Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 299 of 325
Found at i:97468437 original size:25 final size:25
Alignment explanation
Indices: 97468409--97468499 Score: 155
Period size: 25 Copynumber: 3.6 Consensus size: 25
97468399 CGAAATGACT
*
97468409 TGGCACTAAGTGTGCGGAAATTATA
1 TGGCACTAAGTGTGCGGAAATTGTA
*
97468434 TGGCACTAAGTGTGCGAAAATTGTA
1 TGGCACTAAGTGTGCGGAAATTGTA
97468459 TGGCACTAAGTGTGCGGAAATTGTA
1 TGGCACTAAGTGTGCGGAAATTGTA
*
97468484 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
97468500 AATATATATG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.27, C:0.13, G:0.31, T:0.29
Consensus pattern (25 bp):
TGGCACTAAGTGTGCGGAAATTGTA
Found at i:97471812 original size:18 final size:19
Alignment explanation
Indices: 97471775--97471815 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
97471765 ATTTAGAATC
97471775 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAATAATA
* *
97471794 AAAACTAGATTAAAT-ATA
1 AAAACTAAAATAAATAATA
97471812 AAAA
1 AAAA
97471816 TATCAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (19 bp):
AAAACTAAAATAAATAATA
Found at i:97471817 original size:31 final size:31
Alignment explanation
Indices: 97471741--97471814 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
97471731 TCAAGTTATC
*
97471741 TTAAATATTAAAATAAAAATAAAAATTTAGAA
1 TTAAATA-TAAAATAAAAATAAAAATCTAGAA
*
97471773 TCAAA-ACTAAAATAAATAATAAAAA-CTAG-A
1 TTAAATA-TAAAATAAA-AATAAAAATCTAGAA
97471803 TTAAATATAAAA
1 TTAAATATAAAA
97471815 ATATCAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
30 10 0.28
31 14 0.39
32 12 0.33
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.27
Consensus pattern (31 bp):
TTAAATATAAAATAAAAATAAAAATCTAGAA
Found at i:97477102 original size:41 final size:41
Alignment explanation
Indices: 97477054--97477131 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
97477044 TTTTTTTAAC
* *
97477054 GGCGTTTTCAC-TAAAAACGCCATTATAGCTTAATTTTTTGT
1 GGCGTTTT-ACTTAAAAACGCCACTATAGATTAATTTTTTGT
*
97477095 GGCGTTTTACTTAAAAACGCCACTATTGATTAATTTT
1 GGCGTTTTACTTAAAAACGCCACTATAGATTAATTTT
97477132 AATTTTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 2 0.06
41 31 0.94
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (41 bp):
GGCGTTTTACTTAAAAACGCCACTATAGATTAATTTTTTGT
Found at i:97477239 original size:22 final size:21
Alignment explanation
Indices: 97477214--97477254 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
97477204 TTTGGAATTT
*
97477214 TTTTTAATTTTAAATATTGAAC
1 TTTTTAA-TTAAAATATTGAAC
97477236 TTTTTAATTAAAATATTGA
1 TTTTTAATTAAAATATTGA
97477255 TTAAAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (21 bp):
TTTTTAATTAAAATATTGAAC
Found at i:97477274 original size:8 final size:8
Alignment explanation
Indices: 97477263--97477333 Score: 78
Period size: 8 Copynumber: 9.4 Consensus size: 8
97477253 GATTAAAATA
97477263 TTAAATTT
1 TTAAATTT
97477271 TT-AATTT
1 TTAAATTT
*
97477278 TTAATTTT
1 TTAAATTT
*
97477286 TTTAA-TT
1 TTAAATTT
97477293 TT-AATTT
1 TTAAATTT
*
97477300 TT-TATTT
1 TTAAATTT
97477307 TTAAATTT
1 TTAAATTT
97477315 TTAAATTT
1 TTAAATTT
*
97477323 TTAATTTT
1 TTAAATTT
97477331 TTA
1 TTA
97477334 TTTTTTGAGT
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
6 2 0.04
7 21 0.39
8 31 0.57
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (8 bp):
TTAAATTT
Found at i:97477314 original size:30 final size:29
Alignment explanation
Indices: 97477266--97477338 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
97477256 TAAAATATTA
* *
97477266 AATTTTTAATTTTTAATTTTTTTAA-TTTT
1 AATTTTTTATTTTTAA-TTTTTAAATTTTT
97477295 AATTTTTTATTTTTAAATTTTTAAATTTTT
1 AATTTTTTATTTTT-AATTTTTAAATTTTT
97477325 AATTTTTTATTTTT
1 AATTTTTTATTTTT
97477339 TGAGTTTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
29 20 0.50
30 20 0.50
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (29 bp):
AATTTTTTATTTTTAATTTTTAAATTTTT
Found at i:97477356 original size:7 final size:7
Alignment explanation
Indices: 97477266--97477338 Score: 85
Period size: 7 Copynumber: 10.0 Consensus size: 7
97477256 TAAAATATTA
97477266 AATTTTT
1 AATTTTT
97477273 AATTTTT
1 AATTTTT
97477280 AATTTTTTT
1 AA--TTTTT
97477289 AA-TTTT
1 AATTTTT
97477295 AATTTTT
1 AATTTTT
*
97477302 TATTTTT
1 AATTTTT
97477309 AAATTTTT
1 -AATTTTT
97477317 AAATTTTT
1 -AATTTTT
97477325 AATTTTT
1 AATTTTT
*
97477332 TATTTTT
1 AATTTTT
97477339 TGAGTTTATT
Statistics
Matches: 59, Mismatches: 3, Indels: 8
0.84 0.04 0.11
Matches are distributed among these distances:
6 6 0.10
7 32 0.54
8 14 0.24
9 7 0.12
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
AATTTTT
Found at i:97477870 original size:15 final size:15
Alignment explanation
Indices: 97477847--97477897 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
97477837 ATACCCATGG
*
97477847 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
97477862 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
* *
97477877 CTAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
97477891 CCTTAAA
1 CCATAAA
97477898 TATTAAATCG
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:97478076 original size:37 final size:37
Alignment explanation
Indices: 97478020--97478092 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
97478010 ATGTGATGTT
97478020 TTTTGGGGTTTAAGGTTTTAGAAGTTATAGTTTAGTA
1 TTTTGGGGTTTAAGGTTTTAGAAGTTATAGTTTAGTA
*
97478057 TTTTGGGGTTT-AGGTTTTTAGAGGTTATAGTTTAGT
1 TTTTGGGGTTTAAGG-TTTTAGAAGTTATAGTTTAGT
97478093 GTTAATGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 3 0.09
37 31 0.91
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.51
Consensus pattern (37 bp):
TTTTGGGGTTTAAGGTTTTAGAAGTTATAGTTTAGTA
Found at i:97478191 original size:41 final size:41
Alignment explanation
Indices: 97478134--97478314 Score: 276
Period size: 41 Copynumber: 4.4 Consensus size: 41
97478124 GGAGTAATAT
97478134 GACTTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCC
1 GACTTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCC
*
97478175 GACTTTTAGCGGCGTTTTATTGAAAGCGCCGCTAATGCTCC
1 GACTTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCC
*
97478216 GACTTTTAGCGGTGTTTTATCGAAAGCGCCGCTAATGCTCC
1 GACTTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCC
* * * * *
97478257 GACTTTTAACGGCGTTTTACCAAAAGCGCCGCTATTGCTCT
1 GACTTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCC
97478298 G--TTATTAGCGGCGTTTT
1 GACTT-TTAGCGGCGTTTT
97478315 TGGTGAAACG
Statistics
Matches: 129, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.02
40 12 0.09
41 115 0.89
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (41 bp):
GACTTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCC
Found at i:97478384 original size:12 final size:12
Alignment explanation
Indices: 97478369--97478395 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
97478359 GTTTTTTGAT
97478369 AAAACGCCGCTA
1 AAAACGCCGCTA
97478381 AAAACGCCGCTA
1 AAAACGCCGCTA
97478393 AAA
1 AAA
97478396 CCCTATTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.30, G:0.15, T:0.07
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:97483282 original size:5 final size:5
Alignment explanation
Indices: 97483274--97483308 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
97483264 TTACTATACT
97483274 AGTGA AGTGA AGTGA AGTGA AGTGA AGTGA AGTGA
1 AGTGA AGTGA AGTGA AGTGA AGTGA AGTGA AGTGA
97483309 TGTCAGCTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (5 bp):
AGTGA
Found at i:97491373 original size:13 final size:13
Alignment explanation
Indices: 97491351--97491390 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
97491341 TATTTTATAA
*
97491351 AAAATCTTTTTTT
1 AAAATTTTTTTTT
*
97491364 GAAATTTTTTTTT
1 AAAATTTTTTTTT
97491377 AAAATTTTATTTTT
1 AAAATTTT-TTTTT
97491391 TTGCTGAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
13 18 0.78
14 5 0.22
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (13 bp):
AAAATTTTTTTTT
Found at i:97494112 original size:21 final size:21
Alignment explanation
Indices: 97494066--97494113 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
97494056 TATAACTAAA
*
97494066 AATTGTTATCATAATGTTTTT
1 AATTATTATCATAATGTTTTT
*
97494087 -CTTATTATCAATAAT-TTTTT
1 AATTATTATC-ATAATGTTTTT
97494107 AATTATT
1 AATTATT
97494114 TATTTGATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (21 bp):
AATTATTATCATAATGTTTTT
Found at i:97497335 original size:3 final size:3
Alignment explanation
Indices: 97497329--97497362 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
97497319 TCCTCCTCCG
* *
97497329 TCA TCA TCG TCA TCG TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
97497363 ACACGTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.26, C:0.32, G:0.06, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:97501435 original size:43 final size:43
Alignment explanation
Indices: 97501369--97501453 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
97501359 TCACTGCCAA
*
97501369 AAGCCAAACATTATTACACTATTATTACTAACTCAATGTAGGG
1 AAGCCAAACATTATTACACTATTATTACTAACTCAACGTAGGG
* * *
97501412 AAGCTAAACATTATTACATTATTATTACTAACTGAACGTAGG
1 AAGCCAAACATTATTACACTATTATTACTAACTCAACGTAGG
97501454 AAAACAAGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (43 bp):
AAGCCAAACATTATTACACTATTATTACTAACTCAACGTAGGG
Found at i:97502653 original size:27 final size:26
Alignment explanation
Indices: 97502616--97502667 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
97502606 AGTAAGACAA
** *
97502616 AAAAATTAAATTGATTTTATTTTATT
1 AAAAATTAAATAAATTATATTTTATT
97502642 AAAAATTAAAATAAATTATATTTTAT
1 AAAAATT-AAATAAATTATATTTTAT
97502668 CCAAAAGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (26 bp):
AAAAATTAAATAAATTATATTTTATT
Found at i:97504138 original size:16 final size:16
Alignment explanation
Indices: 97504107--97504143 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
97504097 ATATGAAGAA
97504107 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
97504123 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
97504139 TATTA
1 TATTA
97504144 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:97504178 original size:13 final size:13
Alignment explanation
Indices: 97504158--97504187 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
97504148 AAAATTGAAA
97504158 TATT-AAATAATT
1 TATTAAAATAATT
97504170 TATTAAAATAATT
1 TATTAAAATAATT
97504183 TATTA
1 TATTA
97504188 TATGATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TATTAAAATAATT
Found at i:97504222 original size:22 final size:23
Alignment explanation
Indices: 97504197--97504242 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
97504187 ATATGATTAA
97504197 ATATTTAAAATTAT-AATATTTT
1 ATATTTAAAATTATAAATATTTT
* *
97504219 ATATTTATAATTTTAAATATTTT
1 ATATTTAAAATTATAAATATTTT
97504242 A
1 A
97504243 AAAATAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
ATATTTAAAATTATAAATATTTT
Found at i:97505270 original size:21 final size:21
Alignment explanation
Indices: 97505241--97505288 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
