Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 301 of 325
Found at i:97918839 original size:44 final size:44
Alignment explanation
Indices: 97918776--97919853 Score: 646
Period size: 44 Copynumber: 23.6 Consensus size: 44
97918766 CATCATGAAG
* * * ** *
97918776 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* *
97918820 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * *
97918864 AATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGATACAAGTTGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT---A----CA
* * * * *
97918915 AATCTTATCCCCCTGAAGTTGTAGTCGAGTAGATTGAAGATAGTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* **
97918960 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* ** * * **
97919005 AATATTATCTCTTTGAAGTTGCAATGGAGCAGATTAAAGCCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * *
97919049 AATCTTATCTCCCTAAAATTACAGTGGAGCAGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * *
97919093 AATCTTATCTCTCTGAAGTTGTAGTGGAGCAGATTAAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * *
97919138 AATCTTATCTCTCTAAAGTTGCTGTGGAGCAGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* ***
97919182 AATCCTATAC-CCCTGAAGTTGCAGTGG-G-ACGAATTGAAGTCATTGTGGTG
1 AATCTTAT-CTCCCTGAAGTTGCAGTGGAGCA-G-ATTGAAG--A---T-ACA
* * *
97919232 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAG-TCAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACA
* * *
97919276 AACCATATCTCCCTGAAGTTGCAGTGGAGCAGATTGTAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * *
97919321 AATCTTATCTTCCTGAAGTTGTAGTGAAGC-GAGTTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGATACA
* * ** * *
97919365 AATCTTATTTCCCTAAAGTTGCAGTGGAAAAAAATTAAAGCTACAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGG-AGCAGATT---G----AAGATACA
* ** ** * *
97919417 AATCTTATCTCTCTGAAGTTATAGTGGAATAGATTAAATATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * *
97919462 AATCTTATTTCCCT-AATGTTGCAGTGGAACAAATTAAAGCTTCAAGTTACA
1 AATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGATT---G----AAGATACA
* * * * *
97919513 AATCTTATATTCTTGAAGTTGCAGTGGAACAGATTGAAG-T--G
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * *
97919554 AACCTTATCTCTCTGAAGTTGCTGTGGAGCAGGTTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * ** **
97919598 AATCTTATTTCCCTGAAGTTGCAATGGAATAGATAAAAGCTACAAGTCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-----A-T-ACA
* * * *
97919649 AATCTTATTTCCCTGAAGTTGCATTGGAGTAGATTGAAGATAATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACA
* * * * **
97919694 AATCTTATCTCCATGAAGTTGTAGTGGAGTAGATTGAAGGTAGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * ** * **
97919739 AATATTATCGCCCTGAAGTTGCAGCAGAGCAAATTGAAGATATG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * * *
97919783 AATCTCATCTCTCTGAGGTTGGAGCGGAGTAGATTGAA-ATTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TACA
* * * *
97919827 ATTCCTATATCCCTGAAGTTCCAGTGG
1 AATCTTATCTCCCTGAAGTTGCAGTGG
97919854 GTTAGAATTA
Statistics
Matches: 805, Mismatches: 175, Indels: 108
0.74 0.16 0.10
Matches are distributed among these distances:
41 31 0.04
42 2 0.00
43 4 0.00
44 327 0.41
45 253 0.31
46 2 0.00
47 1 0.00
48 3 0.00
49 2 0.00
50 31 0.04
51 112 0.14
52 37 0.05
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
Found at i:97919074 original size:89 final size:89
Alignment explanation
Indices: 97918913--97919392 Score: 299
Period size: 89 Copynumber: 5.3 Consensus size: 89
97918903 ATACAAGTTG
* * * * * * * * * * *
97918913 CAAATCTTATCCCCCTGAAGTTGTAGTCGAGTAGATTGAAGATAGTAAATCTTATCTCCCTGAAG
1 CAAATATTATCTCTCTGAAGTTGCAATGGAGCAGATTAAAGACAGCAAATCTTATCTCCCTAAAG
97918978 TTGCAGTGGAGCAGATTGAAAATA
66 TTGCAGTGGAGCAGATTGAAAATA
** * *
97919002 GTGAATATTATCTCTTTGAAGTTGCAATGGAGCAGATTAAAGCCA-CAAATCTTATCTCCCTAAA
1 -CAAATATTATCTCTCTGAAGTTGCAATGGAGCAGATTAAAGACAGCAAATCTTATCTCCCTAAA
* * **
97919066 ATTACAGTGGAGCAGATTGAAGTTA
65 GTTGCAGTGGAGCAGATTGAAAATA
* * * * *
97919091 CAAATCTTATCTCTCTGAAGTTGTAGTGGAGCAGATTAAAGATAGCAAATCTTATCTCTCTAAAG
1 CAAATATTATCTCTCTGAAGTTGCAATGGAGCAGATTAAAGACAGCAAATCTTATCTCCCTAAAG
* **
97919156 TTGCTGTGGAGCAGATTGAAGTTA
66 TTGCAGTGGAGCAGATTGAAAATA
