Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 30 of 325
Found at i:9021670 original size:3 final size:3
Alignment explanation
Indices: 9021655--9021803 Score: 110
Period size: 3 Copynumber: 49.7 Consensus size: 3
9021645 TTTTATTTTT
* * *
9021655 TTA TT- TTA CTA TTA TT- TATA TTTA TTA TTA TTA TTA TTA CTA TCA
1 TTA TTA TTA TTA TTA TTA T-TA -TTA TTA TTA TTA TTA TTA TTA TTA
* * ** * *
9021700 TTA TTA TTT TTA CTA TTA CAA TTA TTT TCTA TAA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
* *
9021746 TCT- TTA TTA TTA TTA TTA TTA TTA TT- TTCA TTA -TA GTA CTA TTA
1 T-TA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA
*
9021790 TTA TTA CTA TTA TT
1 TTA TTA TTA TTA TT
9021804 TTTGTTATCC
Statistics
Matches: 114, Mismatches: 22, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
2 8 0.07
3 98 0.86
4 7 0.06
5 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:9022354 original size:125 final size:126
Alignment explanation
Indices: 9022173--9022404 Score: 286
Period size: 125 Copynumber: 1.8 Consensus size: 126
9022163 ATTTTTTCCC
* * * * *
9022173 AAAATAGATGTAATATTTCGTGTTTGGAAGTTCGAGAAATCGTGCCCTACCGTGCTGAATTTCGA
1 AAAATAGATGCAATATTTCGTATTTGGAAATTCGAGAAATCGTGCCCAACCATGCTGAATTTCGA
** * * * * *
9022238 TTTTTCGTTTGATCGAATAACTAAATATCCTTTTGAAATTTCGTCCATGTTTTCTTAAATT
66 TTTACCGTATGACCAAATAACCAAATATCCTTTTAAAATTTCGTCCATGTTTTCTTAAATT
* ** ** *
9022299 AAAAT-GATGCAATATTTCGTATTTGGAAATTCGATAAATCGTGCCCAATTATGCTGGGTTTTGA
1 AAAATAGATGCAATATTTCGTATTTGGAAATTCGAGAAATCGTGCCCAACCATGCTGAATTTCGA
*
9022363 TTTACCGTATGACCAAATAGCCAAATATCCTTTTAAAATTTC
66 TTTACCGTATGACCAAATAACCAAATATCCTTTTAAAATTTC
9022405 CAATGCATGA
Statistics
Matches: 87, Mismatches: 19, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
125 82 0.94
126 5 0.06
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (126 bp):
AAAATAGATGCAATATTTCGTATTTGGAAATTCGAGAAATCGTGCCCAACCATGCTGAATTTCGA
TTTACCGTATGACCAAATAACCAAATATCCTTTTAAAATTTCGTCCATGTTTTCTTAAATT
Found at i:9023172 original size:30 final size:30
Alignment explanation
Indices: 9023138--9023202 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
9023128 ACTTATTTTA
9023138 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
9023168 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
9023198 TTGTT
1 TTGTT
9023203 TGTTAAGTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:9024682 original size:36 final size:35
Alignment explanation
Indices: 9024610--9024683 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 35
9024600 TTTATATTTT
9024610 ATTAAATTATATTTAGTAATAATTATATTAAAAATA
1 ATTAAATTATATTTAGTAAT-ATTATATTAAAAATA
* * *
9024646 ATTAAATTATTTATTATTAAT-TTATATTTAATAATA
1 ATTAAATTATAT-TTAGTAATATTATA-TTAAAAATA
9024682 AT
1 AT
9024684 CCTATTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
35 5 0.15
36 21 0.64
37 7 0.21
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (35 bp):
ATTAAATTATATTTAGTAATATTATATTAAAAATA
Found at i:9025079 original size:29 final size:29
Alignment explanation
Indices: 9025046--9025115 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 29
9025036 TTAGTCATGT
9025046 TATTT-GTTTGGTTTAAAAATTAAAATCTA
1 TATTTGGTTT-GTTTAAAAATTAAAATCTA
*
9025075 TATTTTGGTTTTTTTAAAAATTAAAATCTA
1 TA-TTTGGTTTGTTTAAAAATTAAAATCTA
9025105 TATTTTGGTTT
1 TA-TTTGGTTT
9025116 TTTTTGTATT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
29 2 0.05
30 32 0.84
31 4 0.11
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.54
Consensus pattern (29 bp):
TATTTGGTTTGTTTAAAAATTAAAATCTA
Found at i:9025117 original size:29 final size:30
Alignment explanation
Indices: 9025057--9025119 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
9025047 ATTTGTTTGG
9025057 TTTAAAAATTAAAATCTATATTTTGGTTTT
1 TTTAAAAATTAAAATCTATATTTTGGTTTT
9025087 TTTAAAAATTAAAATCTATATTTTGGTTTT
1 TTTAAAAATTAAAATCTATATTTTGGTTTT
9025117 TTT
1 TTT
9025120 TGTATTACTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (30 bp):
TTTAAAAATTAAAATCTATATTTTGGTTTT
Found at i:9025509 original size:26 final size:26
Alignment explanation
Indices: 9025472--9025555 Score: 159
Period size: 26 Copynumber: 3.2 Consensus size: 26
9025462 TGATACAAAT
*
9025472 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9025498 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9025524 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9025550 TGATAA
1 TGATAA
9025556 GAATTTCATG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.33, C:0.04, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:9028842 original size:5 final size:5
Alignment explanation
Indices: 9028834--9028867 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
9028824 GTGAAAATAA
*
9028834 AAAAT AAAAT AAAAT AAAATT AAATT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAA-T AAAAT AAAAT AAA
9028868 GAACACACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (5 bp):
AAAAT
Found at i:9028857 original size:16 final size:16
Alignment explanation
Indices: 9028827--9028867 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
9028817 AGCTGTTGTG
9028827 AAAATAAAAAATAAAAT
1 AAAAT-AAAAATAAAAT
* *
9028844 AAAATAAAATTAAATT
1 AAAATAAAAATAAAAT
9028860 AAAATAAA
1 AAAATAAA
9028868 GAACACACAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAATAAAAATAAAAT
Found at i:9029060 original size:24 final size:24
Alignment explanation
Indices: 9029016--9029067 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
9029006 AATCAAGGTC
*
9029016 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATACT
*
9029040 AAATATATTATGCTCATAAATACT
1 AAATATATTATGCTAATAAATACT
9029064 AAAT
1 AAAT
9029068 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATACT
Found at i:9033247 original size:5 final size:5
Alignment explanation
Indices: 9033231--9033273 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
9033221 CCAATTTTTG
*
9033231 AAAAT -AAA- AAAAT AAAAT AAAAT AAAATT AAATT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T AAAAT AAAAT AAAA
9033274 AACACACAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
4 6 0.18
5 23 0.70
6 4 0.12
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:9033262 original size:16 final size:15
Alignment explanation
Indices: 9033231--9033273 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
9033221 CCAATTTTTG
9033231 AAAAT-AAA-AAAAT
1 AAAATAAAATAAAAT
9033244 AAAATAAAATAAAATT
1 AAAATAAAATAAAA-T
*
9033260 AAATTAAAATAAAA
1 AAAATAAAATAAAA
9033274 AACACACAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 5 0.19
14 3 0.12
15 4 0.15
16 14 0.54
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAATAAAATAAAAT
Found at i:9033448 original size:24 final size:24
Alignment explanation
Indices: 9033421--9033472 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
9033411 AATTAAGGTC
* *
9033421 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
* *
9033445 AAATATATTGTACTCATAAATACT
1 AAATATATTATACTAATAAATACT
9033469 AAAT
1 AAAT
9033473 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:9037083 original size:22 final size:23
Alignment explanation
Indices: 9037063--9037105 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
9037053 AATTTATAAT
9037063 TTTTTATAATAAATTTAATAACA
1 TTTTTATAATAAATTTAATAACA
* *
9037086 TTTTTA-ATTTAATTTAATAA
1 TTTTTATAATAAATTTAATAA
9037106 ATTAATATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTTTATAATAAATTTAATAACA
Found at i:9039166 original size:46 final size:46
Alignment explanation
Indices: 9039099--9039273 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
9039089 TGTAACCCGC
*
9039099 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
9039145 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * *
9039195 CTC-T---TGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 C-CATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
9039238 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG
9039274 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
46 61 0.58
47 25 0.24
48 1 0.01
49 1 0.01
50 5 0.05
51 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:9039218 original size:93 final size:93
Alignment explanation
Indices: 9039106--9039278 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
9039096 CGCCCATAAG
* * *
9039106 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
9039171 ATGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
9039199 TGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
9039264 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