97505231 ATTTATACAT
* * *
97505241 ATAAATAAAAAACATAAAAAA
1 ATAATTAAAAAAAAGAAAAAA
97505262 ATAATTAAAAAAAAGAAAAAA
1 ATAATTAAAAAAAAGAAAAAA
97505283 A-AATTA
1 ATAATTA
97505289 CCCCAAAGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (21 bp):
ATAATTAAAAAAAAGAAAAAA
Found at i:97506737 original size:22 final size:20
Alignment explanation
Indices: 97506679--97506746 Score: 52
Period size: 22 Copynumber: 3.5 Consensus size: 20
97506669 TTGCTTTCAT
*
97506679 CATTATTATTAT-TACTA-A
1 CATTTTTATTATATACTATA
* *
97506697 CATGTATA-TATATACTATA
1 CATTTTTATTATATACTATA
*
97506716 TATTTTTATTATATCACGTATA
1 CATTTTTATTATAT-AC-TATA
*
97506738 CGTTTTTAT
1 CATTTTTAT
97506747 ATGTACGCTA
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
17 3 0.08
18 10 0.27
19 6 0.16
20 5 0.14
21 2 0.05
22 11 0.30
ACGTcount: A:0.34, C:0.10, G:0.04, T:0.51
Consensus pattern (20 bp):
CATTTTTATTATATACTATA
Found at i:97518433 original size:43 final size:44
Alignment explanation
Indices: 97518372--97518456 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 44
97518362 ATAATAAATT
*
97518372 TTAACCCCCTAAGCAGTAGGGTAACAAGCT-AAATTTACAGACC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAAATTACAGACC
* * *
97518415 TTAACCCCCTAAGTAGTAGGGTAATAGGCTGAAAATTACAGA
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAAATTACAGA
97518457 TTTTGTCTCC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 27 0.73
44 10 0.27
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (44 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAAATTACAGACC
Found at i:97519755 original size:10 final size:9
Alignment explanation
Indices: 97519729--97519754 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
97519719 TAAAAAACAT
97519729 AAAAAAAAG
1 AAAAAAAAG
97519738 AAAAAAAAG
1 AAAAAAAAG
97519747 AAAAAAAA
1 AAAAAAAA
97519755 ATTACCCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:97522738 original size:14 final size:14
Alignment explanation
Indices: 97522727--97522761 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 14
97522717 TTTAAAATTA
97522727 ATAAATATAAATAT
1 ATAAATATAAATAT
97522741 ATAAATATATAAATAT
1 AT-AA-ATATAAATAT
97522757 ATAAA
1 ATAAA
97522762 ACCCAACAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 3 0.16
15 4 0.21
16 12 0.63
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAAATATAAATAT
Found at i:97522742 original size:8 final size:8
Alignment explanation
Indices: 97522731--97522761 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
97522721 AAATTAATAA
97522731 ATATAAAT
1 ATATAAAT
97522739 ATATAAAT
1 ATATAAAT
97522747 ATATAAAT
1 ATATAAAT
97522755 ATATAAA
1 ATATAAA
97522762 ACCCAACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (8 bp):
ATATAAAT
Found at i:97527334 original size:3 final size:3
Alignment explanation
Indices: 97527326--97527350 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
97527316 TTTTAAGCAC
97527326 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
97527351 CGACCCTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:97530106 original size:3 final size:3
Alignment explanation
Indices: 97530098--97530132 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
97530088 TGGTTATGGA
97530098 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
97530133 AAAATAAATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:97532485 original size:15 final size:14
Alignment explanation
Indices: 97532458--97532488 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
97532448 TTTGATCAAG
97532458 TAAAATTAAATTAA
1 TAAAATTAAATTAA
97532472 TAAAATTAAAATTAA
1 TAAAATT-AAATTAA
97532487 TA
1 TA
97532489 TGATATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
TAAAATTAAATTAA
Found at i:97532939 original size:37 final size:36
Alignment explanation
Indices: 97532876--97532982 Score: 94
Period size: 37 Copynumber: 2.9 Consensus size: 36
97532866 ATTCTAAAAA
*
97532876 TAATATTATTTTAATAGTTTAATATTAAATTAAATT
1 TAATATTATCTTAATAGTTTAATATTAAATTAAATT
* *
97532912 TAATACTTATCTTAATAGTATT-TTATTAATTTAATATT
1 TAATA-TTATCTTAATAGT-TTAATATTAAATTAA-ATT
* * *
97532950 AAATTGATTATCTTAAT-GTTAAAT-TTAATTTAA
1 TAA-T-ATTATCTTAATAGTTTAATATTAAATTAA
97532983 TGTTACATTC
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
36 5 0.08
37 32 0.54
38 10 0.17
39 11 0.19
40 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (36 bp):
TAATATTATCTTAATAGTTTAATATTAAATTAAATT
Found at i:97532951 original size:11 final size:11
Alignment explanation
Indices: 97532876--97533064 Score: 58
Period size: 11 Copynumber: 16.8 Consensus size: 11
97532866 ATTCTAAAAA
*
97532876 TAATATTATTT
1 TAATATTAATT
97532887 TAATAGTTTAATAT
1 TAATA--TTAAT-T
97532901 TAA-ATTAAATT
1 TAATATT-AATT
97532912 TAATACTT-ATCT
1 TAATA-TTAAT-T
*
97532924 TAATAGT-ATT
1 TAATATTAATT
97532934 T--TATTAATT
1 TAATATTAATT
97532943 TAATATTAAATT
1 TAATATT-AATT
* *
97532955 GATTATCTTAATGT
1 --TAATATTAAT-T
97532969 TAA-ATTTAATT
1 TAATA-TTAATT
*
97532980 TAATGTTACA-T
1 TAATATTA-ATT
* *
97532991 T-CTATTATTT
1 TAATATTAATT
*
97533001 TAATA-AAATT
1 TAATATTAATT
97533011 TAATATTAAATT
1 TAATATT-AATT
*
97533023 TAAT-CTAATAT
1 TAATATTAAT-T
* * *
97533034 CAAGATAAATAT
1 TAATATTAAT-T
97533046 T-ATATTAATT
1 TAATATTAATT
97533056 TAATATTAA
1 TAATATTAA
97533065 AGTAATTAAG
Statistics
Matches: 131, Mismatches: 23, Indels: 48
0.65 0.11 0.24
Matches are distributed among these distances:
8 3 0.02
9 4 0.03
10 21 0.16
11 48 0.37
12 35 0.27
13 10 0.08
14 10 0.08
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.50
Consensus pattern (11 bp):
TAATATTAATT
Found at i:97535456 original size:53 final size:53
Alignment explanation
Indices: 97535375--97535525 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
97535365 CTTACACGGT
* *
97535375 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
97535430 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACTGAATCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
97535483 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
97535526 GCGCACTTAT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:97536672 original size:26 final size:26
Alignment explanation
Indices: 97536634--97536685 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
97536624 AGTGTTTGGA
97536634 ATTTTGCAATATGATTTATT-GATAAT
1 ATTTTGCAATATGATTT-TTAGATAAT
* *
97536660 ATTTTGTACTATGATTTTTAGATAAT
1 ATTTTGCAATATGATTTTTAGATAAT
97536686 TAAATCAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.33, C:0.04, G:0.12, T:0.52
Consensus pattern (26 bp):
ATTTTGCAATATGATTTTTAGATAAT
Found at i:97538262 original size:39 final size:39
Alignment explanation
Indices: 97538204--97538325 Score: 165
Period size: 39 Copynumber: 3.1 Consensus size: 39
97538194 TTTTGAGTAT
* * * *
97538204 TGTGATATAT-TCTTGAATGTTATGTGATTAAATATGTAT
1 TGTGATATATGT-TTAAATGTTATGTGATTATATGTGTAC
*
97538243 TGTGATATATGTTTAAATGTTATGTGATTGTATGTGTAC
1 TGTGATATATGTTTAAATGTTATGTGATTATATGTGTAC
* *
97538282 TGTGATATATGCTTAAATGTTACGTGATTATATGTGTAC
1 TGTGATATATGTTTAAATGTTATGTGATTATATGTGTAC
97538321 TGTGA
1 TGTGA
97538326 CAGCCCTAAT
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 73 0.99
40 1 0.01
ACGTcount: A:0.28, C:0.04, G:0.21, T:0.47
Consensus pattern (39 bp):
TGTGATATATGTTTAAATGTTATGTGATTATATGTGTAC
Found at i:97541210 original size:43 final size:43
Alignment explanation
Indices: 97540934--97541197 Score: 456
Period size: 43 Copynumber: 6.1 Consensus size: 43
97540924 GTTAAATCCC
* *
97540934 GCAGGCTTCGTACCGGTGATGTATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
97540977 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCTTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
97541020 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
97541063 GCAGGCTTCGTGTCGGTGATGTATATTCTGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
97541106 GCAGGCTTCGTGCCGGTGATGTGTATTCGAGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
97541149 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
97541192 GCAGGC
1 GCAGGC
97541198 GTAATGCCGG
Statistics
Matches: 207, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 207 1.00
ACGTcount: A:0.11, C:0.25, G:0.33, T:0.31
Consensus pattern (43 bp):
GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:97545172 original size:28 final size:27
Alignment explanation
Indices: 97545108--97545172 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
97545098 ACACAAATTG
* * *
97545108 AAAATATAATAAAAAGTGATTATATTA
1 AAAATAAAATAAAAAGTAAATATATTA
* *
97545135 AAATTGAAAATAAAATGTAAATATGATTA
1 AAAAT-AAAATAAAAAGTAAATAT-ATTA
97545164 AAAATAAAA
1 AAAATAAAA
97545173 ATATATATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
27 4 0.13
28 18 0.60
29 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATAAAATAAAAAGTAAATATATTA
Found at i:97546256 original size:25 final size:26
Alignment explanation
Indices: 97546184--97546269 Score: 102
Period size: 25 Copynumber: 3.2 Consensus size: 26
97546174 TGATTTTTTG
*
97546184 TTCTTGAATCTCAAAAAAAAAGAAAAGTCCC
1 TTCTTGAATCTC---AAAAAA-AAAA-TCTC
*
97546215 CTCTTGAATCTCAAAAAAAAAATCTC
1 TTCTTGAATCTCAAAAAAAAAATCTC
97546241 TTCTTGAATCTC-AAAAAAAAATCTC
1 TTCTTGAATCTCAAAAAAAAAATCTC
97546266 TTCT
1 TTCT
97546270 CTCCAAAATA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
25 17 0.33
26 14 0.27
27 4 0.08
28 6 0.12
31 11 0.21
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (26 bp):
TTCTTGAATCTCAAAAAAAAAATCTC
Found at i:97548141 original size:19 final size:18
Alignment explanation
Indices: 97548117--97548152 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
97548107 CTTGAAGGCT
97548117 TTTTTTTAAGTAATTCATA
1 TTTTTTTAA-TAATTCATA
97548136 TTTTTTTAATAATTCAT
1 TTTTTTTAATAATTCAT
97548153 TTTAAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.61
Consensus pattern (18 bp):
TTTTTTTAATAATTCATA
Found at i:97551317 original size:15 final size:15
Alignment explanation
Indices: 97551297--97551326 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
97551287 TTTGGCTTGC
97551297 ATGCAAGTATTATTT
1 ATGCAAGTATTATTT
*
97551312 ATGCAATTATTATTT
1 ATGCAAGTATTATTT
97551327 TTTAATGATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (15 bp):
ATGCAAGTATTATTT
Found at i:97555132 original size:42 final size:42
Alignment explanation
Indices: 97555068--97555153 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
97555058 TGTTATTATT
97555068 TTTATCATTTCAGTCAAAATGTGCTGCTAAACTCTAGCATAC
1 TTTATCATTTCAGTCAAAATGTGCTGCTAAACTCTAGCATAC
*
97555110 TTTATCATTTCAGTCAACATGTGCTGCTAAACTCTAGCATAC
1 TTTATCATTTCAGTCAAAATGTGCTGCTAAACTCTAGCATAC
97555152 TT
1 TT
97555154 CGGTTGAATC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (42 bp):
TTTATCATTTCAGTCAAAATGTGCTGCTAAACTCTAGCATAC
Found at i:97570203 original size:21 final size:21
Alignment explanation
Indices: 97570161--97570205 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
97570151 TTTTTTTAAT
*
97570161 ATTTTTAACAATTGAAATTAA
