Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 300 of 325
Found at i:97721491 original size:51 final size:51
Alignment explanation
Indices: 97721436--97721539 Score: 120
Period size: 51 Copynumber: 2.0 Consensus size: 51
97721426 TCAAAGTTTT
* * * * *
97721436 CACATTTTGTCAA-TATGGTTATAATTTAACAAATTTAGCCTGTAACATTTA
1 CACATTCTGTCAACT-TAGTTATAATTTAACAAATTTAACATGTAAAATTTA
* * *
97721487 CACATTCTGTCAACTTAGTTTTGATTTAATAAATTTAACATGTAAAATTTA
1 CACATTCTGTCAACTTAGTTATAATTTAACAAATTTAACATGTAAAATTTA
97721538 CA
1 CA
97721540 TAAGATATGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
51 43 0.98
52 1 0.02
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (51 bp):
CACATTCTGTCAACTTAGTTATAATTTAACAAATTTAACATGTAAAATTTA
Found at i:97722811 original size:12 final size:12
Alignment explanation
Indices: 97722794--97722826 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
97722784 TACGGGAAAA
97722794 TATAAAAATAAT
1 TATAAAAATAAT
97722806 TATAAAAA-AAT
1 TATAAAAATAAT
*
97722817 TATTAAAATA
1 TATAAAAATA
97722827 TTAAAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
TATAAAAATAAT
Found at i:97722925 original size:9 final size:9
Alignment explanation
Indices: 97722900--97722929 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
97722890 TAATTATAAA
97722900 AAAATTATT
1 AAAATTATT
97722909 AAAA-TATT
1 AAAATTATT
97722917 AAAATTATT
1 AAAATTATT
97722926 AAAA
1 AAAA
97722930 CAAATGTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
AAAATTATT
Found at i:97723404 original size:83 final size:85
Alignment explanation
Indices: 97723317--97723473 Score: 210
Period size: 87 Copynumber: 1.8 Consensus size: 85
97723307 AGATGGCTAC
* * * * *
97723317 AGTGTAATTT-TACTATATA-TTAATTTATAACTTCTTTATTTATTAGAGGATTGAATTGAAAAT
1 AGTGTAATTTATAATATATAGTTAAATTATAACTTCTGTATTTATAAGAGGATTAAATTGAAAAT
97723380 TTTTCATTTTGGGAGACTAA
66 TTTTCATTTTGGGAGACTAA
**
97723400 AGTGTAATTTCATAATATATATGTTAAATTATAGTTTCTGTATTTATAAGAGGATTAAATTGAAA
1 AGTGTAATTT-ATAATATATA-GTTAAATTATAACTTCTGTATTTATAAGAGGATTAAATTGAAA
*
97723465 TTTTTTCAT
64 ATTTTTCAT
97723474 CCTGGGAGGG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
83 10 0.16
85 8 0.13
87 44 0.71
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.47
Consensus pattern (85 bp):
AGTGTAATTTATAATATATAGTTAAATTATAACTTCTGTATTTATAAGAGGATTAAATTGAAAAT
TTTTCATTTTGGGAGACTAA
Found at i:97728193 original size:54 final size:54
Alignment explanation
Indices: 97728111--97728607 Score: 399
Period size: 54 Copynumber: 9.3 Consensus size: 54
97728101 TCTTAACCAG
* * *
97728111 TTTAAGATCGCAACCTTATACTTACAAGATTTTCCAAATCTTGTGGCTCACCGA
1 TTTAAGATCGCAACCTTATACTTACAAGATTTTTCAAATCTTGCGGCTCGCCGA
* * * * *
97728165 TTTAAGATCGCAGCCTTACACTTACAAGATTTTTCAAATCTTGCGGTTTGTCGA
1 TTTAAGATCGCAACCTTATACTTACAAGATTTTTCAAATCTTGCGGCTCGCCGA
* *** * * *
97728219 TTTAAGATCACAGTATTATACTTTCAAGATTTTTC-AATCTTGGGGCTCGCCTA
1 TTTAAGATCGCAACCTTATACTTACAAGATTTTTCAAATCTTGCGGCTCGCCGA
* * * *** * *
97728272 ATTAAGATCACAACCTTATACTTACAGGATTTTTCAAATCTTGCATTTTGTCGA
1 TTTAAGATCGCAACCTTATACTTACAAGATTTTTCAAATCTTGCGGCTCGCCGA
* * * ** * * *** *
97728326 TTTAAGATCGCAGCCTTATATTTACATGATTTTTTGAATCTTGTGGTTTTTCAA
1 TTTAAGATCGCAACCTTATACTTACAAGATTTTTCAAATCTTGCGGCTCGCCGA
* * *
97728380 TTTAAGAACGCAACCTTATACTTACAAGATTTTTCGAATCTTGCAGCTCGCCGA
1 TTTAAGATCGCAACCTTATACTTACAAGATTTTTCAAATCTTGCGGCTCGCCGA
** * * * ***** * *
97728434 TTTAAGATCATAACCTTATACTTACAAGATTTTACGAATATTTTAATTTGTCGA
1 TTTAAGATCGCAACCTTATACTTACAAGATTTTTCAAATCTTGCGGCTCGCCGA
* * * * * * *
97728488 TTTAAGATCACATCCTTATACTTTCAAGATTTTT-GAATCTTGCGGCTTGTCAA
1 TTTAAGATCGCAACCTTATACTTACAAGATTTTTCAAATCTTGCGGCTCGCCGA
* * * * * *
97728541 ATTAAGATCCCAGCCTTATACTTACAAGATTTCT-AGAATCTTTCAG-TCGCCGA
1 TTTAAGATCGCAACCTTATACTTACAAGATTTTTCA-AATCTTGCGGCTCGCCGA
97728594 TTTAAGATCGCAAC
1 TTTAAGATCGCAAC
97728608 TTTCTCATGC
Statistics
Matches: 350, Mismatches: 91, Indels: 5
0.78 0.20 0.01
Matches are distributed among these distances:
53 98 0.28
54 252 0.72
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (54 bp):
TTTAAGATCGCAACCTTATACTTACAAGATTTTTCAAATCTTGCGGCTCGCCGA
Found at i:97728385 original size:161 final size:162
Alignment explanation
Indices: 97728112--97728607 Score: 559
Period size: 161 Copynumber: 3.1 Consensus size: 162
97728102 CTTAACCAGT
* * *** ***
97728112 TTAAGATCGCAACCTTATACTTACAAGATTTTCCAAATCTTGTGGCTCACCGATTTAAGATCGCA
1 TTAAGATCACAACCTTATACTTACAAGATTTTACAAATCTTGTAATTTGTCGATTTAAGATCGCA
* * ** * **
97728177 GCCTTACACTTACAAGATTTTTCAAATCTTGCGGTTTGTCGATTTAAGATCACAGTATTATACTT
66 GCCTTATATTTACAAGATTTTTTGAATCTTGCGGTTTGTCAATTTAAGATCACAGCCTTATACTT
* ** *
97728242 TCAAGATTTTTC-AATCTTGGGGCTCGCCTAA
131 ACAAGATTTTTCGAATCTTGCAGCTCGCCGAA
* * * *
97728273 TTAAGATCACAACCTTATACTTACAGGATTTTTCAAATCTTGCATTTTGTCGATTTAAGATCGCA
1 TTAAGATCACAACCTTATACTTACAAGATTTTACAAATCTTGTAATTTGTCGATTTAAGATCGCA
* * * * * *
97728338 GCCTTATATTTACATGATTTTTTGAATCTTGTGGTTTTTCAATTTAAGAACGCAACCTTATACTT
66 GCCTTATATTTACAAGATTTTTTGAATCTTGCGGTTTGTCAATTTAAGATCACAGCCTTATACTT
*
97728403 ACAAGATTTTTCGAATCTTGCAGCTCGCCGAT
131 ACAAGATTTTTCGAATCTTGCAGCTCGCCGAA
* * * * *
97728435 TTAAGATCATAACCTTATACTTACAAGATTTTACGAATATTTTAATTTGTCGATTTAAGATCACA
1 TTAAGATCACAACCTTATACTTACAAGATTTTACAAATCTTGTAATTTGTCGATTTAAGATCGCA
* * * *
97728500 TCCTTATACTTT-CAAGA-TTTTTGAATCTTGCGGCTTGTCAAATTAAGATCCCAGCCTTATACT
66 GCCTTATA-TTTACAAGATTTTTTGAATCTTGCGGTTTGTCAATTTAAGATCACAGCCTTATACT
* * * *
97728563 TACAAGATTTCTAGAATCTTTCAG-TCGCCGAT
130 TACAAGATTTTTCGAATCTTGCAGCTCGCCGAA
*
97728595 TTAAGATCGCAAC
1 TTAAGATCACAAC
97728608 TTTCTCATGC
Statistics
Matches: 282, Mismatches: 51, Indels: 5
0.83 0.15 0.01
Matches are distributed among these distances:
160 19 0.07
161 178 0.63
162 82 0.29
163 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (162 bp):
TTAAGATCACAACCTTATACTTACAAGATTTTACAAATCTTGTAATTTGTCGATTTAAGATCGCA
GCCTTATATTTACAAGATTTTTTGAATCTTGCGGTTTGTCAATTTAAGATCACAGCCTTATACTT
ACAAGATTTTTCGAATCTTGCAGCTCGCCGAA
Found at i:97728732 original size:23 final size:23
Alignment explanation
Indices: 97728660--97728741 Score: 74
Period size: 23 Copynumber: 3.6 Consensus size: 23
97728650 CAGTTAGCAG
* *
97728660 TATTTTTACAATGCAATCTACAA
1 TATTTTTACAATACAATTTACAA
* * ** ** *
97728683 TATTTTTGCAACACTGTTCGCAT
1 TATTTTTACAATACAATTTACAA
97728706 TATTTTTACAATACAATTTACAA
1 TATTTTTACAATACAATTTACAA
*
97728729 TATTTTCACAATA
1 TATTTTTACAATA
97728742 AAGCTCGCAA
Statistics
Matches: 42, Mismatches: 17, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.35, C:0.17, G:0.05, T:0.43
Consensus pattern (23 bp):
TATTTTTACAATACAATTTACAA
Found at i:97728750 original size:46 final size:46
Alignment explanation
Indices: 97728660--97728755 Score: 111
Period size: 46 Copynumber: 2.1 Consensus size: 46
97728650 CAGTTAGCAG
* ** ** * *
97728660 TATTTTTACAATGCAATCTACAATATTTTTGCAACACTGTTCGCAT
1 TATTTTTACAATACAATCTACAATATTTTCACAACAAAGCTCGCAA
* *
97728706 TATTTTTACAATACAATTTACAATATTTTCACAATAAAGCTCGCAA
1 TATTTTTACAATACAATCTACAATATTTTCACAACAAAGCTCGCAA
97728752 TATT
1 TATT
97728756 ATGTAGTACC
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.41
Consensus pattern (46 bp):
TATTTTTACAATACAATCTACAATATTTTCACAACAAAGCTCGCAA
Found at i:97728978 original size:3 final size:3
Alignment explanation
Indices: 97728970--97728996 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
97728960 TAATGTTATG
97728970 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
97728997 TCAAAATTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:97729469 original size:21 final size:22
Alignment explanation
Indices: 97729425--97729469 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
97729415 CCAAAGATTT
* *
97729425 ATTATATTATAAATTCTAAAAA
1 ATTACATTATAAATACTAAAAA
*
97729447 ATTACATTATAAA-ACTAATAA
1 ATTACATTATAAATACTAAAAA
97729468 AT
1 AT
97729470 ATTAAGTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.38
Consensus pattern (22 bp):
ATTACATTATAAATACTAAAAA
Found at i:97735482 original size:46 final size:46
Alignment explanation
Indices: 97735425--97735766 Score: 587
Period size: 46 Copynumber: 7.4 Consensus size: 46
97735415 AGTGTGCTCT
* * *
97735425 CTGAAATGAAATGTGTAAGACAATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
97735471 CTGATATGAAATGTGTAAGA-CAGTGGTTAAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCA-TGGTTGAAAGATACCATGGCAAC
97735517 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
97735563 CTGATATGAAATGTGTAAGGCCATGGTTGAAAGACACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
**
97735609 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACGCCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
97735655 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
97735701 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
97735747 CTGATATGAAATGTGTAAGA
1 CTGATATGAAATGTGTAAGA
97735767 TACCATGGCA
Statistics
Matches: 283, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
45 1 0.00
46 280 0.99
47 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:97735678 original size:138 final size:134
Alignment explanation
Indices: 97735425--97735868 Score: 683
Period size: 138 Copynumber: 3.3 Consensus size: 134
97735415 AGTGTGCTCT
* * *
97735425 CTGAAATGAAATGTGTAAGACAATGGTTGAAAGATACCATGGCAGCCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
*
97735490 ACAGTGGTTAAAAGATACCATGGCAGCCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
66 ACA-TGGTT-AAAG--ACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
97735555 ATGGCAAC
127 ATGGCAAC
* *
97735563 CTGATATGAAATGTGTAAGGCCATGGTTGAAAGACACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
97735628 ACCATGGTTGAAAGACGCCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
66 A-CATGGTT-AAAGA--CCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
97735693 ATGGCAAC
127 ATGGCAAC
97735701 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
97735766 --A----T----ACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
66 ACATGGTTAAAGACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
97735821 CAAC
131 CAAC
*
97735825 CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
97735869 TCATGTCAAA
Statistics
Matches: 293, Mismatches: 10, Indels: 20
0.91 0.03 0.06
Matches are distributed among these distances:
124 99 0.34
126 1 0.00
131 1 0.00
135 1 0.00
136 1 0.00
138 188 0.64
139 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (134 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
ACATGGTTAAAGACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
CAAC
Found at i:97735772 original size:32 final size:32
Alignment explanation
Indices: 97735731--97735798 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
97735721 CCATGGTTGA
97735731 AAGATACCATGGCAACCTGATATGAAATGTGT
1 AAGATACCATGGCAACCTGATATGAAATGTGT