9039279 CAAATATCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:9039293 original size:46 final size:44
Alignment explanation
Indices: 9039104--9039293 Score: 100
Period size: 46 Copynumber: 4.1 Consensus size: 44
9039094 CCCGCCCATA
* * ** ** **
9039104 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCCAAATCC-T
* * *
9039149 AAGTGAACTCAGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * * *
9039199 --TGAACTCGGACTCAACTCAACGAGTTCAGACATTCGC--ATCCAT
1 AGTGAACTCAGACTCAACTCAACGAGTTC-G-GATGCCCAAATCC-T
9039242 AAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
9039289 AGTGA
1 AGTGA
9039294 CATGTCACTT
Statistics
Matches: 109, Mismatches: 20, Indels: 30
0.69 0.13 0.19
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 4 0.04
45 1 0.01
46 61 0.56
47 25 0.23
48 5 0.05
49 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (44 bp):
AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:9042463 original size:52 final size:52
Alignment explanation
Indices: 9042404--9042505 Score: 204
Period size: 52 Copynumber: 2.0 Consensus size: 52
9042394 GGCTTTGGGT
9042404 TGTTGGGTTAGTATTTGGATTTGGGTCATTGGGCTTGTAAATTGACCGAAGC
1 TGTTGGGTTAGTATTTGGATTTGGGTCATTGGGCTTGTAAATTGACCGAAGC
9042456 TGTTGGGTTAGTATTTGGATTTGGGTCATTGGGCTTGTAAATTGACCGAA
1 TGTTGGGTTAGTATTTGGATTTGGGTCATTGGGCTTGTAAATTGACCGAA
9042506 CTTTTATTTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.20, C:0.09, G:0.32, T:0.39
Consensus pattern (52 bp):
TGTTGGGTTAGTATTTGGATTTGGGTCATTGGGCTTGTAAATTGACCGAAGC
Found at i:9043421 original size:186 final size:185
Alignment explanation
Indices: 9043100--9043608 Score: 596
Period size: 186 Copynumber: 2.7 Consensus size: 185
9043090 GATACAAGAT
* * ** * *
9043100 TTGTAGCTTTATCTTGCTCTACTGCAACTCCAGGGAGATAAGATTTTCTATTGTAGCTTCATTCC
1 TTGTAGCTTTATCTTGCCCCACTGCAACTTAAGGGAGATAAGATTTGCTATTGTAGCTTTATTCC
** * * *
9043165 AACCCACTGCAACTTTAGGAGG-ACT-GGATCCGTAACTTCATCTTGCTCCACTGCAATTTTAGG
66 AACCCACTGCAACTTTAGG-GGTA-TAGGATTTGTAGCTTCATCTTACTCCACTGCAACTTTA-G
* * *
9043228 GAGATAAGATCACTACTTTA-TCAGTTTCACTGCAATTTTAAGAAAATCAAATTTAATG
128 GAGATAAGATCACTACTTTATTC-GTTTCACTGCAACTTCAAGAAAACCAAATTTAATG
* *
9043286 TTGTAGCTTTATCTTGCCCCACTACAACTTAAGGGAGATAAGATTCGCTATTGTAGCTTTATTCC
1 TTGTAGCTTTATCTTGCCCCACTGCAACTTAAGGGAGATAAGATTTGCTATTGTAGCTTTATTCC
* *
9043351 AACCCACTGCAGCTTTAGGGGTATAGGATTTGTAGCTTCATCTTACTCCACTACAACTTTAGGTA
66 AACCCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACTCCACTGCAACTTTAGG-A
*** * * * *
9043416 GATAAGATTGTTGCTTTATTCGTTTTATTGCAACTTCAAGAAAACCAGATTTAATG
130 GATAAGATCACTACTTTATTCGTTTCACTGCAACTTCAAGAAAACCAAATTTAATG
* * * * *
9043472 TTGTAGCTTTATCTTGCCCCATTGCATCTTCAA-GGAGATGAGATTTGCTACTGTAG-TTTCAAT
1 TTGTAGCTTTATCTTGCCCCACTGCAACTT-AAGGGAGATAAGATTTGCTATTGTAGCTTT-ATT
** * * *
9043535 CCATTCCACTACAACTTTAGGGATATAGGATTTGTAGCTTCGTCTTACTCCACTGCAACTTTAGA
64 CCAACCCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACTCCACTGCAACTTTAG-
9043600 GAGATAAGA
128 GAGATAAGA
9043609 CTCGTCATTG
Statistics
Matches: 277, Mismatches: 39, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
185 8 0.03
186 264 0.95
187 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (185 bp):
TTGTAGCTTTATCTTGCCCCACTGCAACTTAAGGGAGATAAGATTTGCTATTGTAGCTTTATTCC
AACCCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACTCCACTGCAACTTTAGGAG
ATAAGATCACTACTTTATTCGTTTCACTGCAACTTCAAGAAAACCAAATTTAATG
Found at i:9058465 original size:30 final size:30
Alignment explanation
Indices: 9058430--9058494 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
9058420 TGGAAAAAAA
9058430 CTCTCAAATTTCTCCCTAAATTTCTCAAAC
1 CTCTCAAATTTCTCCCTAAATTTCTCAAAC
* *
9058460 CTCTCAAATTTCTCCTTAAATTTCTCAAAG
1 CTCTCAAATTTCTCCCTAAATTTCTCAAAC
9058490 CTCTC
1 CTCTC
9058495 TTTAATTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.28, C:0.32, G:0.02, T:0.38
Consensus pattern (30 bp):
CTCTCAAATTTCTCCCTAAATTTCTCAAAC
Found at i:9065856 original size:7 final size:7
Alignment explanation
Indices: 9065844--9065868 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9065834 AGTAGTCTCA
9065844 TATTTAG
1 TATTTAG
9065851 TATTTAG
1 TATTTAG
9065858 TATTTAG
1 TATTTAG
9065865 TATT
1 TATT
9065869 ATTTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:9066479 original size:18 final size:18
Alignment explanation
Indices: 9066456--9066493 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
9066446 ATCTAGGTGC
*
9066456 GTATCCTAGCTCTTATAT
1 GTATCCTAACTCTTATAT
9066474 GTATCCTAACTCTTATAT
1 GTATCCTAACTCTTATAT
9066492 GT
1 GT
9066494 TTCGTTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.21, G:0.11, T:0.45
Consensus pattern (18 bp):
GTATCCTAACTCTTATAT
Found at i:9068915 original size:29 final size:30
Alignment explanation
Indices: 9068864--9068976 Score: 112
Period size: 29 Copynumber: 4.0 Consensus size: 30
9068854 CATACATGTA
* * *
9068864 GCCCA-CTAGGCCTAA-TCTTATTCAAATG
1 GCCCATCTAGGCCCAATTCATATTCATATG
* * *
9068892 GCCCATCTA-GCCTAGTTCATATTCTTATG
1 GCCCATCTAGGCCCAATTCATATTCATATG
*
9068921 GCCCA-CTAGGCCCAATTCACATTCATATG
1 GCCCATCTAGGCCCAATTCATATTCATATG
*
9068950 GCCCAT-TAGGCCCAAATCATATT-ATAT
1 GCCCATCTAGGCCCAATTCATATTCATAT
9068977 TCACGCTCAC
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
28 17 0.24
29 54 0.76
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.30
Consensus pattern (30 bp):
GCCCATCTAGGCCCAATTCATATTCATATG
Found at i:9068970 original size:58 final size:57
Alignment explanation
Indices: 9068864--9068972 Score: 130
Period size: 58 Copynumber: 1.9 Consensus size: 57
9068854 CATACATGTA
* ** * **
9068864 GCCCACTAGGCCTAATCTTATTCAAATGGCCCATCTAGCCTAGTTCATATTCTTATG
1 GCCCACTAGGCCCAATCACATTCAAATGGCCCATCTAGCCCAAATCATATTCTTATG
*
9068921 GCCCACTAGGCCCAATTCACATTCATATGGCCCAT-TAGGCCCAAATCATATT
1 GCCCACTAGGCCCAA-TCACATTCAAATGGCCCATCTA-GCCCAAATCATATT
9068973 ATATTCACGC
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
57 16 0.37
58 27 0.63
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (57 bp):
GCCCACTAGGCCCAATCACATTCAAATGGCCCATCTAGCCCAAATCATATTCTTATG
Found at i:9072703 original size:124 final size:126
Alignment explanation
Indices: 9072458--9072849 Score: 526
Period size: 125 Copynumber: 3.1 Consensus size: 126
9072448 GGCCAAACAT
* * *
9072458 GAACTACTGTAGAAAAAGAGCG-TCGACGTAGGAGCTTTTTTCA-TCAATTTTGCTGATAGTACA
1 GAACTACTGTAGAAAAAGAGCGTTC-ACGTGGGAGCTTTTTTCAGT-AATTTTGCTGACAGTGCA
*
9072521 TCCTGCTTGAAGCGTTTTTGACACTATTT-TTCAGAACTA-TCTTCTCAAAATTATTTTTT-AG
64 TCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAA-AAGTCTTCTCAAAATTATTTTTTCAG
* *
9072582 GAACTAATGTAGAAAAAGAACGTTCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
*
9072647 CTGCTTGAAGCGTTTTTGACACTATTTGTTTAGAAAAGTCTTCTCAAAATTA-TTTTTCAG
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAAAGTCTTCTCAAAATTATTTTTTCAG
* * *** * * *
9072707 GAACTATTGTAGAAAAAGAGCGTCCTTATGGGATCTTTTTTCAGTAATTTTGATGGCAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* ** * * *
9072772 CTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAACTGTATTCTCCAAACTATTTTTTCAG
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAAAGTCTTCTCAAAATTATTTTTTCAG
9072833 GAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
9072850 AACAAAATCC
Statistics
Matches: 238, Mismatches: 24, Indels: 10
0.88 0.09 0.04
Matches are distributed among these distances:
124 88 0.37
125 126 0.53
126 24 0.10
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCGTTCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAAAGTCTTCTCAAAATTATTTTTTCAG
Found at i:9073038 original size:15 final size:15
Alignment explanation
Indices: 9073018--9073056 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
9073008 TTATTTTAAC
* *
9073018 AAAACCCTAACCCTA
1 AAAACCCTAAACCAA
*
9073033 AAAACCATAAACCAA
1 AAAACCCTAAACCAA
9073048 AAAACCCTA
1 AAAACCCTA
9073057 GGGATTAAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.56, C:0.33, G:0.00, T:0.10
Consensus pattern (15 bp):
AAAACCCTAAACCAA
Found at i:9075036 original size:13 final size:13
Alignment explanation
Indices: 9075018--9075042 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9075008 GGTTTGTTTA
9075018 TTAAACTAATTAT
1 TTAAACTAATTAT
9075031 TTAAACTAATTA
1 TTAAACTAATTA
9075043 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:9077781 original size:5 final size:5
Alignment explanation
Indices: 9077771--9077838 Score: 54
Period size: 6 Copynumber: 13.4 Consensus size: 5
9077761 TATGTCTTGC
*
9077771 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT AAAAAT AAAA-