1 ATTTTTAACAATTGAAAATAA
*
97570182 ATTTTTAA-ATTTGAAGAATAA
1 ATTTTTAACAATTGAA-AATAA
97570203 ATT
1 ATT
97570206 ATGACATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (21 bp):
ATTTTTAACAATTGAAAATAA
Found at i:97570962 original size:53 final size:52
Alignment explanation
Indices: 97570711--97570969 Score: 178
Period size: 53 Copynumber: 4.8 Consensus size: 52
97570701 ACCATTTAAA
** * * *
97570711 ATTTATAATAAAAATTTAGGTGCTGTGACATTGATGACCTGCACCCTTGTACTAG
1 ATTTA-AA-AAAAATTTAGGTGCTGAAACACTGATGGCCTGCA-CCTTGTACCAG
* ** * ** * *
97570766 ATTAAAAAAAAATTGGGGTGCTGATACACTGATGATCGGCACCTTAGTACCAA
1 ATTTAAAAAAAATTTAGGTGCTGAAACACTGATGGCCTGCACCTT-GTACCAG
* * *
97570819 ATTTTAAAAAAAAAATTAAGTGCTGAAATACTGATGG-CTGACACCGTTGTACCAG
1 A-TTT-AAAAAAAATTTAGGTGCTGAAACACTGATGGCCTG-CACC-TTGTACCAG
* * * *** * * *
97570874 ATTTAAAAAAATTTTAGTTGTTGGGGCACTAATGGCCAGCACTCTTGTACGAG
1 ATTTAAAAAAAATTTAGGTGCTGAAACACTGATGGCCTGCAC-CTTGTACCAG
* * *
97570927 ATTTAAAAAAATTTTAGGTGCTGAAACATTGATGGCTTGCACC
1 ATTTAAAAAAAATTTAGGTGCTGAAACACTGATGGCCTGCACC
97570970 CCAATGTTAG
Statistics
Matches: 156, Mismatches: 41, Indels: 17
0.73 0.19 0.08
Matches are distributed among these distances:
52 5 0.03
53 98 0.63
54 12 0.08
55 39 0.25
56 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (52 bp):
ATTTAAAAAAAATTTAGGTGCTGAAACACTGATGGCCTGCACCTTGTACCAG
Found at i:97571513 original size:50 final size:50
Alignment explanation
Indices: 97571423--97571518 Score: 124
Period size: 50 Copynumber: 1.9 Consensus size: 50
97571413 CAGTACCCAA
* **
97571423 ACTTTTTTTTTTAAATTTGCTATAAGGGTGTTGGTCATTAGTGTCCTAAC
1 ACTTTTTTTTTTAAATCTGCTATAAGGGTGCCGGTCATTAGTGTCCTAAC
*
97571473 ACTTTTTTTTTTAAATCTGGTACT-AGGGTGCCGG-CAATTAGTGTCC
1 ACTTTTTTTTTTAAATCTGCTA-TAAGGGTGCCGGTC-ATTAGTGTCC
97571519 CATCACCCCA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
49 1 0.03
50 38 0.95
51 1 0.03
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.45
Consensus pattern (50 bp):
ACTTTTTTTTTTAAATCTGCTATAAGGGTGCCGGTCATTAGTGTCCTAAC
Found at i:97580775 original size:18 final size:17
Alignment explanation
Indices: 97580748--97580796 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 17
97580738 AACGAAAATT
*
97580748 TATTTGATAATAAGATAA
1 TATTTTATAATAA-ATAA
*
97580766 TATTTTATAATAAATAG
1 TATTTTATAATAAATAA
*
97580783 TATGTTAT-ATAAAT
1 TATTTTATAATAAAT
97580797 TTAATAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 6 0.21
17 10 0.36
18 12 0.43
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (17 bp):
TATTTTATAATAAATAA
Found at i:97580940 original size:23 final size:23
Alignment explanation
Indices: 97580913--97580967 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
97580903 TGATTTAAAC
*
97580913 AAATATTTATATTTATATTATTA
1 AAATATTTATATTTATATTATAA
*
97580936 AAATATTAATATTTATATTATAA
1 AAATATTTATATTTATATTATAA
*
97580959 AAATGTTTA
1 AAATATTTA
97580968 ATATGAATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (23 bp):
AAATATTTATATTTATATTATAA
Found at i:97580977 original size:24 final size:23
Alignment explanation
Indices: 97580913--97580977 Score: 58
Period size: 23 Copynumber: 2.8 Consensus size: 23
97580903 TGATTTAAAC
* ** *
97580913 AAATATTTATATTTATATTATTA
1 AAATATTAATATGAATATTATAA
**
97580936 AAATATTAATATTTATATTATAA
1 AAATATTAATATGAATATTATAA
*
97580959 AAATGTTTAATATGAATAT
1 AAAT-ATTAATATGAATAT
97580978 ATACGTTTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
23 25 0.69
24 11 0.31
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (23 bp):
AAATATTAATATGAATATTATAA
Found at i:97584004 original size:15 final size:16
Alignment explanation
Indices: 97583984--97584017 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
97583974 AATATTTTAA
97583984 AAATTATAAAAAT-AT
1 AAATTATAAAAATAAT
*
97583999 AAATTATTAAAATAAT
1 AAATTATAAAAATAAT
97584015 AAA
1 AAA
97584018 ATTGTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AAATTATAAAAATAAT
Found at i:97586704 original size:9 final size:9
Alignment explanation
Indices: 97586690--97586726 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
97586680 TATAGTTTGA
97586690 TATTCGAAT
1 TATTCGAAT
97586699 TATTCGAAT
1 TATTCGAAT
*
97586708 TATTCGAGT
1 TATTCGAAT
97586717 TATTCGAAT
1 TATTCGAAT
97586726 T
1 T
97586727 CAAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:97589293 original size:25 final size:25
Alignment explanation
Indices: 97589202--97589283 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 25
97589192 GTGGACACAC
* *
97589202 CACACCTCGTATAAGCTTACCGATT
1 CACAGCTCGTATGAGCTTACCGATT
** *
97589227 TGCAGCTCATGA-GAGCTTACCGATT
1 CACAGCTCGT-ATGAGCTTACCGATT
*
97589252 CTCAGCTCGTATGAGCTTACCGATT
1 CACAGCTCGTATGAGCTTACCGATT
97589277 CACAGCT
1 CACAGCT
97589284 TGTCATAGCT
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
24 1 0.02
25 44 0.96
26 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (25 bp):
CACAGCTCGTATGAGCTTACCGATT
Found at i:97597114 original size:46 final size:46
Alignment explanation
Indices: 97597062--97597327 Score: 334
Period size: 46 Copynumber: 6.0 Consensus size: 46
97597052 AGTGTGCTCT
97597062 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
97597108 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAA-
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
97597153 C----ATG---TGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
97597192 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
97597238 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
97597284 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
97597328 TCACGTCAAA
Statistics
Matches: 195, Mismatches: 16, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
38 33 0.17
39 1 0.01
41 3 0.02
43 3 0.02
45 2 0.01
46 153 0.78
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:97597214 original size:84 final size:85
Alignment explanation
Indices: 97597072--97597317 Score: 343
Period size: 84 Copynumber: 2.8 Consensus size: 85
97597062 CTGATATGAA
97597072 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTG
97597137 AAAGATACCATGACAACATG
66 AAAGATACCATGACAACATG
*
97597157 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAACGTGTAAGACCATGGTTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTG
*
97597221 AAAGATACCATGACAACGTG
66 AAAGATACCATGACAACATG
* * * *
97597241 ACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGAC
1 --ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAATGTGTAAGAC
*
97597305 CATAGTTGAAAGA
58 CATGGTTGAAAGA
97597318 CACTATGGCA
Statistics
Matches: 144, Mismatches: 8, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
84 82 0.57
87 2 0.01
90 1 0.01
91 1 0.01
92 58 0.40
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (85 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTG
AAAGATACCATGACAACATG
Found at i:97597633 original size:23 final size:25
Alignment explanation
Indices: 97597588--97597634 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
97597578 AATAAATATA
*
97597588 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
97597613 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
97597635 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:97613479 original size:9 final size:9
Alignment explanation
Indices: 97613465--97613489 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
97613455 ATAATTATAT
97613465 ATAAAATAA
1 ATAAAATAA
97613474 ATAAAATAA
1 ATAAAATAA
97613483 ATAAAAT
1 ATAAAAT
97613490 TCAATATGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
ATAAAATAA
Found at i:97613556 original size:15 final size:16
Alignment explanation
Indices: 97613525--97613559 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
97613515 AAAAAATTAT
97613525 AAAT-AGTTTTAATAA
1 AAATAAGTTTTAATAA
97613540 AAATAAGTTTTAA-AA
1 AAATAAGTTTTAATAA
97613555 AAATA
1 AAATA
97613560 TATATCATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (16 bp):
AAATAAGTTTTAATAA
Found at i:97615333 original size:3 final size:3
Alignment explanation
Indices: 97615325--97615666 Score: 114
Period size: 3 Copynumber: 113.0 Consensus size: 3
97615315 TAATTTAATA
* * * * *
97615325 TAT TAT TAT TAT TATT TCT TCT TCT TAT TAT TAT T-T TAC TGT TACT
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * * *
97615371 TA- TATT TAT TAT CAT TAC TAT TAT T-T TAC TAT TAT TAT T-T TCAC
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
* * * * * *
97615415 TAT CT-T CAT TAT TAT TAT TAC TAT TAT TAT TCT CAT TAT CTAC TAC
1 TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
** * * * *
97615461 TAT TATT TAT TAT CGT TAT TAC CAT TAT CAT TAC TAT TACT TA- TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT
* * **
97615507 T-T TAT TAT TAT GAT TAT TAT TATT TATT TAT TAT T-T ATAA TAT GGT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TA-T TAT TAT TAT -TAT TAT TAT
* * * * * *
97615553 TGT TAT TAT TAT TAT TAT TTT TAAT TAC TGT TAC TAT TAT T-T CTTT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT -TAT
* ** * *
97615599 TAT TAT T-T AAT ATAT TAT TAT TAT CCT GT-T TAT TAT TGT TAT TAC
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
* * *
97615644 TAT T-G TAC TAT TAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT
97615667 ACTTTCACCT
Statistics
Matches: 246, Mismatches: 67, Indels: 52
0.67 0.18 0.14
Matches are distributed among these distances:
2 17 0.07
3 200 0.81
4 29 0.12
ACGTcount: A:0.28, C:0.09, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:97615393 original size:36 final size:34
Alignment explanation
Indices: 97615353--97615542 Score: 121
Period size: 35 Copynumber: 5.6 Consensus size: 34
97615343 TTCTTCTTAT
*
97615353 TATTATTTTACTGTTACTTATATTTATTATCATTAC
1 TATTATTTTACTATTA-TTAT-TTTATTATCATTAC
* *
97615389 TATTATTTTACTATTATTATTTTCACTATC-TTCAT
1 TATTATTTTACTATTATTATTTT-ATTATCATT-AC
* *
97615424 TATTATTATTACTATTATTATTCTCATTATCTACTAC
1 TATTATT-TTACTATTATTATT-TTATTATC-ATTAC
* ** **
97615461 TATTA-TTTATTATCGTTATTACCATTATCATTAC
1 TATTATTTTACTATTATTATT-TTATTATCATTAC
* * *
97615495 TATTA-CTTA-TATT-TTA--TTATTATGATTAT
1 TATTATTTTACTATTATTATTTTATTATCATTAC
97615524 TATTA-TTTA-T-TTATTATTT
1 TATTATTTTACTATTATTATTT
97615543 ATAATATGGT
Statistics
Matches: 125, Mismatches: 20, Indels: 23
0.74 0.12 0.14
Matches are distributed among these distances:
28 2 0.02
29 21 0.17
31 1 0.01
32 3 0.02
33 3 0.02
34 17 0.14
35 35 0.28
36 35 0.28
37 7 0.06
38 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.59
Consensus pattern (34 bp):
TATTATTTTACTATTATTATTTTATTATCATTAC
Found at i:97615408 original size:14 final size:15
Alignment explanation
Indices: 97615389--97615417 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
97615379 TTATCATTAC
97615389 TATTATTTT-ACTAT
1 TATTATTTTCACTAT
97615403 TATTATTTTCACTAT
1 TATTATTTTCACTAT
97615418 CTTCATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (15 bp):
TATTATTTTCACTAT
Found at i:97615522 original size:29 final size:26
Alignment explanation
Indices: 97615484--97615541 Score: 71