** * * * * **
97919180 CAAATCCTATAC-CCCTGAAGTTGCAGTGG-G-ACGAATTGAAGTCATTGTGGTGAATCTTATCT
1 CAAATATTAT-CTCTCTGAAGTTGCAATGGAGCA-G-ATTAAAGACA-----GCAAATCTTATCT
* * *
97919242 CCCTGAAGTTGCAGTGGAGTAGATT-AAAGT-
58 CCCTAAAGTTGCAGTGGAGCAGATTGAAAATA
* * * * ** * * *
97919272 CAAAAACCATATCTCCCTGAAGTTGCAGTGGAGCAGATTGTAGATAGCAAATCTTATCTTCCTGA
1 CAAATA--TTATCTCTCTGAAGTTGCAATGGAGCAGATTAAAGACAGCAAATCTTATCTCCCTAA
* * **
97919337 AGTTGTAGTGAAGC-GAGTTGAAGCTA
64 AGTTGCAGTGGAGCAGA-TTGAAAATA
* * * * *
97919363 CAAATCTTATTTCCCTAAAGTTGCAGTGGA
1 CAAATATTATCTCTCTGAAGTTGCAATGGA
97919393 AAAAAATTAA
Statistics
Matches: 309, Mismatches: 64, Indels: 35
0.76 0.16 0.09
Matches are distributed among these distances:
87 1 0.00
88 40 0.13
89 159 0.51
90 35 0.11
91 4 0.01
92 4 0.01
93 4 0.01
94 59 0.19
95 2 0.01
96 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (89 bp):
CAAATATTATCTCTCTGAAGTTGCAATGGAGCAGATTAAAGACAGCAAATCTTATCTCCCTAAAG
TTGCAGTGGAGCAGATTGAAAATA
Found at i:97919307 original size:183 final size:183
Alignment explanation
Indices: 97919049--97919391 Score: 458
Period size: 183 Copynumber: 1.9 Consensus size: 183
97919039 TAAAGCCACA
* * * * * *
97919049 AATCTTATCTCCCTAAAATTACAGTGGAGCAGATTGAAGTTACAAATCTTATCTCTCTGAAGTTG
1 AATCTTATCTCCCTAAAATTACAGTGGAGCAGATTAAAGTCAAAAACCATATCTCCCTGAAGTTG
* *
97919114 TAGTGGAGCAGATTAAAGATAGCAAATCTTATC-TCTCTAAAGTTGCT-GTGGAGC-AGATTGAA
66 CAGTGGAGCAGATTAAAGATAGCAAATCTTATCTTC-CTAAAGTTG-TAGTGAAGCGAG-TTGAA
* *
97919176 GTTACAAATCCTATACCCCTGAAGTTGCAGTGGGACGAATTGAAGTCATTGTGGTG
128 GCTACAAATCCTATACCCCTAAAGTTGCAGTGGGACGAATTGAAGTCATTGTGGTG
* * * *
97919232 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGTCAAAAACCATATCTCCCTGAAGTTG
1 AATCTTATCTCCCTAAAATTACAGTGGAGCAGATTAAAGTCAAAAACCATATCTCCCTGAAGTTG
** *
97919297 CAGTGGAGCAGATTGTAGATAGCAAATCTTATCTTCCTGAAGTTGTAGTGAAGCGAGTTGAAGCT
66 CAGTGGAGCAGATTAAAGATAGCAAATCTTATCTTCCTAAAGTTGTAGTGAAGCGAGTTGAAGCT
* **
97919362 ACAAATCTTATTTCCCTAAAGTTGCAGTGG
131 ACAAATCCTATACCCCTAAAGTTGCAGTGG
97919392 AAAAAAATTA
Statistics
Matches: 137, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
182 1 0.01
183 132 0.96
184 4 0.03
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (183 bp):
AATCTTATCTCCCTAAAATTACAGTGGAGCAGATTAAAGTCAAAAACCATATCTCCCTGAAGTTG
CAGTGGAGCAGATTAAAGATAGCAAATCTTATCTTCCTAAAGTTGTAGTGAAGCGAGTTGAAGCT
ACAAATCCTATACCCCTAAAGTTGCAGTGGGACGAATTGAAGTCATTGTGGTG
Found at i:97919359 original size:139 final size:139
Alignment explanation
Indices: 97919093--97919347 Score: 327
Period size: 139 Copynumber: 1.8 Consensus size: 139
97919083 TGAAGTTACA
* * * * * *
97919093 AATCTTATCTCTCTGAAGTTGTAGTGGAGCAGATTAAAGATAGCAAATCTTATCTCTCTAAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGAAAACCATATCTCCCTAAAGTT
* * *
97919158 GCTGTGGAGCAGATTGAAGTTACAAATCCTATACCCCTGAAGTTGCAGTGGGACGAATTGAAGTC
66 GCAGTGGAGCAGATTGAAGATACAAATCCTATACCCCTGAAGTTGCAGTGAGACGAATTGAAGTC
97919223 ATTGTGGTG
131 ATTGTGGTG
* *
97919232 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAG-TCA-AAAACCATATCTCCCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAT-AGAAAACCATATCTCCCTAAAGT
* * * *
97919295 TGCAGTGGAGCAGATTGTAGATAGCAAATCTTAT-CTTCCTGAAGTTGTAGTGA
65 TGCAGTGGAGCAGATTGAAGATA-CAAATCCTATAC-CCCTGAAGTTGCAGTGA
97919348 AGCGAGTTGA
Statistics
Matches: 98, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
138 38 0.39
139 60 0.61
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (139 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGAAAACCATATCTCCCTAAAGTT
GCAGTGGAGCAGATTGAAGATACAAATCCTATACCCCTGAAGTTGCAGTGAGACGAATTGAAGTC
ATTGTGGTG
Found at i:97919436 original size:52 final size:51
Alignment explanation
Indices: 97919357--97919541 Score: 179
Period size: 52 Copynumber: 3.7 Consensus size: 51
97919347 AAGCGAGTTG
*
97919357 AAGCTACAAATCTTATTTCCCTAAAGTTGCAGTGGAAAAAAATTAAAGCTAC
1 AAGCTACAAATCTTATTTCCCTGAAGTTGCAGTGG-AAAAAATTAAAGCTAC
* * ** * *
97919409 AAGCTACAAATCTTATCTCTCTGAAGTTATAGTGGAATAGATTAAA--TA-
1 AAGCTACAAATCTTATTTCCCTGAAGTTGCAGTGGAAAAAATTAAAGCTAC
* * *
97919457 TAG---CAAATCTTATTTCCCT-AATGTTGCAGTGGAACAAATTAAAGCTTC
1 AAGCTACAAATCTTATTTCCCTGAA-GTTGCAGTGGAAAAAATTAAAGCTAC
* *
97919505 AAGTTACAAATCTTATATT-CTTGAAGTTGCAGTGGAA