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAAT AAAAT
9077817 AAAAT AAAAAT AAAA- AAAAT AA
1 AAAAT -AAAAT AAAAT AAAAT AA
9077839 GACTAAATAA
Statistics
Matches: 53, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
3 3 0.06
4 8 0.15
5 18 0.34
6 24 0.45
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:9077845 original size:15 final size:15
Alignment explanation
Indices: 9077801--9077838 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
9077791 AAATGAAAAT
9077801 AAAAATAAAAATAAA
1 AAAAATAAAAATAAA
9077816 AAAAATAAAAATAAA
1 AAAAATAAAAATAAA
9077831 AAAAATAA
1 AAAAATAA
9077839 GACTAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (15 bp):
AAAAATAAAAATAAA
Found at i:9077846 original size:19 final size:16
Alignment explanation
Indices: 9077801--9077857 Score: 64
Period size: 15 Copynumber: 3.4 Consensus size: 16
9077791 AAATGAAAAT
9077801 AAAAAT-AAAAATAAA
1 AAAAATAAAAAATAAA
9077816 AAAAAT-AAAAATAAA
1 AAAAATAAAAAATAAA
9077831 AAAAATAAGACTAAATAAA
1 AAAAATAA-A--AAATAAA
9077850 CAAAAATA
1 -AAAAATA
9077858 GGAGGATTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
15 21 0.57
16 1 0.03
17 1 0.03
19 7 0.19
20 7 0.19
ACGTcount: A:0.81, C:0.04, G:0.02, T:0.14
Consensus pattern (16 bp):
AAAAATAAAAAATAAA
Found at i:9083146 original size:13 final size:13
Alignment explanation
Indices: 9083128--9083152 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9083118 GGTTTGTTTA
9083128 TTAAACTAATTAT
1 TTAAACTAATTAT
9083141 TTAAACTAATTA
1 TTAAACTAATTA
9083153 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:9094607 original size:19 final size:15
Alignment explanation
Indices: 9094558--9094612 Score: 85
Period size: 15 Copynumber: 3.7 Consensus size: 15
9094548 TATATATTAT
9094558 ATAA-TTCAATCAAA
1 ATAATTTCAATCAAA
9094572 ATAATTTCAATCAAA
1 ATAATTTCAATCAAA
*
9094587 ATAATTTCAATCAAT
1 ATAATTTCAATCAAA
*
9094602 ATAAATTCAAT
1 ATAATTTCAAT
9094613 AAATTCATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
14 4 0.11
15 34 0.89
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.35
Consensus pattern (15 bp):
ATAATTTCAATCAAA
Found at i:9095862 original size:21 final size:20
Alignment explanation
Indices: 9095838--9095877 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
9095828 TTGCTCTCTG
* *
9095838 TTTCGTTTCATTCTGTTTCTA
1 TTTCCTTTC-TTCTGCTTCTA
9095859 TTTCCTTTCTTCTGCTTCT
1 TTTCCTTTCTTCTGCTTCT
9095878 TTAGTTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.05, C:0.25, G:0.07, T:0.62
Consensus pattern (20 bp):
TTTCCTTTCTTCTGCTTCTA
Found at i:9095877 original size:20 final size:21
Alignment explanation
Indices: 9095829--9095877 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
9095819 TTTTCTCCCT
* *
9095829 TGCTCTCTGTTTCGTTTCATTC
1 TGCT-TCTATTTCCTTTCATTC
*
9095851 TGTTTCTATTTCCTTTC-TTC
1 TGCTTCTATTTCCTTTCATTC
9095871 TGCTTCT
1 TGCTTCT
9095878 TTAGTTTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 9 0.39
21 11 0.48
22 3 0.13
ACGTcount: A:0.04, C:0.27, G:0.10, T:0.59
Consensus pattern (21 bp):
TGCTTCTATTTCCTTTCATTC
Found at i:9095897 original size:5 final size:5
Alignment explanation
Indices: 9095884--9095915 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
9095874 TTCTTTAGTT
9095884 TATATA TATAA TATAA TATAA TATAA TATAA T
1 TATA-A TATAA TATAA TATAA TATAA TATAA T
9095916 TAAAACATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TATAA
Found at i:9095909 original size:15 final size:16
Alignment explanation
Indices: 9095884--9095966 Score: 63
Period size: 16 Copynumber: 5.5 Consensus size: 16
9095874 TTCTTTAGTT
9095884 TATATATATAATATAA
1 TATATATATAATATAA
9095900 TATA-ATATAATATAA
1 TATATATATAATATAA
*
9095915 T-TA-A-A-ACATAAAA
1 TATATATATA-ATATAA
* * *
9095928 TATCTTTATTATATAA
1 TATATATATAATATAA
9095944 TA-ATATAATAATATAA
1 TATATAT-ATAATATAA
9095960 TA-ATATA
1 TATATATA
9095967 CTAAACATAA
Statistics
Matches: 53, Mismatches: 8, Indels: 13
0.72 0.11 0.18
Matches are distributed among these distances:
12 1 0.02
13 7 0.13
14 4 0.08
15 15 0.28
16 26 0.49
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (16 bp):
TATATATATAATATAA
Found at i:9095951 original size:8 final size:8
Alignment explanation
Indices: 9095938--9095966 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
9095928 TATCTTTATT
9095938 ATATAATA
1 ATATAATA
9095946 ATATAATA
1 ATATAATA
9095954 ATATAATA
1 ATATAATA
9095962 ATATA
1 ATATA
9095967 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:9105464 original size:13 final size:14
Alignment explanation
Indices: 9105439--9105467 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
9105429 TATTTATATT
9105439 TATATATACATAAA
1 TATATATACATAAA
9105453 TATATA-ACATAAA
1 TATATATACATAAA
9105466 TA
1 TA
9105468 AAAAATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
TATATATACATAAA
Found at i:9105489 original size:18 final size:20
Alignment explanation
Indices: 9105450--9105490 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
9105440 ATATATACAT
*
9105450 AAATATATAACATAAATAAA
1 AAATATATAACAAAAATAAA
9105470 AAATATATAA-AAAAATAAA
1 AAATATATAACAAAAATAAA
9105489 AA
1 AA
9105491 GAAAATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (20 bp):
AAATATATAACAAAAATAAA
Found at i:9105495 original size:23 final size:22
Alignment explanation
Indices: 9105461--9105505 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
9105451 AATATATAAC
9105461 ATAAATAAAAAATATATAAAAAA
1 ATAAATAAAAAAT-TATAAAAAA
*
9105484 ATAAA-AAGAAAATTTTAAAAAA
1 ATAAATAA-AAAATTATAAAAAA
9105506 TTTACCTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (22 bp):
ATAAATAAAAAATTATAAAAAA
Found at i:9105996 original size:40 final size:40
Alignment explanation
Indices: 9105941--9106019 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
9105931 GTCCTCCTAA
*
9105941 GGTGTGCGCACGTTACATTTCGGTCCTTTTTCTTTGTTTG
1 GGTGTGCGCACGTTACATTTCGGTCCTTTTTCTCTGTTTG
9105981 GGTGTGCGCACGTTACATTTCGGTCCTTTTTCTCTGTTT
1 GGTGTGCGCACGTTACATTTCGGTCCTTTTTCTCTGTTT
9106020 CTTTTTTAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.08, C:0.22, G:0.24, T:0.47
Consensus pattern (40 bp):
GGTGTGCGCACGTTACATTTCGGTCCTTTTTCTCTGTTTG
Found at i:9106662 original size:3 final size:3
Alignment explanation
Indices: 9106654--9106726 Score: 121
Period size: 3 Copynumber: 24.3 Consensus size: 3
9106644 TATATTATCC
9106654 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
9106702 TTA TTA TTA -TA TTA TGTT TTA TTA T
1 TTA TTA TTA TTA TTA T-TA TTA TTA T
9106727 ATACGTAAAT
Statistics
Matches: 66, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
2 2 0.03
3 62 0.94
4 2 0.03
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:9106856 original size:21 final size:21
Alignment explanation
Indices: 9106831--9106871 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9106821 TGTTTATATA
* *
9106831 TTATATTTTTTCTTTTCACTT
1 TTATATTTATTATTTTCACTT
9106852 TTATATTTATTATTTTCACT
1 TTATATTTATTATTTTCACT
9106872 ATATTTATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.12, G:0.00, T:0.68
Consensus pattern (21 bp):
TTATATTTATTATTTTCACTT
Found at i:9107437 original size:22 final size:23
Alignment explanation
Indices: 9107384--9107437 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
9107374 TTATATATAG
*
9107384 TATTATTTTCATATATTTATACC
1 TATTATTTTCATACATTTATACC
* *
9107407 TATTCTTTTCAT-CA-TTATCACT
1 TATTATTTTCATACATTTAT-ACC
9107429 TATTATTTT
1 TATTATTTT
9107438 ATTTTAATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 4 0.15
22 11 0.42
23 11 0.42
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (23 bp):
TATTATTTTCATACATTTATACC
Found at i:9109049 original size:12 final size:11
Alignment explanation
Indices: 9109027--9109052 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
9109017 TAAATCACGA
9109027 TTTTATTTTTT
1 TTTTATTTTTT
9109038 TTTTATTTTTT
1 TTTTATTTTTT
9109049 TTTT
1 TTTT
9109053 GAAAATCGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTATTTTTT
Found at i:9111354 original size:24 final size:23
Alignment explanation
Indices: 9111327--9111373 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
9111317 TACTTTTTGT
*
9111327 TTTTATTATTCTAATCAATTTTAA
1 TTTTATTATTC-AATAAATTTTAA
* *
9111351 TTTTTTTCTTCAATAAATTTTAA
1 TTTTATTATTCAATAAATTTTAA
9111374 GAGTAATTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTTATTATTCAATAAATTTTAA
Found at i:9112248 original size:17 final size:17
Alignment explanation