Period size: 29 Copynumber: 2.1 Consensus size: 26
97615474 CGTTATTACC
97615484 ATTATCATTACTATTACTTATATTTTATT
1 ATTATCATTACTATTA-TT-TA-TTTATT
* *
97615513 ATTATGATTATTATTATTTATTTATT
1 ATTATCATTACTATTATTTATTTATT
97615539 ATT
1 ATT
97615542 TATAATATGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 9 0.33
27 2 0.07
28 2 0.07
29 14 0.52
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (26 bp):
ATTATCATTACTATTATTTATTTATT
Found at i:97615529 original size:41 final size:40
Alignment explanation
Indices: 97615391--97615529 Score: 98
Period size: 41 Copynumber: 3.5 Consensus size: 40
97615381 ATCATTACTA
* *
97615391 TTATT-TTACTATTATTATTTTCACTATCT--T-C-ATTA-
1 TTATTATTA-TATTATTATTATCATTATCTACTACTATTAT
*
97615426 TTATTATTACTATTATTATTCTCATTATCTACTACTATTAT
1 TTATTATTA-TATTATTATTATCATTATCTACTACTATTAT
** *
97615467 TTATTATCGT-TATTACCATTATCATTA-CTATTACT-TATATT
1 TTATTAT--TATATTATTATTATCATTATCTACTACTAT-TA-T
97615508 TTATTATTATGATTATTATTAT
1 TTATTATTAT-ATTATTATTAT
97615530 TTATTTATTA
Statistics
Matches: 84, Mismatches: 8, Indels: 18
0.76 0.07 0.16
Matches are distributed among these distances:
35 5 0.06
36 22 0.26
38 1 0.01
39 3 0.04
40 14 0.17
41 38 0.45
43 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.01, T:0.58
Consensus pattern (40 bp):
TTATTATTATATTATTATTATCATTATCTACTACTATTAT
Found at i:97615717 original size:19 final size:16
Alignment explanation
Indices: 97615678--97615725 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 16
97615668 CTTTCACCTA
97615678 TATTT-GTTTTCTTAT
1 TATTTAGTTTTCTTAT
97615693 TATTTAGTTTTCATTTAT
1 TATTTAGTTTTC--TTAT
*
97615711 CTATTTATTTTTCTT
1 -TATTTAGTTTTCTT
97615726 GCCTACTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
15 5 0.18
16 6 0.21
17 2 0.07
18 4 0.14
19 11 0.39
ACGTcount: A:0.17, C:0.08, G:0.04, T:0.71
Consensus pattern (16 bp):
TATTTAGTTTTCTTAT
Found at i:97620475 original size:46 final size:46
Alignment explanation
Indices: 97620425--97620645 Score: 291
Period size: 46 Copynumber: 4.8 Consensus size: 46
97620415 CTATGATAGA
* *
97620425 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG
*
97620471 AAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACGTGACATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG
* **
97620517 AAATGTGTAAGACCATGGATGAAAGATACCATGGCAACGTGACGGGG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC-ATG
** * *
97620564 AAATGAATAAGACCATGGTTGAATGATACCATGGCAACATGACA-G
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG
* * * *
97620609 AAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 -AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
97620646 TCATGTCGAA
Statistics
Matches: 155, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
45 1 0.01
46 115 0.74
47 39 0.25
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (46 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG
Found at i:97620607 original size:93 final size:92
Alignment explanation
Indices: 97620417--97620645 Score: 298
Period size: 93 Copynumber: 2.5 Consensus size: 92
97620407 AGTGTGCTCT
* * * **
97620417 ATGATAGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 ATGACAGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGAGGAAATGAATAAG
97620482 ACCATGGTTGAAAGATACCATAGCAAC
66 ACCATGGTTGAAAGATACCATAGCAAC
* * * *
97620509 GTGACATG-AAATGTGTAAGACCATGGATGAAAGATACCATGGCAACGTGACGGGGAAATGAATA
1 ATGACA-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-GAGGAAATGAATA
* *
97620573 AGACCATGGTTGAATGATACCATGGCAAC
64 AGACCATGGTTGAAAGATACCATAGCAAC
* * * *
97620602 ATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 ATGACAGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
97620646 TCATGTCGAA
Statistics
Matches: 117, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
92 45 0.38
93 72 0.62
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (92 bp):
ATGACAGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGAGGAAATGAATAAG
ACCATGGTTGAAAGATACCATAGCAAC
Found at i:97621898 original size:9 final size:10
Alignment explanation
Indices: 97621880--97621912 Score: 50
Period size: 9 Copynumber: 3.3 Consensus size: 10
97621870 TCTCTTTCTT
97621880 TTTGCATGCA
1 TTTGCATGCA
97621890 TTT-CATGCA
1 TTTGCATGCA
97621899 TTTGCATTGCA
1 TTTGCA-TGCA
97621910 TTT
1 TTT
97621913 TTAGTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.43
10 5 0.24
11 7 0.33
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (10 bp):
TTTGCATGCA
Found at i:97623780 original size:103 final size:103
Alignment explanation
Indices: 97623601--97623811 Score: 415
Period size: 103 Copynumber: 2.1 Consensus size: 103
97623591 CTAACATAAT
97623601 CATTATCTGCATATACAGATTTTTAGAGTACTTGTTATCCATACTTCATCGGATCCATTTATATA
1 CATTATCTGCATATACAGATTTTTAGAGTACTTGTTATCCATACTTCATCGGATCCATTTATATA
97623666 TTTGTTCAATTACGTATACCAAAAGCATAATTTTTATA
66 TTTGTTCAATTACGTATACCAAAAGCATAATTTTTATA
97623704 CATTATCTGCATATACAGATTTTTAGAGTACTTGTTATCCATACTTCATCGGATCCATTTATATA
1 CATTATCTGCATATACAGATTTTTAGAGTACTTGTTATCCATACTTCATCGGATCCATTTATATA
97623769 TTTGTTCAATTACGTATACCAAAAGCATAATTTTTATA
66 TTTGTTCAATTACGTATACCAAAAGCATAATTTTTATA
97623807 C-TTAT
1 CATTAT
97623812 AAACTATAAA
Statistics
Matches: 108, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
102 4 0.04
103 104 0.96
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.42
Consensus pattern (103 bp):
CATTATCTGCATATACAGATTTTTAGAGTACTTGTTATCCATACTTCATCGGATCCATTTATATA
TTTGTTCAATTACGTATACCAAAAGCATAATTTTTATA
Found at i:97624109 original size:41 final size:41
Alignment explanation
Indices: 97624059--97624316 Score: 399
Period size: 41 Copynumber: 6.3 Consensus size: 41
97624049 AATTCATCAT
* *
97624059 ATTCGGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
97624100 ATTCAGATCACCGGCGCTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
97624141 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
97624182 ATTCAGATCACCGGCGCTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
97624223 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
97624264 ATTCAGATCACCGGCGCTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
97624305 ATTCATATCACC
1 ATTCAGATCACC
97624317 AATTCCAAAC
Statistics
Matches: 196, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 196 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
Found at i:97624202 original size:82 final size:82
Alignment explanation
Indices: 97624065--97624316 Score: 504
Period size: 82 Copynumber: 3.1 Consensus size: 82
97624055 TCATATTCGG
97624065 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
97624130 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
97624147 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
97624212 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
97624229 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
97624294 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
97624311 ATCACC
1 ATCACC
97624317 AATTCCAAAC
Statistics
Matches: 170, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 170 1.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (82 bp):
ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCGCTTAGCCTGCTAGG
TTTATAACCTGATTCAT
Found at i:97624552 original size:19 final size:19
Alignment explanation
Indices: 97624528--97624564 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
97624518 TTGTTCGATC
*
97624528 CACACATATATATATATTA
1 CACACATATACATATATTA
97624547 CACACATATACATATATT
1 CACACATATACATATATT
97624565 CGCACATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (19 bp):
CACACATATACATATATTA
Found at i:97629003 original size:88 final size:86
Alignment explanation
Indices: 97628854--97629436 Score: 666
Period size: 87 Copynumber: 7.0 Consensus size: 86
97628844 TAGCAACGTT
97628854 TGAATTTACAGATCTTATCACCCTAAGCAGTA-AGGAAACAGATCGAAGGCGATGGGCCTTAAAC
1 TGAATTTACAGATCTTATCACCCTAAGCAGTAGAGG-AACAGATCGAAGGCGATGGGCCTTAAAC
97628918 TCCTAAGCAGTAGGGTTAACAGGC
65 -CCTAAGCAGTA-GGTTAACAGGC
* *
97628942 TGAATTTACAGATCTTATCACCCTAAACAGTAGAGGAACAGATCGAAGGTGATGGGCCTTAAACC
1 TGAATTTACAGATCTTATCACCCTAAGCAGTAGAGGAACAGATCGAAGGCGATGGGCCTTAAACC
97629007 CTAA-C---AGG-----A---
66 CTAAGCAGTAGGTTAACAGGC
* * *
97629016 TAAATTTACAAATCTTATCACCCTAAGCAGTAG-GGAAACAGATCGAAGGCGATAGGCCTTAAAC
1 TGAATTTACAGATCTTATCACCCTAAGCAGTAGAGG-AACAGATCGAAGGCGATGGGCCTTAAAC
*
97629080 CTCTAAGTAGTAGGTTAACAGGC
65 C-CTAAGCAGTAGGTTAACAGGC
* *
97629103 TGAATTTACAGATCTTATCACCCTAAGCAATA-AGGAAACGGATCGAAGGCGATGGGCCTTAAAC
1 TGAATTTACAGATCTTATCACCCTAAGCAGTAGAGG-AACAGATCGAAGGCGATGGGCCTTAAA-
*
97629167 CCCTAAGAAGTAGGGTTAACAGGC
64 CCCTAAGCAGTA-GGTTAACAGGC
* * *
97629191 TGAATTTACAGATCTTATCACCCTAAACAGTAGGGGAACAGATCGAAGGTGATGGGCCTTAAACC
1 TGAATTTACAGATCTTATCACCCTAAGCAGTAGAGGAACAGATCGAAGGCGATGGGCCTTAAACC
97629256 CTAA-C---AGG-----A---
66 CTAAGCAGTAGGTTAACAGGC
* *
97629265 TGAATTTACAAATCTTATCACCCTAAGCAGTAG-GGAAACAGATCGAAGGCGATAGGCCTTAAAC
1 TGAATTTACAGATCTTATCACCCTAAGCAGTAGAGG-AACAGATCGAAGGCGATGGGCCTTAAAC
* * *
97629329 CTCTAAGCAATAGGGTAACAGGA
65 C-CTAAGCAGTAGGTTAACAGGC
* * *
97629352 TGAATTTACAGATCTTATCACCCTTAGTAGTAG-GGAAACAGATTGAAGGCGATGGGCCTTAAAC
1 TGAATTTACAGATCTTATCACCCTAAGCAGTAGAGG-AACAGATCGAAGGCGATGGGCCTTAAA-
*
97629416 CCCTAAGCAGTAGGGTAACAG
64 CCCTAAGCAGTAGGTTAACAG
97629437 ATCGAAGGCG
Statistics
Matches: 431, Mismatches: 30, Indels: 69
0.81 0.06 0.13
Matches are distributed among these distances:
73 4 0.01
74 115 0.27
75 8 0.02
76 1 0.00
77 2 0.00
79 6 0.01
82 4 0.01
83 2 0.00
84 2 0.00
86 1 0.00
87 153 0.35
88 128 0.30
89 5 0.01
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.22
Consensus pattern (86 bp):
TGAATTTACAGATCTTATCACCCTAAGCAGTAGAGGAACAGATCGAAGGCGATGGGCCTTAAACC
CTAAGCAGTAGGTTAACAGGC
Found at i:97629056 original size:74 final size:75
Alignment explanation
Indices: 97628934--97629085 Score: 227
Period size: 74 Copynumber: 2.0 Consensus size: 75
97628924 GCAGTAGGGT
* * * * *
97628934 TAACAGGCTGAATTTACAGATCTTATCACCCTAAACAGTAGAGGAACAGATCGAAGGTGATGGGC
1 TAACAGGATAAATTTACAAATCTTATCACCCTAAACAGTAGAGGAACAGATCGAAGGCGATAGGC
97628999 CTTAAACC-C
66 CTTAAACCTC
*
97629008 TAACAGGATAAATTTACAAATCTTATCACCCTAAGCAGTAG-GGAAACAGATCGAAGGCGATAGG
1 TAACAGGATAAATTTACAAATCTTATCACCCTAAACAGTAGAGG-AACAGATCGAAGGCGATAGG
97629072 CCTTAAACCTC
65 CCTTAAACCTC
97629083 TAA
1 TAA
97629086 GTAGTAGGTT
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
73 2 0.03
74 64 0.91
75 4 0.06
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.22
Consensus pattern (75 bp):
TAACAGGATAAATTTACAAATCTTATCACCCTAAACAGTAGAGGAACAGATCGAAGGCGATAGGC
CTTAAACCTC
Found at i:97629289 original size:162 final size:161
Alignment explanation
Indices: 97629095--97629417 Score: 495
Period size: 162 Copynumber: 2.0 Consensus size: 161
97629085 AGTAGTAGGT
* * * *
97629095 TAACAGGCTGAATTTACAGATCTTATCACCCTAAGCAATAAGGAAACGGATCGAAGGCGATGGGC
1 TAACAGGATGAATTTACAAATCTTATCACCCTAAGCAATAAGGAAACAGATCGAAGGCGATAGGC
*
97629160 CTTAAACCCCTAAG-AAGTAGGGTTAACAGGCTGAATTTACAGATCTTATCACCCTAAACAGTAG
