
* *
97334184 CTTAAACCATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
*
97334209 CCTAAATCC-TAAACCATATAT
1 CTTAAA-CCATAAACCATATAT
*
97334230 CTTAAACCTTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* *
97334251 CTTAAACCATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
**
97334276 CTTAAACCCCAAACCATATAT
1 CTTAAACCATAAACCATATAT
97334297 CTTAAACCATAAACCATA
1 CTTAAACCATAAACCATA
97334315 AACTATAATG
Statistics
Matches: 104, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
20 2 0.02
21 63 0.61
22 6 0.06
24 5 0.05
25 26 0.25
26 2 0.02
ACGTcount: A:0.44, C:0.26, G:0.01, T:0.28
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:97334199 original size:46 final size:46
Alignment explanation
Indices: 97334147--97334237 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
97334137 CTTCAAATAC
* * *
97334147 TAGTTAACTCTTAAACCTTAAACCCTAAATCATATATCTTAAACCA
1 TAGTTAACTCATAAACCCTAAACCCTAAACCATATATCTTAAACCA
*
97334193 TAGTTAACTCATAAACCCTAAATCCTAAACCATATATCTTAAACC
1 TAGTTAACTCATAAACCCTAAACCCTAAACCATATATCTTAAACC
97334238 TTAAACCATA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.42, C:0.25, G:0.02, T:0.31
Consensus pattern (46 bp):
TAGTTAACTCATAAACCCTAAACCCTAAACCATATATCTTAAACCA
Found at i:97334251 original size:67 final size:67
Alignment explanation
Indices: 97334163--97334314 Score: 250
Period size: 67 Copynumber: 2.3 Consensus size: 67
97334153 ACTCTTAAAC
* * * *
97334163 CTTAAACCCTAAATCATATATCTTAAACCATAGTTAACTCATAAACCCTAAATCCTAAACCATAT
1 CTTAAACCATAAACCATATATCTTAAACCATAGTTAACTCATAAACCCTAAACCCCAAACCATAT
97334228 AT
66 AT
* *
97334230 CTTAAACCTTAAACCATATATCTTAAACCATAGTTAACTCATAAACCTTAAACCCCAAACCATAT
1 CTTAAACCATAAACCATATATCTTAAACCATAGTTAACTCATAAACCCTAAACCCCAAACCATAT
97334295 AT
66 AT
97334297 CTTAAACCATAAACCATA
1 CTTAAACCATAAACCATA
97334315 AACTATAATG
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 79 1.00
ACGTcount: A:0.44, C:0.26, G:0.01, T:0.28
Consensus pattern (67 bp):
CTTAAACCATAAACCATATATCTTAAACCATAGTTAACTCATAAACCCTAAACCCCAAACCATAT
AT
Found at i:97334322 original size:7 final size:7
Alignment explanation
Indices: 97334202--97334322 Score: 55
Period size: 7 Copynumber: 16.7 Consensus size: 7
97334192 ATAGTTAACT
97334202 CATAAAC
1 CATAAAC
*
97334209 CCTAAATC
1 CATAAA-C
97334217 C-TAAAC
1 CATAAAC
* *
97334223 CATATAT
1 CATAAAC
*
97334230 CTTAAAC
1 CATAAAC
*
97334237 CTTAAAC
1 CATAAAC
* *
97334244 CATATAT
1 CATAAAC
*
97334251 CTTAAAC
1 CATAAAC
97334258 CATAGTTAAC
1 CATA---AAC
97334268 TCATAAAC
1 -CATAAAC
*
97334276 CTTAAAC
1 CATAAAC
**
97334283 CCCAAAC
1 CATAAAC
* *
97334290 CATATAT
1 CATAAAC
*
97334297 CTTAAAC
1 CATAAAC
97334304 CATAAAC
1 CATAAAC
97334311 CATAAAC
1 CATAAAC
*
97334318 TATAA
1 CATAA
97334323 TGATAATTAA
Statistics
Matches: 83, Mismatches: 25, Indels: 12
0.69 0.21 0.10
Matches are distributed among these distances:
6 2 0.02
7 69 0.83
8 5 0.06
10 3 0.04
11 4 0.05
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.26
Consensus pattern (7 bp):
CATAAAC
Found at i:97334616 original size:40 final size:41
Alignment explanation
Indices: 97334479--97334616 Score: 174
Period size: 41 Copynumber: 3.4 Consensus size: 41
97334469 GTTATATGAC
*
97334479 TTTTAGCGTCGTTTTGT-CAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTT-TCCAAAAGCGCCGCTAATGCTCTGGT
* *
97334520 TTTTAGCGACATTTTTCCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
* * *
97334561 TTTTAGCGGCGTTTTTACTAAAA-CTCCGCTATTGCTCTGG-
1 TTTTAGCGGCGTTTTT-CCAAAAGCGCCGCTAATGCTCTGGT
*
97334601 TTTTAGTGGCGTTTTT
1 TTTTAGCGGCGTTTTT
97334617 TGATAAAACA
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
40 16 0.18
41 66 0.76
42 5 0.06
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
Found at i:97334617 original size:41 final size:41
Alignment explanation