Indices: 9112203--9112260 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
9112193 TTTAATGAAC
*
9112203 TTTTTA-AATATTTTTTA
1 TTTTTATAA-ATTTTTAA
* *
9112220 TTTTTTTTAATTTTTAA
1 TTTTTATAAATTTTTAA
*
9112237 TTTTTATAAATTTTGAA
1 TTTTTATAAATTTTTAA
9112254 TTATTTA
1 TT-TTTA
9112261 GTGATGTGAC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
17 28 0.85
18 5 0.15
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (17 bp):
TTTTTATAAATTTTTAA
Found at i:9116886 original size:23 final size:24
Alignment explanation
Indices: 9116854--9116900 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
9116844 TTTGAAATGC
* *
9116854 TTTATAATATATCTTTTTTAAAAT
1 TTTATAATATATATTTTTGAAAAT
9116878 TTTA-AATATATATTTTTGAAAAT
1 TTTATAATATATATTTTTGAAAAT
9116901 ATTTTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (24 bp):
TTTATAATATATATTTTTGAAAAT
Found at i:9116926 original size:34 final size:35
Alignment explanation
Indices: 9116867--9116948 Score: 112
Period size: 34 Copynumber: 2.4 Consensus size: 35
9116857 ATAATATATC
9116867 TTTTTTAAAATTTTAAATATATATTTTTGAAAATA
1 TTTTTTAAAATTTTAAATATATATTTTTGAAAATA
* * * *
9116902 TTTTTTAAACTTTTAAGTAT-TATTTTTTAAATTA
1 TTTTTTAAAATTTTAAATATATATTTTTGAAAATA
*
9116936 TTTTTAAAAATTT
1 TTTTTTAAAATTT
9116949 AGGGTTTAGG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
34 23 0.56
35 18 0.44
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.59
Consensus pattern (35 bp):
TTTTTTAAAATTTTAAATATATATTTTTGAAAATA
Found at i:9116964 original size:15 final size:15
Alignment explanation
Indices: 9116946--9116975 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9116936 TTTTTAAAAA
*
9116946 TTTAGGGTTTAGGGT
1 TTTAGGGTTGAGGGT
9116961 TTTAGGGTTGAGGGT
1 TTTAGGGTTGAGGGT
9116976 CAATATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.00, G:0.43, T:0.43
Consensus pattern (15 bp):
TTTAGGGTTGAGGGT
Found at i:9117022 original size:20 final size:21
Alignment explanation
Indices: 9116999--9117059 Score: 79
Period size: 20 Copynumber: 2.9 Consensus size: 21
9116989 TTTAAAAAAT
9116999 AATTTCAAATATATATTT-AA
1 AATTTCAAATATATATTTAAA
*
9117019 AATTTAAAATATATATTATAAA
1 AATTTCAAATATATATT-TAAA
*
9117041 ACATTTCAAATATACATTT
1 A-ATTTCAAATATATATTT
9117060 CTATTTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 16 0.46
21 1 0.03
22 4 0.11
23 14 0.40
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.43
Consensus pattern (21 bp):
AATTTCAAATATATATTTAAA
Found at i:9118131 original size:26 final size:26
Alignment explanation
Indices: 9118094--9118177 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
9118084 TGATACAAAT
* *
9118094 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9118120 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9118146 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9118172 TGATAA
1 TGATAA
9118178 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:9120192 original size:137 final size:137
Alignment explanation
Indices: 9119943--9120229 Score: 520
Period size: 137 Copynumber: 2.1 Consensus size: 137
9119933 GAGTAGTCTC
*
9119943 CCCAAATGGGCTTGTATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
9120008 TGTTATCTGAATAAGGGGCTAAGGCCCGGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTCAAAAGGGCTCTGGCCCAGTACC
9120073 ACTGTTA
131 ACTGTTA
9120080 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
9120145 TGTTATCTGAATAATGGGCTAAGGCCCAGTTTATTGTAATCTCAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTCAAAAGGGCTCTGGCCCAGTACC
9120210 ACTGTTA
131 ACTGTTA
**
9120217 CCTGAATGGGCTT
1 CCCAAATGGGCTT
9120230 AGGCCCAATA
Statistics
Matches: 144, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTCAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:9129197 original size:16 final size:18
Alignment explanation
Indices: 9129158--9129191 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9129148 TAAGTTTATA
9129158 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
9129175 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
9129192 AATTTAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:9129858 original size:36 final size:36
Alignment explanation
Indices: 9129801--9129885 Score: 120
Period size: 36 Copynumber: 2.4 Consensus size: 36
9129791 ACAAATATTC
*
9129801 AATTTTATGTTATTTATTTTATGATTTGAT-ATTTTAT
1 AATTTTAT-TTATTTACTTTATGATTTGATAATTTT-T
*
9129838 CATTTTATTTATTTACTTTATGATTTGATAATTTTT
1 AATTTTATTTATTTACTTTATGATTTGATAATTTTT
9129874 AATTTT-TTTATT
1 AATTTTATTTATT
9129886 AATTGTTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
35 6 0.14
36 26 0.59
37 12 0.27
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (36 bp):
AATTTTATTTATTTACTTTATGATTTGATAATTTTT
Found at i:9130701 original size:5 final size:5
Alignment explanation
Indices: 9130693--9130725 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
9130683 AAAGAATAGA
*
9130693 ATTAT ATTAT ATAAT ATTAT ATTAT ATTAT ATT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATT
9130726 TAAACTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:9132721 original size:30 final size:30
Alignment explanation
Indices: 9132687--9132751 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
9132677 ACTTATTTTA
9132687 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
* *
9132717 TTGTTAATTTTGTTATTTTTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
9132747 TTGTT
1 TTGTT
9132752 TGTTAAGTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.22, C:0.03, G:0.15, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:9133271 original size:18 final size:18
Alignment explanation
Indices: 9133250--9133291 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
9133240 GAAACATTTA
*
9133250 TTTTAATGT-TTTTAGTAT
1 TTTTAATGTATTATA-TAT
*
9133268 TTTTGATGTATTATATAT
1 TTTTAATGTATTATATAT
9133286 TTTTAA
1 TTTTAA
9133292 AAAATATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (18 bp):
TTTTAATGTATTATATAT
Found at i:9133316 original size:14 final size:14
Alignment explanation
Indices: 9133290--9133323 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
9133280 ATATATTTTT
9133290 AAAAAATATATATA
1 AAAAAATATATATA
9133304 AAAATAATA-ATATA
1 AAAA-AATATATATA
9133318 AAAAAA
1 AAAAAA
9133324 ATTAATACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 13 0.68
15 4 0.21
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAAAATATATATA
Found at i:9133329 original size:15 final size:14
Alignment explanation
Indices: 9133290--9133330 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
9133280 ATATATTTTT
9133290 AAAAAATATATATAA
1 AAAAAATA-ATATAA
*
9133305 AAATAATAATATAA
1 AAAAAATAATATAA
9133319 AAAAAATTAATA
1 AAAAAA-TAATA
9133331 CAATAGGGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AAAAAATAATATAA
Found at i:9143391 original size:10 final size:10
Alignment explanation
Indices: 9143368--9143397 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
9143358 GTCACCAATG
9143368 CTTGCAAGATC
1 CTTGCAA-ATC
9143379 CTTGCAAATC
1 CTTGCAAATC
9143389 CTTGCAAAT
1 CTTGCAAAT
9143398 TCAGCTGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.63
11 7 0.37
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (10 bp):
CTTGCAAATC
Found at i:9152430 original size:23 final size:23
Alignment explanation
Indices: 9152404--9152449 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
9152394 AAAGAGTAAA
*
9152404 TTAGTTATTTCTATTCAACATTT
1 TTAGTTATTTCTATTCAAAATTT
9152427 TTAGTTATTTCTATTCAAAATTT
1 TTAGTTATTTCTATTCAAAATTT
9152450 CCTCTATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.11, G:0.04, T:0.57
Consensus pattern (23 bp):
TTAGTTATTTCTATTCAAAATTT
Found at i:9153644 original size:15 final size:16
Alignment explanation
Indices: 9153624--9153654 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
9153614 CCTAGGTTTA
9153624 AGTTAAAAA-AAAGAC
1 AGTTAAAAAGAAAGAC
9153639 AGTTAAAAAGAAAGAC
1 AGTTAAAAAGAAAGAC
9153655 GCACACTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.65, C:0.06, G:0.16, T:0.13
Consensus pattern (16 bp):
AGTTAAAAAGAAAGAC
Found at i:9170377 original size:20 final size:20
Alignment explanation
Indices: 9170352--9170390 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
9170342 CGAGATTGCA
9170352 CTTTGGTGCCCCTATTTACG
1 CTTTGGTGCCCCTATTTACG
*
9170372 CTTTGGTGTCCCTATTTAC
1 CTTTGGTGCCCCTATTTAC
9170391 ACTTCAGTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.10, C:0.28, G:0.18, T:0.44
Consensus pattern (20 bp):
CTTTGGTGCCCCTATTTACG
Found at i:9171085 original size:28 final size:28