1 AAGCTACAAATCTTAT-TTCCCTGAAGTTGCAGTGGAA
97919542 CAGATTGAAG
Statistics
Matches: 107, Mismatches: 17, Indels: 19
0.75 0.12 0.13
Matches are distributed among these distances:
44 2 0.02
45 31 0.29
47 1 0.01
48 4 0.04
49 2 0.02
51 33 0.31
52 34 0.32
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (51 bp):
AAGCTACAAATCTTATTTCCCTGAAGTTGCAGTGGAAAAAATTAAAGCTAC
Found at i:97919496 original size:96 final size:97
Alignment explanation
Indices: 97919363--97919547 Score: 275
Period size: 96 Copynumber: 1.9 Consensus size: 97
97919353 GTTGAAGCTA
*
97919363 CAAATCTTATTTCCCTAAAGTTGCAGTGGAAAAAAATTAAAGCTACAAGCTACAAATCTTAT-CT
1 CAAATCTTATTTCCCTAAAGTTGCAGTGGAAAAAAATTAAAGCTACAAGCTACAAATCTTATATT
* *
97919427 CTCTGAAGTTATAGTGGAATAGATTAAATATAG
66 CT-TGAAGTTACAGTGGAACAGATTAAATATAG
* * * *
97919460 CAAATCTTATTTCCCTAATGTTGCAGTGG-AACAAATTAAAGCTTCAAGTTACAAATCTTATATT
1 CAAATCTTATTTCCCTAAAGTTGCAGTGGAAAAAAATTAAAGCTACAAGCTACAAATCTTATATT
*
97919524 CTTGAAGTTGCAGTGGAACAGATT
66 CTTGAAGTTACAGTGGAACAGATT
97919548 GAAGTGAACC
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
96 48 0.61
97 31 0.39
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.32
Consensus pattern (97 bp):
CAAATCTTATTTCCCTAAAGTTGCAGTGGAAAAAAATTAAAGCTACAAGCTACAAATCTTATATT
CTTGAAGTTACAGTGGAACAGATTAAATATAG
Found at i:97921398 original size:23 final size:25
Alignment explanation
Indices: 97921363--97921413 Score: 70
Period size: 23 Copynumber: 2.1 Consensus size: 25
97921353 TTGGTTCTTC
*
97921363 TTATTATTCTCATTATTGTTATTAT
1 TTATTATTCTCATTATTATTATTAT
*
97921388 TTATT-TT-TCATTATTATTATTTT
1 TTATTATTCTCATTATTATTATTAT
97921411 TTA
1 TTA
97921414 AAATTTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 17 0.71
24 2 0.08
25 5 0.21
ACGTcount: A:0.24, C:0.06, G:0.02, T:0.69
Consensus pattern (25 bp):
TTATTATTCTCATTATTATTATTAT
Found at i:97926477 original size:42 final size:44
Alignment explanation
Indices: 97926418--97926534 Score: 134
Period size: 44 Copynumber: 2.7 Consensus size: 44
97926408 GTTACCACTA
*
97926418 TCCTAGACAG-GGTCTTACACG-AAATCA-AA-TACGATGCCAACG
1 TCCTAGA-AGTGGTCTTACACGTAAAACATAAGT-CGATGCCAACG
*
97926460 TCCTAGAAGTGGTCTTACACGTAAAACATAAGTCGATGCTAACG
1 TCCTAGAAGTGGTCTTACACGTAAAACATAAGTCGATGCCAACG
* * *
97926504 TCCCAGACGTGGTCTTACATGATAAAACATA
1 TCCTAGAAGTGGTCTTACACG-TAAAACATA
97926535 TCGGATCCTA
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
41 2 0.03
42 18 0.28
43 5 0.08
44 30 0.46
45 10 0.15
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (44 bp):
TCCTAGAAGTGGTCTTACACGTAAAACATAAGTCGATGCCAACG
Found at i:97936003 original size:15 final size:15
Alignment explanation
Indices: 97935983--97936029 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
97935973 AATACTAATT
*
97935983 AAATAAAAATATAAA
1 AAATAAAAAAATAAA
97935998 AAATAAAAAAATAAA
1 AAATAAAAAAATAAA
*
97936013 TAATAATGAAAAATAAA
1 AAATAA--AAAAATAAA
97936030 TAACAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 19 0.68
17 9 0.32
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (15 bp):
AAATAAAAAAATAAA
Found at i:97936009 original size:23 final size:24
Alignment explanation
Indices: 97935983--97936043 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
97935973 AATACTAATT
97935983 AAATAAAAATATAAAAAATAAA-A
1 AAATAAAAATATAAAAAATAAATA
*
97936006 AAATAAATAATAATGAAAAATAAATA
1 AAATAAA-AAT-ATAAAAAATAAATA
*
97936032 ACAATAATAATA
1 A-AATAAAAATA
97936044 ATGAGAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
23 7 0.22
24 3 0.09
25 12 0.38
26 5 0.16
27 5 0.16
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (24 bp):
AAATAAAAATATAAAAAATAAATA
Found at i:97936017 original size:3 final size:3
Alignment explanation
Indices: 97936011--97936063 Score: 52
Period size: 3 Copynumber: 17.0 Consensus size: 3
97936001 TAAAAAAATA
* * * *
97936011 AAT AAT AAT GAAA AAT AAAT AAC AAT AAT AAT AAT GAG AAT AAT AAT
1 AAT AAT AAT -AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
97936058 AAT AAT
1 AAT AAT
97936064 GACAAAATGT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
3 35 0.88
4 5 0.12
ACGTcount: A:0.66, C:0.02, G:0.06, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:97936032 original size:44 final size:45