Indices: 97334479--97334633 Score: 140
Period size: 41 Copynumber: 3.8 Consensus size: 41
97334469 GTTATATGAC
* *
97334479 TTTTAGCGTCG-TTTTG-TCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTGAT-AAAA-CACCGCTAATGCTCTGGT
* * * * *
97334520 TTTTAGCGACATTTTTCCA-AAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTT-GATAAAACACCGCTAATGCTCTGGT
* *
97334561 TTTTAGCGGCGTTTTT-ACTAAAACTCCGCTATTGCTCTGG-
1 TTTTAGCGGCGTTTTTGA-TAAAACACCGCTAATGCTCTGGT
*
97334601 TTTTAGTGGCGTTTTTTGATAAAACACCGCTAA
1 TTTTAGCGGCG-TTTTTGATAAAACACCGCTAA
97334634 AAACGCCGTT
Statistics
Matches: 95, Mismatches: 12, Indels: 14
0.79 0.10 0.12
Matches are distributed among these distances:
39 1 0.01
40 10 0.11
41 76 0.80
42 8 0.08
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTTGATAAAACACCGCTAATGCTCTGGT
Found at i:97336173 original size:39 final size:39
Alignment explanation
Indices: 97336119--97336233 Score: 194
Period size: 39 Copynumber: 2.9 Consensus size: 39
97336109 TGTGTATCTG
97336119 GACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCA
1 GACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCA
*
97336158 GACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCG
1 GACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCA
* * *
97336197 GACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATC
1 GACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATC
97336234 TGGGCTAAAG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (39 bp):
GACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCA
Found at i:97336249 original size:39 final size:39
Alignment explanation
Indices: 97336113--97336274 Score: 191
Period size: 39 Copynumber: 4.2 Consensus size: 39
97336103 ATTTGATGTG
* * *
97336113 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
* * *
97336152 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
*
97336191 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
* * * * * * *
97336230 TATCTGGGCTAAAGTTCCGCAGGCTTCGAGCTGGTATTA
1 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
97336269 TA-CCGG
1 TATCCGG
97336275 GTTTAAATTC
Statistics
Matches: 108, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
38 3 0.03
39 105 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAATTA
Found at i:97338630 original size:15 final size:15
Alignment explanation
Indices: 97338610--97338639 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
97338600 AACCATAAAT
*
97338610 CATAATTCCTAAACC
1 CATAATTCATAAACC
97338625 CATAATTCATAAACC
1 CATAATTCATAAACC
97338640 TTAAAATAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.27
Consensus pattern (15 bp):
CATAATTCATAAACC
Found at i:97338696 original size:14 final size:14
Alignment explanation
Indices: 97338663--97338696 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
97338653 TCCTAAAACT
*
97338663 TAAACACTAAACCC
1 TAAACTCTAAACCC
97338677 TAAACTCTAAACCC
1 TAAACTCTAAACCC
97338691 TAAACT
1 TAAACT
97338697 ATAATTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACTCTAAACCC
Found at i:97339290 original size:40 final size:40
Alignment explanation
Indices: 97339246--97339321 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
97339236 AAAAGGCGCT
* * * *
97339246 GCTAATGGTCGACCTATAGCGGTGTTTTTTAAAAAGTTCC
1 GCTAATGCTCAACCTATAGCGGTATTTTTCAAAAAGTTCC
*
97339286 GCTAATGCTCAATCTATAGCGGTATTTTTCAAAAAG
1 GCTAATGCTCAACCTATAGCGGTATTTTTCAAAAAG
97339322 AGTTAACATA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (40 bp):
GCTAATGCTCAACCTATAGCGGTATTTTTCAAAAAGTTCC
Found at i:97339417 original size:40 final size:40
Alignment explanation
Indices: 97339362--97339489 Score: 184
Period size: 40 Copynumber: 3.2 Consensus size: 40
97339352 ATTTTTTTGT
* * *
97339362 GGCGTTTTTCAAAAAGCGCTGGTAATGGTCGACCTATAGC
1 GGCGTTTTTCAAAAAGCGCTGCTAATGCTCGATCTATAGC