66 CTTAAACCCCTAAGCAA-TAGGG-TAACAGGATGAATTTACAGATCTTATCACCCTAAACAGTAG
* *
97629224 GGGAACAGATCGAAGGTGATGGGCCTTAAACCC
129 GGAAACAGATCGAAGGCGATGGGCCTTAAACCC
* *
97629257 TAACAGGATGAATTTACAAATCTTATCACCCTAAGCAGTAGGGAAACAGATCGAAGGCGATAGGC
1 TAACAGGATGAATTTACAAATCTTATCACCCTAAGCAATAAGGAAACAGATCGAAGGCGATAGGC
* * **
97629322 CTTAAACCTCTAAGCAATAGGGTAACAGGATGAATTTACAGATCTTATCACCCTTAGTAGTAGGG
66 CTTAAACCCCTAAGCAATAGGGTAACAGGATGAATTTACAGATCTTATCACCCTAAACAGTAGGG
*
97629387 AAACAGATTGAAGGCGATGGGCCTTAAACCC
131 AAACAGATCGAAGGCGATGGGCCTTAAACCC
97629418 CTAAGCAGTA
Statistics
Matches: 146, Mismatches: 14, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
161 67 0.46
162 77 0.53
163 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (161 bp):
TAACAGGATGAATTTACAAATCTTATCACCCTAAGCAATAAGGAAACAGATCGAAGGCGATAGGC
CTTAAACCCCTAAGCAATAGGGTAACAGGATGAATTTACAGATCTTATCACCCTAAACAGTAGGG
AAACAGATCGAAGGCGATGGGCCTTAAACCC
Found at i:97629392 original size:43 final size:43
Alignment explanation
Indices: 97629258--97630089 Score: 320
Period size: 43 Copynumber: 19.1 Consensus size: 43
97629248 CTTAAACCCT
*
97629258 AACAGGATGAATTTACAAATCTTATCACCCTAAGCAGTAGGGA
1 AACAGGATGAATTTACAGATCTTATCACCCTAAGCAGTAGGGA
*** * ** * * *
97629301 AACA-GATCGAAGGCGATAGGCCTTA-AACCTCTAAGCAATAGGGT
1 AACAGGAT-GAA-TTTACAGATCTTATCACC-CTAAGCAGTAGGGA
* *
97629345 AACAGGATGAATTTACAGATCTTATCACCCTTAGTAGTAGGGA
1 AACAGGATGAATTTACAGATCTTATCACCCTAAGCAGTAGGGA
*** ** ** * *
97629388 AACA-GATTGAAGGCGATGGGCCTTA-AACCCCTAAGCAGTAGGGT
1 AACAGGA-TGAA-TTTACAGATCTTATCA-CCCTAAGCAGTAGGGA
*** ** ** * * *
97629432 AACA-GATCGAAGGCGATGGGCCTTAATC-CCTTAAGTAGTAGGGT
1 AACAGGAT-GAA-TTTACAGATCTT-ATCACCCTAAGCAGTAGGGA
* *
97629476 AACAGGCTGAATTTACAGATATTATCACCCTAAGCAGTAGGGA
1 AACAGGATGAATTTACAGATCTTATCACCCTAAGCAGTAGGGA
*** ** ** * *
97629519 AACA-GATCGAAGGCGATGGGCCTTA-AACCCCTAAGCAGTAGGGT
1 AACAGGAT-GAA-TTTACAGATCTTATCA-CCCTAAGCAGTAGGGA
*
97629563 AACAGGCTGAATTTACAGATCTTATCACCCTAAGCAGTAGGGA
1 AACAGGATGAATTTACAGATCTTATCACCCTAAGCAGTAGGGA
*** ** ** * * ** *
97629606 AACA-GATTGAAGGCGATGGGCCTTA-AACCCCTAAGCCGTAAAGT
1 AACAGGA-TGAA-TTTACAGATCTTATCA-CCCTAAGCAGTAGGGA
*
97629650 AACAGGCTGAATTTACAGATCTTATCACCCTAAGCAGTAGGGA
1 AACAGGATGAATTTACAGATCTTATCACCCTAAGCAGTAGGGA
** * * *
97629693 AACA-GATCGAA--GGCGATGAGCCTTA-AACCCCTAAGCAGTAGGGT
1 AACAGGAT-GAATTTAC-A-GA-TCTTATCA-CCCTAAGCAGTAGGGA
* * * * *
97629737 AACAGGCTGAATTTATAGATTTTATCACTCTAAGCAGAAGGGA
1 AACAGGATGAATTTACAGATCTTATCACCCTAAGCAGTAGGGA
* *** * ** * * *
97629780 CACA-GATCGAAGGCGATAGGCCTTA-AACCCCTAAACAGTAGGGT
1 AACAGGAT-GAA-TTTACAGATCTTATCA-CCCTAAGCAGTAGGGA
* * *
97629824 AACAGGCTGAATTTACAGATCTTATCACCCTAAGTAGTAGGGT
1 AACAGGATGAATTTACAGATCTTATCACCCTAAGCAGTAGGGA
* *
97629867 AACAGGCTGAATTTACAGATCTTATCACCCTAAGTAGTAGGGA
1 AACAGGATGAATTTACAGATCTTATCACCCTAAGCAGTAGGGA
*** ** ** * * *
97629910 AACA-GATCGAAGGCGATGGGCCTTA-AACCCCTAAGTAGTAGGGT
1 AACAGGAT-GAA-TTTACAGATCTTATCA-CCCTAAGCAGTAGGGA
* * *
97629954 AACAGGCTGAATTTACAGATCTTATCACCCTAAGCAGCAAGGA
1 AACAGGATGAATTTACAGATCTTATCACCCTAAGCAGTAGGGA
*** * ** * * *
97629997 AACA-GATCGAAGGCGATAGGCCTTA-AACCCCTAAGTAGTAGGGT
1 AACAGGAT-GAA-TTTACAGATCTTATCA-CCCTAAGCAGTAGGGA
97630041 AACA-GACTGAATTTACAGATCTTATCACCCTAAGCAGTAGGGA
1 AACAGGA-TGAATTTACAGATCTTATCACCCTAAGCAGTAGGGA
97630084 AACAGG
1 AACAGG
97630090 TCGAAAGCGA
Statistics
Matches: 562, Mismatches: 179, Indels: 95
0.67 0.21 0.11
Matches are distributed among these distances:
41 1 0.00
42 20 0.04
43 265 0.47
44 259 0.46
45 17 0.03
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (43 bp):
AACAGGATGAATTTACAGATCTTATCACCCTAAGCAGTAGGGA
Found at i:97629463 original size:87 final size:87
Alignment explanation
Indices: 97629278--97629480 Score: 216
Period size: 87 Copynumber: 2.3 Consensus size: 87
97629268 ATTTACAAAT
* *
97629278 CTTATCACCC-TAAGCAGTAGGGAAACAGATCGAAGGCGATAGGCCTTAAACCTCTAAGCAATAG
1 CTTAT-ACCCTTAAGTAGTAGGGAAACAGATCGAAGGCGATAGGCCTTAAACCCCTAAGCAATAG
*** *
97629342 GGTAACAGGATGAATTTACAGAT
65 GGTAACAGGATGAAGCGACAGAC
* * *
97629365 CTTATCACCCTT-AGTAGTAGGGAAACAGATTGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAG
1 CTTAT-ACCCTTAAGTAGTAGGGAAACAGATCGAAGGCGATAGGCCTTAAACCCCTAAGCAATAG
** *
97629429 GGTAACA-GATCGAAGGCGATGGGC
65 GGTAACAGGAT-GAA-GCGACAGAC
*
97629453 CTTA-ATCCCTTAAGTAGTAGGGTAACAG
1 CTTATA-CCCTTAAGTAGTAGGGAAACAG
97629481 GCTGAATTTA
Statistics
Matches: 98, Mismatches: 13, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
86 4 0.04
87 72 0.73
88 22 0.22
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (87 bp):
CTTATACCCTTAAGTAGTAGGGAAACAGATCGAAGGCGATAGGCCTTAAACCCCTAAGCAATAGG
GTAACAGGATGAAGCGACAGAC
Found at i:97629474 original size:249 final size:249
Alignment explanation
Indices: 97628854--97629436 Score: 1033
Period size: 249 Copynumber: 2.3 Consensus size: 249
97628844 TAGCAACGTT
*
97628854 TGAATTTACAGATCTTATCACCCTAAGCAGTAAGGAAACAGATCGAAGGCGATGGGCCTTAAACT
1 TGAATTTACAGATCTTATCACCCTAAGCAGTAAGGAAACAGATCGAAGGCGATGGGCCTTAAACC
*
97628919 CCTAAGCAGTAGGGTTAACAGGCTGAATTTACAGATCTTATCACCCTAAACAGTAGAGGAACAGA
66 CCTAAGCAGTAGGGTTAACAGGCTGAATTTACAGATCTTATCACCCTAAACAGTAGGGGAACAGA
97628984 TCGAAGGTGATGGGCCTTAAACCCTAACAGGATAAATTTACAAATCTTATCACCCTAAGCAGTAG
131 TCGAAGGTGATGGGCCTTAAACCCTAACAGGATAAATTTACAAATCTTATCACCCTAAGCAGTAG
* * * *
97629049 GGAAACAGATCGAAGGCGATAGGCCTTAAACCTCTAAGTAGTAGGTTAACAGGC
196 GGAAACAGATCGAAGGCGATAGGCCTTAAACCTCTAAGCAATAGGGTAACAGGA
* *
97629103 TGAATTTACAGATCTTATCACCCTAAGCAATAAGGAAACGGATCGAAGGCGATGGGCCTTAAACC
1 TGAATTTACAGATCTTATCACCCTAAGCAGTAAGGAAACAGATCGAAGGCGATGGGCCTTAAACC
*
97629168 CCTAAGAAGTAGGGTTAACAGGCTGAATTTACAGATCTTATCACCCTAAACAGTAGGGGAACAGA
66 CCTAAGCAGTAGGGTTAACAGGCTGAATTTACAGATCTTATCACCCTAAACAGTAGGGGAACAGA
*
97629233 TCGAAGGTGATGGGCCTTAAACCCTAACAGGATGAATTTACAAATCTTATCACCCTAAGCAGTAG
131 TCGAAGGTGATGGGCCTTAAACCCTAACAGGATAAATTTACAAATCTTATCACCCTAAGCAGTAG
97629298 GGAAACAGATCGAAGGCGATAGGCCTTAAACCTCTAAGCAATAGGGTAACAGGA
196 GGAAACAGATCGAAGGCGATAGGCCTTAAACCTCTAAGCAATAGGGTAACAGGA
* * * *
97629352 TGAATTTACAGATCTTATCACCCTTAGTAGTAGGGAAACAGATTGAAGGCGATGGGCCTTAAACC
1 TGAATTTACAGATCTTATCACCCTAAGCAGTAAGGAAACAGATCGAAGGCGATGGGCCTTAAACC
97629417 CCTAAGCAGTAGGG-TAACAG
66 CCTAAGCAGTAGGGTTAACAG
97629437 ATCGAAGGCG
Statistics
Matches: 317, Mismatches: 17, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
248 6 0.02
249 311 0.98
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.22
Consensus pattern (249 bp):
TGAATTTACAGATCTTATCACCCTAAGCAGTAAGGAAACAGATCGAAGGCGATGGGCCTTAAACC
CCTAAGCAGTAGGGTTAACAGGCTGAATTTACAGATCTTATCACCCTAAACAGTAGGGGAACAGA
TCGAAGGTGATGGGCCTTAAACCCTAACAGGATAAATTTACAAATCTTATCACCCTAAGCAGTAG
GGAAACAGATCGAAGGCGATAGGCCTTAAACCTCTAAGCAATAGGGTAACAGGA
Found at i:97629507 original size:87 final size:87
Alignment explanation
Indices: 97629416--97629871 Score: 741
Period size: 87 Copynumber: 5.2 Consensus size: 87
97629406 GGCCTTAAAC
* * * *
97629416 CCCTAAGCAGTAGGGTAACAGATCGAAGGCGATGGGCCTTAATCCCTTAAGTAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
*
97629481 GCTGAATTTACAGATATTATCA
66 GCTGAATTTACAGATCTTATCA
97629503 CCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
97629568 GCTGAATTTACAGATCTTATCA
66 GCTGAATTTACAGATCTTATCA
* * **
97629590 CCCTAAGCAGTAGGGAAACAGATTGAAGGCGATGGGCCTTAAACCCCTAAGCCGTAAAGTAACAG
1 CCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
97629655 GCTGAATTTACAGATCTTATCA
66 GCTGAATTTACAGATCTTATCA
*
97629677 CCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGAGCCTTAAACCCCTAAGCAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
* *
97629742 GCTGAATTTATAGATTTTATCA
66 GCTGAATTTACAGATCTTATCA
* * * * *
97629764 CTCTAAGCAGAAGGGACACAGATCGAAGGCGATAGGCCTTAAACCCCTAAACAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
97629829 GCTGAATTTACAGATCTTATCA
66 GCTGAATTTACAGATCTTATCA
* *
97629851 CCCTAAGTAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGAAACAG
97629872 GCTGAATTTA
Statistics
Matches: 340, Mismatches: 29, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 340 1.00
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (87 bp):
CCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
GCTGAATTTACAGATCTTATCA
Found at i:97629654 original size:218 final size:218
Alignment explanation
Indices: 97629257--97629654 Score: 688
Period size: 218 Copynumber: 1.8 Consensus size: 218
97629247 CCTTAAACCC
*
97629257 TAACAGGATGAATTTACAAATCTTATCACCCTAAGCAGTAGGGAAACAGATCGAAGGCGATAGGC
1 TAACAGGATGAATTTACAAATATTATCACCCTAAGCAGTAGGGAAACAGATCGAAGGCGATAGGC
* * *
97629322 CTTAAACCTCTAAGCAATAGGGTAACAGGATGAATTTACAGATCTTATCACCCTTAGTAGTAGGG
66 CTTAAACCCCTAAGCAATAGGGTAACAGGATGAATTTACAGATCTTATCACCCTAAGCAGTAGGG
**
97629387 AAACAGATTGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGATCGAAGGCGATGGG
131 AAACAGATTGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAAAGTAACAGATCGAAGGCGATGGG
97629452 CCTTAATCCCTTAAGTAGTAGGG
196 CCTTAATCCCTTAAGTAGTAGGG
* * *
97629475 TAACAGGCTGAATTTACAGATATTATCACCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGC
1 TAACAGGATGAATTTACAAATATTATCACCCTAAGCAGTAGGGAAACAGATCGAAGGCGATAGGC
* *
97629540 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGCAGTAGGG
66 CTTAAACCCCTAAGCAATAGGGTAACAGGATGAATTTACAGATCTTATCACCCTAAGCAGTAGGG
*
97629605 AAACAGATTGAAGGCGATGGGCCTTAAACCCCTAAGCCGTAAAGTAACAG
131 AAACAGATTGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAAAGTAACAG
97629655 GCTGAATTTA
Statistics
Matches: 168, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
218 168 1.00
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (218 bp):
TAACAGGATGAATTTACAAATATTATCACCCTAAGCAGTAGGGAAACAGATCGAAGGCGATAGGC
CTTAAACCCCTAAGCAATAGGGTAACAGGATGAATTTACAGATCTTATCACCCTAAGCAGTAGGG
AAACAGATTGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAAAGTAACAGATCGAAGGCGATGGG
CCTTAATCCCTTAAGTAGTAGGG
Found at i:97629883 original size:217 final size:217
Alignment explanation
Indices: 97629634--97630089 Score: 761
Period size: 217 Copynumber: 2.1 Consensus size: 217
97629624 GGCCTTAAAC
* **
97629634 CCCTAAGCCGTAAAGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGCAGTAGGGAAACAGA
* *
97629699 TCGAAGGCGATGAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTATAGATTTTATCA
66 TCGAAGGCGATGAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTATCA
* *
97629764 CTCTAAGCAG-AAGGGACACAGATCGAAGGCGATAGGCCTTAAACCCCTAAACAGTAGGGTAACA
131 CCCTAAGCAGCAA-GGAAACAGATCGAAGGCGATAGGCCTTAAACCCCTAAACAGTAGGGTAACA
*
97629828 GGCTGAATTTACAGATCTTATCA
195 GACTGAATTTACAGATCTTATCA
* *
97629851 CCCTAAGTAGTAGGGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGTAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGCAGTAGGGAAACAGA
* *
97629916 TCGAAGGCGATGGGCCTTAAACCCCTAAGTAGTAGGGTAACAGGCTGAATTTACAGATCTTATCA
66 TCGAAGGCGATGAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTATCA
**
97629981 CCCTAAGCAGCAAGGAAACAGATCGAAGGCGATAGGCCTTAAACCCCTAAGTAGTAGGGTAACAG
131 CCCTAAGCAGCAAGGAAACAGATCGAAGGCGATAGGCCTTAAACCCCTAAACAGTAGGGTAACAG