Alignment explanation
Indices: 97935982--97936071 Score: 105
Period size: 44 Copynumber: 2.0 Consensus size: 45
97935972 TAATACTAAT
97935982 TAAATAAAAAT-ATAAAAAAT-AAAAAAATAAATAATAATGA-AAAA
1 TAAATAAAAATAAT-AAAAATGAAAAAAAT-AATAATAATGACAAAA
* * * *
97936026 TAAATAACAATAATAATAATGAGAATAATAATAATAATGACAAAA
1 TAAATAAAAATAATAAAAATGAAAAAAATAATAATAATGACAAAA
97936071 T
1 T
97936072 GTGCAAAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
44 26 0.67
45 13 0.33
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.23
Consensus pattern (45 bp):
TAAATAAAAATAATAAAAATGAAAAAAATAATAATAATGACAAAA
Found at i:97938313 original size:29 final size:29
Alignment explanation
Indices: 97938279--97938336 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
97938269 ACCCCATAAG
*
97938279 TTAGGGTATGATTTCTAGAAATTTTAAAT
1 TTAGGGTACGATTTCTAGAAATTTTAAAT
97938308 TTAGGGTACGATTTCTAGAAATTTTAAAT
1 TTAGGGTACGATTTCTAGAAATTTTAAAT
97938337 ACAAAATATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.43
Consensus pattern (29 bp):
TTAGGGTACGATTTCTAGAAATTTTAAAT
Found at i:97938602 original size:15 final size:14
Alignment explanation
Indices: 97938581--97938617 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
97938571 AAAGGCCAAG
97938581 AATAAAATAAAGTAA
1 AATAAAATAAA-TAA
*
97938596 GATAAAATAAATAA
1 AATAAAATAAATAA
97938610 AATAAAAT
1 AATAAAAT
97938618 GAAGGTTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (14 bp):
AATAAAATAAATAA
Found at i:97940458 original size:44 final size:44
Alignment explanation
Indices: 97940307--97940791 Score: 209
Period size: 44 Copynumber: 10.7 Consensus size: 44
97940297 TTTAATCTAT
* * ** * **
97940307 TCCACTGCAACTTTAGGGAAATAAGATTCACTATCTTCAGTCTAT
1 TCCACTGCAACTTCAGGGAGATAAGATT-TGTATCTTCAATCTGC
* * * * * *
97940352 TTCACTGCAACTTTAGGGAGATGAGGTTAATG-GT-TACAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATT--TGTATCTTCAATCTGC
* * * * *
97940396 TCCACTACAAATTTAGGGAGATGAGATTTGTATCTTCAATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATCTGC
* * *** *
97940440 TCCACTGTAACTTCAGGGAGATAATACTCACTATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGA-TTTGTATCTTCAATCTGC
* ** * ** *
97940485 TCTACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATCTGC
* * * *
97940529 TCCACTGCAACTTCAGGAAGATAAGATTCGTCATAATTTGTAGCTTTAATCTGT
1 TCCACTGCAACTTCAGGGAGAT-A-A---G-----ATTTGTATCTTCAATCTGC
* * * * * * *
97940583 TCCACTACAACTTCAAGGAAATGAGATTCGCTATCTTCAGTCTAC
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TATCTTCAATCTGC
* * * ** ** * **
97940628 TCCGCTGTAACTTTAACGAGATAAGGCTAGTGGCTTCAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATCTGC
* * * * * * *
97940672 TCCATTGCAACTTTAAGAAGATAAGATTCGTCATCTTCGATCTTC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGT-ATCTTCAATCTGC
* * * ** *
97940717 TCCACTACAACTTCAAGGAGATAAGATCTACAACTTCAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATCTGC
* *
97940761 TCCACTGCTACTTCAGGGAGATGAGATTTGT
1 TCCACTGCAACTTCAGGGAGATAAGATTTGT
97940792 GGATTCACCG
Statistics
Matches: 320, Mismatches: 104, Indels: 33
0.70 0.23 0.07
Matches are distributed among these distances:
42 2 0.01
43 1 0.00
44 161 0.50
45 122 0.38
46 1 0.00
49 2 0.01
52 1 0.00
54 30 0.09
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTGTATCTTCAATCTGC
Found at i:97940528 original size:133 final size:133
Alignment explanation
Indices: 97940290--97940782 Score: 325
Period size: 133 Copynumber: 3.6 Consensus size: 133
97940280 GGGGCTAGAC
* * * * *
97940290 TTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTCACTATCTTCAGTCTATTTC
1 TTGTAGCTTCAATCTACTCCACTGCAACTTCAGGGAAATAAGACTCACTATCTTCAGTCTATCTC
* * *
97940355 ACTGCAACTTTAGGGAGATGAGGTTAATGGTTACAATCTGCTCCACTACAAATTTAGGGAGATGA
66 ACTGCAACTTCAGGGAGATAAGGCTAATGGTTACAATCTGCTCCACTACAAATTTAGGGAGATGA
97940420 GAT
131 GAT
* * * * *
97940423 TTGTATCTTCAATCTACTCCACTGTAACTTCAGGGAGATAATACTCACTATCTTCAGTCT-GCTC
1 TTGTAGCTTCAATCTACTCCACTGCAACTTCAGGGAAATAAGACTCACTATCTTCAGTCTATCTC
** * * * *
97940487 TACTGCAACTTCAGGGAGATAAGGCTGGTGGCTT-CAGTCTGCTCCACTGCAACTTCAGGAAGAT
66 -ACTGCAACTTCAGGGAGATAAGGCTAATGG-TTACAATCTGCTCCACTACAAATTTAGG--G--
*
97940551 AAGATTCGTCATAAT