Alignment explanation
Indices: 9171045--9171101 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
9171035 ATCAAGGAGA
9171045 ATGGTTCATAAATGCAATGCTTGCTTGG
1 ATGGTTCATAAATGCAATGCTTGCTTGG
9171073 ATGGTTCATAAATGCAATGCTTGCTTGG
1 ATGGTTCATAAATGCAATGCTTGCTTGG
9171101 A
1 A
9171102 ATGTTTTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (28 bp):
ATGGTTCATAAATGCAATGCTTGCTTGG
Found at i:9181076 original size:23 final size:24
Alignment explanation
Indices: 9181049--9181100 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
9181039 TTATGCTCTT
9181049 TTATTTGT-G-TATTATTATTATTA
1 TTATTTGTCGTTATTATT-TTATTA
*
9181072 TTA-TTGTCGTTATTATTTTATTT
1 TTATTTGTCGTTATTATTTTATTA
9181095 TTATTT
1 TTATTT
9181101 CTTTTCTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 4 0.16
23 12 0.48
24 9 0.36
ACGTcount: A:0.21, C:0.02, G:0.08, T:0.69
Consensus pattern (24 bp):
TTATTTGTCGTTATTATTTTATTA
Found at i:9181130 original size:12 final size:12
Alignment explanation
Indices: 9181081--9181135 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
9181071 ATTATTGTCG
9181081 TTATTATTT-TAT
1 TTATTATTTCT-T
9181093 TT-TTATTTCTT
1 TTATTATTTCTT
* * *
9181104 TTCTCA-TTATT
1 TTATTATTTCTT
9181115 TTATTATTTCTT
1 TTATTATTTCTT
9181127 TTATTATTT
1 TTATTATTT
9181136 TTGACATTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
11 17 0.49
12 18 0.51
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (12 bp):
TTATTATTTCTT
Found at i:9185940 original size:42 final size:42
Alignment explanation
Indices: 9185763--9185925 Score: 238
Period size: 42 Copynumber: 3.9 Consensus size: 42
9185753 CGCAGGTGGA
*
9185763 ACCGTTCCTACTCACCTGATGATGGATACTATAGAAGGCGGG
1 ACCGTTCCTACTCACCTGATGATCGATACTATAGAAGGCGGG
* * *
9185805 GCCGTTCTTA-TACACCTGATGAACGATACTATAGAAGGCGGG
1 ACCGTTCCTACT-CACCTGATGATCGATACTATAGAAGGCGGG
* * *
9185847 ATCGTTCCTACTCACCTGACGATCGATACTACAGAAGGCGGG
1 ACCGTTCCTACTCACCTGATGATCGATACTATAGAAGGCGGG
*
9185889 ACTGTTCCTACTCACCTGATGATCGATACTATAGAAG
1 ACCGTTCCTACTCACCTGATGATCGATACTATAGAAG
9185926 ACATGACCGG
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
41 1 0.01
42 103 0.98
43 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (42 bp):
ACCGTTCCTACTCACCTGATGATCGATACTATAGAAGGCGGG
Found at i:9186850 original size:16 final size:16
Alignment explanation
Indices: 9186839--9186900 Score: 56
Period size: 17 Copynumber: 3.8 Consensus size: 16
9186829 TTAATTACTT
9186839 TAATATTAAATTAATA
1 TAATATTAAATTAATA
* * *
9186855 TAATATT-TATCAAGA
1 TAATATTAAATTAATA
9186870 TAAATATTAAATTAA-A
1 T-AATATTAAATTAATA
9186886 TTAAATATTAAATTA
1 -T-AATATTAAATTA
9186901 TTAAAATAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
15 6 0.16
16 14 0.37
17 18 0.47
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (16 bp):
TAATATTAAATTAATA
Found at i:9188501 original size:16 final size:16
Alignment explanation
Indices: 9188480--9188510 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9188470 TTATGTATGC
*
9188480 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
9188496 AAAATACAAAAGACA
1 AAAATACAAAAGACA
9188511 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:9193189 original size:34 final size:34
Alignment explanation
Indices: 9193151--9193218 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
9193141 GGAGAGAGGG
9193151 AATGCATGCTTCAAAATCCGTTTCTCAGGACGTA
1 AATGCATGCTTCAAAATCCGTTTCTCAGGACGTA
*
9193185 AATGCATGCTTCAAAATCCGTTTCTGAGGACGTA
1 AATGCATGCTTCAAAATCCGTTTCTCAGGACGTA
9193219 CTTTTGTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (34 bp):
AATGCATGCTTCAAAATCCGTTTCTCAGGACGTA
Found at i:9204688 original size:5 final size:5
Alignment explanation
Indices: 9204678--9204706 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
9204668 TATAAAATAT
9204678 TATTA TATTA TATTA TATTA TATTA -ATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA
9204707 AAGAAAGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:9204787 original size:17 final size:18
Alignment explanation
Indices: 9204755--9204789 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
9204745 CAATTGTGTG
*
9204755 GTAATAAAATATATATGT
1 GTAATAAAATACATATGT
9204773 GTAAT-AAATACATATGT
1 GTAATAAAATACATATGT
9204790 ACATTTGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.49, C:0.03, G:0.11, T:0.37
Consensus pattern (18 bp):
GTAATAAAATACATATGT
Found at i:9205986 original size:5 final size:5
Alignment explanation
Indices: 9205976--9206010 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
9205966 TTTATTGAAT
*
9205976 TAATA TAATA TAACA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA
9206011 ATATTTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (5 bp):
TAATA
Found at i:9208519 original size:43 final size:43
Alignment explanation
Indices: 9208424--9208531 Score: 139
Period size: 43 Copynumber: 2.5 Consensus size: 43
9208414 ATCAAGATGT
* *
9208424 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTAATGA
*
9208467 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCAT-TAAT-C
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCAT--TGTAATGA
* *
9208510 GATTTCGTGTAAGACCCTGTCT
1 GATTACGTGTAAGACCATGTCT
9208532 TGTACAGTAG
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
43 54 0.93
44 3 0.05
45 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTAATGA
Found at i:9211113 original size:50 final size:50
Alignment explanation
Indices: 9211037--9211213 Score: 284
Period size: 50 Copynumber: 3.5 Consensus size: 50
9211027 CCATGGCAAC
* *
9211037 AAGTGATAAGTGATAGCTTCGACTACACTTATCTGATCAAGAACAAGTGA
1 AAGTGATAAATGATAGCTTCGGCTACACTTATCTGATCAAGAACAAGTGA
9211087 AAGTGATAAATGATAGCTTCGGCTACACTTATCTGATCAAGAACAAGTGA
1 AAGTGATAAATGATAGCTTCGGCTACACTTATCTGATCAAGAACAAGTGA
* *
9211137 AAGTGATAAATGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAATGATAGCTTCGGCTACACTTATCTGATCAAGAACAAGTGA
*
9211187 CAAGTGA-AAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAA-TGATAGCTTCGGCTAC
9211214 CTGATCAGTG
Statistics
Matches: 120, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
50 99 0.82
51 21 0.17
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.25
Consensus pattern (50 bp):
AAGTGATAAATGATAGCTTCGGCTACACTTATCTGATCAAGAACAAGTGA
Found at i:9211227 original size:31 final size:31
Alignment explanation
Indices: 9211189--9211368 Score: 279
Period size: 31 Copynumber: 5.8 Consensus size: 31
9211179 ACAAATGACA
9211189 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
9211220 AGTGAAAAGTGGTAGCTCCGGCTACCTAATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
9211251 AGTGAAAAATGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
9211282 AGTGAAAAGTGGTAGATTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
9211313 AGTGAAAAATGGTAGCTTTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
9211344 AGTGAATAGTGGTAGCTTCAGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
9211369 AAGTGACAAG
Statistics
Matches: 133, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 133 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:9219707 original size:43 final size:43
Alignment explanation
Indices: 9219557--9219719 Score: 159
Period size: 43 Copynumber: 3.8 Consensus size: 43
9219547 ACATTAGGTT
*
9219557 ATCGAGATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* * **
9219600 ATTG-TATTGAGATTATGTGTAAGACCATGTCTGGGACATTGGC
1 ATCGATA-TGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* ** * * * * *
9219643 ATCGTTAAT-CAATTTCGTGTAAGACCCTGTTTGGGACAGTGGC
1 ATCGAT-ATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* *
9219686 ATCGATATGTGATAACATGTAAGACCATATCTGG
1 ATCGATATGTGATTACATGTAAGACCATGTCTGG
9219720 AATATGGCAT
Statistics
Matches: 94, Mismatches: 22, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
42 3 0.03
43 88 0.94
44 2 0.02
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
Found at i:9219821 original size:25 final size:25
Alignment explanation
Indices: 9219787--9219836 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
9219777 TTTAGCGGGC
*
9219787 AAAGTCAAGTCGAGAAAGAATATGT
1 AAAGCCAAGTCGAGAAAGAATATGT
9219812 AAAGCCAAGTCGAGAAAGAATATGT
1 AAAGCCAAGTCGAGAAAGAATATGT
9219837 GAATGAACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.48, C:0.10, G:0.24, T:0.18
Consensus pattern (25 bp):
AAAGCCAAGTCGAGAAAGAATATGT
Found at i:9224233 original size:26 final size:27
Alignment explanation
Indices: 9224197--9224259 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
9224187 CTTAGCTTTT
*
9224197 ATGAGCATCCTGATT-A-TAGGCTCTTA