* * *
97339402 GGCGTTTTTCAAAAAGCACTTCCAATGCTCGATCTATAGC
1 GGCGTTTTTCAAAAAGCGCTGCTAATGCTCGATCTATAGC
**
97339442 GGCGTTTTTCAAAAAGCGCTGCTAATGCTCGATCTATAAT
1 GGCGTTTTTCAAAAAGCGCTGCTAATGCTCGATCTATAGC
97339482 GGCGTTTT
1 GGCGTTTT
97339490 AATCCAAACA
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAGCGCTGCTAATGCTCGATCTATAGC
Found at i:97339450 original size:136 final size:136
Alignment explanation
Indices: 97339203--97339457 Score: 375
Period size: 136 Copynumber: 1.9 Consensus size: 136
97339193 GCTCATCGAT
*
97339203 GGCGTTGTGCTTAATATTTTTGCAGCGTTTTTCAAAAGGCGCTGCTAATGGTCGACCTATAGCGG
1 GGCGTTGTGCTTAATATTTTTGCAGCGTTTTTCAAAAAGCGCTGCTAATGGTCGACCTATAGCGG
* * ** * *
97339268 TGTTTTTTAAAAAGTTCCGCTAATGCTCAATCTATAGCGGTATTTTTCAAAAAGAGTTAACATAA
66 CGTTTTTCAAAAAGCACCGCCAATGCTCAATCTATAGCGGCATTTTTCAAAAAGAGTTAACATAA
97339333 AACAAC
131 AACAAC
* ** *
97339339 GGCGTTGTGCTTAATTTTTTTGTGGCGTTTTTCAAAAAGCGCTGGTAATGGTCGACCTATAGCGG
1 GGCGTTGTGCTTAATATTTTTGCAGCGTTTTTCAAAAAGCGCTGCTAATGGTCGACCTATAGCGG
** * *
97339404 CGTTTTTCAAAAAGCACTTCCAATGCTCGATCTATAGCGGCGTTTTTCAAAAAG
66 CGTTTTTCAAAAAGCACCGCCAATGCTCAATCTATAGCGGCATTTTTCAAAAAG
97339458 CGCTGCTAAT
Statistics
Matches: 104, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
136 104 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.34
Consensus pattern (136 bp):
GGCGTTGTGCTTAATATTTTTGCAGCGTTTTTCAAAAAGCGCTGCTAATGGTCGACCTATAGCGG
CGTTTTTCAAAAAGCACCGCCAATGCTCAATCTATAGCGGCATTTTTCAAAAAGAGTTAACATAA
AACAAC
Found at i:97342160 original size:20 final size:21
Alignment explanation
Indices: 97342135--97342175 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
97342125 CTTTATAATT
97342135 TATTAT-TTTTTCAA-AATATA
1 TATTATATTTTT-AATAATATA
97342155 TATTATATTTTTAATAATATA
1 TATTATATTTTTAATAATATA
97342176 ATAAGTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TATTATATTTTTAATAATATA
Found at i:97342350 original size:20 final size:20
Alignment explanation
Indices: 97342325--97342364 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
97342315 CGTAAAATGA
*
97342325 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
97342345 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
97342365 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:97342354 original size:34 final size:35
Alignment explanation
Indices: 97342310--97342376 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
97342300 CAGTAAAATA
*
97342310 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
97342344 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
97342377 CTAGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:97349322 original size:3 final size:3
Alignment explanation
Indices: 97349314--97349459 Score: 90
Period size: 3 Copynumber: 49.0 Consensus size: 3
97349304 TATTTTTAAA
*
97349314 TAT TAT TAT TAT TA- TATT TAT TA- TAT TA- TATT TAT T-T TAT TAC
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TA-T TAT TAT TAT TAT
* * * *
97349357 TGT TAC TAT TAT T-T TAT ATATT TAT TAC CAT TATT TATT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT -TA-T TAT TAT TAT TA-T TA-T TAT TAT TAT
* * * * * *
97349405 TAT TAA TAA CA- TAT TGT TTT TAT TAT TAT T-T TAT TAT TAT TAT TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
97349451 TAT TAT TAT
1 TAT TAT TAT
97349460 CATGGTACTA
Statistics
Matches: 113, Mismatches: 18, Indels: 24
0.73 0.12 0.15
Matches are distributed among these distances:
2 13 0.12
3 84 0.74
4 15 0.13
5 1 0.01
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:97349340 original size:14 final size:14
Alignment explanation
Indices: 97349316--97349355 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
97349306 TTTTTAAATA
97349316 TTATTATTATTATAT
1 TTATTA-TATTATAT
97349331 TTATTATATTATAT
1 TTATTATATTATAT
*
97349345 TTATTTTATTA
1 TTATTATATTA