125 -AGA-T-G--A-GAT
* ** * * * * *
97940566 TTGTAGCTTTAATCTGTTCCACTACAACTTCAAGGAAATGAGATTCGCTATCTTCAGTCTA-CTC
1 TTGTAGCTTCAATCTACTCCACTGCAACTTCAGGGAAATAAGACTCACTATCTTCAGTCTATCT-
* * * ** * * * * * *
97940630 CGCTGTAACTTTAACGAGATAAGGCTAGTGGCTT-CAATCTGCTCCATTGCAACTTTAAGAAGAT
65 CACTGCAACTTCAGGGAGATAAGGCTAATGG-TTACAATCTGCTCCACTACAAATTTAGGGAGAT
*
97940694 AAGAT
129 GAGAT
* * * * * * * * * *
97940699 TCGTCATCTTCGATCTTCTCCACTACAACTTCAAGGAGATAAGA-TCTAC-AACTTCAATCT-GC
1 TTGT-AGCTTCAATCTACTCCACTGCAACTTCAGGGAAATAAGACTC-ACTATCTTCAGTCTATC
*
97940761 TCCACTGCTACTTCAGGGAGAT
64 T-CACTGCAACTTCAGGGAGAT
97940783 GAGATTTGTG
Statistics
Matches: 281, Mismatches: 62, Indels: 34
0.75 0.16 0.09
Matches are distributed among these distances:
132 2 0.01
133 131 0.47
134 36 0.13
135 1 0.00
137 1 0.00
138 6 0.02
139 1 0.00
140 1 0.00
142 1 0.00
143 100 0.36
144 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (133 bp):
TTGTAGCTTCAATCTACTCCACTGCAACTTCAGGGAAATAAGACTCACTATCTTCAGTCTATCTC
ACTGCAACTTCAGGGAGATAAGGCTAATGGTTACAATCTGCTCCACTACAAATTTAGGGAGATGA
GAT
Found at i:97949953 original size:22 final size:23
Alignment explanation
Indices: 97949927--97949971 Score: 83
Period size: 22 Copynumber: 2.0 Consensus size: 23
97949917 ACCTGATCAG
97949927 AATACGACACAT-AAGTGCCTGA
1 AATACGACACATAAAGTGCCTGA
97949949 AATACGACACATAAAGTGCCTGA
1 AATACGACACATAAAGTGCCTGA
97949972 TCAGTAAAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (23 bp):
AATACGACACATAAAGTGCCTGA
Found at i:97950188 original size:23 final size:24
Alignment explanation
Indices: 97950162--97950256 Score: 93
Period size: 28 Copynumber: 3.6 Consensus size: 24
97950152 AAATGTCCAA
97950162 CCAAAACACACCAG-TATAATCCT
1 CCAAAACACACCAGATATAATCCT
97950185 CCAAAACACACCAGTATCATATAATCCT
1 CCAAAACACACCAG----ATATAATCCT
*
97950213 CCCAAACACACCAGAATAATATAATCCAT
1 CCAAAACACACCAG----ATATAATCC-T
97950242 CCAAAACACACCAGA
1 CCAAAACACACCAGA
97950257 ATAGCACAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
23 14 0.23
25 1 0.02
28 33 0.53
29 14 0.23
ACGTcount: A:0.46, C:0.34, G:0.04, T:0.16
Consensus pattern (24 bp):
CCAAAACACACCAGATATAATCCT
Found at i:97950258 original size:29 final size:28
Alignment explanation
Indices: 97950176--97950259 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
97950166 AACACACCAG
* *
97950176 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
*
97950204 TATAATCCTCCCAAACACACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
97950232 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
97950260 GCACAAAGTG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.46, C:0.31, G:0.04, T:0.19
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:97954825 original size:20 final size:20
Alignment explanation
Indices: 97954800--97954841 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
97954790 CTCTTTTCAG
97954800 ACCCGTCTCAATGGGTTTTA
1 ACCCGTCTCAATGGGTTTTA
97954820 ACCCGTCTCAATGGGTTTTA
1 ACCCGTCTCAATGGGTTTTA
97954840 AC
1 AC
97954842 TTCTGCAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.33
Consensus pattern (20 bp):
ACCCGTCTCAATGGGTTTTA
Found at i:97956565 original size:19 final size:19
Alignment explanation
Indices: 97956541--97956586 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
97956531 TGTGACATTT
*
97956541 AATGCATATG-ATGCGATG
1 AATGCAAATGCATGCGATG
*
97956559 AAATGCAAATGCATGGGATG
1 -AATGCAAATGCATGCGATG
97956579 AATGCAAA
1 AATGCAAA
97956587 AAAAGACATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.41, C:0.11, G:0.26, T:0.22
Consensus pattern (19 bp):
AATGCAAATGCATGCGATG
Found at i:97960529 original size:3 final size:3
Alignment explanation
Indices: 97960521--97960567 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
97960511 TATGTAAATA
* *
97960521 AAT AAT AAT AGAT AA- AAT AAT AAT AAT GAT AGT AAT AAT AAAT AAT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
97960567 A
1 A
97960568 TATATAAGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
2 2 0.05
3 29 0.78
4 6 0.16
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:97960542 original size:18 final size:19
Alignment explanation
Indices: 97960516--97960567 Score: 63
Period size: 18 Copynumber: 2.7 Consensus size: 19