97735763 AAGATACCATGGCAACCTGATATGAAATGTGT
1 AAGATACCATGGCAACCTGATATGAAATGTGT
97735795 AAGA
1 AAGA
97735799 CCATGGTTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.24
Consensus pattern (32 bp):
AAGATACCATGGCAACCTGATATGAAATGTGT
Found at i:97735779 original size:78 final size:78
Alignment explanation
Indices: 97735685--97735844 Score: 320
Period size: 78 Copynumber: 2.1 Consensus size: 78
97735675 CCATGGTTGA
97735685 AAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 AAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
97735750 ATATGAAATGTGT
66 ATATGAAATGTGT
97735763 AAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 AAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
97735828 ATATGAAATGTGT
66 ATATGAAATGTGT
97735841 AAGA
1 AAGA
97735845 CCATAGTTGA
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 82 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (78 bp):
AAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
ATATGAAATGTGT
Found at i:97735790 original size:124 final size:124
Alignment explanation
Indices: 97735645--97735868 Score: 439
Period size: 124 Copynumber: 1.8 Consensus size: 124
97735635 TTGAAAGACG
97735645 CCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGA
1 CCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGA
*
97735710 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGATA
66 AATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGATA
97735769 CCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGA
1 CCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGA
97735834 AATGTGTAAGACCATAGTTGAAAGATACCATGGCA
66 AATGTGTAAGACCATAGTTGAAAGATACCATGGCA
97735869 TCATGTCAAA
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
124 99 1.00
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (124 bp):
CCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGA
AATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGATA
Found at i:97735815 original size:46 final size:46
Alignment explanation
Indices: 97735763--97735868 Score: 203
Period size: 46 Copynumber: 2.3 Consensus size: 46
97735753 TGAAATGTGT
*
97735763 AAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGA
1 AAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATAGTTGA
97735809 AAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATAGTTGA
1 AAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATAGTTGA
97735855 AAGATACCATGGCA
1 AAGATACCATGGCA
97735869 TCATGTCAAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 59 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.23
Consensus pattern (46 bp):
AAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATAGTTGA
Found at i:97736119 original size:18 final size:17
Alignment explanation
Indices: 97736089--97736122 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
97736079 ATGATGGAGC
*
97736089 ATGAAATATTGATATAA
1 ATGAAATAATGATATAA
97736106 ATGAAATGAATGATATA
1 ATGAAAT-AATGATATA
97736123 TGCTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (17 bp):
ATGAAATAATGATATAA
Found at i:97741992 original size:31 final size:30
Alignment explanation
Indices: 97741922--97741993 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
97741912 TTTAATAGTC
* *
97741922 TATATTTTTATAATTTTTAAAAAATTAAAT
1 TATAATTTTATAATTTTTAAAAAATTAAAA
* *
97741952 TA-AATTTTTATTATTTTTAAAAAGGTTAAAA
1 TATAA-TTTTATAATTTTTAAAAA-ATTAAAA
97741983 TATAATTTTAT
1 TATAATTTTAT
97741994 CTTTATTAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 1 0.03
30 19 0.54
31 13 0.37
32 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (30 bp):
TATAATTTTATAATTTTTAAAAAATTAAAA
Found at i:97746072 original size:11 final size:11
Alignment explanation
Indices: 97746056--97746080 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
97746046 GTTACACTTC
97746056 AAAAAAATTAA
1 AAAAAAATTAA
97746067 AAAAAAATTAA
1 AAAAAAATTAA
97746078 AAA
1 AAA
97746081 TTGTTAAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAAAATTAA
Found at i:97750285 original size:9 final size:9
Alignment explanation
Indices: 97750268--97750357 Score: 57
Period size: 9 Copynumber: 10.2 Consensus size: 9
97750258 TAAAAGTATG
*
97750268 TACACAATA
1 TACATAATA
97750277 TACATAATA
1 TACATAATA
*
97750286 TA-TTAAATA
1 TACAT-AATA
*
97750295 TATATAATA
1 TACATAATA
**
97750304 TTTATAA-A
1 TACATAATA
97750312 -A-AT-ATA
1 TACATAATA
97750318 TACATAATA
1 TACATAATA
97750327 TACATAA-A
1 TACATAATA
97750335 GTACATATATA
1 -TACATA-ATA
97750346 TACATATATA
1 TACATA-ATA
97750356 TA
1 TA
97750358 ATACTTAAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 17
0.75 0.06 0.19
Matches are distributed among these distances:
5 1 0.01
6 3 0.04
7 1 0.01
8 5 0.07
9 42 0.63
10 14 0.21
11 1 0.01
ACGTcount: A:0.54, C:0.08, G:0.01, T:0.37
Consensus pattern (9 bp):
TACATAATA
Found at i:97757788 original size:20 final size:20
Alignment explanation
Indices: 97757763--97757803 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
97757753 GCTTATAAGG
97757763 AAAGAAACAATCATTCAAGT
1 AAAGAAACAATCATTCAAGT
97757783 AAAGAAACAATCATTCAAGT
1 AAAGAAACAATCATTCAAGT
97757803 A
1 A
97757804 CTTCAACTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.15, G:0.10, T:0.20
Consensus pattern (20 bp):
AAAGAAACAATCATTCAAGT
Found at i:97766579 original size:13 final size:13
Alignment explanation
Indices: 97766561--97766586 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97766551 GTAGACACAC
97766561 GGCCGTGTGTCTA
1 GGCCGTGTGTCTA
97766574 GGCCGTGTGTCTA
1 GGCCGTGTGTCTA
97766587 CCATATGGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.23, G:0.38, T:0.31
Consensus pattern (13 bp):
GGCCGTGTGTCTA
Found at i:97780501 original size:3 final size:3
Alignment explanation
Indices: 97780493--97780539 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
97780483 AACCAGTCTG
97780493 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
97780540 GTGATGAGCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:97783726 original size:17 final size:16
Alignment explanation
Indices: 97783683--97783731 Score: 50
Period size: 17 Copynumber: 3.2 Consensus size: 16
97783673 TCAAATATGG
97783683 TTAAA-AATTTAA-TT
1 TTAAATAATTTAATTT
*
97783697 TT-AATATTTTAATTT
1 TTAAATAATTTAATTT
*
97783712 TTAACATAATTTAATAT
1 TTAA-ATAATTTAATTT
97783729 TTA
1 TTA
97783732 TATTTTTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 2 0.07
14 8 0.29
15 4 0.14
16 1 0.04
17 13 0.46
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (16 bp):
TTAAATAATTTAATTT
Found at i:97786351 original size:9 final size:9
Alignment explanation
Indices: 97786323--97786371 Score: 55
Period size: 9 Copynumber: 5.3 Consensus size: 9
97786313 GATATCATCT
97786323 AAAATTTATGA
1 AAAATTTA--A
*
97786334 AACATTTAA
1 AAAATTTAA
97786343 AAAATTT-A
1 AAAATTTAA
*
97786351 AAATTTTAA
1 AAAATTTAA
97786360 AAAATTTAA
1 AAAATTTAA
97786369 AAA
1 AAA
97786372 TTTCACAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
8 7 0.21
9 19 0.58
11 7 0.21
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (9 bp):
AAAATTTAA
Found at i:97786360 original size:17 final size:17
Alignment explanation
Indices: 97786338--97786370 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
97786328 TTATGAAACA
97786338 TTTAAAAAATTTAAAAT
1 TTTAAAAAATTTAAAAT
97786355 TTTAAAAAATTTAAAA
1 TTTAAAAAATTTAAAA
97786371 ATTTCACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTTAAAAAATTTAAAAT
Found at i:97786381 original size:10 final size:8
Alignment explanation
Indices: 97786323--97786374 Score: 50
Period size: 8 Copynumber: 5.9 Consensus size: 8
97786313 GATATCATCT
97786323 AAAATTTA
1 AAAATTTA
97786331 TGAAACATTTAA
1 --AAA-ATTT-A
97786343 AAAATTTA
1 AAAATTTA
*
97786351 AAATTTTAA
1 AAAATTT-A
97786360 AAAATTTA
1 AAAATTTA
97786368 AAAATTT
1 AAAATTT
97786375 CACAAAAATC
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
8 15 0.41
9 11 0.30
10 6 0.16
11 4 0.11
12 1 0.03
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (8 bp):
AAAATTTA
Found at i:97786974 original size:29 final size:30
Alignment explanation
Indices: 97786936--97787008 Score: 71
Period size: 28 Copynumber: 2.5 Consensus size: 30
97786926 TTTTTAGTCT
* * *
97786936 AAATTTTAAAATATTAATATCAATA-TTAC
1 AAATTATAAAATATTAAGATCAAGATTTAC
* *
97786965 AAATTAT-AAACACTAAGATCAAGATTTAC
1 AAATTATAAAATATTAAGATCAAGATTTAC
97786994 AAA-TATTAAAATATT
1 AAATTA-TAAAATATT
97787009 CCAATCCTCA
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
28 15 0.44
29 14 0.41
30 5 0.15
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.36
Consensus pattern (30 bp):
AAATTATAAAATATTAAGATCAAGATTTAC
Found at i:97789493 original size:43 final size:43
Alignment explanation
Indices: 97789405--97789549 Score: 211
Period size: 43 Copynumber: 3.4 Consensus size: 43
97789395 CAAAACTTAG
*
97789405 AAAAAACGCCGCAAAAAACCAGGACTTTTAGCGGCGCTTTT-T
1 AAAAAACGCCGCTAAAAACCAGGACTTTTAGCGGCGCTTTTCT
* *
97789447 AAAAAACGCCGTTAAAAACCAGGACTTTTAGCGGCACTTTTCT
1 AAAAAACGCCGCTAAAAACCAGGACTTTTAGCGGCGCTTTTCT
* * *
97789490 AAAAAACGCCGCTAAAGACCAGGACTTTTCGCGGCGCTTTTCC
1 AAAAAACGCCGCTAAAAACCAGGACTTTTAGCGGCGCTTTTCT
* *
97789533 CACAAACGCCGCTAAAA
1 AAAAAACGCCGCTAAAA
97789550 GTCATAAATT
Statistics
Matches: 91, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 38 0.42
43 53 0.58
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (43 bp):
AAAAAACGCCGCTAAAAACCAGGACTTTTAGCGGCGCTTTTCT
Found at i:97789676 original size:12 final size:12
Alignment explanation
Indices: 97789659--97789688 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
97789649 ATAAATATAA
97789659 AAAATTCCTATT
1 AAAATTCCTATT
97789671 AAAATT-CTATT
1 AAAATTCCTATT
97789682 AAAATTC
1 AAAATTC
97789689 ATTATCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (12 bp):
AAAATTCCTATT
Found at i:97789682 original size:11 final size:11
Alignment explanation
Indices: 97789659--97789692 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
97789649 ATAAATATAA
97789659 AAAATTCCTATT
1 AAAATT-CTATT
97789671 AAAATTCTATT
1 AAAATTCTATT
97789682 AAAATTC-ATT
1 AAAATTCTATT
97789692 A
1 A
97789693 TCAAATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 4 0.18
11 12 0.55
12 6 0.27
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (11 bp):
AAAATTCTATT
Found at i:97789755 original size:34 final size:34
Alignment explanation
Indices: 97789717--97789781 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
97789707 CTATTAAAAT
*
97789717 TTTAACTTTAAAACT-AAATACAAAAATTAATGAA
1 TTTAAATTTAAAACTAAAATA-AAAAATTAATGAA
* *
97789751 TTTAAATTTAAAATTAAAATAATAAATTAAT
1 TTTAAATTTAAAACTAAAATAAAAAATTAAT
97789782 AACACAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 22 0.81
35 5 0.19
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (34 bp):
TTTAAATTTAAAACTAAAATAAAAAATTAATGAA