97630046 ACTGAATTTACAGATCTTATCA
196 ACTGAATTTACAGATCTTATCA
*
97630068 CCCTAAGCAGTAGGGAAACAGG
1 CCCTAAGCAGTAGGGTAACAGG
97630090 TCGAAAGCGA
Statistics
Matches: 222, Mismatches: 16, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
217 220 0.99
218 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (217 bp):
CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGCAGTAGGGAAACAGA
TCGAAGGCGATGAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTATCA
CCCTAAGCAGCAAGGAAACAGATCGAAGGCGATAGGCCTTAAACCCCTAAACAGTAGGGTAACAG
ACTGAATTTACAGATCTTATCA
Found at i:97629944 original size:261 final size:261
Alignment explanation
Indices: 97629331--97629958 Score: 807
Period size: 261 Copynumber: 2.4 Consensus size: 261
97629321 CCTTAAACCT
* * *
97629331 CTAAGCAATAGGGTAACAGGATGAATTTACAGATCTTATCACCCTTAGTAGTAGGGAAACAGATT
1 CTAAGCAGTAGGGTAACAGGATGAATTTACAGATCTTATCACCCTAAGTAGTAGGGAAACAGATC
* *
97629396 GAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGATCGAAGGCGATGGGCCTTAATCC
66 GAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGATCGAAGGCGATGAGCCTTAAACC
* * *
97629461 CTTAAGTAGTAGGGTAACAGGCTGAATTTACAGATATTATCACCCTAAGCAGTAGGGAAACAGAT
131 CCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATATTATCACCCTAAGCAGAAGGGAAACAGAT
* *
97629526 CGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTATCAC
196 CGAAGGCGATAGGCCTTAAACCCCTAAACAGTAGGGTAACAGGCTGAATTTACAGATCTTATCAC
97629591 C
261 C
* *** ** ** * ** ** *
97629592 CTAAGCAGTAGGGAAACA-GATTGAAGGCGATGGGCCTTA-AACCCCTAAGCCGTAAAGTAACAG
1 CTAAGCAGTAGGGTAACAGGA-TGAA-TTTACAGATCTTATCA-CCCTAAGTAGTAGGGAAACAG
* *** ** ** * *
97629655 -GCTGAA-TTTACAGATCTT-ATCACCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGAGCCTT
63 ATC-GAAGGCGATGGGCCTTAAAC-CCCTAAGCAGTAGGGTAACAGATCGAAGGCGATGAGCCTT
* * * *
97629717 AAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTATAGATTTTATCACTCTAAGCAGAAGGGACA
126 AAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATATTATCACCCTAAGCAGAAGGGAAA
97629782 CAGATCGAAGGCGATAGGCCTTAAACCCCTAAACAGTAGGGTAACAGGCTGAATTTACAGATCTT
191 CAGATCGAAGGCGATAGGCCTTAAACCCCTAAACAGTAGGGTAACAGGCTGAATTTACAGATCTT
97629847 ATCACC
256 ATCACC
* *
97629853 CTAAGTAGTAGGGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGTAGTAGGGAAACAGATC
1 CTAAGCAGTAGGGTAACAGGATGAATTTACAGATCTTATCACCCTAAGTAGTAGGGAAACAGATC
*
97629918 GAAGGCGATGGGCCTTAAACCCCTAAGTAGTAGGGTAACAG
66 GAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
97629959 GCTGAATTTA
Statistics
Matches: 292, Mismatches: 65, Indels: 20
0.77 0.17 0.05
Matches are distributed among these distances:
260 29 0.10
261 236 0.81
262 27 0.09
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (261 bp):
CTAAGCAGTAGGGTAACAGGATGAATTTACAGATCTTATCACCCTAAGTAGTAGGGAAACAGATC
GAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGATCGAAGGCGATGAGCCTTAAACC
CCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATATTATCACCCTAAGCAGAAGGGAAACAGAT
CGAAGGCGATAGGCCTTAAACCCCTAAACAGTAGGGTAACAGGCTGAATTTACAGATCTTATCAC
C
Found at i:97629955 original size:87 final size:87
Alignment explanation
Indices: 97629851--97630143 Score: 514
Period size: 87 Copynumber: 3.4 Consensus size: 87
97629841 GATCTTATCA
*
97629851 CCCTAAGTAGTAGGGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGTAGTAGGGAAACAGA
1 CCCTAAGTAGTAGGGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGCAGTAGGGAAACAGA
*
97629916 TCGAAGGCGATGGGCCTTAAAC
66 TCGAAGGCGATAGGCCTTAAAC
* *
97629938 CCCTAAGTAGTAGGGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGCAGCAAGGAAACAGA
1 CCCTAAGTAGTAGGGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGCAGTAGGGAAACAGA
97630003 TCGAAGGCGATAGGCCTTAAAC
66 TCGAAGGCGATAGGCCTTAAAC
* *
97630025 CCCTAAGTAGTAGGGTAACAGACTGAATTTACAGATCTTATCACCCTAAGCAGTAGGGAAACAGG
1 CCCTAAGTAGTAGGGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGCAGTAGGGAAACAGA
*
97630090 TCGAAAGCGATAGGCCTTAAAC
66 TCGAAGGCGATAGGCCTTAAAC
*
97630112 CCCTAAGCAGTAGGGTAACAGGCTGAATTTAC
1 CCCTAAGTAGTAGGGTAACAGGCTGAATTTAC
97630144 CTAAACAGTA
Statistics
Matches: 195, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 195 1.00
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (87 bp):
CCCTAAGTAGTAGGGTAACAGGCTGAATTTACAGATCTTATCACCCTAAGCAGTAGGGAAACAGA
TCGAAGGCGATAGGCCTTAAAC
Found at i:97631962 original size:23 final size:23
Alignment explanation
Indices: 97631936--97631980 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
97631926 TATCATTACT
97631936 ATTACTTATATTTTA-TTATTATG
1 ATTA-TTATATTTTATTTATTATG
* *
97631959 ATTATTGTTTTTTATTTATTAT
1 ATTATTATATTTTATTTATTAT
97631981 TTATAATATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (23 bp):
ATTATTATATTTTATTTATTATG
Found at i:97632100 original size:3 final size:3
Alignment explanation
Indices: 97631759--97632087 Score: 137
Period size: 3 Copynumber: 109.0 Consensus size: 3
97631749 TAATTTAATA
* * *
97631759 TAT TAT TATT TCT TAT TAT TAT TAT TAT TAT T-T TAC TGT TACT TA-
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
* * * *
97631804 TAT GTAT TAT CAT TAC TAT TAT TAC TAT TA- TAT TAC TAT TAT TAT
1 TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
97631849 T-T TCAC TAT T-T TCAT TAT TAT TAT TAC TAT TGT TAT T-T TCAT TAT
1 TAT T-AT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT
* * ** * * * *
97631894 CTAC TAC TAT TATT TAT TAT CGT TAT TAC CAT TAT CAT TAC TAT TACT
1 -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* *
97631942 TA- TAT T-T TAT TAT TAT GAT TAT TGT T-T T-T TATT TAT TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT
* ** * * *
97631983 ATAA TAT GGT TGT TAT TAT TAT TAT TCCT TAT TTT CTAT TAT TAT TAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT -TAT TAT TAT TAT
* * * * *
97632031 TAT TAT T-T TAAT TAC TGT TAC TAT TAT T-T CTTT TAT TAT T-T AAT
1 TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
97632075 ATAT TAT TAT TAT
1 -TAT TAT TAT TAT
97632088 CCTGTTTATT
Statistics
Matches: 241, Mismatches: 56, Indels: 58
0.68 0.16 0.16
Matches are distributed among these distances:
2 25 0.10
3 183 0.76
4 33 0.14
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:97632182 original size:19 final size:16
Alignment explanation
Indices: 97632143--97632190 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 16
97632133 CTTTCACCTA
97632143 TATTT-GTTTTCTTAT
1 TATTTAGTTTTCTTAT
97632158 TATTTAGTTTTCATTTAT
1 TATTTAGTTTTC--TTAT
*
97632176 CTATTTATTTTTCTT
1 -TATTTAGTTTTCTT
97632191 GCCTACTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
15 5 0.18
16 6 0.21
17 2 0.07
18 4 0.14
19 11 0.39
ACGTcount: A:0.17, C:0.08, G:0.04, T:0.71
Consensus pattern (16 bp):
TATTTAGTTTTCTTAT
Found at i:97635003 original size:53 final size:53
Alignment explanation
Indices: 97634922--97635072 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
97634912 CTTACACGGT
* *
97634922 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
* *
97634977 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTTACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
97635030 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
97635073 GCACACTTAT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:97640848 original size:3 final size:3
Alignment explanation
Indices: 97640840--97640865 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
97640830 AGAAGCTTTT
97640840 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
97640866 TTTTTGCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:97642260 original size:3 final size:3
Alignment explanation
Indices: 97642252--97642629 Score: 127
Period size: 3 Copynumber: 125.7 Consensus size: 3
97642242 CGTAAAAAAT
* *
97642252 TAA TAA TAA TAA TAA TAA TAA TAA TAA GCTAA TAA TGA CAA -AA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA --TAA TAA TAA TAA TAA TAA
* * * * * *
97642297 TGAA GAAA TAA TAA TAA GAA TAA TGA TAA TGA TAA TTA TAA -GA TAA
1 T-AA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
97642343 -AA T-A TAA TTA TAG T-A TAA -AA GTAA AAA TAA TAA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA
* * * * * * * *
97642385 TAA TAT TAA TAA AAA GAA TAA -AA -AA AAA CAA TGAA T-G TGA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
* * * * *
97642428 TAA CATA TAA TAA TAA TGA -AA TAA CAC TAG TAA TAGA -AA TATA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TA-A TAA
* * ** * * * *
97642474 -AA TAA CAA TAA TAA TAA TGA T-A TGT TAA AAA TAA TGA TAA AAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
97642520 TAA TAA CATA TGAA TAA TAA TAGA CTAA TAA TAA CAA TAG TAA AAA TAA
1 TAA TAA TA-A T-AA TAA TAA TA-A -TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
97642569 AAA TAA TAT TAA TGGAA TAA AAA TAA TAT TAA TAA TCA TAC TAA TAA
1 TAA TAA TAA TAA T--AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
97642616 TAA CAA TAA TAA TA
1 TAA TAA TAA TAA TA
97642630 TTAAAATTAA
Statistics
Matches: 269, Mismatches: 78, Indels: 56
0.67 0.19 0.14
Matches are distributed among these distances:
2 23 0.09
3 218 0.81
4 19 0.07
5 9 0.03
ACGTcount: A:0.61, C:0.03, G:0.07, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:97642589 original size:20 final size:20
Alignment explanation
Indices: 97642564--97642601 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
97642554 CAATAGTAAA
97642564 AATAAAAATAATATTAATGG
1 AATAAAAATAATATTAATGG
97642584 AATAAAAATAATATTAAT
1 AATAAAAATAATATTAAT
97642602 AATCATACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (20 bp):
AATAAAAATAATATTAATGG
Found at i:97648977 original size:136 final size:135
Alignment explanation
Indices: 97648680--97649018 Score: 455
Period size: 135 Copynumber: 2.5 Consensus size: 135
97648670 TACAGAGTTT
* *
97648680 ATCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGGTTAAACACAGCAGATCTTATCTTCGCTGA
1 ATCAACCTTATCTTCACTGAGCAGGAGTGAAGCAGGTTAAACACAGCAGATCTTATCTTCACTGA
*** * * *
97648745 GCATTGGCGGAACAGATCACATTGCAGTGAATCTTATCTCCATGTATCGGCAATGGAGCAAATTC
66 GCAGAAGCGGAACAAATCACATTGCAGCGAATCTTATCTCCATGTATCGGCAATAGAGCAAATTC
*
97648810 TAACC
131 CAACC
* * *
97648815 ATCAACCTTATCTTCACTGAGTAGGAGTGAAGTAGGTTAAACACAGCAGATCTTATTTTCACTGA
1 ATCAACCTTATCTTCACTGAGCAGGAGTGAAGCAGGTTAAACACAGCAGATCTTATCTTCACTGA
* * * * *
97648880 GCAGAAGCGGAGCAAATCACATTTTCAGCGAATCTTATTTCCATGTATCGGCAATAGAGTAGATT
66 GCAGAAGCGGAACAAATCACA-TTGCAGCGAATCTTATCTCCATGTATCGGCAATAGAGCAAATT
97648945 CCAACC
130 CCAACC
* * * ** *
97648951 ATTAACCTTATTTTCACTGAGCAGGAGTGAAGCAGGTTAAACATATTAG-CCTTATCTTCACTGA
1 ATCAACCTTATCTTCACTGAGCAGGAGTGAAGCAGGTTAAACACAGCAGATCTTATCTTCACTGA
97649015 GCAG
66 GCAG
97649019 GGGTGGAGCA
Statistics
Matches: 177, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
135 93 0.53
136 84 0.47
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (135 bp):
ATCAACCTTATCTTCACTGAGCAGGAGTGAAGCAGGTTAAACACAGCAGATCTTATCTTCACTGA
GCAGAAGCGGAACAAATCACATTGCAGCGAATCTTATCTCCATGTATCGGCAATAGAGCAAATTC
CAACC
Found at i:97649249 original size:45 final size:44
Alignment explanation