97960506 AAACCTATGT
97960516 AAATAAATAATAATAGATA-
1 AAAT-AATAATAATAGATAG
97960535 AAATAATAATAAT-GATAG
1 AAATAATAATAATAGATAG
*
97960553 TAATAATAAATAATA
1 AAATAAT-AATAATA
97960568 TATATAAGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 4 0.14
18 15 0.52
19 10 0.34
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (19 bp):
AAATAATAATAATAGATAG
Found at i:97960685 original size:18 final size:17
Alignment explanation
Indices: 97960664--97960702 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
97960654 GACTTTAGGT
97960664 ATATAAAAA-AAATAATA
1 ATATAAAAATAAA-AATA
97960681 GATATAAAAATAAAAATA
1 -ATATAAAAATAAAAATA
97960699 ATAT
1 ATAT
97960703 TAACTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.20
18 13 0.65
19 3 0.15
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (17 bp):
ATATAAAAATAAAAATA
Found at i:97960697 original size:21 final size:20
Alignment explanation
Indices: 97960663--97960701 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
97960653 TGACTTTAGG
*
97960663 TATATAAAAAAAATAATAGA
1 TATAAAAAAAAAATAATAGA
97960683 TATAAAAATAAAAATAATA
1 TATAAAAA-AAAAATAATA
97960702 TTAACTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (20 bp):
TATAAAAAAAAAATAATAGA
Found at i:97961790 original size:20 final size:22
Alignment explanation
Indices: 97961756--97961805 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
97961746 TTCGCAGGTA
97961756 TGGAG-GTACGAAGGC-G-ACG
1 TGGAGTGTACGAAGGCTGTACG
*
97961775 TGGAGTGTACGGAGGCTGTACG
1 TGGAGTGTACGAAGGCTGTACG
97961797 TGCGAGTGT
1 TG-GAGTGT
97961806 CAACGTGGCG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 5 0.19
20 9 0.35
21 1 0.04
22 5 0.19
23 6 0.23
ACGTcount: A:0.20, C:0.14, G:0.46, T:0.20
Consensus pattern (22 bp):
TGGAGTGTACGAAGGCTGTACG
Found at i:97964164 original size:21 final size:19
Alignment explanation
Indices: 97964134--97964180 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
97964124 ATCGAGAATT
*
97964134 GTTTTAATTTAGTAATTTATG
1 GTTTTTATTTA-TAA-TTATG
*
97964155 GTTTTTATTTATAATTCTG
1 GTTTTTATTTATAATTATG
97964174 GTTTTTA
1 GTTTTTA
97964181 AGAGTTTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 11 0.46
20 3 0.12
21 10 0.42
ACGTcount: A:0.23, C:0.02, G:0.13, T:0.62
Consensus pattern (19 bp):
GTTTTTATTTATAATTATG
Found at i:97965946 original size:25 final size:25
Alignment explanation
Indices: 97965917--97965966 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
97965907 TGTTGATTTG
97965917 ATTCTCACTTTCCTTT-TTTAATATA
1 ATTCTCAC-TTCCTTTATTTAATATA
*
97965942 ATTCTCACTTCCTTTATTTGATATA
1 ATTCTCACTTCCTTTATTTAATATA
97965967 TGAATTCTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.24, C:0.20, G:0.02, T:0.54
Consensus pattern (25 bp):
ATTCTCACTTCCTTTATTTAATATA
Found at i:97966169 original size:54 final size:54
Alignment explanation
Indices: 97966087--97966193 Score: 214
Period size: 54 Copynumber: 2.0 Consensus size: 54
97966077 TGTTATAGAG
97966087 AAGGTTTACTATAGTATAGATATCGATATGTTTGGTTCAAACTGATGTTTAAAT
1 AAGGTTTACTATAGTATAGATATCGATATGTTTGGTTCAAACTGATGTTTAAAT
97966141 AAGGTTTACTATAGTATAGATATCGATATGTTTGGTTCAAACTGATGTTTAAA
1 AAGGTTTACTATAGTATAGATATCGATATGTTTGGTTCAAACTGATGTTTAAA
97966194 CTAATTAAAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.40
Consensus pattern (54 bp):
AAGGTTTACTATAGTATAGATATCGATATGTTTGGTTCAAACTGATGTTTAAAT
Found at i:97966491 original size:25 final size:25
Alignment explanation
Indices: 97966463--97966520 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
97966453 CTTATTTCAT
*
97966463 TAAATAAAAAAAATTAAAAATATAA
1 TAAATAAAAAAAATTAAAAACATAA
* * *
97966488 TAAATCAAATATATTTAAAAACATAA
1 TAAAT-AAAAAAAATTAAAAACATAA
97966514 -AAATAAA
1 TAAATAAA
97966521 TATTAAAACA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 3 0.11
25 9 0.32
26 16 0.57
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (25 bp):
TAAATAAAAAAAATTAAAAACATAA
Found at i:97966506 original size:26 final size:24
Alignment explanation
Indices: 97966476--97966523 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
97966466 ATAAAAAAAA
*
97966476 TTAAAAATATAATAAATCAAATATAT
1 TTAAAAACATAA-AAAT-AAATATAT
97966502 TTAAAAACATAAAAATAAATAT