97349356 CTGTTACTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTATTATATTATAT
Found at i:97349409 original size:20 final size:20
Alignment explanation
Indices: 97349314--97349448 Score: 87
Period size: 20 Copynumber: 6.5 Consensus size: 20
97349304 TATTTTTAAA
97349314 TATTATTATTATTATATTTAT
1 TATTATTATTATT-TATTTAT
97349335 TA-TATTA-TATTTATTTTAT
1 TATTATTATTATTTA-TTTAT
* *
97349354 TACTGTTACTATTATTTTATATATT
1 TA---TTATTATTA-TTTATTTA-T
**
97349379 TATTACCATTATTTATTTAT
1 TATTATTATTATTTATTTAT
* * **
97349399 TATTATTATTAATAACATAT
1 TATTATTATTATTTATTTAT
* *
97349419 TGTTTTTATTA-TTATTTTAT
1 TATTATTATTATTTA-TTTAT
97349439 TATTATTATT
1 TATTATTATT
97349449 GTTATTATTA
Statistics
Matches: 88, Mismatches: 17, Indels: 19
0.71 0.14 0.15
Matches are distributed among these distances:
18 2 0.02
19 13 0.15
20 40 0.45
21 9 0.10
22 8 0.09
23 4 0.05
24 5 0.06
25 7 0.08
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (20 bp):
TATTATTATTATTTATTTAT
Found at i:97349436 original size:11 final size:11
Alignment explanation
Indices: 97349422--97349457 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
97349412 AACATATTGT
97349422 TTTTATTATTA
1 TTTTATTATTA
97349433 TTTTATTATTA
1 TTTTATTATTA
*
97349444 TTATTGTTATTA
1 TT-TTATTATTA
97349456 TT
1 TT
97349458 ATCATGGTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (11 bp):
TTTTATTATTA
Found at i:97349613 original size:3 final size:3
Alignment explanation
Indices: 97349605--97349669 Score: 73
Period size: 3 Copynumber: 22.3 Consensus size: 3
97349595 TTTTTCCCTA
* * *
97349605 TAT TAT TAT TTT TAT AAT T-T TCAT T-T TAT TAA TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT
97349648 TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T
97349670 GTCTTCTATT
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
2 6 0.11
3 45 0.85
4 2 0.04
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:97350588 original size:125 final size:125
Alignment explanation
Indices: 97350364--97350593 Score: 318
Period size: 125 Copynumber: 1.8 Consensus size: 125
97350354 GGATTTCTAA
*
97350364 AAAATAAGAAAATATTTCGTGTTTAGAAATTCGAGAAATCATGCCCAATCGTGCTGGGTTTCGAT
1 AAAATAAGAAAATATTTCGTGTTTAGAAATTCGAGAAATCATGCCCAATCGTGCTGGGTTTCGAC
** * ** *
97350429 TTTTCGTTCAACCGAATAACTGAATATCCTTTTGAAATTTTGTCCATGTTTTCTTAAATT
66 TTACCATTCAACCGAATAACCAAATATCCCTTTGAAATTTTGTCCATGTTTTCTTAAATT
* * * *
97350489 AAAATGAGACAATATTTTGTGTTTAGAAATTCGAGAAATCGTGCCCAATCGTGCTGGGTTTCGAC
1 AAAATAAGAAAATATTTCGTGTTTAGAAATTCGAGAAATCATGCCCAATCGTGCTGGGTTTCGAC
** *
97350554 TTACCATTTGACC-AGATAGCCAAATATCCCTTTGAAATTT
66 TTACCATTCAACCGA-ATAACCAAATATCCCTTTGAAATTT
97350594 CAAATGCATG
Statistics
Matches: 90, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
124 1 0.01
125 89 0.99
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36
Consensus pattern (125 bp):
AAAATAAGAAAATATTTCGTGTTTAGAAATTCGAGAAATCATGCCCAATCGTGCTGGGTTTCGAC
TTACCATTCAACCGAATAACCAAATATCCCTTTGAAATTTTGTCCATGTTTTCTTAAATT
Found at i:97353723 original size:53 final size:53
Alignment explanation
Indices: 97353567--97353732 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
97353557 GACGAAAAAT
* **
97353567 ATGTGATAA-GTGCAC-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAATGTG-ACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
97353619 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
97353672 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
97353726 TATGTGA
1 -ATGTGA
97353733 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
52 12 0.12
53 84 0.82
54 1 0.01
55 6 0.06
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:97359903 original size:9 final size:9
Alignment explanation
Indices: 97359881--97359917 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
97359871 TTCGAAAAAA
97359881 AATTCGAGTT