Found at i:97793176 original size:16 final size:16
Alignment explanation
Indices: 97793155--97793223 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
97793145 TTTGGTTCGC
97793155 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
97793171 TGTATTGAATTAGAAG
1 TGTATTGGATTAGAGG
97793187 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
97793204 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
97793220 TGTA
1 TGTA
97793224 ATAGCTAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
16 34 0.71
17 14 0.29
ACGTcount: A:0.28, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:97793201 original size:33 final size:32
Alignment explanation
Indices: 97793155--97793223 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
97793145 TTTGGTTCGC
97793155 TGTATTGGATTAGAGGTGTATTGAATTAGAAG
1 TGTATTGGATTAGAGGTGTATTGAATTAGAAG
* *
97793187 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGAATTAGAAG
97793220 TGTA
1 TGTA
97793224 ATAGCTAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.00, G:0.35, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGAATTAGAAG
Found at i:97793288 original size:44 final size:45
Alignment explanation
Indices: 97793204--97793294 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
97793194 GGATTAGAGG
* * *
97793204 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
97793249 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
97793293 TG
1 TG
97793295 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:97793479 original size:18 final size:17
Alignment explanation
Indices: 97793458--97793492 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
97793448 TTATTATTAA
*
97793458 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
97793476 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
97793493 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:97793576 original size:120 final size:119
Alignment explanation
Indices: 97793434--97793701 Score: 446
Period size: 120 Copynumber: 2.2 Consensus size: 119
97793424 AAATTTAATC
97793434 ATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA
1 ATATTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA
* * *
97793499 TAATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAT
65 TAATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAT
*
97793554 ATAATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAA
1 AT-ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA
* * *
97793619 TATTAAATATTCTTATATGAATTTACTAAAATTATAATATATAATAGTATAAAAT
65 TAATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAT
*
97793674 ATATATAACATAATTATTATTAAATATA
1 ATATTTAACATAATTATTATTAAATATA
97793702 ATCAATTTTT
Statistics
Matches: 139, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
119 25 0.18
120 110 0.79
121 4 0.03
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (119 bp):
ATATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAAT
AATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAT
Found at i:97793599 original size:18 final size:17
Alignment explanation
Indices: 97793576--97793612 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
97793566 AATTATTATT
97793576 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
97793592 AAATATATGATTTAATA
1 AAATATATGATTTAATA
97793609 AAAT
1 AAAT
97793613 TCTTAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:97793671 original size:61 final size:61
Alignment explanation
Indices: 97793467--97793663 Score: 188
Period size: 61 Copynumber: 3.3 Consensus size: 61
97793457 AATATATTTT
* * *
97793467 AATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCA
1 AATTAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAA
* * * * * * * * * **
97793528 AATCATAATATATGATACT-ATAAAA-T-ATAAT-TTAACATAATTATTAT-TAAATATATTTT
1 AATTAAAATATATAAT-TTAATAAAATTCTTAATATTAA-AT-ATTCTTATATGAATTTACTAA
*
97793587 AATTAAAATATATGATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAA
1 AATTAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAA
*
97793648 AATTATAATATATAAT
1 AATTAAAATATATAAT
97793664 AGTATAAAAT
Statistics
Matches: 103, Mismatches: 25, Indels: 16
0.72 0.17 0.11
Matches are distributed among these distances:
58 3 0.03
59 33 0.32
60 16 0.16
61 46 0.45
62 5 0.05
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.44
Consensus pattern (61 bp):
AATTAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAA
Found at i:97796162 original size:18 final size:18
Alignment explanation
Indices: 97796139--97796173 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
97796129 GTTTCAGACG
97796139 TGAGAAAGAAATGAGAAA
1 TGAGAAAGAAATGAGAAA
97796157 TGAGAAAGAAATGAGAA
1 TGAGAAAGAAATGAGAA
97796174 GACGGCTGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.29, T:0.11
Consensus pattern (18 bp):
TGAGAAAGAAATGAGAAA
Found at i:97796633 original size:15 final size:14
Alignment explanation
Indices: 97796613--97796642 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
97796603 AAAATATTAA
97796613 ATTTTTAAGTTTTTT
1 ATTTTTAA-TTTTTT
97796628 ATTTTTAATTTTTT
1 ATTTTTAATTTTTT
97796642 A
1 A
97796643 AATTTTTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (14 bp):
ATTTTTAATTTTTT
Found at i:97796668 original size:9 final size:8
Alignment explanation
Indices: 97796609--97796675 Score: 55
Period size: 8 Copynumber: 7.9 Consensus size: 8
97796599 AACTAAAATA
97796609 TTAAATTT
1 TTAAATTT
*
97796617 TTAAGTTT
1 TTAAATTT
*
97796625 TT-TATTT
1 TTAAATTT
*
97796632 TTAATTTT
1 TTAAATTT
97796640 TTAAATTTT
1 TTAAA-TTT
97796649 TATGAAGATTT
1 T-T-AA-ATTT
97796660 TTATAATTT
1 TTA-AATTT
97796669 TTAAATT
1 TTAAATT
97796676 ATCATATAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
7 5 0.11
8 20 0.43
9 12 0.26
10 3 0.06
11 6 0.13
12 1 0.02
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.64
Consensus pattern (8 bp):
TTAAATTT
Found at i:97797306 original size:7 final size:7
Alignment explanation
Indices: 97797266--97797392 Score: 89
Period size: 7 Copynumber: 17.9 Consensus size: 7
97797256 ACTAACTAAT
97797266 CTAAACC
1 CTAAACC
*
97797273 CGAAACTC
1 CTAAAC-C
*
97797281 CTAATCC
1 CTAAACC
*
97797288 CTAAACA
1 CTAAACC
*
97797295 TTAAACC
1 CTAAACC
*
97797302 CTAAAAC
1 CTAAACC
*
97797309 ATAAACC
1 CTAAACC
*
97797316 CTGAACC
1 CTAAACC
97797323 CTAAACC
1 CTAAACC
97797330 CTAAACC
1 CTAAACC
97797337 CTAAACCC
1 CTAAA-CC
*
97797345 CT-TACC
1 CTAAACC
*
97797351 CTTAACCC
1 C-TAAACC
97797359 CT-AACAC
1 CTAAAC-C
*
97797366 CTAAATC
1 CTAAACC
*
97797373 TTAAACC
1 CTAAACC
97797380 CT-AACC
1 CTAAACC
97797386 CTTAAAC
1 C-TAAAC
97797393 TATCTTTAAA
Statistics
Matches: 90, Mismatches: 22, Indels: 15
0.71 0.17 0.12
Matches are distributed among these distances:
6 10 0.11
7 63 0.70
8 17 0.19
ACGTcount: A:0.40, C:0.39, G:0.02, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:97797423 original size:15 final size:15
Alignment explanation
Indices: 97797399--97797433 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
97797389 AAACTATCTT
*
97797399 TAAA-CCATAATCCC
1 TAAACCCATAATCCA
97797413 TAAACCCATAATCCA
1 TAAACCCATAATCCA
97797428 TAAACC
1 TAAACC
97797434 TTAAAATAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.46, C:0.34, G:0.00, T:0.20
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:97797583 original size:40 final size:40
Alignment explanation
Indices: 97797473--97797567 Score: 163
Period size: 41 Copynumber: 2.4 Consensus size: 40
97797463 AGTTGGTATC
*
97797473 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTA
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GTT
*
97797514 TTTAGCGGCGTTTCACCAAAAGCGCCGCTAATGCTCTGTT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTT
97797554 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
97797568 TGTCAAAACA
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
40 15 0.29
41 36 0.71
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (40 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTT
Found at i:97797598 original size:41 final size:41
Alignment explanation
Indices: 97797473--97797598 Score: 159
Period size: 41 Copynumber: 3.1 Consensus size: 41
97797463 AGTTGGTATC
97797473 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTG-GT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTGT
*
97797513 ATTTAGCGGCGTTTCACCAAAAGCGCCGCTAATGCTCTGT-T
1 -TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTGT
** * * *
97797554 TTTAGCGGCGTTTTTGTCAAAA-CACCGCTATTGCTTTGTGT
1 TTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCTCTGTGT
97797595 TTTA
1 TTTA
97797599 CAATTTTTGC
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
40 24 0.32
41 51 0.68
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGTGT
Found at i:97801714 original size:4 final size:4
Alignment explanation
Indices: 97801705--97801731 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
97801695 GGAATAAACA
97801705 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
97801732 ACAGTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:97802573 original size:25 final size:26
Alignment explanation
Indices: 97802545--97802594 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
97802535 TGTAGTAAAA
*
97802545 AATAGAAAGA-AACTAA-AAAAAATCG
1 AATAGAAA-ACAAATAAGAAAAAATCG
97802570 AATAGAAAACAAATAAGAAAAAATC
1 AATAGAAAACAAATAAGAAAAAATC
97802595 AAGATCAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 13 0.59
26 8 0.36
ACGTcount: A:0.70, C:0.08, G:0.10, T:0.12
Consensus pattern (26 bp):
AATAGAAAACAAATAAGAAAAAATCG
Found at i:97804780 original size:27 final size:28
Alignment explanation
Indices: 97804716--97804781 Score: 68
Period size: 26 Copynumber: 2.5 Consensus size: 28
97804706 TTCGTCTCTT
*
97804716 TTGTTATT-TTATTAAATATCATCATTA
1 TTGTTATTATTATTAAATATCATCAATA
* *
97804743 TT-TT-TGAATTATT-AATATCATTAATA
1 TTGTTAT-TATTATTAAATATCATCAATA
97804769 TTGTTATTATTAT
1 TTGTTATTATTAT
97804782 CATTATTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
25 1 0.03
26 15 0.48
27 14 0.45
28 1 0.03
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.58
Consensus pattern (28 bp):
TTGTTATTATTATTAAATATCATCAATA
Found at i:97817503 original size:70 final size:70
Alignment explanation
Indices: 97817336--97817496 Score: 195
Period size: 69 Copynumber: 2.3 Consensus size: 70
97817326 CAAGGAAAAT
* ** *
97817336 ACTCATATTGCGAGAGATGAGTTGAGCCTCAGACACGTTGAGGTATTTTTTAAATTTTTTTTTCA
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCCGAGGTATTTTTTAAATTTTGTTTTCA
97817401 AATCA
66 AATCA
* * *
97817406 ACTCATATTGCGAGA-GTGAGTTGAGCCTCGGGGCACGCCGAGGTA-TTTTT-AGTTTATGTTTT
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGCCGAGGTATTTTTTAAATTT-TGTTTT
**
97817468 -AAATTG
64 CAAATCA
97817474 ACTCATATTGCGAGAGGTGAGTT
1 ACTCATATTGCGAGAGGTGAGTT
97817497 TAAGCCTTTT
Statistics