1 ATGAGCTTCCTG-TTAAGTAGGCTCTTA
*
9224223 ATGAGCTTCCTGTTAAGTTGGCTCTTA
1 ATGAGCTTCCTGTTAAGTAGGCTCTTA
*
9224250 GTGAGCTTCC
1 ATGAGCTTCC
9224260 CGATAGTGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 2 0.06
26 12 0.38
27 18 0.56
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
ATGAGCTTCCTGTTAAGTAGGCTCTTA
Found at i:9224353 original size:23 final size:23
Alignment explanation
Indices: 9224316--9224361 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
9224306 CCCATTATAT
* *
9224316 GGCTTTTTGTAAGCTTCTTGATA
1 GGCTTTTCGTAAGCTTCTCGATA
*
9224339 GGCTTTTCGTGAGCTTCTCGATA
1 GGCTTTTCGTAAGCTTCTCGATA
9224362 TGGTTCTTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.15, C:0.17, G:0.24, T:0.43
Consensus pattern (23 bp):
GGCTTTTCGTAAGCTTCTCGATA
Found at i:9224453 original size:23 final size:24
Alignment explanation
Indices: 9224194--9224475 Score: 98
Period size: 25 Copynumber: 11.5 Consensus size: 24
9224184 CACCTTAGCT
*
9224194 TTTATGAGCATCCTGATTATAGGCTC
1 TTTATGAGCTTCCTGA-TAT-GGCTC
* *
9224220 TTAATGAGCTTCCTGTTAAGTTGGCTC
1 TTTATGAGCTTCCTGAT-A--TGGCTC
*
9224247 -TTAGTGAGCTTCCCGATA-GTGCTC
1 TTTA-TGAGCTTCCTGATATG-GCTC
** *
9224271 GCT-TGAACTTCCTGATATATGGCT-
1 TTTATGAGCTTCCTG--ATATGGCTC
* ** * * *
9224295 ATTCGGAGTTTCCCATTATATGGCTT
1 TTTATGAGCTT-CC-TGATATGGCTC
* * *
9224321 TTTGTAAGCTTCTTGATA-GGCT-
1 TTTATGAGCTTCCTGATATGGCTC
* *
9224343 TTTCGTGAGCTT-CTCGATATGGTTC
1 TTT-ATGAGCTTCCT-GATATGGCTC
* * *
9224368 TTTGTGAACTTTCTGATTATGGCTC
1 TTTATGAGCTTCCTGA-TATGGCTC
*
9224393 -TTATGAGCTTCCTGTTATATAGC-C
1 TTTATGAGCTTCCTG--ATATGGCTC
** *
9224417 TGGATAAGCTTCCTGATA-GGCTC
1 TTTATGAGCTTCCTGATATGGCTC
*
9224440 TTTATGAGCTTCCTGAAATGGCTC
1 TTTATGAGCTTCCTGATATGGCTC
* *
9224464 TGTGTGAGCTTC
1 TTTATGAGCTTC
9224476 ATGTTATAAG
Statistics
Matches: 191, Mismatches: 41, Indels: 50
0.68 0.15 0.18
Matches are distributed among these distances:
22 6 0.03
23 43 0.23
24 48 0.25
25 49 0.26
26 27 0.14
27 17 0.09
28 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.40
Consensus pattern (24 bp):
TTTATGAGCTTCCTGATATGGCTC
Found at i:9224471 original size:24 final size:23
Alignment explanation
Indices: 9224423--9224475 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 23
9224413 AGCCTGGATA
* *
9224423 AGCTTCCTGATAGGCTCTTTATG
1 AGCTTCCTGAAAGGCTCTGTATG
*
9224446 AGCTTCCTGAAATGGCTCTGTGTG
1 AGCTTCCTGAAA-GGCTCTGTATG
9224470 AGCTTC
1 AGCTTC
9224476 ATGTTATAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 11 0.42
24 15 0.58
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.36
Consensus pattern (23 bp):
AGCTTCCTGAAAGGCTCTGTATG
Found at i:9226125 original size:50 final size:50
Alignment explanation
Indices: 9226008--9226152 Score: 211
Period size: 50 Copynumber: 2.9 Consensus size: 50
9225998 AGCCAAAGCT
* * * * * **
9226008 ATCTGGTACACATAGTCGCTTGCACTTAGTACTACACATGCGACC-AATT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
9226057 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
*
9226107 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
9226153 CACAATAGAT
Statistics
Matches: 87, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
49 40 0.46
50 47 0.54
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (50 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:9230802 original size:51 final size:50
Alignment explanation
Indices: 9230627--9230818 Score: 271
Period size: 50 Copynumber: 3.8 Consensus size: 50
9230617 GATAATAACA
* ** *
9230627 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGT-TC-TCGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATC-TCGG
* * *
9230676 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
9230726 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
9230776 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
9230819 TTACCCAAAT
Statistics
Matches: 127, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
49 34 0.27
50 51 0.40
51 42 0.33
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:9230933 original size:13 final size:13
Alignment explanation
Indices: 9230912--9230942 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
9230902 GCTTGGATCA
*
9230912 TCATCAAATAAAT
1 TCATAAAATAAAT
9230925 TCATAAAATAAAT
1 TCATAAAATAAAT
9230938 TCATA
1 TCATA
9230943 TTGCTGGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:9231188 original size:30 final size:30
Alignment explanation
Indices: 9231153--9231210 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
9231143 CCTCGACTCT
*
9231153 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
9231183 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
9231211 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:9238228 original size:51 final size:51
Alignment explanation
Indices: 9238149--9238347 Score: 231
Period size: 51 Copynumber: 3.8 Consensus size: 51
9238139 GATAATAACA
* ** *
9238149 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATGATAGG
* * * * *
9238200 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCAT-CTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATAGG
*
9238250 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGGACCTCTCATGATCTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGGACCTCTCATGA--T-AGG
*
9238305 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
9238348 TTACCCAAAT
Statistics
Matches: 125, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
49 1 0.01
50 36 0.29
51 45 0.36
54 1 0.01
55 10 0.08
56 32 0.26
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATAGG
Found at i:9238463 original size:13 final size:13
Alignment explanation
Indices: 9238442--9238473 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
9238432 GCTTGGATCA
*
9238442 TCATCAAATAAAT
1 TCATAAAATAAAT
9238455 TCATAAAATAAAT
1 TCATAAAATAAAT
9238468 TCATAA
1 TCATAA
9238474 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:9238720 original size:30 final size:30
Alignment explanation
Indices: 9238685--9238742 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
9238675 CCTCGACTCT
*
9238685 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
9238715 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
9238743 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:9245864 original size:102 final size:100
Alignment explanation
Indices: 9245737--9245918 Score: 292
Period size: 102 Copynumber: 1.8 Consensus size: 100
9245727 GATAATAACA
** * * *
9245737 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGGTGCCCATTGCCATG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTG-CCAATGCCATG
9245802 TCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
64 TCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
*
9245839 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTC
9245904 CCAGACATGGTCTTA
66 CCAGACATGGTCTTA
9245919 CATGGGATCT
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
100 27 0.36
101 11 0.15
102 36 0.49
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (100 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTC
CCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
Found at i:9245868 original size:50 final size:50
Alignment explanation
Indices: 9245737--9245930 Score: 280
Period size: 50 Copynumber: 3.8 Consensus size: 50
9245727 GATAATAACA
* ** * *
9245737 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
9245788 TGCCCATTGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TG-CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
9245839 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
9245889 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
9245931 TTACCCAAAT
Statistics
Matches: 128, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
50 84 0.66
51 13 0.10
52 31 0.24
ACGTcount: A:0.20, C:0.29, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:9246045 original size:13 final size:13
Alignment explanation
Indices: 9246024--9246055 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
9246014 GCTTGGATCA
*
9246024 TCATCAAATAAAT
1 TCATAAAATAAAT
9246037 TCATAAAATAAAT
1 TCATAAAATAAAT
9246050 TCATAA
1 TCATAA
9246056 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:9246305 original size:30 final size:30
Alignment explanation
Indices: 9246270--9246327 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
9246260 CCTCGACTCT
*
9246270 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
9246300 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