1 AATTCGA-TT
97359891 AATTCGATT
1 AATTCGATT
97359900 AATTCGATT
1 AATTCGATT
*
97359909 AACTCGATT
1 AATTCGATT
97359918 CGAATAATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
9 19 0.73
10 7 0.27
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (9 bp):
AATTCGATT
Found at i:97365069 original size:20 final size:21
Alignment explanation
Indices: 97365017--97365077 Score: 79
Period size: 20 Copynumber: 2.9 Consensus size: 21
97365007 AAGATAGGGG
*
97365017 CACATGCCCGTGTGGCTTGGGA
1 CACATGCCCGTGTGGCCT-GGA
**
97365039 CACGCGCCCGTGTGGCCTGGA
1 CACATGCCCGTGTGGCCTGGA
97365060 -ACATGCCCGTGTGGCCTG
1 CACATGCCCGTGTGGCCTG
97365078 CCCATTTGCA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 16 0.47
21 3 0.09
22 15 0.44
ACGTcount: A:0.11, C:0.33, G:0.36, T:0.20
Consensus pattern (21 bp):
CACATGCCCGTGTGGCCTGGA
Found at i:97372438 original size:20 final size:20
Alignment explanation
Indices: 97372413--97372466 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
97372403 AAGGGCACAT
*
97372413 GCCCGTGTGGCTTGGAACAC
1 GCCCGTGTGGCCTGGAACAC
*
97372433 GCCCGTGTGGCCTGGAACAT
1 GCCCGTGTGGCCTGGAACAC
97372453 GCCCGTGTGGCCTG
1 GCCCGTGTGGCCTG
97372467 CCCATGTGCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.11, C:0.31, G:0.37, T:0.20
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGAACAC
Found at i:97376165 original size:6 final size:6
Alignment explanation
Indices: 97376143--97376220 Score: 113
Period size: 6 Copynumber: 13.0 Consensus size: 6
97376133 AGGTAAAATT
*
97376143 AATAAA AACATAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
1 AATAAA AATA-AA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* *
97376192 AATAAA AATAAA GAT-AA AATAAA ATTAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA
97376221 CATCATTATC
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
5 4 0.06
6 56 0.86
7 5 0.08
ACGTcount: A:0.79, C:0.01, G:0.01, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:97387730 original size:21 final size:21
Alignment explanation
Indices: 97387704--97387743 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
97387694 CCAAATTGAG
97387704 GACCCAATTCACGTGGCAATT
1 GACCCAATTCACGTGGCAATT
*
97387725 GACCCAATTCATGTGGCAA
1 GACCCAATTCACGTGGCAA
97387744 GTGGGAAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (21 bp):
GACCCAATTCACGTGGCAATT
Found at i:97404993 original size:2 final size:2
Alignment explanation
Indices: 97404986--97405019 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
97404976 ACAAACTAAT
97404986 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
97405020 CCCTCCTTCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:97406123 original size:16 final size:17
Alignment explanation
Indices: 97406102--97406150 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
97406092 TATATTTATG
*
97406102 TATTTA-AATTTTATTT
1 TATTTATAATTTAATTT
97406118 TATTTATAATTTAATTT
1 TATTTATAATTTAATTT
*
97406135 AATTT-T--TTTAATTT
1 TATTTATAATTTAATTT
97406149 TA
1 TA
97406151 ATATCATACA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 9 0.31
16 7 0.24
17 13 0.45
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TATTTATAATTTAATTT
Found at i:97410948 original size:39 final size:39
Alignment explanation
Indices: 97410894--97410972 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
97410884 AACCTTACAC
97410894 TCTCATGCCACACAGCACAAAGAATCTTGTCATTTAAGG
1 TCTCATGCCACACAGCACAAAGAATCTTGTCATTTAAGG
97410933 TCTCATGCCACACAGCACAAAGAATCTTGTCATTTAAGG
1 TCTCATGCCACACAGCACAAAGAATCTTGTCATTTAAGG
97410972 T
1 T
97410973 ATGTTTAGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (39 bp):
TCTCATGCCACACAGCACAAAGAATCTTGTCATTTAAGG
Found at i:97411310 original size:131 final size:133
Alignment explanation
Indices: 97411164--97411414 Score: 341