Matches: 79, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
68 23 0.29
69 30 0.38
70 26 0.33
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.36
Consensus pattern (70 bp):
ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCCGAGGTATTTTTTAAATTTTGTTTTCA
AATCA
Found at i:97817625 original size:122 final size:120
Alignment explanation
Indices: 97817383--97817619 Score: 280
Period size: 121 Copynumber: 1.9 Consensus size: 120
97817373 TTGAGGTATT
* * *
97817383 TTTTAAATTTTTTTTTCAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCGGGGCACGCCGAG
1 TTTTAAATTTTTTTTTCAAATCAACTCATATTGCGAGAGTGAGTTGAACCTCAGGACACGCCGAG
* * * * * * **
97817448 GTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTTAAGCC
66 GTAATTTCAATTTATGTTTTAAAATCACTCATATTACGAGAAATGAGTTTAAGCC
* * *
97817503 TTTTAATTTTTATTTTTCAAAATCAACTCATATTGCTAGAGTGAGTT-AACCTCAGGACACGCTG
1 TTTTAAATTTT-TTTTTC-AAATCAACTCATATTGCGAGAGTGAGTTGAACCTCAGGACACGCCG
*
97817567 AGGTAATTTCAATTTCTGTTGTTAAAAAATCACTCATATTAC-AGAAATGAGTT
64 AGGTAATTTCAATTTATGTT-TT--AAAATCACTCATATTACGAGAAATGAGTT
97817620 GAGCCTCAGG
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
120 10 0.10
121 35 0.36
122 29 0.30
123 9 0.09
124 14 0.14
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.38
Consensus pattern (120 bp):
TTTTAAATTTTTTTTTCAAATCAACTCATATTGCGAGAGTGAGTTGAACCTCAGGACACGCCGAG
GTAATTTCAATTTATGTTTTAAAATCACTCATATTACGAGAAATGAGTTTAAGCC
Found at i:97817729 original size:73 final size:73
Alignment explanation
Indices: 97817521--97817850 Score: 340
Period size: 70 Copynumber: 4.5 Consensus size: 73
97817511 TTTATTTTTC
* * *
97817521 AAAATCAACTCATATTGCTAG-AGTGAGTT-AACCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTCCT
97817584 GTTGTT-AA
66 GTT-TTAAA
* * * *
97817592 AAAATC-ACTCATATTAC-AGAAATGAGTTGAGCCTCAGG-CATGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTCCT
97817654 GTTGTTAAA
66 GTT-TTAAA
* * *
97817663 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGTTGAGG-ATTTTCAATTCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTCCT
*
97817727 GTTTCAAAAAA
66 GTTT---TAAA
* * * *
97817738 AAAATCAACT-TTATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAA-T
*
97817801 TCTTGTTTTAAA
62 TCCTGTTTTAAA
*
97817813 AAAATCAAC-CATATGTGCGAGAGGTGAGTTGAG-CTCAG
1 AAAATCAACTCATAT-TGCGAGAAGTGAGTTGAGCCTCAG
97817851 ATTACACACT
Statistics
Matches: 224, Mismatches: 18, Indels: 29
0.83 0.07 0.11
Matches are distributed among these distances:
69 2 0.01
70 46 0.21
71 22 0.10
72 11 0.05
73 37 0.17
74 31 0.14
75 31 0.14
76 28 0.12
77 8 0.04
78 8 0.04
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31
Consensus pattern (73 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTCCT
GTTTTAAA
Found at i:97818144 original size:72 final size:71
Alignment explanation
Indices: 97818004--97818144 Score: 160
Period size: 72 Copynumber: 2.0 Consensus size: 71
97817994 TCAAAATCAG
** * ** **
97818004 CTCACATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTA
1 CTCACATTGCAAGAGGTGAGTTGAGCCTCGGCACACGCCGAGGTATTTTCAATTTAAGCCTTTTA
97818069 TTTCAA
66 TTTCAA
* *
97818075 CTCATATTGCGAGA-GTGAGTTGAGCCTCAGGACACACGCCGAGGTATTTTCAA-TTAAGCCTTT
1 CTCACATTGCAAGAGGTGAGTTGAGCCTC-GG-CACACGCCGAGGTATTTTCAATTTAAGCCTTT
97818138 TGATTTC
64 T-ATTTC
97818145 TGTTTTTCAA
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
70 14 0.24
71 21 0.36
72 23 0.40
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (71 bp):
CTCACATTGCAAGAGGTGAGTTGAGCCTCGGCACACGCCGAGGTATTTTCAATTTAAGCCTTTTA
TTTCAA
Found at i:97818340 original size:74 final size:75
Alignment explanation
Indices: 97818140--97818342 Score: 306
Period size: 73 Copynumber: 2.7 Consensus size: 75
97818130 AAGCCTTTTG
* * *
97818140 ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTG
1 ATTTCTGCTTTTC-AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTG
*
97818205 AGGTATTTTCA
65 AGGTAATTTCA
*
97818216 ATTTCTGCTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
1 ATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
97818279 GGTAATTTCA
66 GGTAATTTCA
*
97818289 ATTTCTG-TTGTCAAAAAAATCAACTCATATTGCGA-AAAGTGAGTTGAGCCTCAG
1 ATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAAA-TGAGTTGAGCCTCAG
97818343 TTCACATGTT
Statistics
Matches: 117, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
72 4 0.03
73 66 0.56
74 35 0.30
76 12 0.10
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (75 bp):
ATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
GGTAATTTCA
Found at i:97830977 original size:25 final size:26
Alignment explanation
Indices: 97830932--97831037 Score: 84
Period size: 25 Copynumber: 4.3 Consensus size: 26
97830922 ACACACCGCA
*
97830932 GCTCTTATG-AACGTTCT-GATATATG
1 GCTCTTCTGAAAC-TTCTCGATATATG
97830957 GCTCTTC-GAAACTTCTCGATAT-TG
1 GCTCTTCTGAAACTTCTCGATATATG
*
97830981 GCTC-TCTTAAACTTC-CTGATATATG
1 GCTCTTCTGAAACTTCTC-GATATATG
* * *
97831006 GCT-ATCTGAAGCTTCCCGAT-TAATG
1 GCTCTTCTGAAACTTCTCGATAT-ATG
97831031 GCTCTTC
1 GCTCTTC
97831038 GAAGCTACAT
Statistics
Matches: 67, Mismatches: 5, Indels: 17
0.75 0.06 0.19
Matches are distributed among these distances:
23 3 0.04
24 24 0.36
25 37 0.55
26 3 0.04
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.38
Consensus pattern (26 bp):
GCTCTTCTGAAACTTCTCGATATATG
Found at i:97831117 original size:25 final size:25
Alignment explanation
Indices: 97831088--97831151 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
97831078 GGTTTTTATG
* *
97831088 AGCTTCCTGTTATACGGCCCAGATA
1 AGCTTCCCGTTATACGGCCCACATA
* * * *
97831113 AGCTTCCCGTTACATGGCTCACATG
1 AGCTTCCCGTTATACGGCCCACATA
97831138 AGCTTCCCGTTATA
1 AGCTTCCCGTTATA
97831152 TAGCTTGAGA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.30
Consensus pattern (25 bp):
AGCTTCCCGTTATACGGCCCACATA
Found at i:97833926 original size:46 final size:46
Alignment explanation
Indices: 97833859--97834032 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
97833849 GTAACCGGCC
*
97833859 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
97833905 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
97833955 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
97833998 CCATAAGTG-ACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
97834033 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 28 0.26
46 35 0.32
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:97833979 original size:93 final size:92
Alignment explanation
Indices: 97833866--97834036 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 92
97833856 GCCCCATAAG
* *
97833866 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTG-ACTCGGACTCAACTCA
97833931 ACGAGTTCGGATGCCTAGTTACATCTCA
65 ACGAGTTCGGATGCCTAGTTACATCTCA
*
97833959 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGACTCGGACTCAACTCAA
97834024 CGAGTTCGGATGC
66 CGAGTTCGGATGC
97834037 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 30 0.40
93 45 0.60
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:97836711 original size:13 final size:13
Alignment explanation
Indices: 97836693--97836733 Score: 82
Period size: 13 Copynumber: 3.2 Consensus size: 13
97836683 CTAGAATCGA
97836693 ACCATCATCTGAC
1 ACCATCATCTGAC
97836706 ACCATCATCTGAC
1 ACCATCATCTGAC
97836719 ACCATCATCTGAC
1 ACCATCATCTGAC
97836732 AC
1 AC
97836734 TTTCAACTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.32, C:0.39, G:0.07, T:0.22
Consensus pattern (13 bp):
ACCATCATCTGAC
Found at i:97836743 original size:26 final size:26
Alignment explanation
Indices: 97836693--97836743 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
97836683 CTAGAATCGA
*
97836693 ACCATCATCTGACACCATCATCTGAC
1 ACCATCATCTGACACCATCAACTGAC
**
97836719 ACCATCATCTGACACTTTCAACTGA
1 ACCATCATCTGACACCATCAACTGA
97836744 GTGTTCATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.35, G:0.08, T:0.25
Consensus pattern (26 bp):
ACCATCATCTGACACCATCAACTGAC
Found at i:97841421 original size:93 final size:93
Alignment explanation
Indices: 97841308--97841479 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
97841298 CGCCCATAAG
* *
97841308 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97841373 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
97841401 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97841466 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
97841480 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:97841476 original size:46 final size:46
Alignment explanation
Indices: 97841301--97841476 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
97841291 TGTAACCCGC
* * *
97841301 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
97841347 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
97841397 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
97841440 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
97841477 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:97848820 original size:15 final size:15
Alignment explanation
Indices: 97848800--97848829 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
97848790 TATAACAGGA
97848800 AATAAACTTACCATT
1 AATAAACTTACCATT
97848815 AATAAACTTACCATT
1 AATAAACTTACCATT
97848830 CATTTACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (15 bp):
AATAAACTTACCATT
Found at i:97849389 original size:26 final size:26
Alignment explanation
Indices: 97849327--97849412 Score: 88
Period size: 26 Copynumber: 3.4 Consensus size: 26
97849317 TTAAGCAAGC
* *
97849327 TATATCGGGAAGCTC-TAGAGAG-CT
1 TATATCGGGAAGCTCACAAAGAGCCT
* *
97849351 AATATCAGGAAGCTCACAAAGAGCCT
1 TATATCGGGAAGCTCACAAAGAGCCT
**
97849377 T-TAATCGGGAAGCTCATGAAGAGCCT
1 TAT-ATCGGGAAGCTCACAAAGAGCCT
97849403 TATATCGGGA
1 TATATCGGGA
97849413 CGTTCATAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
24 13 0.26
25 6 0.12
26 30 0.60
27 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.22
Consensus pattern (26 bp):
TATATCGGGAAGCTCACAAAGAGCCT
Found at i:97849419 original size:26 final size:25
Alignment explanation
Indices: 97849358--97849425 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 25
97849348 GCTAATATCA
*
97849358 GGAAGCTCACAAAGAGCCTTTAATCG
1 GGAAGCTCA-TAAGAGCCTTTAATCG
97849384 GGAAGCTCATGAAGAGCC-TTATATCG
1 GGAAGCTCAT-AAGAGCCTTTA-ATCG
* *
97849410 GGACGTTCATAAGAGC
1 GGAAGCTCATAAGAGC
97849426 TGTGGTGTGT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
25 9 0.24
26 28 0.76
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (25 bp):
GGAAGCTCATAAGAGCCTTTAATCG
Found at i:97851483 original size:14 final size:14
Alignment explanation
Indices: 97851464--97851499 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
97851454 ATTTTGGGGA
* *
97851464 GGGGGAATTGATTT
1 GGGGGAAATGAATT
97851478 GGGGGAAATGAATT
1 GGGGGAAATGAATT
97851492 GGGGGAAA
1 GGGGGAAA
97851500 AGGGGAAGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.47, T:0.22