9246328 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:9247472 original size:12 final size:12
Alignment explanation
Indices: 9247455--9247481 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9247445 GACACACCCA
9247455 TGTCACAAGCCG
1 TGTCACAAGCCG
9247467 TGTCACAAGCCG
1 TGTCACAAGCCG
9247479 TGT
1 TGT
9247482 GAAAACAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (12 bp):
TGTCACAAGCCG
Found at i:9249166 original size:28 final size:28
Alignment explanation
Indices: 9249134--9249229 Score: 156
Period size: 28 Copynumber: 3.4 Consensus size: 28
9249124 CGATATTTTG
9249134 CACACTAAGTGCCATTCTCAATATCTCA
1 CACACTAAGTGCCATTCTCAATATCTCA
*
9249162 CACACTAAGTGCCATTCTCAATATCTTA
1 CACACTAAGTGCCATTCTCAATATCTCA
* *
9249190 CACACTAAGTGCCATTCTCAATATTTCG
1 CACACTAAGTGCCATTCTCAATATCTCA
*
9249218 CACAATAAGTGC
1 CACACTAAGTGC
9249230 TATATTTGAT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.32, C:0.29, G:0.09, T:0.29
Consensus pattern (28 bp):
CACACTAAGTGCCATTCTCAATATCTCA
Found at i:9249308 original size:40 final size:40
Alignment explanation
Indices: 9249264--9249348 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
9249254 GTGCTGCACA
*
9249264 TAGCCAAAGCTAT-CTCAAATCACACACTAAGTGCCAAATT
1 TAGCCAAAGCTATAC-CAAACCACACACTAAGTGCCAAATT
* * * *
9249304 TAGCCGAAGCTATACCGAACCGCACACTAAGTGCCATATT
1 TAGCCAAAGCTATACCAAACCACACACTAAGTGCCAAATT
9249344 TAGCC
1 TAGCC
9249349 GATATGTCAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 38 0.97
41 1 0.03
ACGTcount: A:0.35, C:0.29, G:0.14, T:0.21
Consensus pattern (40 bp):
TAGCCAAAGCTATACCAAACCACACACTAAGTGCCAAATT
Found at i:9251156 original size:22 final size:23
Alignment explanation
Indices: 9251129--9251176 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
9251119 TATTATTGTT
*
9251129 AATTAATTATGAATTTT-AATTA
1 AATTAATTATAAATTTTAAATTA
*
9251151 AATTAATTTTAAATTTTAAATTA
1 AATTAATTATAAATTTTAAATTA
9251174 AAT
1 AAT
9251177 ATTAATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
AATTAATTATAAATTTTAAATTA
Found at i:9251160 original size:15 final size:15
Alignment explanation
Indices: 9251140--9251190 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
9251130 ATTAATTATG
9251140 AATTTTAATTAAATT
1 AATTTTAATTAAATT
9251155 AATTTTAAATTTTAAATT
1 AATTTT-AA--TTAAATT
*
9251173 AAATATTAA-TAAATT
1 -AATTTTAATTAAATT
9251188 AAT
1 AAT
9251191 ATCATTACTT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
14 3 0.10
15 12 0.39
16 2 0.06
18 9 0.29
19 5 0.16
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
AATTTTAATTAAATT
Found at i:9255624 original size:18 final size:18
Alignment explanation
Indices: 9255601--9255635 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
9255591 GAGATCGAAC
9255601 CCCAATCACATAATTAAG
1 CCCAATCACATAATTAAG
9255619 CCCAATCACATAATTAA
1 CCCAATCACATAATTAA
9255636 AAGATGAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.29, G:0.03, T:0.23
Consensus pattern (18 bp):
CCCAATCACATAATTAAG
Found at i:9255718 original size:23 final size:23
Alignment explanation
Indices: 9255688--9255732 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
9255678 TTCTTTTTCA
9255688 TTTTATTATTACCCCAACATTCG
1 TTTTATTATTACCCCAACATTCG
*
9255711 TTTTATTATTACTCCAACATTC
1 TTTTATTATTACCCCAACATTC
9255733 ACTTGGCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.24, G:0.02, T:0.47
Consensus pattern (23 bp):
TTTTATTATTACCCCAACATTCG
Found at i:9259644 original size:30 final size:29
Alignment explanation
Indices: 9259610--9259668 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
9259600 TTAGAATTTC
9259610 TTTTATAAAAATAGTAAAAAAAATATAAAA
1 TTTTAT-AAAATAGTAAAAAAAATATAAAA
* * *
9259640 TTTTATAAAGTCGTAAAAAAATTATAAAA
1 TTTTATAAAATAGTAAAAAAAATATAAAA
9259669 AATATAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (29 bp):
TTTTATAAAATAGTAAAAAAAATATAAAA
Found at i:9259674 original size:28 final size:29
Alignment explanation
Indices: 9259623--9259677 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
9259613 TATAAAAATA
**
9259623 GTAAAAAAAATATAAAATTTTATAAAGTC
1 GTAAAAAAAATATAAAATAATATAAAGTC
*
9259652 GTAAAAAAATTATAAAA-AATATAAAG
1 GTAAAAAAAATATAAAATAATATAAAG
9259678 AAATATAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (29 bp):
GTAAAAAAAATATAAAATAATATAAAGTC
Found at i:9259892 original size:11 final size:9
Alignment explanation
Indices: 9259878--9259960 Score: 58
Period size: 9 Copynumber: 8.7 Consensus size: 9
9259868 TTTTGATGCA
9259878 TTTTATAATCT
1 TTTTATAA--T
*
9259889 TTTTACAAT
1 TTTTATAAT
*
9259898 TTTTATAACA
1 TTTTATAA-T
* *
9259908 TTTTACATT
1 TTTTATAAT
*
9259917 TTTTATATT
1 TTTTATAAT
*
9259926 TTTTACAAT
1 TTTTATAAT
9259935 TTTTATTAAAT
1 TTTTA-T-AAT
*
9259946 TTTAATAAT
1 TTTTATAAT
9259955 TTTTAT
1 TTTTAT
9259961 TGATGTTTAT
Statistics
Matches: 57, Mismatches: 12, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
9 36 0.63
10 7 0.12
11 14 0.25
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (9 bp):
TTTTATAAT
Found at i:9259911 original size:19 final size:19
Alignment explanation
Indices: 9259878--9259960 Score: 80
Period size: 19 Copynumber: 4.3 Consensus size: 19
9259868 TTTTGATGCA
*
9259878 TTTTATAATCTTTTTACAAT
1 TTTTATAA-CATTTTACAAT
*
9259898 TTTTATAACATTTTACATT
1 TTTTATAACATTTTACAAT
**
9259917 TTTTAT-ATTTTTTACAAT
1 TTTTATAACATTTTACAAT
*
9259935 TTTTATTAA-ATTTTAATAAT
1 TTTTA-TAACATTTT-ACAAT
9259955 TTTTAT
1 TTTTAT
9259961 TGATGTTTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
18 14 0.26
19 21 0.40
20 18 0.34
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTTATAACATTTTACAAT
Found at i:9260281 original size:88 final size:86
Alignment explanation
Indices: 9260120--9260292 Score: 213
Period size: 88 Copynumber: 2.0 Consensus size: 86
9260110 GAGTGCAAAA
* * **
9260120 CAAAAAAAAAACAATGGCTTAATTTTTTTTTTGAAGTTTAAGGGTCTTTTTGATTCATTTTGGCA
1 CAAAAAAAAAACAAGGGCTTAATTTTTTTTTTGAAGTTTAAGGGCCTTTTTGATT-ATTTTGAAA
*
9260185 GTTCAAGTACTCAATTAAGTAC
65 GTTCAAGTACCCAATTAAGTAC
** * *
9260207 CAAAAAAAAATTAAGGGCTTAATTGTTTTTTTTTAAGTTTGAGGGCCTTTTTGA-TATTTCTTGA
1 CAAAAAAAAAACAAGGGCTTAATT-TTTTTTTTGAAGTTTAAGGGCCTTTTTGATTA-TT-TTGA
*
9260271 AAGTTTAAGTACCCAATTAAGT
63 AAGTTCAAGTACCCAATTAAGT
9260293 CAAAAGAAAA
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
86 1 0.01
87 24 0.33
88 48 0.66
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (86 bp):
CAAAAAAAAAACAAGGGCTTAATTTTTTTTTTGAAGTTTAAGGGCCTTTTTGATTATTTTGAAAG
TTCAAGTACCCAATTAAGTAC
Found at i:9260602 original size:84 final size:85
Alignment explanation
Indices: 9260497--9260721 Score: 239
Period size: 84 Copynumber: 2.6 Consensus size: 85
9260487 AAGTGTAATT
* * * *
9260497 TTTTTTTAAAAAGAGCAATTAA-TTTTTTTTTTACATTCAATTGGGTATTTGAATTTTCAAAATG
1 TTTTTTCAAAAAAAGCAATTAAGTTTTTTTTTTACATTCAATTGGGTACTTGAACTTTCAAAATG
*
9260561 CATCAAAAAA-GC-CCCAAAAC
66 CAT-AAAAAATACTCCC-AAAC
* * *
9260581 -TTTTTCAAATAAAAGCCATTAAGCCTTTTTTTTTAC-TT-AATTGGGTGCTTGAACTTTCAAAA
1 TTTTTTCAAA-AAAAGCAATTAAG-TTTTTTTTTTACATTCAATTGGGTACTTGAACTTTCAAAA
*
9260643 TGCATAAAAAATACTCTCAAAC
64 TGCATAAAAAATACTCCCAAAC
* *
9260665 TTTTTTCAAAAAAAGCAATTAAGTCTTTTCTTTTTTCACTCAATTGGGCT-CTTGAAC
1 TTTTTTCAAAAAAAGCAATTAAGT-TTTT-TTTTTACATTCAATTGGG-TACTTGAAC
9260722 CGTCAAAGTG
Statistics
Matches: 117, Mismatches: 13, Indels: 19
0.79 0.09 0.13
Matches are distributed among these distances:
83 14 0.12
84 57 0.49
85 19 0.16
86 12 0.10
87 14 0.12
88 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.40
Consensus pattern (85 bp):
TTTTTTCAAAAAAAGCAATTAAGTTTTTTTTTTACATTCAATTGGGTACTTGAACTTTCAAAATG
CATAAAAAATACTCCCAAAC
Found at i:9261007 original size:19 final size:18
Alignment explanation
Indices: 9260977--9261050 Score: 67
Period size: 19 Copynumber: 3.9 Consensus size: 18
9260967 TTCTTTTACC
*
9260977 ATTTTTATAATTTTTATA
1 ATTTTTAAAATTTTTATA
*
9260995 ATTTTTCAAAATTTTTCAAA
1 ATTTTT-AAAATTTTT-ATA
*
9261015 ATTTTTAATATTTTTATTA
1 ATTTTTAAAATTTTTA-TA
** *
9261034 AAATTTAATATTTTTAT
1 ATTTTTAAAATTTTTAT
9261051 TTTTATTTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
18 8 0.17
19 31 0.66
20 8 0.17
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTTTTAAAATTTTTATA
Found at i:9261020 original size:11 final size:10
Alignment explanation
Indices: 9260985--9261029 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
9260975 CCATTTTTAT
*
9260985 AATTTTT-AT
1 AATTTTTCAA
9260994 AATTTTTCAA
1 AATTTTTCAA
9261004 AATTTTTCAA
1 AATTTTTCAA
9261014 AATTTTT-AA
1 AATTTTTCAA
*
9261023 TATTTTT
1 AATTTTT
9261030 ATTAAAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