Period size: 131 Copynumber: 1.9 Consensus size: 133
97411154 TAAAATATTT
*
97411164 TATCATTCCTACCAAATCACAACTATGTAAATA-AAAT-TATATT-T-TCTTTCTATATTTCTAC
1 TATCATTCCTACCAAAGCACAACTATGTAAATATAAATATATATTATATCTTTCTATATTT-TAC
* * *
97411225 TCCTAAAATTTTTCATCTTTCCAGTA-ATTTTTCCGCTTTACTAAGCGAAGTATTAGTTATTCAA
65 CCCTAAAA-TTTTCATCTTTCCAATATATTTTTCCGCTTTACCAAGCGAAG-ATTAGTTATTCAA
97411289 TTTTCC
128 TTTTCC
* *
97411295 TATCATTCCTACCAAAGCACAACTATGTAAATATATATATATATTATATCTTTTTATATTTTACC
1 TATCATTCCTACCAAAGCACAACTATGTAAATATAAATATATATTATATCTTTCTATATTTTACC
** * * *
97411360 CCTTCAATTTTCATTTTTCCAATATTTTTTTCCGCTTTACCGAGCGAAGATTAGT
66 CCTAAAATTTTCATCTTTCCAATATATTTTTCCGCTTTACCAAGCGAAGATTAGT
97411415 CAAGAGGTTA
Statistics
Matches: 104, Mismatches: 11, Indels: 8
0.85 0.09 0.07
Matches are distributed among these distances:
131 32 0.31
132 3 0.03
133 27 0.26
134 30 0.29
135 12 0.12
ACGTcount: A:0.30, C:0.20, G:0.06, T:0.44
Consensus pattern (133 bp):
TATCATTCCTACCAAAGCACAACTATGTAAATATAAATATATATTATATCTTTCTATATTTTACC
CCTAAAATTTTCATCTTTCCAATATATTTTTCCGCTTTACCAAGCGAAGATTAGTTATTCAATTT
TCC
Found at i:97411977 original size:20 final size:20
Alignment explanation
Indices: 97411936--97411977 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
97411926 ATGATATAAC
* *
97411936 ATGTGTAATAGTTGATATAT
1 ATGTGTAATAGCTGATAGAT
97411956 ATGTGTAATAGCT-ATAAGAT
1 ATGTGTAATAGCTGAT-AGAT
97411976 AT
1 AT
97411978 TTTATGTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.38, C:0.02, G:0.19, T:0.40
Consensus pattern (20 bp):
ATGTGTAATAGCTGATAGAT
Found at i:97415460 original size:14 final size:14
Alignment explanation
Indices: 97415441--97415467 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97415431 AGAGACATGG
97415441 CAAAAACAAAAAAA
1 CAAAAACAAAAAAA
97415455 CAAAAACAAAAAA
1 CAAAAACAAAAAA
97415468 GAGTTATTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (14 bp):
CAAAAACAAAAAAA
Found at i:97415652 original size:17 final size:17
Alignment explanation
Indices: 97415627--97415662 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
97415617 TGTGTTCAAA
97415627 TTATATTGTATTTAAAT
1 TTATATTGTATTTAAAT
* *
97415644 TTATTTTGTATTTATAT
1 TTATATTGTATTTAAAT
97415661 TT
1 TT
97415663 TTCTAATAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTATATTGTATTTAAAT
Found at i:97418284 original size:27 final size:24
Alignment explanation
Indices: 97418228--97418284 Score: 60
Period size: 27 Copynumber: 2.2 Consensus size: 24
97418218 AAATTACCAT
* *
97418228 TTTTATTTTGAAAAGTTTTTAAAA
1 TTTTATTTTGAAAAATTGTTAAAA
97418252 TGTTTATTTTGAAAAAAATTGTTAAATA
1 T-TTTATTTTG--AAAAATTGTTAAA-A
97418280 TTTTA
1 TTTTA
97418285 AAGTTAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 1 0.04
25 9 0.33
27 15 0.56
28 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.53
Consensus pattern (24 bp):
TTTTATTTTGAAAAATTGTTAAAA
Found at i:97420622 original size:19 final size:20
Alignment explanation
Indices: 97420600--97420638 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
97420590 AAAATGATAA
*
97420600 TTATATTTAATTATT-TTTT
1 TTATAGTTAATTATTCTTTT
*
97420619 TTATAGTTAGTTATTCTTTT
1 TTATAGTTAATTATTCTTTT
97420639 ATAATAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (20 bp):
TTATAGTTAATTATTCTTTT
Found at i:97421094 original size:16 final size:15
Alignment explanation
Indices: 97421068--97421106 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
97421058 TAATGAAAAT
97421068 TAATTTT-TTTGAAA
1 TAATTTTATTTGAAA
97421082 CTAATTTTATTTGAAA
1 -TAATTTTATTTGAAA
*
97421098 TAATATTAT
1 TAATTTTAT
97421107 GTATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 15 0.68
16 7 0.32
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (15 bp):
TAATTTTATTTGAAA
Found at i:97421188 original size:20 final size:20
Alignment explanation