Consensus pattern (14 bp):
GGGGGAAATGAATT
Found at i:97856366 original size:4 final size:4
Alignment explanation
Indices: 97856357--97856402 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
97856347 CATGAAAGTT
* * * *
97856357 TTTA TTTA TTTA TTTA TGTA TTTA TTTA TTCA TTGA TTCA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
97856403 CTTTTTGTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:97856482 original size:15 final size:15
Alignment explanation
Indices: 97856462--97856514 Score: 65
Period size: 15 Copynumber: 3.6 Consensus size: 15
97856452 TTTTGTTATT
97856462 ATTATTATTATTCTC
1 ATTATTATTATTCTC
* *
97856477 ATTATTATTATTGTT
1 ATTATTATTATTCTC
97856492 ATTATTTATT-TTC-C
1 ATTA-TTATTATTCTC
97856506 ATTATTATT
1 ATTATTATT
97856515 TAATTAGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 5 0.15
14 4 0.12
15 19 0.58
16 5 0.15
ACGTcount: A:0.26, C:0.08, G:0.02, T:0.64
Consensus pattern (15 bp):
ATTATTATTATTCTC
Found at i:97856514 original size:3 final size:3
Alignment explanation
Indices: 97856457--97856497 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
97856447 GCACATTTTG
* * *
97856457 TTA TTA TTA TTA TTA TTC TCA TTA TTA TTA TTG TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
97856498 TATTTTCCAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:97857996 original size:25 final size:25
Alignment explanation
Indices: 97857927--97857998 Score: 99
Period size: 25 Copynumber: 2.9 Consensus size: 25
97857917 TATGTTTCTT
** *
97857927 ATGAGCTTCCCGTTATACAGCTCAG
1 ATGAGCTTCCCGTTATATGGCTCAC
* *
97857952 ATAAGCTTCCCGTTACATGGCTCAC
1 ATGAGCTTCCCGTTATATGGCTCAC
97857977 ATGAGCTTCCCGTTATATGGCT
1 ATGAGCTTCCCGTTATATGGCT
97857999 TGAGAGAGAG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATATGGCTCAC
Found at i:97858016 original size:27 final size:25
Alignment explanation
Indices: 97857929--97858026 Score: 92
Period size: 25 Copynumber: 3.8 Consensus size: 25
97857919 TGTTTCTTAT
**
97857929 GAGCTTCCCGTTATACAGCTCAGATA
1 GAGCTTCCCGTTATATGGCTCAGA-A
* * *
97857955 -AGCTTCCCGTTACATGGCTCACAT
1 GAGCTTCCCGTTATATGGCTCAGAA
*
97857979 GAGCTTCCCGTTATATGGCTTGAGAGA
1 GAGCTTCCCGTTATATGGC-TCAGA-A
97858006 GAGCTTCCCGTT-TATGTGCTC
1 GAGCTTCCCGTTATATG-GCTC
97858027 GTGTGTACTA
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
25 36 0.62
26 8 0.14
27 14 0.24
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCAGAA
Found at i:97859773 original size:19 final size:19
Alignment explanation
Indices: 97859726--97859773 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
97859716 AAATTAACAA
97859726 ATTAATAATTATATGTTAAT
1 ATTAATAA-TATATGTTAAT
* *
97859746 A-AAATTAATATTTGTTAAT
1 ATTAA-TAATATATGTTAAT
97859765 ATTAATAAT
1 ATTAATAAT
97859774 TGAATTAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 5
0.74 0.10 0.16
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (19 bp):
ATTAATAATATATGTTAAT
Found at i:97860542 original size:51 final size:51
Alignment explanation
Indices: 97860466--97860564 Score: 155
Period size: 51 Copynumber: 1.9 Consensus size: 51
97860456 TAAAAAATGA
* *
97860466 AAAAGCTTGATTAATTAAATATTGATTCTTTTTTC-AAAGCAGCCATTAATT
1 AAAAGCTTAATTAATTAAATATTGATTC-ATTTTCAAAAGCAGCCATTAATT
*
97860517 AAAAGTTTAATTAATTAAATATTGATTCATTTTCAAAAGCAGCCATTA
1 AAAAGCTTAATTAATTAAATATTGATTCATTTTCAAAAGCAGCCATTA
97860565 CATTTAACAG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 5 0.11
51 39 0.89
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.39
Consensus pattern (51 bp):
AAAAGCTTAATTAATTAAATATTGATTCATTTTCAAAAGCAGCCATTAATT
Found at i:97861910 original size:21 final size:20
Alignment explanation
Indices: 97861886--97861924 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
97861876 AAGAAGTAAA
97861886 TAAACAAAACACATTTAATAC
1 TAAACAAAACA-ATTTAATAC
* *
97861907 TAAACCAATCAATTTAAT
1 TAAACAAAACAATTTAAT
97861925 GATATAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.28
Consensus pattern (20 bp):
TAAACAAAACAATTTAATAC
Found at i:97863555 original size:45 final size:45
Alignment explanation
Indices: 97863403--97864142 Score: 321
Period size: 45 Copynumber: 15.8 Consensus size: 45
97863393 TAACTTGTAA
* * *
97863403 CTTCAATCTGCTCCACTGTAACTTCAGGGAAATAAGATTCGCTAT
1 CTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * *
97863448 CTTCAGTCTGCTCCTACTGCAACTTCAGGGAGATAAGACTCGCAACTTTTAG
1 CTTCAGTCTACTCC-ACTGCAACTTCAGGGAAATAAGATTCG---C---TAT
* * *
97863500 CTTCAATCTACTCCACTGCAACTTCAGGGAAATGAGATTCACTAT
1 CTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * * ** * **
97863545 CTTCAGTCTACTCCGCTGCAACTTTAGAGAGATAAGGCT-GGTGG
1 CTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * * *
97863589 CTTC-TTCTACTTCACTGTAACTTTAGAGAAATAAGATTCGCTAT
1 CTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * * * *
97863633 CTTTAGTCTGCTCCTACTACAACTTCAGGGAGATAAGACTCGTAACTTTTAG
1 CTTCAGTCTACTCC-ACTGCAACTTCAGGGAAATAAGATTCG---C---TAT
* * * *
97863685 CTTTAATTTACTCCACTGCAACTTCAGGGAAATGAGATTCGCTAT
1 CTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * * ** *
97863730 CTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAGGCT-GGT-T
1 CTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * *
97863773 GCTTCAATCTGCTTCACTGCAACTTCA-GGAAGATAAGATTCGCCATAA
1 -CTTCAGTCTACTCCACTGCAACTTCAGGGAA-ATAAGATTCG-C-TAT
* * * * *
97863821 CTTGTAGCTTTAACCTATTCCACTGCAACATCAGGGAAATAAGATTCACTGT
1 CTT-CAG---T---CTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * ** * **
97863873 CTTCAGGCTACTCCGCTGCAACTTCAGGGAGATAAGGCT-GGTGG
1 CTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* *
97863917 CTTCAATCTGCTCCACTGCAACTTCA-GGAAGATAAGATTCGCCATAAT
1 CTTCAGTCTACTCCACTGCAACTTCAGGGAA-ATAAGATTCG-C-T-AT
* * * * *
97863965 -TTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGATTCGTTGT
1 CTT-CAG-TCT-A-C---TCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * * * * * * **
97864016 CTTCAGTTTGCTCCGCTACAACTTCAAGGAGATAAGGTT-GGTGG
1 CTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* * * * * * *
97864060 CTTCAATCTGCTCCACTGCAACTTCAGGAAAAAAATACTCGCCAT
1 CTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
* *
97864105 CTTC-GATCTACTCCACTGCAACTTCAAGGAGATAAGAT
1 CTTCAG-TCTACTCCACTGCAACTTCAGGGAAATAAGAT
97864143 CGACAACTTC
Statistics
Matches: 506, Mismatches: 143, Indels: 92
0.68 0.19 0.12
Matches are distributed among these distances:
43 34 0.07
44 101 0.20
45 163 0.32
46 45 0.09
47 7 0.01
48 5 0.01
49 4 0.01
50 3 0.01
51 53 0.10
52 34 0.07
53 1 0.00
54 48 0.09
55 8 0.02
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (45 bp):
CTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
Found at i:97863632 original size:185 final size:185
Alignment explanation
Indices: 97863403--97863815 Score: 639
Period size: 185 Copynumber: 2.2 Consensus size: 185
97863393 TAACTTGTAA
* * *
97863403 CTTCAATCTGCTCCACTGTAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCTACTGC
1 CTTCAATCTACTTCACTGTAACTTCA-GGAAATAAGATTCGCTATCTTCAGTCTGCTCCTACTAC
97863468 AACTTCAGGGAGATAAGACTCGCAACTTTTAGCTTCAATCTACTCCACTGCAACTTCAGGGAAAT
65 AACTTCAGGGAGATAAGACTCGCAACTTTTAGCTTCAATCTACTCCACTGCAACTTCAGGGAAAT
* *
97863533 GAGATTCACTATCTTCAGTCTACTCCGCTGCAACTTTAGAGAGATAAGGCTGGTGG
130 GAGATTCACTATCTTCAGTCTACTCCGCTACAACTTCAGAGAGATAAGGCTGGTGG
* * *
97863589 CTTC-TTCTACTTCACTGTAACTTTAGAGAAATAAGATTCGCTATCTTTAGTCTGCTCCTACTAC
1 CTTCAATCTACTTCACTGTAACTTCAG-GAAATAAGATTCGCTATCTTCAGTCTGCTCCTACTAC
* * *
97863653 AACTTCAGGGAGATAAGACTCGTAACTTTTAGCTTTAATTTACTCCACTGCAACTTCAGGGAAAT
65 AACTTCAGGGAGATAAGACTCGCAACTTTTAGCTTCAATCTACTCCACTGCAACTTCAGGGAAAT
* * * *
97863718 GAGATTCGCTATCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAGGCTGGTTG
130 GAGATTCACTATCTTCAGTCTACTCCGCTACAACTTCAGAGAGATAAGGCTGGTGG
* *
97863774 CTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATTCGC
1 CTTCAATCTACTTCACTGTAACTTCAGGAA-ATAAGATTCGC
97863816 CATAACTTGT
Statistics
Matches: 205, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
184 1 0.00
185 171 0.83
186 33 0.16
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (185 bp):
CTTCAATCTACTTCACTGTAACTTCAGGAAATAAGATTCGCTATCTTCAGTCTGCTCCTACTACA
ACTTCAGGGAGATAAGACTCGCAACTTTTAGCTTCAATCTACTCCACTGCAACTTCAGGGAAATG
AGATTCACTATCTTCAGTCTACTCCGCTACAACTTCAGAGAGATAAGGCTGGTGG
Found at i:97863938 original size:44 final size:44
Alignment explanation
Indices: 97863883--97864087 Score: 149
Period size: 44 Copynumber: 4.4 Consensus size: 44
97863873 CTTCAGGCTA
*
97863883 CTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTG
* * * *
97863927 CTCCACTGCAACTTCAGGAAGATAAGATTCGCCATAATTTGTAGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAG----G-C-----TGGTGGCTTCAATCTG
* * * ** * * * *
97863981 TTCCACTGCAACGTCAGGGAAATAAGATTCGTTGTCTTCAGTTTG
1 CTCCACTGCAACTTCAGGGAGATAAGGCT-GGTGGCTTCAATCTG
* * * *
97864026 CTCCGCTACAACTTCAAGGAGATAAGGTTGGTGGCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTG
97864070 CTCCACTGCAACTTCAGG
1 CTCCACTGCAACTTCAGG
97864088 AAAAAAATAC
Statistics
Matches: 118, Mismatches: 32, Indels: 22
0.69 0.19 0.13
Matches are distributed among these distances:
44 51 0.43
45 30 0.25
48 1 0.01
49 1 0.01
54 35 0.30
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTG
Found at i:97864104 original size:143 final size:143
Alignment explanation
Indices: 97863639--97864089 Score: 665
Period size: 143 Copynumber: 3.2 Consensus size: 143
97863629 CTATCTTTAG
* * * * * *
97863639 TCTGCTCCTACTACAACTTCAGGGAGATAAGACTCG---TAACTTTTAGCTTTAATTTACTCCAC
1 TCTGCTCC-ACTGCAACTTCAGGAAGATAAGATTCGCCATAACTTGTAGCTTTAATCTATTCCAC
* * *
97863701 TGCAACTTCAGGGAAATGAGATTCGCTATCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAG
65 TGCAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAG
*
97863766 GCTGGTTGCTTCAA
130 GCTGGTGGCTTCAA
* *
97863780 TCTGCTTCACTGCAACTTCAGGAAGATAAGATTCGCCATAACTTGTAGCTTTAACCTATTCCACT
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCATAACTTGTAGCTTTAATCTATTCCACT
* * * *
97863845 GCAACATCAGGGAAATAAGATTCACTGTCTTCAGGCTACTCCGCTGCAACTTCAGGGAGATAAGG
66 GCAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAGG
97863910 CTGGTGGCTTCAA
131 CTGGTGGCTTCAA
* *
97863923 TCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACT
1 TCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCATAACTTGTAGCTTTAATCTATTCCACT
* * * *
97863988 GCAACGTCAGGGAAATAAGATTCGTTGTCTTCAGTTTGCTCCGCTACAACTTCAAGGAGATAAGG
66 GCAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAGG
*
97864053 TTGGTGGCTTCAA
131 CTGGTGGCTTCAA
97864066 TCTGCTCCACTGCAACTTCAGGAA
1 TCTGCTCCACTGCAACTTCAGGAA
97864090 AAAAATACTC
Statistics
Matches: 278, Mismatches: 29, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
140 24 0.09
141 7 0.03
143 247 0.89
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (143 bp):
TCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCATAACTTGTAGCTTTAATCTATTCCACT
GCAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAGG
CTGGTGGCTTCAA
Found at i:97866154 original size:15 final size:15
Alignment explanation
Indices: 97866134--97866163 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
97866124 GGTAGATTTC
97866134 TTTAAAATATTTCAT
1 TTTAAAATATTTCAT
97866149 TTTAAAATATTTCAT
1 TTTAAAATATTTCAT
97866164 AAAAGTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTAAAATATTTCAT
Found at i:97866802 original size:21 final size:20
Alignment explanation
Indices: 97866778--97866816 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
97866768 AAGAAGTAAA
97866778 TAAACAAAACACATTTAATAC
1 TAAACAAAACA-ATTTAATAC
* *
97866799 TAAACCAATCAATTTAAT
1 TAAACAAAACAATTTAAT
97866817 GATATAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.28
Consensus pattern (20 bp):
TAAACAAAACAATTTAATAC
Found at i:97867504 original size:6 final size:7
Alignment explanation
Indices: 97867488--97867513 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
97867478 AACAGATTCG
97867488 AAAAATA
1 AAAAATA
97867495 AAAAATA
1 AAAAATA
97867502 AAAAATA
1 AAAAATA
97867509 AAAAA
1 AAAAA
97867514 GATGAAATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:97868457 original size:22 final size:22
Alignment explanation
Indices: 97868417--97868472 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
97868407 AATAAAATTG
*
97868417 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
97868437 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
97868459 TATTAATAATTTAT
1 AAATAATAAATTAT
97868473 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:97870434 original size:27 final size:28
Alignment explanation
Indices: 97870403--97870462 Score: 104
Period size: 27 Copynumber: 2.2 Consensus size: 28
97870393 AAACAGAAGA
*
97870403 AATAAAATAGAGTAAGCATTTAATGC-T
1 AATAAAACAGAGTAAGCATTTAATGCTT
97870430 AATAAAACAGAGTAAGCATTTAATGCTT
1 AATAAAACAGAGTAAGCATTTAATGCTT
97870458 AATAA
1 AATAA
97870463 GTTCGTATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 25 0.81
28 6 0.19
ACGTcount: A:0.50, C:0.08, G:0.13, T:0.28
Consensus pattern (28 bp):
AATAAAACAGAGTAAGCATTTAATGCTT
Found at i:97870919 original size:24 final size:24
Alignment explanation
Indices: 97870826--97871053 Score: 95
Period size: 24 Copynumber: 9.2 Consensus size: 24
97870816 GCCCTCTCTC
**
97870826 GAGCCATATAACGGGAAGCTCATGT
1 GAGCCAT-TAACGGGAAGCTCATAA
* * **
97870851 GAGCCATGTAATGGGAAGCTTATCC
1 GAGCCAT-TAACGGGAAGCTCATAA
* **
97870876 GGGCTACA-TAACAAGAAGCTCATAA
1 GAGC--CATTAACGGGAAGCTCATAA
** *
97870901 GAGCCATTTTCGGGAAGCTCATAC
1 GAGCCATTAACGGGAAGCTCATAA
* * * *
97870925 GCGCCAATAACGGGTAGCTCTTAA
1 GAGCCATTAACGGGAAGCTCATAA
* *
97870949 GAGCCATTAATGGGAAGCTC-TGGA
1 GAGCCATTAACGGGAAGCTCAT-AA
* **
97870973 GAGTCATTAATTAGGAAGCTTACA-AA
1 GAGCCATTAA-CGGGAAGC-T-CATAA
* *
97870999 GAGCCTTTAATTGGGAAGCTCATGAA
1 GAGCCATTAA-CGGGAAGCTCAT-AA
* *
97871025 GAGCCATATATCGGGACA-TTCATAA
1 GAGCCAT-TAACGGGA-AGCTCATAA
97871050 GAGC
1 GAGC
97871054 TGTGGTGTGT
Statistics
Matches: 151, Mismatches: 40, Indels: 24
0.70 0.19 0.11
Matches are distributed among these distances:
23 3 0.02
24 57 0.38
25 51 0.34
26 34 0.23
27 6 0.04
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.22
Consensus pattern (24 bp):
GAGCCATTAACGGGAAGCTCATAA
Found at i:97870964 original size:48 final size:49
Alignment explanation
Indices: 97870828--97870968 Score: 142
Period size: 48 Copynumber: 2.9 Consensus size: 49
97870818 CCTCTCTCGA
* ** * * *
97870828 GCCATATAACGGGAAGCTCATGTGAGCCATGTAATGGGAAGCTTATCCGG
1 GCCACATAACGGGAAGCTCATAAGAGCCAT-TAATGGGAAGCTCATACGC
* ** *
97870878 GCTACATAACAAGAAGCTCATAAGAGCCATT-TTCGGGAAGCTCATACGC
1 GCCACATAACGGGAAGCTCATAAGAGCCATTAAT-GGGAAGCTCATACGC
* *
97870927 GCCA-ATAACGGGTAGCTCTTAAGAGCCATTAATGGGAAGCTC
1 GCCACATAACGGGAAGCTCATAAGAGCCATTAATGGGAAGCTC
97870969 TGGAGAGTCA
Statistics
Matches: 73, Mismatches: 16, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
48 32 0.44
49 17 0.23
50 24 0.33
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (49 bp):
GCCACATAACGGGAAGCTCATAAGAGCCATTAATGGGAAGCTCATACGC
Found at i:97871040 original size:26 final size:25
Alignment explanation
Indices: 97870890--97871053 Score: 108
Period size: 24 Copynumber: 6.6 Consensus size: 25
97870880 TACATAACAA
*
97870890 GAAGCTCATAAGAGCCATT-TTCGG
1 GAAGCTCATAAGAGCCATTAATCGG
* * *
97870914 GAAGCTCATACGCGCCAATAA-CGG
1 GAAGCTCATAAGAGCCATTAATCGG
* *
97870938 GTAGCTCTTAAGAGCCATTAAT-GG
1 GAAGCTCATAAGAGCCATTAATCGG
* * **
97870962 GAAGCTC-TGGAGAGTCATTAATTAG
1 GAAGCTCAT-AAGAGCCATTAATCGG
* *
97870987 GAAGCTTACA-AAGAGCCTTTAATTGG
1 GAAGC-T-CATAAGAGCCATTAATCGG
97871013 GAAGCTCATGAAGAGCCA-TATATCGG
1 GAAGCTCAT-AAGAGCCATTA-ATCGG
*
97871039 GACA-TTCATAAGAGC
1 GA-AGCTCATAAGAGC
97871054 TGTGGTGTGT
Statistics
Matches: 109, Mismatches: 20, Indels: 21
0.73 0.13 0.14
Matches are distributed among these distances:
23 1 0.01
24 56 0.51
25 15 0.14
26 35 0.32
27 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (25 bp):
GAAGCTCATAAGAGCCATTAATCGG
Found at i:97871131 original size:24 final size:25
Alignment explanation
Indices: 97871094--97871150 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
97871084 CAACTAATCA
* *
97871094 GGAAGCTCCGAAGAGCTAT-TAACG
1 GGAAGCTCCGAAGAACCATATAACG
*
97871118 GTAAGCTCAC-AAGAACCATATAACG
1 GGAAGCTC-CGAAGAACCATATAACG
97871143 GGAAGCTC
1 GGAAGCTC
97871151 GAAAGGGATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 14 0.52
25 13 0.48
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.16
Consensus pattern (25 bp):
GGAAGCTCCGAAGAACCATATAACG
Found at i:97871713 original size:20 final size:20
Alignment explanation
Indices: 97871673--97871713 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
97871663 ATCCCATGTA
*
97871673 TTTCATAAAATTTAGAATTT
1 TTTCATAAAATTTACAATTT
*
97871693 TTTCATAAATTTTAC-ATTT
1 TTTCATAAAATTTACAATTT
97871712 TT
1 TT
97871714 ACAATTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.56
Consensus pattern (20 bp):
TTTCATAAAATTTACAATTT
Found at i:97872827 original size:15 final size:14
Alignment explanation
Indices: 97872798--97872825 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
97872788 TTTACTCACT
97872798 TAACAATAAAAAAA
1 TAACAATAAAAAAA
97872812 TAACAATAAAAAAA
1 TAACAATAAAAAAA
97872826 ATGAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (14 bp):
TAACAATAAAAAAA
Found at i:97872971 original size:13 final size:13
Alignment explanation
Indices: 97872955--97872979 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97872945 GGGAACTAAT
97872955 TTGGGGAAAAAAG
1 TTGGGGAAAAAAG
97872968 TTGGGGAAAAAA
1 TTGGGGAAAAAA
97872980 TAAAGGGAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (13 bp):
TTGGGGAAAAAAG
Found at i:97873103 original size:76 final size:75
Alignment explanation
Indices: 97872917--97873117 Score: 214
Period size: 76 Copynumber: 2.7 Consensus size: 75
97872907 GTAGACGTTG
* * ** *
97872917 GGGAAAAGAGTTAGGGATTTCGA-GGAGGGGGAACTAATTTGGGGAAAA-AAGTTGGGGAAAAAA
1 GGGAAAA-AGTTAGGGATTTTGAGGGAGGGGGAACTGATTTGGGGAAAATAAAATAGGGAAAAAA
97872980 TAAAGGGAATT
65 TAAAGGGAATT
*
97872991 GGGAAAAATGTTAGGGATTTTGAGGAAGGGGTGAACTGATTTGGGGAAAATAAAATAGGGAAAAA
1 GGGAAAAA-GTTAGGGATTTTGAGGGAGGGG-GAACTGATTTGGGGAAAATAAAATAGGGAAAAA
*
97873056 A-AGATAGGGATTT
64 ATA-A-AGGGAATT
* * *
97873069 CGGGTGAAAA-TTAGGGGTTTTG-GGGAGGGGGAACTGATTTGGGGGAAAT
1 -GGG-AAAAAGTTAGGGATTTTGAGGGAGGGGGAACTGATTTGGGGAAAAT
97873118 GAATTGAGGA
Statistics
Matches: 108, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
73 1 0.01
74 20 0.19
75 6 0.06
76 36 0.33
77 20 0.19
78 18 0.17
79 3 0.03
80 4 0.04
ACGTcount: A:0.37, C:0.02, G:0.39, T:0.22
Consensus pattern (75 bp):
GGGAAAAAGTTAGGGATTTTGAGGGAGGGGGAACTGATTTGGGGAAAATAAAATAGGGAAAAAAT
AAAGGGAATT
Found at i:97879491 original size:9 final size:9
Alignment explanation
Indices: 97879479--97879567 Score: 78
Period size: 9 Copynumber: 9.9 Consensus size: 9
97879469 GTACATTTTG
97879479 TTATTATTA
1 TTATTATTA
* *
97879488 TTATTCTCA
1 TTATTATTA
*
97879497 TTATTGTTA
1 TTATTATTA
*
97879506 TTATTGTTA
1 TTATTATTA
97879515 TTATTATTA
1 TTATTATTA
97879524 TTATT-TTA
1 TTATTATTA
97879532 TTTATT-TTA
1 -TTATTATTA
97879541 TTTATT-TTAA
1 -TTATTATT-A
97879551 TT-TTATATA
1 TTATTAT-TA
97879560 TTATTATT
1 TTATTATT
97879568 CAATTAGTAT
Statistics
Matches: 70, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
8 5 0.07
9 59 0.84
10 6 0.09
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (9 bp):
TTATTATTA
Found at i:97879523 original size:15 final size:14
Alignment explanation
Indices: 97879479--97879567 Score: 74
Period size: 15 Copynumber: 6.0 Consensus size: 14
97879469 GTACATTTTG
97879479 TTATTATTATTATT
1 TTATTATTATTATT
* *
97879493 CTCATTATTGTTATT
1 -TTATTATTATTATT
*
97879508 ATTGTTATTATTATT
1 -TTATTATTATTATT
97879523 ATTATT-TTATTTATT
1 -TTATTATTA-TTATT
97879538 TTATTTATT-TTAATT
1 TTA-TTATTATT-ATT
97879553 TTATATATTATTATT
1 TTAT-TATTATTATT
97879568 CAATTAGTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
14 9 0.15
15 48 0.79
16 4 0.07
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (14 bp):
TTATTATTATTATT
Found at i:97881141 original size:17 final size:17
Alignment explanation
Indices: 97881119--97881153 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
97881109 GGGTTTCTTG
97881119 ATAAAGTGGAAGACAAC
1 ATAAAGTGGAAGACAAC
97881136 ATAAAGTGGAAGACAAC
1 ATAAAGTGGAAGACAAC
97881153 A
1 A
97881154 CGTCCGCACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.11, G:0.23, T:0.11
Consensus pattern (17 bp):
ATAAAGTGGAAGACAAC
Found at i:97884265 original size:20 final size:20
Alignment explanation
Indices: 97884240--97884283 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
97884230 GTTACACGGC
97884240 CTACTCCCATGGCCGTGCCT
1 CTACTCCCATGGCCGTGCCT
97884260 CTACTCCCATGGCCGTGCCT
1 CTACTCCCATGGCCGTGCCT
97884280 CTAC
1 CTAC
97884284 GCCACACGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.11, C:0.45, G:0.18, T:0.25
Consensus pattern (20 bp):
CTACTCCCATGGCCGTGCCT
Found at i:97886097 original size:14 final size:16
Alignment explanation
Indices: 97886068--97886105 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
97886058 TCTTTATTAG
97886068 TTCTATTATGTAAAAT
1 TTCTATTATGTAAAAT
97886084 TTCTATT-T-TAAAAT
1 TTCTATTATGTAAAAT
97886098 TTCT-TTAT
1 TTCTATTAT
97886106 ACGTGTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 2 0.10
14 11 0.52
15 1 0.05
16 7 0.33
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.58
Consensus pattern (16 bp):
TTCTATTATGTAAAAT
Found at i:97886988 original size:12 final size:12
Alignment explanation
Indices: 97886971--97887001 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
97886961 TGTCCTTTTA