1 TTAAAAACATAAAAATAAATAT
97966524 TAAAACAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 4 0.19
26 11 0.52
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (24 bp):
TTAAAAACATAAAAATAAATATAT
Found at i:97966535 original size:22 final size:22
Alignment explanation
Indices: 97966494--97966552 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
97966484 ATAATAAATC
* *
97966494 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
97966514 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
97966536 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
97966553 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:97970629 original size:32 final size:32
Alignment explanation
Indices: 97970583--97970652 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
97970573 TTTTTTTCTC
97970583 TTTACTCACAAAATGAGTAAATTAGTTGGTTAT
1 TTTA-TCACAAAATGAGTAAATTAGTTGGTTAT
97970616 TTTATCACAAAATGAGTAAATTAGTTGGTTAT
1 TTTATCACAAAATGAGTAAATTAGTTGGTTAT
97970648 TTTAT
1 TTTAT
97970653 TAAAGTTTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 33 0.89
33 4 0.11
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (32 bp):
TTTATCACAAAATGAGTAAATTAGTTGGTTAT
Found at i:97972421 original size:16 final size:16
Alignment explanation
Indices: 97972400--97972433 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
97972390 TTGAAACAAC
97972400 ATAAA-TAAATAATTAA
1 ATAAATTAAA-AATTAA
97972416 ATAAATTAAAAATTAA
1 ATAAATTAAAAATTAA
97972432 AT
1 AT
97972434 TGGAAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAAATTAAAAATTAA
Found at i:97984102 original size:4 final size:4
Alignment explanation
Indices: 97984093--97984290 Score: 396
Period size: 4 Copynumber: 49.5 Consensus size: 4
97984083 CTAGCTAACT
97984093 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
97984141 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
97984189 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
97984237 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
97984285 CATA CA
1 CATA CA
97984291 GAGTCTTGTG
Statistics
Matches: 194, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 194 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:97985224 original size:99 final size:99
Alignment explanation
Indices: 97984934--97985212 Score: 425
Period size: 99 Copynumber: 2.8 Consensus size: 99
97984924 TTTGTGGTTT
* * * * *
97984934 TTTTTCTTAAGAATATATTGAACCTTTTGACGCAAAGAGAGATGACAGCCAAACACTCCACCCCA
1 TTTTTCTTAAGAATATATCGAACCTTTTGACGCAAAGAGAGATGACAGTCAAGCACCCCACCCCG
*
97984999 GTTACTCAACCCAATATACTCTTAATTTATTATA
66 GTTACTCAACCCAACATACTCTTAATTTATTATA
* * *
97985033 TTTTTCTTAAGAATATATCGAACCTTTTGACACGAAGAGAGATGGCAGTCAAGCACCCCACCCCG
1 TTTTTCTTAAGAATATATCGAACCTTTTGACGCAAAGAGAGATGACAGTCAAGCACCCCACCCCG
97985098 GTTACTCAACCCAACATACTCTTAATTTATTATA
66 GTTACTCAACCCAACATACTCTTAATTTATTATA
* *
97985132 TATTTT-TTAAGAATATATCGAACATTTTGACGCAAAGAGAGATGACAGTCAAGCACCCCACCCT
1 T-TTTTCTTAAGAATATATCGAACCTTTTGACGCAAAGAGAGATGACAGTCAAGCACCCCACCCC
* *
97985196 GGTTACTTAGCCCAACA
65 GGTTACTCAACCCAACA
97985213 CATTCCTAAT
Statistics
Matches: 163, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
99 159 0.98
100 4 0.02
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (99 bp):
TTTTTCTTAAGAATATATCGAACCTTTTGACGCAAAGAGAGATGACAGTCAAGCACCCCACCCCG
GTTACTCAACCCAACATACTCTTAATTTATTATA
Found at i:97997021 original size:24 final size:24
Alignment explanation
Indices: 97996994--97997039 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
97996984 GTGAAACTGT
* *
97996994 AAAGGCTGAAAAGCCGAAAAGTCA
1 AAAGGCTGAAAAACCAAAAAGTCA
*
97997018 AAAGGTTGAAAAACCAAAAAGT
1 AAAGGCTGAAAAACCAAAAAGT
97997040 AGGTTGTTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.54, C:0.13, G:0.22, T:0.11
Consensus pattern (24 bp):
AAAGGCTGAAAAACCAAAAAGTCA
Found at i:97997496 original size:27 final size:27
Alignment explanation
Indices: 97997428--97997517 Score: 87
Period size: 27 Copynumber: 3.3 Consensus size: 27
97997418 TATTTACTTA
* *
97997428 TAAAATGACT-GAAATACCCCCATAAGG
1 TAAAATGACTAGAAATA-CACCATAGGG
* *
97997455 TAAAATGACCA-AAATATCGCCATAGGG
1 TAAAATGACTAGAAATA-CACCATAGGG
*
97997482 TAAAATGA-TAGAAATACACCTGTAGGG