Indices: 97421165--97421203 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
97421155 TAATTATAAA
*
97421165 ATTTATTTATTACATTAATT
1 ATTTATTTATTACAATAATT
97421185 ATTTATTTATTACAATAAT
1 ATTTATTTATTACAATAAT
97421204 AAAACATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (20 bp):
ATTTATTTATTACAATAATT
Found at i:97421610 original size:16 final size:17
Alignment explanation
Indices: 97421589--97421621 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
97421579 CCAATTTGAA
*
97421589 AAAAAGATAAA-AAAAG
1 AAAAAGAAAAAGAAAAG
97421605 AAAAAGAAAAAGAAAAG
1 AAAAAGAAAAAGAAAAG
97421622 GGGGCCTAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (17 bp):
AAAAAGAAAAAGAAAAG
Found at i:97428301 original size:38 final size:38
Alignment explanation
Indices: 97428239--97428312 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
97428229 TTTCTGATGT
97428239 AGAATATTTTTCGGTTAAGAAAAATCCTCTAGCTATTGC
1 AGAATATTTTTCGGTTAAGAAAAATCCTCTA-CTATTGC
* * *
97428278 AGAATA-TTTTCTGTTGAGGAAAATCCTCTACTATT
1 AGAATATTTTTCGGTTAAGAAAAATCCTCTACTATT
97428313 TATGGAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
37 5 0.16
38 21 0.66
39 6 0.19
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (38 bp):
AGAATATTTTTCGGTTAAGAAAAATCCTCTACTATTGC
Found at i:97434734 original size:20 final size:20
Alignment explanation
Indices: 97434695--97434734 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
97434685 TAAGGTGGCC
*
97434695 CGTTAACTAGACACGTTGGA
1 CGTTAACTAGACACGGTGGA
97434715 CGTTAACTAG-CTACGGTGGA
1 CGTTAACTAGAC-ACGGTGGA
97434735 AACTCAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (20 bp):
CGTTAACTAGACACGGTGGA
Found at i:97435515 original size:29 final size:29
Alignment explanation
Indices: 97435473--97435528 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
97435463 CAACAAAGTT
97435473 TTAGACATAGCAATTTAACCATGACATTA
1 TTAGACATAGCAATTTAACCATGACATTA
97435502 TTAGACATAGCAATTTAACCATGACAT
1 TTAGACATAGCAATTTAACCATGACAT
97435529 AAGAATCGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (29 bp):
TTAGACATAGCAATTTAACCATGACATTA
Found at i:97436333 original size:23 final size:24
Alignment explanation
Indices: 97436306--97436364 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 24
97436296 TTCGCATGTT
* *
97436306 CACATATATAGGATTTGCGTA-ATA
1 CACATATATAGG-TTTGCATATACA
*
97436330 -ACATGTATAAGGTTTGCATATACA
1 CACATATAT-AGGTTTGCATATACA
97436354 CACATATATAG
1 CACATATATAG
97436365 AGAGAGTTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
23 14 0.50
24 7 0.25
25 7 0.25
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (24 bp):
CACATATATAGGTTTGCATATACA
Found at i:97450364 original size:28 final size:28
Alignment explanation
Indices: 97450317--97450386 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
97450307 CACAACCATG
*
97450317 TGTCCCCTTTTATTTAGATTTTATAGTTT
1 TGTCCCCTTTT-TTTAGATTTTACAGTTT
*
97450346 TG-CCCCTATTTTTTGGATTTTACAGTTT
1 TGTCCCCT-TTTTTTAGATTTTACAGTTT
*
97450374 TGTCCCCTGTTTT
1 TGTCCCCTTTTTT
97450387 ACAAATTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 26 0.72
29 10 0.28
ACGTcount: A:0.13, C:0.19, G:0.13, T:0.56
Consensus pattern (28 bp):
TGTCCCCTTTTTTTAGATTTTACAGTTT
Found at i:97450707 original size:34 final size:34
Alignment explanation
Indices: 97450659--97450761 Score: 107
Period size: 34 Copynumber: 3.0 Consensus size: 34
97450649 AGCATGGCTT
* * **
97450659 TTGCCACTAAATTGAACAGTTATAAGCATATTAA
1 TTGCTACTATATTGAACTATTATAAGCATATTAA
**
97450693 TTGCTACTATATTGAACTATTATAAGCATATTGG
1 TTGCTACTATATTGAACTATTATAAGCATATTAA
* ** *
97450727 TTGCTACTGTATTGTTCTATTAAAAGCATAATTAA
1 TTGCTACTATATTGAACTATTATAAGCAT-ATTAA
97450762 ATACTATCGT
Statistics
Matches: 56, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
34 53 0.95
35 3 0.05
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.39