97886971 TGATTTCGCGCG
1 TGATTTCGCGCG
97886983 TGATTTCGCGCG
1 TGATTTCGCGCG
*
97886995 TGTTTTC
1 TGATTTC
97887002 TTAAAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.23, G:0.29, T:0.42
Consensus pattern (12 bp):
TGATTTCGCGCG
Found at i:97891895 original size:12 final size:12
Alignment explanation
Indices: 97891878--97891902 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97891868 GCCGACTACT
97891878 GTTACTGTTACC
1 GTTACTGTTACC
97891890 GTTACTGTTACC
1 GTTACTGTTACC
97891902 G
1 G
97891903 ATTCGGCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:97892002 original size:47 final size:47
Alignment explanation
Indices: 97891933--97892049 Score: 155
Period size: 47 Copynumber: 2.5 Consensus size: 47
97891923 GATATTGTTA
*
97891933 CTGT-TACCGTTACTGTTACTGTTTCAGATTTGTTCCAATGAGGTACT
1 CTGTGTACCG-TACTGTTACTGTTCCAGATTTGTTCCAATGAGGTACT
* **
97891980 CTGTGTACCGTACTGTTACTGTTCCGGATTTGTTCTGATGAGGTACT
1 CTGTGTACCGTACTGTTACTGTTCCAGATTTGTTCCAATGAGGTACT
* * *
97892027 CTATGTACCGTATTGCTACTGTT
1 CTGTGTACCGTACTGTTACTGTT
97892050 ACTGTTACTA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
47 57 0.92
48 5 0.08
ACGTcount: A:0.17, C:0.20, G:0.21, T:0.42
Consensus pattern (47 bp):
CTGTGTACCGTACTGTTACTGTTCCAGATTTGTTCCAATGAGGTACT
Found at i:97892242 original size:18 final size:18
Alignment explanation
Indices: 97892177--97892244 Score: 57
Period size: 18 Copynumber: 3.7 Consensus size: 18
97892167 AAAGATCGAC
* *
97892177 TGTTACTGAATAATTTAAT
1 TGTTACCGAATAA-TTGAT
*
97892196 TGTTACTC-AATAACTGAT
1 TGTTAC-CGAATAATTGAT
* **
97892214 TATTATTGAATAATTGAT
1 TGTTACCGAATAATTGAT
97892232 TGTTACCGAATAA
1 TGTTACCGAATAA
97892245 CTAACTGTTA
Statistics
Matches: 37, Mismatches: 10, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
18 26 0.70
19 11 0.30
ACGTcount: A:0.37, C:0.09, G:0.12, T:0.43
Consensus pattern (18 bp):
TGTTACCGAATAATTGAT
Found at i:97892260 original size:36 final size:37
Alignment explanation
Indices: 97892175--97892262 Score: 108
Period size: 36 Copynumber: 2.4 Consensus size: 37
97892165 GGAAAGATCG
*
97892175 ACTGTTACTGAATAATTTAATTGTTACTCAATAACTG
1 ACTGTTACTGAATAATTTAATTGTTACTCAATAACTA
* * * *
97892212 ATTATTATTGAATAA-TTGATTGTTAC-CGAATAACTA
1 ACTGTTACTGAATAATTTAATTGTTACTC-AATAACTA
97892248 ACTGTTACTGAATAA
1 ACTGTTACTGAATAA
97892263 ATAATCGTTC
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
35 1 0.02
36 29 0.69
37 12 0.29
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (37 bp):
ACTGTTACTGAATAATTTAATTGTTACTCAATAACTA
Found at i:97894221 original size:27 final size:27
Alignment explanation
Indices: 97894194--97894321 Score: 193
Period size: 27 Copynumber: 4.7 Consensus size: 27
97894184 TTCCAAATAT
*
97894194 CCTCGATTTATAGAATTACCGTTTTAT
1 CCTCGATTTATAGAATTACCGTTTTAC
* *
97894221 CCTCGATTTACAAAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * *
97894248 CCTTGATTTACAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
*
97894275 CCTCGATTTATAGAATTATCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
97894302 CCTCGATTTATAGAATTACC
1 CCTCGATTTATAGAATTACC
97894322 AAAATACCCT
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CCTCGATTTATAGAATTACCGTTTTAC
Found at i:97894329 original size:27 final size:27
Alignment explanation
Indices: 97894150--97894438 Score: 133
Period size: 27 Copynumber: 10.7 Consensus size: 27
97894140 CCCCCAGTTG
* *
97894150 TAAAATTACCAAAGTACCC-CTGGTTTA
1 TAAAATTACCAAAATACCCTC-GATTTA
* *
97894177 TAAAACTTTCC-AAATATCCTCGATTTA
1 TAAAA-TTACCAAAATACCCTCGATTTA
* **** *
97894204 TAGAATTACCGTTTTATCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* **** *
97894231 CAAAATTACCGTTTTACCCTTGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * ***
97894258 CAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * ****
97894285 TAGAATTATCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
97894312 TAGAATTACCAAAATACCCTCGA-TCA
1 TAAAATTACCAAAATACCCTCGATTTA
* * * *
97894338 GTAAATTTACAAAAATACCC-CTGGTTTG
1 -TAAAATTACCAAAATACCCTC-GATTTA
* * *
97894366 TAAAATTACTAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAATACCCTC-GATTTA
*
97894393 TAAAATTACCAAAATACCC-CTGATTTG
1 TAAAATTACCAAAATACCCTC-GATTTA
*
97894420 TAAAA-TACTAAAATACCCT
1 TAAAATTACCAAAATACCCT
97894439 TATAGGGTAG
Statistics
Matches: 219, Mismatches: 36, Indels: 14
0.81 0.13 0.05
Matches are distributed among these distances:
26 19 0.09
27 194 0.89
28 6 0.03
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTA
Found at i:97894461 original size:27 final size:27
Alignment explanation
Indices: 97894425--97894669 Score: 285
Period size: 27 Copynumber: 9.1 Consensus size: 27
97894415 ATTTGTAAAA
* * *
97894425 TACTAAAATACCCTTATAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* * *
97894452 TACTGAAATACCCTTGTAAGGTAGAAA
1 TACTGAAATACCCCTGTAGGGTAGAAT
*
97894479 TACTGAAATACTCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* *
97894506 TATTGAAATACCCCTGTAAGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
*
97894533 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* *
97894560 CACTGAAATACCCCTATAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* *
97894587 TA-TCGAAATACCCTTGTAGGGTAGAAA
1 TACT-GAAATACCCCTGTAGGGTAGAAT
**
97894614 TACCAAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* * * * *
97894641 TACCGAGATACCCATGTGGGGTAAAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
97894668 TA
1 TA
97894670 TCATTTTTCC
Statistics
Matches: 186, Mismatches: 30, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 185 0.99
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
TACTGAAATACCCCTGTAGGGTAGAAT
Found at i:97894912 original size:25 final size:25
Alignment explanation
Indices: 97894876--97894970 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
97894866 AGGAAGTGCT
* *
97894876 AAAAGGGTTTTGCTCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
97894901 AAAAGGACTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
97894926 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
97894951 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
97894971 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:97894983 original size:24 final size:25
Alignment explanation
Indices: 97894876--97894983 Score: 100
Period size: 25 Copynumber: 4.4 Consensus size: 25
97894866 AGGAAGTGCT
* * *
97894876 AAAAG-GGTTTTGCTCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
* *
97894900 GAAAAG-GACTTTGCCCCAGTTTACC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
97894925 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
*
97894950 AAAA-AGGGCTTTGCCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
97894974 AAAAGAGGCT
1 AAAAGAGGCT
97894984 AGGCCTCCAG
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
24 16 0.22
25 58 0.78
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:97894994 original size:50 final size:51
Alignment explanation
Indices: 97894888--97894995 Score: 123
Period size: 50 Copynumber: 2.2 Consensus size: 51
97894878 AAGGGTTTTG
* **
97894888 CTCCAGTTTACCGAAAAGGACTTTGCCCCAGTTTACCGAAAAGGGCTTTGC
1 CTCCAGTTTACCAAAAAGGACTTTGCCCCAGTTTACCGAAAAGGGCTAGGC
* * **
97894939 C-CCAGTTTATCAAAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGC
1 CTCCAGTTTACCAAAAAGGACTTTGCCCCAGTTTACCGAAAAG-GGCTAGGC
97894988 CTCCAGTT
1 CTCCAGTT
97894996 ATATGATAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
48 5 0.10
49 10 0.21
50 32 0.67
51 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (51 bp):
CTCCAGTTTACCAAAAAGGACTTTGCCCCAGTTTACCGAAAAGGGCTAGGC
Found at i:97899559 original size:5 final size:5
Alignment explanation
Indices: 97899490--97899546 Score: 89
Period size: 5 Copynumber: 11.2 Consensus size: 5
97899480 TTGGTATAAT
97899490 TATTA -ATTAA TATTAA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATT-A TATT-A TATTA TATTA TATTA TATTA TATTA TATTA TATTA
97899541 TATTA T
1 TATTA T
97899547 GAAATAAATT
Statistics
Matches: 50, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
4 3 0.06
5 38 0.76
6 9 0.18
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATTA
Found at i:97899850 original size:15 final size:16
Alignment explanation
Indices: 97899825--97899872 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 16
97899815 AAAGTAAAAC
97899825 AAAAGAAAAAGAAATG
1 AAAAGAAAAAGAAATG
*
97899841 AAAA-AAAAAGATA-G
1 AAAAGAAAAAGAAATG
*
97899855 AAAAGAAACAG-AATG
1 AAAAGAAAAAGAAATG
97899870 AAA
1 AAA
97899873 CAAAACAGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
14 6 0.22
15 17 0.63
16 4 0.15
ACGTcount: A:0.75, C:0.02, G:0.17, T:0.06
Consensus pattern (16 bp):
AAAAGAAAAAGAAATG
Found at i:97901298 original size:20 final size:21
Alignment explanation
Indices: 97901275--97901323 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
97901265 AATTATATTG
97901275 AATTGAAAAAAAATAT-AATT
1 AATTGAAAAAAAATATGAATT
**
97901295 AATT-AATTAAAATATGAATT
1 AATTGAAAAAAAATATGAATT
97901315 AATTGAAAA
1 AATTGAAAA
97901324 CTGAAAAGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 9 0.39
20 12 0.52
21 2 0.09
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (21 bp):
AATTGAAAAAAAATATGAATT
Found at i:97901466 original size:12 final size:12
Alignment explanation
Indices: 97901449--97901473 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97901439 GCCGACTACT
97901449 GTTACTGTTACC
1 GTTACTGTTACC
97901461 GTTACTGTTACC
1 GTTACTGTTACC
97901473 G
1 G
97901474 ATTCGGCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:97901573 original size:47 final size:47
Alignment explanation
Indices: 97901504--97901620 Score: 164
Period size: 47 Copynumber: 2.5 Consensus size: 47
97901494 GATATTGTTA
*
97901504 CTGT-TACCGTTACTGTTACTGTTTCAGATTTGTTCCAATGAGGTACT
1 CTGTGTACCG-TACTGTTACTGTTCCAGATTTGTTCCAATGAGGTACT
* **
97901551 CTGTGTACCGTACTGTTACTGTTCCGGATTTGTTCTGATGAGGTACT
1 CTGTGTACCGTACTGTTACTGTTCCAGATTTGTTCCAATGAGGTACT
* *
97901598 CTGTGTACCGTATTGCTACTGTT
1 CTGTGTACCGTACTGTTACTGTT
97901621 ACTGTTACTA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
47 58 0.92
48 5 0.08
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (47 bp):
CTGTGTACCGTACTGTTACTGTTCCAGATTTGTTCCAATGAGGTACT
Found at i:97901813 original size:18 final size:18
Alignment explanation
Indices: 97901748--97901833 Score: 91
Period size: 18 Copynumber: 4.7 Consensus size: 18
97901738 AAAGATCGAC
* *
97901748 TGTTACTGAATAATTTAAT
1 TGTTACTGAATAA-CTGAT
*
97901767 TGTTACTCAATAACTGAT
1 TGTTACTGAATAACTGAT
* * *
97901785 TATTATTGAATAATTGAT
1 TGTTACTGAATAACTGAT
* *
97901803 TGTTACCGAATAACTGAC
1 TGTTACTGAATAACTGAT
97901821 TGTTACTGAATAA
1 TGTTACTGAATAA
97901834 ATAATCGTTC
Statistics
Matches: 54, Mismatches: 13, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
18 42 0.78
19 12 0.22