Indices: 97649136--97649254 Score: 150
Period size: 44 Copynumber: 2.7 Consensus size: 44
97649126 CAACCATCGA
* * *
97649136 CCTTATCTTCACTGAGCAGGAGTGAAGCAGGTTAAACATATCAG
1 CCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAG
*
97649180 CCTTATCTTCACTGAACAGGAGTGGAGCAGGCTAAACATACCAG
1 CCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAG
* **
97649224 ATCTTATCTTCGA-TGAGCAAAAGTGGAGCAG
1 -CCTTATCTTC-ACTGAGCAGGAGTGGAGCAG
97649255 ATCGTATCTC
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
44 40 0.62
45 24 0.37
46 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.24
Consensus pattern (44 bp):
CCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATACCAG
Found at i:97649256 original size:180 final size:180
Alignment explanation
Indices: 97648815--97649257 Score: 600
Period size: 180 Copynumber: 2.5 Consensus size: 180
97648805 AATTCTAACC
* * * * * * *
97648815 ATCAACCTTATCTTCACTGAGTAGGAGTGAAGTAGGTTAAACACAGCAGATCTTATTTTC-ACTG
1 ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAGCAGATCTTATCTTCGA-TG
* * * * *
97648879 AGCAGAAGCGGAGCAAATCACATTTTCAGCGAATCTTATTTCCATGTATCGGCAATAGAGTAGAT
65 AGCAGAAGCGGAGCAGATCACATTTTCAACAAATCTTATCTCCATGTATCGGCAATAGAGCAGAT
* *
97648944 TCCAACCATTAACCTTATTTTCACTGAGCAGGAGTGAAGCAGGTTAAACAT
130 TCCAACCATCAACCTTATCTTCACTGAGCAGGAGTGAAGCAGGTTAAACAT
* * ** * *
97648995 ATTAGCCTTATCTTCACTGAGCAGGGGTGGAGCAGGCTAAGTATAGCAGATCTTATCTTCGCTGG
1 ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAGCAGATCTTATCTTCGATGA
* * * * *
97649060 GCAGGAGCGAAGCAGATCACATTTTCAACAAATCTTATCTCCATGTATCGGTAATGGAGCATATT
66 GCAGAAGCGGAGCAGATCACATTTTCAACAAATCTTATCTCCATGTATCGGCAATAGAGCAGATT
*
97649125 CCAACCATCGACCTTATCTTCACTGAGCAGGAGTGAAGCAGGTTAAACAT
131 CCAACCATCAACCTTATCTTCACTGAGCAGGAGTGAAGCAGGTTAAACAT
* *
97649175 ATCAGCCTTATCTTCACTGAACAGGAGTGGAGCAGGCTAAACATACCAGATCTTATCTTCGATGA
1 ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAGCAGATCTTATCTTCGATGA
* *
97649240 GCAAAAGTGGAGCAGATC
66 GCAGAAGCGGAGCAGATC
97649258 GTATCTCTAC
Statistics
Matches: 224, Mismatches: 38, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
180 224 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (180 bp):
ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAACATAGCAGATCTTATCTTCGATGA
GCAGAAGCGGAGCAGATCACATTTTCAACAAATCTTATCTCCATGTATCGGCAATAGAGCAGATT
CCAACCATCAACCTTATCTTCACTGAGCAGGAGTGAAGCAGGTTAAACAT
Found at i:97650595 original size:14 final size:15
Alignment explanation
Indices: 97650574--97650615 Score: 68
Period size: 14 Copynumber: 2.9 Consensus size: 15
97650564 TTTTTCCTAC
*
97650574 TATTTATTATGCTAT
1 TATTTATTATACTAT
97650589 T-TTTATTATACTAT
1 TATTTATTATACTAT
97650603 TATTTATTATACT
1 TATTTATTATACT
97650616 TATCATATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (15 bp):
TATTTATTATACTAT
Found at i:97650737 original size:16 final size:16
Alignment explanation
Indices: 97650668--97650739 Score: 51
Period size: 16 Copynumber: 4.5 Consensus size: 16
97650658 TTTTTGTATT
97650668 ATTTATTTTAAAT-TA
1 ATTTATTTTAAATATA
* * *
97650683 TTTTTTTTCTATATATA
1 ATTTATTT-TAAATATA
* *
97650700 TATTT-TATTAAAAATTA
1 -ATTTATTTTAAATA-TA
97650717 A-TTATTTTAAATATA
1 ATTTATTTTAAATATA
97650732 ATTTATTT
1 ATTTATTT
97650740 CATTTATTAC
Statistics
Matches: 42, Mismatches: 9, Indels: 11
0.68 0.15 0.18
Matches are distributed among these distances:
15 11 0.26
16 22 0.52
17 6 0.14
18 3 0.07
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTTATTTTAAATATA
Found at i:97652546 original size:30 final size:30
Alignment explanation
Indices: 97652511--97652570 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
97652501 TATTTTATTA
*
97652511 TTAATTTTGTTATTATTTTAAATGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
97652541 TTAATTTTTTTATTATTTTAGAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
97652571 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.03, G:0.12, T:0.60
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:97653248 original size:16 final size:17
Alignment explanation
Indices: 97653227--97653259 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
97653217 ATTATTTAGA
97653227 TTTTA-TATAAATTTTG
1 TTTTATTATAAATTTTG
*
97653243 TTTTATTATTAATTTTG
1 TTTTATTATAAATTTTG
97653260 CTATTAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTATAAATTTTG
Found at i:97663572 original size:23 final size:22
Alignment explanation
Indices: 97663533--97663577 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
97663523 TTTAATACTT
*
97663533 ATAATTATTTTTAATTTTCTAAA
1 ATAATTATTTATAATTTT-TAAA
97663556 ATAATT-TTTATATATTTTTAAA
1 ATAATTATTTATA-ATTTTTAAA
97663578 GTTTTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
ATAATTATTTATAATTTTTAAA
Found at i:97665616 original size:43 final size:43
Alignment explanation
Indices: 97665569--97665679 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 43
97665559 GCACTCATGA
97665569 TGCATCATC-GAATAAACCGAAGCAATCATACTAGCACACATAG
1 TGCATCATCAG-ATAAACCGAAGCAATCATACTAGCACACATAG
* * *
97665612 TGCAT-ATTCAGATAAACCGAAGCAATCATATTGGCATACATAG
1 TGCATCA-TCAGATAAACCGAAGCAATCATACTAGCACACATAG
* * *
97665655 CGCATCATTAGATAAATCGAAGCAA
1 TGCATCATCAGATAAACCGAAGCAA
97665680 ATAAATTGAC
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
42 1 0.02
43 56 0.95
44 2 0.03
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (43 bp):
TGCATCATCAGATAAACCGAAGCAATCATACTAGCACACATAG
Found at i:97665720 original size:42 final size:42
Alignment explanation
Indices: 97665660--97665742 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
97665650 CATAGCGCAT
* *
97665660 CATTAGATAAATCGAAGCAAATAAATTGACACATAAGTGCAC
1 CATTAGATAAACCAAAGCAAATAAATTGACACATAAGTGCAC
* * *
97665702 CATTGGATAAACCAAAGCAAATACATTGTCACATAAGTGCA
1 CATTAGATAAACCAAAGCAAATAAATTGACACATAAGTGCA
97665743 TTATCGGCTA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.46, C:0.18, G:0.14, T:0.22
Consensus pattern (42 bp):
CATTAGATAAACCAAAGCAAATAAATTGACACATAAGTGCAC
Found at i:97670077 original size:14 final size:14
Alignment explanation
Indices: 97670058--97670101 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
97670048 CTTAAACTCT
97670058 AACCCTAACCCATA
1 AACCCTAACCCATA
**
97670072 AACCCTAAATCATA
1 AACCCTAACCCATA
*
97670086 ATCCCTAAACCCATA
1 AACCCT-AACCCATA
97670101 A
1 A
97670102 TTCATCATAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
14 17 0.71
15 7 0.29
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (14 bp):
AACCCTAACCCATA
Found at i:97670176 original size:46 final size:46
Alignment explanation
Indices: 97670107--97670217 Score: 161
Period size: 46 Copynumber: 2.4 Consensus size: 46
97670097 CATAATTCAT
*
97670107 CATAAACCTTCAAA-TACTAGTTAACTCATAAACCTTAAACCCTAAAC
1 CATAAACCAT-AAACTA-TAGTTAACTCATAAACCTTAAACCCTAAAC
* * *
97670154 CATATATCTTAAACTATAGTTAACTCATAAACCTTAAACCCTAAAC
1 CATAAACCATAAACTATAGTTAACTCATAAACCTTAAACCCTAAAC
97670200 CATAAACCATAAACTATA
1 CATAAACCATAAACTATA
97670218 ATGATAATTA
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
46 48 0.83
47 10 0.17
ACGTcount: A:0.46, C:0.25, G:0.02, T:0.27
Consensus pattern (46 bp):
CATAAACCATAAACTATAGTTAACTCATAAACCTTAAACCCTAAAC
Found at i:97670193 original size:7 final size:7
Alignment explanation
Indices: 97670179--97670218 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
97670169 ATAGTTAACT
97670179 CATAAAC
1 CATAAAC
*
97670186 CTTAAAC
1 CATAAAC
*
97670193 CCTAAAC
1 CATAAAC
97670200 CATAAAC
1 CATAAAC
97670207 CATAAAC
1 CATAAAC
*
97670214 TATAA
1 CATAA
97670219 TGATAATTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.20
Consensus pattern (7 bp):
CATAAAC
Found at i:97670511 original size:40 final size:40
Alignment explanation
Indices: 97670375--97670541 Score: 142
Period size: 40 Copynumber: 4.1 Consensus size: 40
97670365 GTTATATGAC
* * * *
97670375 TTTTAGTGGCGTTTTT-CCAAAAGCGTCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTGCTAAAA-CGCCGCTAATGCTCT-GT
*
97670416 TTTTAGCGGCG-TTTTGCAAAAAAGCGCCGCTAATGCTCT-T
1 TTTTAGCGGCGTTTTTGC-TAAAA-CGCCGCTAATGCTCTGT
* * * * *
97670456 TTTTTGCGGCATTTTTACTAAAACGCTGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTTGCTAAAACGCCGCTAATGCTCTGT
* * * *
97670496 TTTTAGTGGCGTTTTTGGTAAAACGCCGCTATTGCTATGT
1 TTTTAGCGGCGTTTTTGCTAAAACGCCGCTAATGCTCTGT
97670536 GTTTTA
1 -TTTTA
97670542 TAATTTTTGC
Statistics
Matches: 104, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
39 13 0.12
40 52 0.50
41 21 0.20
42 18 0.17
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.41
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTTGCTAAAACGCCGCTAATGCTCTGT
Found at i:97679886 original size:17 final size:17
Alignment explanation
Indices: 97679864--97679899 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
97679854 ATTATTTAAT
97679864 AATATTTTTATT-TCTAA
1 AATATTTTT-TTATCTAA
97679881 AATATTTTTTTATCTAA
1 AATATTTTTTTATCTAA
97679898 AA
1 AA
97679900 AAATGATTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 16 0.89
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
AATATTTTTTTATCTAA
Found at i:97691718 original size:18 final size:18
Alignment explanation
Indices: 97691672--97691715 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
97691662 TAGGTTCTAA
*
97691672 AAAATAAA-AATAAAAAT
1 AAAATAAATAACAAAAAT
97691689 AAAATGAAATAACAAAAAT
1 AAAAT-AAATAACAAAAAT
97691708 AAAGATAA
1 AAA-ATAA
97691716 TAAACCTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 13 0.57
20 2 0.09
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (18 bp):
AAAATAAATAACAAAAAT
Found at i:97692627 original size:44 final size:44
Alignment explanation
Indices: 97692495--97692825 Score: 213
Period size: 44 Copynumber: 7.5 Consensus size: 44
97692485 TTCAGCCTGC
* * * * *
97692495 TACCCTATTGCTTAGGGGTTTAAGGCCTATCACCTTCGATATAT
1 TACCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGATCTGT
* * ** * * ** *
97692539 TTCCCTACTGCTTAGGGGGATAA-GATCTTGTAAATTC-AGCCTGT
1 TACCCTACTGCTTAGGGGGTTAAGGCCCAT-CACCTTCGA-TCTGT
* *
97692583 TA-CCTCACTACTTAGGGGTTTAAGGCCCATCACCTTCGATCTGT
1 TACCCT-ACTGCTTAGGGGGTTAAGGCCCATCACCTTCGATCTGT
* ** ** * ** * *
97692627 TTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAG-CCTGT
1 TACCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGATCTGT
* *
97692670 TACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTAT
1 TACCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGATCTGT
* * ** * * ** *
97692714 TTCCCTACTACTTAGGGGGTTAA-GATCTTGTAAATTCAATCTGT
1 TACCCTACTGCTTAGGGGGTTAAGGCCCAT-CACCTTCGATCTGT
* * **
97692758 TACCCTACTGCTTAGGGGTTTAAGGTCCATTGCCTTCGATCTGT
1 TACCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGATCTGT
*
97692802 TTCCCTACTGCTTAGGGGGTTAAG
1 TACCCTACTGCTTAGGGGGTTAAG
97692826 ATCTTGTAAA
Statistics
Matches: 206, Mismatches: 72, Indels: 18
0.70 0.24 0.06
Matches are distributed among these distances:
43 41 0.20
44 155 0.75
45 10 0.05
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (44 bp):
TACCCTACTGCTTAGGGGGTTAAGGCCCATCACCTTCGATCTGT