Consensus pattern (34 bp):
TTGCTACTATATTGAACTATTATAAGCATATTAA
Found at i:97451489 original size:25 final size:25
Alignment explanation
Indices: 97451461--97451529 Score: 75
Period size: 27 Copynumber: 2.7 Consensus size: 25
97451451 TATATTGTTT
*
97451461 TATTTATTTTGTGGCATGAAACTCA
1 TATTTATTTTGTGGCATAAAACTCA
* * * *
97451486 TATTTAAGGTTTATAGCTTAAAACTCA
1 TATTT-A-TTTTGTGGCATAAAACTCA
97451513 TATTTATTTTGTGGCAT
1 TATTTATTTTGTGGCAT
97451530 TAGTTTTCTT
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
25 12 0.36
26 2 0.06
27 19 0.58
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.46
Consensus pattern (25 bp):
TATTTATTTTGTGGCATAAAACTCA
Found at i:97452462 original size:35 final size:33
Alignment explanation
Indices: 97452393--97452471 Score: 90
Period size: 35 Copynumber: 2.3 Consensus size: 33
97452383 AAAAATATTA
97452393 TTTATTATATTATTAATTTGACATTTAAATAAT
1 TTTATTATATTATTAATTTGACATTTAAATAAT
*
97452426 TTTATTTTATTATTAAATTTTGA-ATATTGAAA-AAT
1 TTTATTATATTATT-AA-TTTGACAT-TT-AAATAAT
*
97452461 TTCATTATATT
1 TTTATTATATT
97452472 TAAGTTTAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
33 13 0.33
34 4 0.10
35 19 0.49
36 3 0.08
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.56
Consensus pattern (33 bp):
TTTATTATATTATTAATTTGACATTTAAATAAT
Found at i:97455057 original size:22 final size:22
Alignment explanation
Indices: 97455032--97455078 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
97455022 AATGCCTACT
97455032 TTCGTTGATTCAACACAATTCC
1 TTCGTTGATTCAACACAATTCC
97455054 TTCGTTGATTCAACACAATTCC
1 TTCGTTGATTCAACACAATTCC
97455076 TTC
1 TTC
97455079 ATGTGATCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.38
Consensus pattern (22 bp):
TTCGTTGATTCAACACAATTCC
Found at i:97457624 original size:15 final size:14
Alignment explanation
Indices: 97457606--97457636 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
97457596 TTAATTTATT
97457606 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
97457621 TAATAATAATCTAA
1 TAATAATAATCTAA
97457635 TA
1 TA
97457637 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:97457647 original size:21 final size:20
Alignment explanation
Indices: 97457623--97457691 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
97457613 AATGCTAATA
97457623 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
97457644 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
97457663 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
97457684 ATAATAAT
1 ATAATAAT
97457692 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:97457703 original size:33 final size:32
Alignment explanation
Indices: 97457655--97457732 Score: 78
Period size: 30 Copynumber: 2.6 Consensus size: 32
97457645 TAATGTTAAT
* *
97457655 TAATAATTATAATAATTTAATATAAAACC-ATAA
1 TAATAATCATTATAATTT-ATATAAAACCTA-AA
97457688 TAATAATCATTATAA--TATATAAAACCTAAA
1 TAATAATCATTATAATTTATATAAAACCTAAA
97457718 TAA-AATC-TT-TAATTT
1 TAATAATCATTATAATTT
97457733 TATTTCACCA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
27 3 0.08
28 2 0.05
29 5 0.12
30 15 0.38
31 2 0.05
33 13 0.32
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (32 bp):
TAATAATCATTATAATTTATATAAAACCTAAA
Found at i:97461039 original size:25 final size:25
Alignment explanation
Indices: 97461011--97461101 Score: 155
Period size: 25 Copynumber: 3.6 Consensus size: 25
97461001 CGAAATGACT
97461011 TGGCACTAAGTGTGCGGAAATTATA
1 TGGCACTAAGTGTGCGGAAATTATA
*
97461036 TGGCACTAAGTGTGCGGAAATTGTA
1 TGGCACTAAGTGTGCGGAAATTATA
*
97461061 TGGCACTAAGTGTGCGGAAATTTTA
1 TGGCACTAAGTGTGCGGAAATTATA
*
97461086 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
97461102 AATATATATA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.30
Consensus pattern (25 bp):
TGGCACTAAGTGTGCGGAAATTATA
Done.