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (18 bp):
TGTTACTGAATAACTGAT
Found at i:97901815 original size:36 final size:37
Alignment explanation
Indices: 97901745--97901833 Score: 110
Period size: 36 Copynumber: 2.4 Consensus size: 37
97901735 TGGAAAGATC
*
97901745 GACTGTTACTGAATAATTTAATTGTTACTCAATAACT
1 GACTATTACTGAATAATTTAATTGTTACTCAATAACT
* * *
97901782 GATTATTATTGAATAA-TTGATTGTTAC-CGAATAACT
1 GACTATTACTGAATAATTTAATTGTTACTC-AATAACT
*
97901818 GACTGTTACTGAATAA
1 GACTATTACTGAATAA
97901834 ATAATCGTTC
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
35 1 0.02
36 30 0.68
37 13 0.30
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.39
Consensus pattern (37 bp):
GACTATTACTGAATAATTTAATTGTTACTCAATAACT
Found at i:97903088 original size:178 final size:178
Alignment explanation
Indices: 97902775--97903854 Score: 1463
Period size: 178 Copynumber: 6.1 Consensus size: 178
97902765 GTGAATTCAC
* * * * * * *
97902775 AGATCTTATCTCCCTGAGATAGCAGTGGAGCAGATTGAATACAGTGAATCTTATTTTCCCGAGGT
1 AGATCTCATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCTCGAGGT
* *
97902840 AGCAGGGGAGTC-GATTTTAGCCACTAGCCTTATTTCCCTAAGGTAGCAATGGAGCAGGCTGAAG
66 AGCAGGGGAG-CAGATTTTAGCCACTAGCCTTATCTCCCTAAGGTAGCAAAGGAGCAGGCTGAAG
* * * *
97902904 ATTGTGGTTTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTAA
130 ATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
**
97902953 AGATCTCATCTCTTTGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCTCGAGGT
1 AGATCTCATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCTCGAGGT
* * * *
97903018 AGTAGGGGAGCAGATTTTAGTCACTAGCCTTATCTCCATGAGGTAGCAAAGGAGCAGGCTGAAGA
66 AGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTAAGGTAGCAAAGGAGCAGGCTGAAGA
*
97903083 TTGTGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
131 TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
*
97903131 AGATCTCATCTCCCTGAGATAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTT-TCTGAGG
1 AGATCTCATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCTC-GAGG
* * * *
97903195 TAGCAAGGGAGCAGATTTTAGCCACTAGCCTTCTCTCCCTGAGGTAGCAAGGGAGCAGGCTGAAG
65 TAGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTAAGGTAGCAAAGGAGCAGGCTGAAG
* * *
97903260 ATTGTAGTCTTATCTTCCTGAGGCAGCAAGGAAGAAGATTGAAGATTGA
130 ATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * *
97903309 AGATCTCATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACAGTGAATCTTATCTTC-CTAAGG
1 AGATCTCATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCTC-GAGG
* *
97903373 TAGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTAAGGTAG-TAAGAGAGCAGGCCGAA
65 TAGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTAAGGTAGCAAAG-GAGCAGGCTGAA
* * * *
97903437 GATTGTAGCCTTATCTTCTTGAAGTAGCAAGGAAGTAGACTGAAGATTGA
129 GATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * * *
97903487 AGATCTTATCTCCCTAAGATGGCAGTGGAGCAGATCGAAGACGACGAATCTTATCTT-TCCGAGG
1 AGATCTCATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCT-CGAGG
**
97903551 TAGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTAAGGTAGC-AAGAGAGCAGATTGAA
65 TAGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTAAGGTAGCAAAG-GAGCAGGCTGAA
* * * ** *
97903615 GATTGTAGTCTTATCTTCCTCAGATAGCAAGAAAATAGAATGAAGATTGA
129 GATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
* * * *
97903665 AGATCTCATCTCCCTGAGATAGCAGTGGAGCAAATCGAAGACGGCGACTCTTATTTTCCCGAGGT
1 AGATCTCATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCTCGAGGT
* * * *
97903730 AGCAGGGGAGCAGATTTTAGCCATTAGCCTTATCTCCCTGAGGTAACAAGGGAGCAGG-TCGAAG
66 AGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTAAGGTAGCAAAGGAGCAGGCT-GAAG
* * * * * * *
97903794 GTTGTAGTCTTATCTCCCTGAGGTAGCAATGAAGCAAACTGAAAATGGT
130 ATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
*
97903843 AGATCTTATCTC
1 AGATCTCATCTC
97903855 TCTAAAGTTA
Statistics
Matches: 800, Mismatches: 92, Indels: 20
0.88 0.10 0.02
Matches are distributed among these distances:
177 6 0.01
178 791 0.99
179 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (178 bp):
AGATCTCATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCTCGAGGT
AGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTAAGGTAGCAAAGGAGCAGGCTGAAGA
TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
Found at i:97903384 original size:45 final size:45
Alignment explanation
Indices: 97902777--97903822 Score: 201
Period size: 44 Copynumber: 23.5 Consensus size: 45
97902767 GAATTCACAG
* * * *
97902777 ATCTTATCTCCCTGAGATAGC-AGTGGAGCAGATTGAATACAGTGA
1 ATCTTATCTTCCTGAGGTAGCAAG-GGAGCAGATCGAAGACAGTGA
* * * *** * *
97902822 ATCTTATTTTCCCGAGGTAGCAGGGGAGTC-GATTTTAGCCACT-A
1 ATCTTATCTTCCTGAGGTAGCAAGGGAG-CAGATCGAAGACAGTGA
** * * * **
97902866 GCCTTAT-TTCCCTAAGGTAGCAATGGAGCAG-GCTGAAGATTGTG-
1 ATCTTATCTT-CCTGAGGTAGCAAGGGAGCAGATC-GAAGACAGTGA
* * * * * **
97902910 GTTTTATCTTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTAAAG-
1 ATCTTATCTTCCTGAGGTAGCAAGGGAGCAGATCGAAGA-CAGTGA
* * * * *
97902955 ATCTCATC-TCTTTGAGATAGC-AGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTTC-CTGAGGTAGCAAG-GGAGCAGATCGAAGACAGTGA
* * *** * *
97903000 ATCTTATCTT-CTCGAGGTAGTAGGGGAGCAGATTTTAGTCACT-A
1 ATCTTATCTTCCT-GAGGTAGCAAGGGAGCAGATCGAAGACAGTGA
** * * **
97903044 GCCTTATC-TCCATGAGGTAGCAAAGGAGCAG-GCTGAAGATTGTG-
1 ATCTTATCTTCC-TGAGGTAGCAAGGGAGCAGATC-GAAGACAGTGA
* * *
97903088 GTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA-CTGAAG--ATTGAA
1 ATCTTATCTTCCTGAGGTAGCAAGGGAGCAGATC-GAAGACAGTG-A
* * * * * *
97903132 GATCTCATCTCCCTGAGATAG-TAGTGGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTTCCTGAGGTAGCAAG-GGAGCAGATCGAAGACAGTGA
* *** * *
97903178 ATCTTATCTTTCTGAGGTAGCAAGGGAGCAGATTTTAGCCACT-A
1 ATCTTATCTTCCTGAGGTAGCAAGGGAGCAGATCGAAGACAGTGA
** * * * **
97903222 GCCTTCTCTCCCTGAGGTAGCAAGGGAGCAG-GCTGAAGATTGT-A
1 ATCTTATCTTCCTGAGGTAGCAAGGGAGCAGATC-GAAGACAGTGA
* * * * * *
97903266 GTCTTATCTTCCTGAGGCAGCAAGGAAGAAGATTGAAG--ATTGAA
1 ATCTTATCTTCCTGAGGTAGCAAGGGAGCAGATCGAAGACAGTG-A
* * *
97903310 GATCTCATCTCCCTGAGATAGC-AGTGGAGCAGATCGAAGACAGTGA
1 -ATCTTATCTTCCTGAGGTAGCAAG-GGAGCAGATCGAAGACAGTGA
* * *** * *
97903356 ATCTTATCTTCCTAAGGTAGCAGGGGAGCAGATTTTAGCCACT-A
1 ATCTTATCTTCCTGAGGTAGCAAGGGAGCAGATCGAAGACAGTGA
** * * * * ** **
97903400 GCCTTATCTCCCTAAGGTAGTAAGAGAGCAGGCCGAAGATTGT-A
1 ATCTTATCTTCCTGAGGTAGCAAGGGAGCAGATCGAAGACAGTGA
** * * * * *
97903444 GCCTTATCTTCTTGAAGTAGCAAGGAAGTAGA-CTGAAG--ATTGAA
1 ATCTTATCTTCCTGAGGTAGCAAGGGAGCAGATC-GAAGACAGTG-A
* * * * *
97903488 GATCTTATCTCCCTAAGATGGC-AGTGGAGCAGATCGAAGAC-GACGA
1 -ATCTTATCTTCCTGAGGTAGCAAG-GGAGCAGATCGAAGACAG-TGA
* *** * *
97903534 ATCTTATCTTTCC-GAGGTAGCAGGGGAGCAGATTTTAGCCACT-A
1 ATCTTATC-TTCCTGAGGTAGCAAGGGAGCAGATCGAAGACAGTGA
** * * * * **
97903578 GCCTTATCTCCCTAAGGTAGCAAGAGAGCAGATTGAAGATTGT-A
1 ATCTTATCTTCCTGAGGTAGCAAGGGAGCAGATCGAAGACAGTGA
* * * ** ** *
97903622 GTCTTATCTTCCTCAGATAGCAAGAAAATAGAAT-GAAG--ATTGAA
1 ATCTTATCTTCCTGAGGTAGCAAGGGAGCAG-ATCGAAGACAGTG-A
* * * * * *
97903666 GATCTCATCTCCCTGAGATAGC-AGTGGAGCAAATCGAAGACGGCGA
1 -ATCTTATCTTCCTGAGGTAGCAAG-GGAGCAGATCGAAGACAGTGA
* * * * *** * *
97903712 CTCTTATTTTCCCGAGGTAGCAGGGGAGCAGATTTTAGCCA-TTA
1 ATCTTATCTTCCTGAGGTAGCAAGGGAGCAGATCGAAGACAGTGA
** * * * ***
97903756 GCCTTATCTCCCTGAGGTAACAAGGGAGCAGGTCGAAGGTTGT-A
1 ATCTTATCTTCCTGAGGTAGCAAGGGAGCAGATCGAAGACAGTGA
* *
97903800 GTCTTATCTCCCTGAGGTAGCAA
1 ATCTTATCTTCCTGAGGTAGCAA
97903823 TGAAGCAAAC
Statistics
Matches: 689, Mismatches: 251, Indels: 123
0.65 0.24 0.12
Matches are distributed among these distances:
42 5 0.01
43 8 0.01
44 351 0.51
45 301 0.44
46 18 0.03
47 6 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (45 bp):
ATCTTATCTTCCTGAGGTAGCAAGGGAGCAGATCGAAGACAGTGA
Found at i:97908185 original size:58 final size:57
Alignment explanation
Indices: 97908076--97908250 Score: 218
Period size: 58 Copynumber: 3.1 Consensus size: 57
97908066 TCTTACATTG
97908076 ATCACATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAA---A--ACTT-TCACTT
1 ATCAC-TTT-TCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTT
97908129 ATCACTTTTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTT
1 ATCACTTTTCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTT
* * * * *
97908187 GTCGCTTGTCGCTTGTCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTT
1 ATCACTTTTCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTT
*
97908245 GTCACT
1 ATCACT
97908251 GATCAGAAGA
Statistics
Matches: 108, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
51 30 0.28
52 5 0.05
53 5 0.05
55 1 0.01
57 4 0.04
58 63 0.58
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.34
Consensus pattern (57 bp):
ATCACTTTTCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTT
Found at i:97908246 original size:51 final size:51
Alignment explanation
Indices: 97908086--97908250 Score: 204
Period size: 51 Copynumber: 3.1 Consensus size: 51
97908076 ATCACATTTA
* ** *
97908086 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTTTCACTTATCACTTT
1 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
97908137 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCGCTTG
1 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCA-------CTTG
* * *
97908195 TCGCTTGTCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
97908246 TCACT
1 TCACT
97908251 GATCAGAAGA
Statistics
Matches: 99, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
51 52 0.53
58 47 0.47
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (51 bp):
TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
Found at i:97915876 original size:40 final size:40
Alignment explanation
Indices: 97915832--97915925 Score: 161
Period size: 40 Copynumber: 2.4 Consensus size: 40
97915822 GCTATGTTTG
*
97915832 GCACTTAGTGTGTGCTTCGAGACAGCTTCGGCTATATACA
1 GCACTTAGTGTGCGCTTCGAGACAGCTTCGGCTATATACA
* *
97915872 GCACTTAGTGTGCGCTTCGAGATAGCTTTGGCTATATACA
1 GCACTTAGTGTGCGCTTCGAGACAGCTTCGGCTATATACA
97915912 GCACTTAGTGTGCG
1 GCACTTAGTGTGCG
97915926 AATTGGAATA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (40 bp):
GCACTTAGTGTGCGCTTCGAGACAGCTTCGGCTATATACA
Found at i:97915937 original size:40 final size:40
Alignment explanation
Indices: 97915832--97915940 Score: 148
Period size: 40 Copynumber: 2.7 Consensus size: 40
97915822 GCTATGTTTG
* * *
97915832 GCACTTAGTGTGTGCTTCGAGACAGCTTCGGCTATATACA
1 GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATACA
* *
97915872 GCACTTAGTGTGCGCTTCGAGATAGCTTTGGCTATATACA
1 GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATACA
*
97915912 GCACTTAGTGTGCGAATTGGA-ATAGCTTC
1 GCACTTAGTGTGCG-ATTCGAGATAGCTTC
97915941 AGTTTTATGT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
40 58 0.94
41 4 0.06
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (40 bp):
GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATACA
Done.