9 15 0.45
10 18 0.55
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (10 bp):
AATTTTTCAA
Found at i:9261040 original size:10 final size:9
Alignment explanation
Indices: 9260977--9261030 Score: 63
Period size: 9 Copynumber: 5.8 Consensus size: 9
9260967 TTCTTTTACC
*
9260977 ATTTTTATA
1 ATTTTTAAA
*
9260986 ATTTTTATA
1 ATTTTTAAA
9260995 ATTTTTCAAA
1 ATTTTT-AAA
9261005 ATTTTTCAAA
1 ATTTTT-AAA
*
9261015 ATTTTTAAT
1 ATTTTTAAA
9261024 ATTTTTA
1 ATTTTTA
9261031 TTAAAATTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
9 24 0.57
10 18 0.43
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (9 bp):
ATTTTTAAA
Found at i:9265406 original size:79 final size:76
Alignment explanation
Indices: 9265289--9265433 Score: 209
Period size: 79 Copynumber: 1.9 Consensus size: 76
9265279 AAAGTTTATT
* *
9265289 TATTTAAATTACAAAAAAAACCATAAAATTGATAAATAAAATGGCAAAAAATTCATTACACAAAT
1 TATTTAAATTACAAAAAAAAACATAAAATTGATAAATAAAATGCCAAAAAATTCATTACACAAAT
9265354 ACAAAATTGAC
66 ACAAAATTGAC
* * * *
9265365 TATTTAAATTGCAAAAAAAAAACATTTTAAATTGATGAATAAAATGCCAAAAAATTCATTACATA
1 TATTTAAATTAC-AAAAAAAAACA--TAAAATTGATAAATAAAATGCCAAAAAATTCATTACACA
9265430 AATA
63 AATA
9265434 TGAAGTTATT
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
76 11 0.18
77 10 0.17
79 39 0.65
ACGTcount: A:0.57, C:0.10, G:0.06, T:0.28
Consensus pattern (76 bp):
TATTTAAATTACAAAAAAAAACATAAAATTGATAAATAAAATGCCAAAAAATTCATTACACAAAT
ACAAAATTGAC
Found at i:9265673 original size:33 final size:32
Alignment explanation
Indices: 9265629--9265760 Score: 131
Period size: 33 Copynumber: 4.0 Consensus size: 32
9265619 ACTTGAGCCA
* * *
9265629 GGAGGAATGGAGTACA-GCGGTGGATACGGGCC
1 GGAGGAGTGGAGTA-AGGAGGTGGATACAGGCC
* *
9265661 GAGAGGAGTGGAGTAAGGCGGTGGATACAGACC
1 G-GAGGAGTGGAGTAAGGAGGTGGATACAGGCC
* * *
9265694 GGGAGGAGTGGAGTACGAAGGTGGATACAGGCT
1 -GGAGGAGTGGAGTAAGGAGGTGGATACAGGCC
* *
9265727 GGAAGGAGTGGAGTAATGAGGTGGATACAAGCC
1 GG-AGGAGTGGAGTAAGGAGGTGGATACAGGCC
9265760 G
1 G
9265761 AAATGACTGG
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
32 4 0.05
33 78 0.94
34 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.46, T:0.14
Consensus pattern (32 bp):
GGAGGAGTGGAGTAAGGAGGTGGATACAGGCC
Found at i:9265735 original size:66 final size:66
Alignment explanation
Indices: 9265629--9265755 Score: 168
Period size: 66 Copynumber: 1.9 Consensus size: 66
9265619 ACTTGAGCCA
* * *
9265629 GGAGGAATGGAGTACAGCGGTGGATACGGGCCGAGAGGAGTGGAGTAAGGCGGTGGATACAGACC
1 GGAGGAATGGAGTACAGAGGTGGATACAGGCCGAGAGGAGTGGAGTAAGGAGGTGGATACAGACC
9265694 G
66 G
* * *
9265695 GGAGGAGTGGAGTAC-GAAGGTGGATACAGGCTG-GAAGGAGTGGAGTAATGAGGTGGATACA
1 GGAGGAATGGAGTACAG-AGGTGGATACAGGCCGAG-AGGAGTGGAGTAAGGAGGTGGATACA
9265756 AGCCGAAATG
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
65 2 0.04
66 51 0.96
ACGTcount: A:0.29, C:0.10, G:0.46, T:0.14
Consensus pattern (66 bp):
GGAGGAATGGAGTACAGAGGTGGATACAGGCCGAGAGGAGTGGAGTAAGGAGGTGGATACAGACC
G
Found at i:9265772 original size:33 final size:33
Alignment explanation
Indices: 9265647--9265783 Score: 98
Period size: 33 Copynumber: 4.2 Consensus size: 33
9265637 GGAGTACAGC
** * * * *
9265647 GGTGGATACGGGCCGAGAGGAGTGGAGTAAGGC
1 GGTGGATACAAGCCGAAAGGACTGGAGTAATGA
** * *
9265680 GGTGGATAC-AGACCGGGAGGAGTGGAGT-ACGAA
1 GGTGGATACAAG-CCGAAAGGACTGGAGTAATG-A
* * * *
9265713 GGTGGATACAGGCTGGAAGGAGTGGAGTAATGA
1 GGTGGATACAAGCCGAAAGGACTGGAGTAATGA
* *
9265746 GGTGGATACAAGCCGAAATGACTGGAGTACTGA
1 GGTGGATACAAGCCGAAAGGACTGGAGTAATGA
9265779 GGTGG
1 GGTGG
9265784 TAGTGGGCTG
Statistics
Matches: 86, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
32 3 0.03
33 80 0.93
34 3 0.03
ACGTcount: A:0.28, C:0.11, G:0.45, T:0.15
Consensus pattern (33 bp):
GGTGGATACAAGCCGAAAGGACTGGAGTAATGA
Found at i:9265772 original size:66 final size:66
Alignment explanation
Indices: 9265631--9265783 Score: 159
Period size: 66 Copynumber: 2.3 Consensus size: 66
9265621 TTGAGCCAGG
* * * * * *
9265631 AGGAATGGAGTACAGCGGTGGATACGGGCCGAGAGGAGTGGAGTAAGGCGGTGGATACAGACCGG
1 AGGACTGGAGTACTGAGGTGGATACAGGCCGAGAGGAGTGGAGTAAGGAGGTGGATACAGACCGA
*
9265696 G
66 A
* * *
9265697 AGGAGTGGAGTAC-GAAGGTGGATACAGGCTG-GAAGGAGTGGAGTAATGAGGTGGATACA-AGC
1 AGGACTGGAGTACTG-AGGTGGATACAGGCCGAG-AGGAGTGGAGTAAGGAGGTGGATACAGA-C
9265759 CGAA
63 CGAA
*
9265763 ATGACTGGAGTACTGAGGTGG
1 AGGACTGGAGTACTGAGGTGG
9265784 TAGTGGGCTG
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
65 3 0.04
66 69 0.95
67 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.44, T:0.15
Consensus pattern (66 bp):
AGGACTGGAGTACTGAGGTGGATACAGGCCGAGAGGAGTGGAGTAAGGAGGTGGATACAGACCGA
A
Found at i:9268004 original size:51 final size:51
Alignment explanation
Indices: 9267926--9268136 Score: 352
Period size: 51 Copynumber: 4.2 Consensus size: 51
9267916 ACTTCTGATC
*
9267926 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
9267977 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
*
9268028 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* * *
9268079 AGTGATAAGT-ATAAGTGGTAGTTTTAGTTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
9268129 AGTGATAA
1 AGTGATAA
9268137 ATGTGATCAA
Statistics
Matches: 150, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 45 0.30
51 105 0.70
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (51 bp):
AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
Found at i:9268088 original size:102 final size:101
Alignment explanation
Indices: 9267926--9268139 Score: 392
Period size: 102 Copynumber: 2.1 Consensus size: 101
9267916 ACTTCTGATC
* *
9267926 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGTGATA
1 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGT-ATA
9267991 AGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
65 AGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
9268028 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGTATAA
1 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGTATAA
*
9268093 GTGGTAGTTTTAGTTACACTTATCTGATCAGTGACA
66 GTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
9268129 AGTGATAAATG
1 AGTGATAAATG
9268140 TGATCAATGT
Statistics
Matches: 109, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
101 50 0.46
102 59 0.54
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (101 bp):
AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGTATAA
GTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
Found at i:9271573 original size:60 final size:60
Alignment explanation
Indices: 9271494--9271677 Score: 323
Period size: 60 Copynumber: 3.1 Consensus size: 60
9271484 AATACTAAAC
* *
9271494 TAAACACAACAACTTATAACATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTA
1 TAAACACAAAAATTTATAACATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTA
*
9271554 TAAACATAAAAATTTATAACATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTA
1 TAAACACAAAAATTTATAACATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTA
* *
9271614 GAAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
1 TAAACACAAAAATTTATAACATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTA
9271674 TAAA
1 TAAA
9271678 AAAATTACAT
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 117 1.00
ACGTcount: A:0.55, C:0.11, G:0.01, T:0.34
Consensus pattern (60 bp):
TAAACACAAAAATTTATAACATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTA
Found at i:9271584 original size:27 final size:27
Alignment explanation
Indices: 9271554--9271644 Score: 67
Period size: 27 Copynumber: 3.1 Consensus size: 27
9271544 AAAATAATTA
9271554 TAAACATAAAAATTTATAACATAATCC
1 TAAACATAAAAATTTATAACATAATCC
* **
9271581 TAAATTACTAATAAATTAATTT-TAAAATAATTA
1 T-AA--AC--ATAAA--AATTTATAACATAATCC
* *
9271614 GAAACACAAAAATTTATAACATAATCC
1 TAAACATAAAAATTTATAACATAATCC
9271641 TAAA
1 TAAA
9271645 TTACTAACAA
Statistics
Matches: 47, Mismatches: 9, Indels: 16
0.65 0.12 0.22
Matches are distributed among these distances:
26 5 0.11
27 12 0.26
28 6 0.13
30 4 0.09
32 7 0.15
33 8 0.17
34 5 0.11
ACGTcount: A:0.56, C:0.11, G:0.01, T:0.32
Consensus pattern (27 bp):
TAAACATAAAAATTTATAACATAATCC
Found at i:9272563 original size:13 final size:14
Alignment explanation
Indices: 9272547--9272588 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
9272537 TCTAAATTTT
9272547 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
9272560 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
9272575 ATTTTAAATAATAT
1 ATTTT-AATAATAT
9272589 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Done.