Found at i:97692634 original size:88 final size:88
Alignment explanation
Indices: 97692485--97692844 Score: 553
Period size: 88 Copynumber: 4.1 Consensus size: 88
97692475 ATCTATAATT
* * * *
97692485 TTCAGCCTGCTACCCTATTGCTTAGGGGTTTAAGGCCTATCACCTTCGATATATTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTATTTCCCTACTGC
*
97692550 TTAGGGGGATAAGATCTTGTAAA
66 TTAGGGGGTTAAGATCTTGTAAA
* *
97692573 TTCAGCCTGTTA-CCTCACTACTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTG
1 TTCAGCCTGTTACCCT-ACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTATTTCCCTACTG
97692637 CTTAGGGGGTTAAGATC-TGTAAA
65 CTTAGGGGGTTAAGATCTTGTAAA
* *
97692660 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTATTTCCCTACTAC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTATTTCCCTACTGC
97692725 TTAGGGGGTTAAGATCTTGTAAA
66 TTAGGGGGTTAAGATCTTGTAAA
** * ** *
97692748 TTCAATCTGTTACCCTACTGCTTAGGGGTTTAAGGTCCATTGCCTTCGATCTGTTTCCCTACTGC
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTATTTCCCTACTGC
97692813 TTAGGGGGTTAAGATCTTGTAAA
66 TTAGGGGGTTAAGATCTTGTAAA
*
97692836 TTTAGCCTG
1 TTCAGCCTG
97692845 CTCCACTGCG
Statistics
Matches: 247, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
87 82 0.33
88 165 0.67
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (88 bp):
TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTATTTCCCTACTGC
TTAGGGGGTTAAGATCTTGTAAA
Found at i:97692796 original size:175 final size:176
Alignment explanation
Indices: 97692488--97692846 Score: 587
Period size: 175 Copynumber: 2.0 Consensus size: 176
97692478 TATAATTTTC
* * *
97692488 AGCCTGCTACCCTATTGCTTAGGGGTTTAAGGCCTATCACCTTCGATATATTTCCCTACTGCTTA
1 AGCCTGCTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATATATTTCCCTACTACTTA
*
97692553 GGGGGATAAGATCTTGTAAATTCAGCCTGTTACCTCACTACTTAGGGGTTTAAGGCCCATCACCT
66 GGGGGATAAGATCTTGTAAATTCAACCTGTTACCTCACTACTTAGGGGTTTAAGGCCCATCACCT
97692618 TCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATC-TGTAAATTT
131 TCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTGTAAATTT
* *
97692663 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTATTTCCCTACTACTTA
1 AGCCTGCTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATATATTTCCCTACTACTTA
* * * * **
97692728 GGGGGTTAAGATCTTGTAAATTCAATCTGTTACC-CTACTGCTTAGGGGTTTAAGGTCCATTGCC
66 GGGGGATAAGATCTTGTAAATTCAACCTGTTACCTC-ACTACTTAGGGGTTTAAGGCCCATCACC
97692792 TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTGTAAATTT
130 TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTGTAAATTT
97692839 AGCCTGCT
1 AGCCTGCT
97692847 CCACTGCGAT
Statistics
Matches: 169, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
174 1 0.01
175 152 0.90
176 16 0.09
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (176 bp):
AGCCTGCTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATATATTTCCCTACTACTTA
GGGGGATAAGATCTTGTAAATTCAACCTGTTACCTCACTACTTAGGGGTTTAAGGCCCATCACCT
TCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTGTAAATTT
Found at i:97692878 original size:44 final size:43
Alignment explanation
Indices: 97692828--97692910 Score: 112
Period size: 44 Copynumber: 1.9 Consensus size: 43
97692818 GGGTTAAGAT
* *
97692828 CTTGTAAATTTAGCCTGCTCCACTGCGATTTCAAGGAGATGAGA
1 CTTGTAAATTCAGCCTGCTCCACTGC-ACTTCAAGGAGATGAGA
* * *
97692872 CTTGTAACTTCAGTCTGCTCCACTGCACTTCAGGGAGAT
1 CTTGTAAATTCAGCCTGCTCCACTGCACTTCAAGGAGAT
97692911 AAGGCTAGTG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
43 11 0.32
44 23 0.68
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (43 bp):
CTTGTAAATTCAGCCTGCTCCACTGCACTTCAAGGAGATGAGA
Found at i:97692925 original size:43 final size:44
Alignment explanation
Indices: 97692842--97692933 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 44
97692832 TAAATTTAGC
* * * *
97692842 CTGCTCCACTGCGATTTCAAGGAGATGAGACTTGTAACTTCAGT
1 CTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTCACT
* * *
97692886 CTGCTCCACTGC-ACTTCAGGGAGATAAGGCTAGTGACTTCACT
1 CTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTCACT
97692929 CTGCT
1 CTGCT
97692934 TCGCTGAGGC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 29 0.71
44 12 0.29
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (44 bp):
CTGCTCCACTGCGACTTCAAGGAGATAAGACTAGTAACTTCACT
Found at i:97698539 original size:63 final size:63
Alignment explanation
Indices: 97698440--97698565 Score: 243
Period size: 63 Copynumber: 2.0 Consensus size: 63
97698430 AACTATCCAT
97698440 TGGCAACCTATTCAGAGTAGATAGGGGTAGGACATTCAGCGCAGACCCATTGTCGATCAATAC
1 TGGCAACCTATTCAGAGTAGATAGGGGTAGGACATTCAGCGCAGACCCATTGTCGATCAATAC
*
97698503 TGGCAACCTATTCAGCGTAGATAGGGGTAGGACATTCAGCGCAGACCCATTGTCGATCAATAC
1 TGGCAACCTATTCAGAGTAGATAGGGGTAGGACATTCAGCGCAGACCCATTGTCGATCAATAC
97698566 CCCTGGTAAT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.22
Consensus pattern (63 bp):
TGGCAACCTATTCAGAGTAGATAGGGGTAGGACATTCAGCGCAGACCCATTGTCGATCAATAC
Found at i:97708660 original size:17 final size:16
Alignment explanation
Indices: 97708638--97708670 Score: 57
Period size: 16 Copynumber: 2.0 Consensus size: 16
97708628 TGAATTAACA
97708638 ACTTTTTAGATTATTTT
1 ACTTTTTA-ATTATTTT
97708655 ACTTTTTAATTATTTT
1 ACTTTTTAATTATTTT
97708671 GATTTGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.24, C:0.06, G:0.03, T:0.67
Consensus pattern (16 bp):
ACTTTTTAATTATTTT
Found at i:97710631 original size:58 final size:60
Alignment explanation
Indices: 97710526--97710670 Score: 161
Period size: 58 Copynumber: 2.4 Consensus size: 60
97710516 ATATTTTTAA
* * ** * ** *
97710526 ATAAGTTTT-TTGAAATTTTTAGAATTAGAGTTAAATTGAAAAATTTTGTAAATGTTGAGGG
1 ATAA-TTTTATTGAATTTTTTAG-ATTTGAACTAAAATGAAAAATTTTGTAAACATTAAGGG
*
97710587 ATAATTTTATTG-ATTTTTTA-ATTTGAACTAAAATGACAAATTTTGTAAACATTAAGGG
1 ATAATTTTATTGAATTTTTTAGATTTGAACTAAAATGAAAAATTTTGTAAACATTAAGGG
*
97710645 CTAATTTTATTGAATTTTTTAGATTT
1 ATAATTTTATTGAATTTTTTAGATTT
97710671 AGGATCAAAC
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
58 41 0.58
59 8 0.11
60 15 0.21
61 7 0.10
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (60 bp):
ATAATTTTATTGAATTTTTTAGATTTGAACTAAAATGAAAAATTTTGTAAACATTAAGGG
Found at i:97712938 original size:29 final size:29
Alignment explanation
Indices: 97712896--97712956 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
97712886 AAGTTAGGGC
* *
97712896 ATAATTCCTTGAATTTCCTAAAACGCGAA
1 ATAATTCCTCGAATTTCCTAAAACGCAAA
97712925 ATAATTCCTCGAATTTCCTAAAACGCAAA
1 ATAATTCCTCGAATTTCCTAAAACGCAAA
97712954 ATA
1 ATA
97712957 TTGCATTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (29 bp):
ATAATTCCTCGAATTTCCTAAAACGCAAA
Found at i:97713305 original size:22 final size:22
Alignment explanation
Indices: 97713261--97713318 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
97713251 CAAGAGAACG
*
97713261 AAATAAATAACATAAAACCATTTA
1 AAATAAAT-A-ATAAAACAATTTA
* *
97713285 AAATAAATAATGAAACAATTTT
1 AAATAAATAATAAAACAATTTA
*
97713307 AAATAAGTAATA
1 AAATAAATAATA
97713319 CATAAAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 20 0.69
23 1 0.03
24 8 0.28
ACGTcount: A:0.62, C:0.07, G:0.03, T:0.28
Consensus pattern (22 bp):
AAATAAATAATAAAACAATTTA
Found at i:97713421 original size:21 final size:21
Alignment explanation
Indices: 97713397--97713438 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
97713387 TAATTAATAC
*
97713397 ATAAAGTAAT-TTAAAAATAAA
1 ATAAAGCAATCTT-AAAATAAA
*
97713418 ATAATGCAATCTTAAAATAAA
1 ATAAAGCAATCTTAAAATAAA
97713439 TAATATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (21 bp):
ATAAAGCAATCTTAAAATAAA
Found at i:97713535 original size:13 final size:13
Alignment explanation
Indices: 97713495--97713546 Score: 50
Period size: 15 Copynumber: 3.7 Consensus size: 13
97713485 ATAACACGTG
*
97713495 AAAAACAAATTTAA
1 AAAAAC-AATATAA
*
97713509 AATAAATAATATATA
1 AA-AAACAATATA-A
97713524 TAAAAACAATATAA
1 -AAAAACAATATAA
97713538 AAAAACAAT
1 AAAAACAAT
97713547 TTAATATAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
13 9 0.28
14 8 0.25
15 13 0.41
16 2 0.06
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAAACAATATAA
Found at i:97713553 original size:29 final size:30
Alignment explanation
Indices: 97713495--97713555 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
97713485 ATAACACGTG
* *
97713495 AAAAACAAATTTAAAATAAATAATATATAT
1 AAAAACAAATATAAAATAAACAATATATAT
*
97713525 AAAAAC-AATATAAAA-AAACAATTTAATAT
1 AAAAACAAATATAAAATAAACAATAT-ATAT
97713554 AA
1 AA
97713556 GTAATGTATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 7 0.26
29 14 0.52
30 6 0.22
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (30 bp):
AAAAACAAATATAAAATAAACAATATATAT
Found at i:97713894 original size:25 final size:23
Alignment explanation
Indices: 97713841--97713894 Score: 54
Period size: 25 Copynumber: 2.2 Consensus size: 23
97713831 GATTTTAAAA
*
97713841 TAAATAATATAAGAAAACAAACT
1 TAAATAATATAAGAAAACAAACC
* *
97713864 TAAAATAATAATAATAAAACAATTCC
1 T-AAATAAT-ATAAGAAAACAA-ACC
97713890 TAAAT
1 TAAAT
97713895 TTTTTTTTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 1 0.04
24 7 0.28
25 15 0.60
26 2 0.08
ACGTcount: A:0.63, C:0.09, G:0.02, T:0.26
Consensus pattern (23 bp):
TAAATAATATAAGAAAACAAACC
Found at i:97715370 original size:10 final size:10
Alignment explanation
Indices: 97715345--97715392 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
97715335 GTATTAGTTA
*
97715345 AAATATATAT
1 AAATTTATAT
* *
97715355 ATATTTTTAT
1 AAATTTATAT
97715365 AAATTTATAT
1 AAATTTATAT
*
97715375 AAATTTAAAT
1 AAATTTATAT
97715385 AAATTTAT
1 AAATTTAT
97715393 TTTATTTTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
AAATTTATAT
Found at i:97716026 original size:17 final size:18
Alignment explanation
Indices: 97715998--97716031 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
97715988 AAGATAATAA
*
97715998 AAAATATAATTTTTAATG
1 AAAATATAATTTATAATG
97716016 AAAAT-TAATTTATAAT
1 AAAATATAATTTATAAT
97716032 TAAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (18 bp):
AAAATATAATTTATAATG
Found at i:97716077 original size:12 final size:12
Alignment explanation
Indices: 97716060--97716104 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
97716050 TTTATATTTT
97716060 TATTTTAATAAA
1 TATTTTAATAAA
*
97716072 TATTTTTATAGAA
1 TATTTTAATA-AA
*
97716085 TATTTTAATAAT
1 TATTTTAATAAA
97716097 TATTTTAA
1 TATTTTAA
97716105 AGTAAGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 18 0.62
13 11 0.38
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (12 bp):
TATTTTAATAAA
Found at i:97716078 original size:13 final size:13
Alignment explanation
Indices: 97716062--97716102 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
97716052 TATATTTTTA
97716062 TTTTAATAAATAT
1 TTTTAATAAATAT
97716075 TTTT-ATAGAATA-
1 TTTTAATA-AATAT
*
97716087 TTTTAATAATTAT
1 TTTTAATAAATAT
97716100 TTT
1 TTT
97716103 AAAGTAAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
12 10 0.42
13 14 0.58
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (13 bp):
TTTTAATAAATAT
Done.