1 TAAAATGACTAGAAATACACC-ATAGGG
97997509 TAAAATGAC
1 TAAAATGAC
97997518 CGTAGTACCC
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
26 4 0.08
27 48 0.92
ACGTcount: A:0.46, C:0.17, G:0.18, T:0.20
Consensus pattern (27 bp):
TAAAATGACTAGAAATACACCATAGGG
Found at i:97997530 original size:27 final size:27
Alignment explanation
Indices: 97997428--97997544 Score: 76
Period size: 27 Copynumber: 4.3 Consensus size: 27
97997418 TATTTACTTA
* * ** *
97997428 TAAAATGACTGAAATACCCCCATAAGG
1 TAAAATGACAGAAATACACCTGTAGGG
* *
97997455 TAAAATGACCA-AAATATCGCC-ATAGGG
1 TAAAATGA-CAGAAATA-CACCTGTAGGG
*
97997482 TAAAATGATAGAAATACACCTGTAGGG
1 TAAAATGACAGAAATACACCTGTAGGG
* * * * * *
97997509 TAAAATGACCGTAGTACCCCTGTAAGA
1 TAAAATGACAGAAATACACCTGTAGGG
97997536 TAAAATGAC
1 TAAAATGAC
97997545 TGTTTTACCT
Statistics
Matches: 73, Mismatches: 13, Indels: 8
0.78 0.14 0.09
Matches are distributed among these distances:
26 4 0.05
27 65 0.89
28 4 0.05
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.21
Consensus pattern (27 bp):
TAAAATGACAGAAATACACCTGTAGGG
Found at i:97997566 original size:27 final size:27
Alignment explanation
Indices: 97997536--97997770 Score: 220
Period size: 27 Copynumber: 8.7 Consensus size: 27
97997526 CCCTGTAAGA
* *
97997536 TAAAATGACTGTTTTACCTTTATGTGT
1 TAAAATGACTGTTTTGCCCTTATGTGT
* * * *
97997563 TAAAATGACTATTTTGTCCTCATGTGA
1 TAAAATGACTGTTTTGCCCTTATGTGT
*
97997590 TAAAATGAC-GATTTTGCCCCTATGTGT
1 TAAAATGACTG-TTTTGCCCTTATGTGT
* *
97997617 TAAAATAACTATTTTGCCCTTATGTGT
1 TAAAATGACTGTTTTGCCCTTATGTGT
* * *
97997644 TAAAATAACAGTTTTGCCTTTATGTGT
1 TAAAATGACTGTTTTGCCCTTATGTGT
* * * *
97997671 TAAAATGACGGTTTTTCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGT
* * * *
97997698 TAAAATGACAGTTTTGCTCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGTGT
* * *
97997725 TAAAATGACTATTTTGCCCTTACGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGT
** *
97997752 TAGGATGATTGTTTTGCCC
1 TAAAATGACTGTTTTGCCC
97997771 CTATATGATT
Statistics
Matches: 169, Mismatches: 37, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
27 169 1.00
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.41
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGT
Found at i:97997753 original size:54 final size:54
Alignment explanation
Indices: 97997536--97997753 Score: 251
Period size: 54 Copynumber: 4.0 Consensus size: 54
97997526 CCCTGTAAGA
* * * * *
97997536 TAAAATGACTGTTTTACCTTTATGTGTTAAAATGACTATTTTGTCCTCATGTGA
1 TAAAATGACAGTTTTGCCTTTATGTGTTAAAATGACTATTTTGCCCTTATGTGG
** * *
97997590 TAAAATGAC-GATTTTGCCCCTATGTGTTAAAATAACTATTTTGCCCTTATGTGT
1 TAAAATGACAG-TTTTGCCTTTATGTGTTAAAATGACTATTTTGCCCTTATGTGG
* ** * *
97997644 TAAAATAACAGTTTTGCCTTTATGTGTTAAAATGACGGTTTTTCCCTTATATGG
1 TAAAATGACAGTTTTGCCTTTATGTGTTAAAATGACTATTTTGCCCTTATGTGG
* * *
97997698 TAAAATGACAGTTTTG-CTCTTATGAGGTAAAATGACTATTTTGCCCTTACGTGG
1 TAAAATGACAGTTTTGCCT-TTATGTGTTAAAATGACTATTTTGCCCTTATGTGG
97997752 TA
1 TA
97997754 GGATGATTGT
Statistics
Matches: 137, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
53 3 0.02
54 133 0.97
55 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (54 bp):
TAAAATGACAGTTTTGCCTTTATGTGTTAAAATGACTATTTTGCCCTTATGTGG
Found at i:97998118 original size:18 final size:18
Alignment explanation
Indices: 97998083--97998128 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
97998073 TACTGCTTAT
97998083 TGTTACTGCACTAATTAC
1 TGTTACTGCACTAATTAC
* **
97998101 TGTTATTGCACTGTTTAC
1 TGTTACTGCACTAATTAC
*
97998119 TATTACTGCA
1 TGTTACTGCA
97998129 ATGGGTTAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.13, T:0.43
Consensus pattern (18 bp):
TGTTACTGCACTAATTAC
Found at i:98000868 original size:3 final size:3
Alignment explanation
Indices: 98000860--98000902 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
98000850 TGTAATGAAC
* *
98000860 TAT TAT TAT TAT TCT TAT AAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
98000903 TTAAGAACAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:98011081 original size:27 final size:27
Alignment explanation
Indices: 98011051--98011124 Score: 121
Period size: 27 Copynumber: 2.7 Consensus size: 27
98011041 TTATTTACTT
* *
98011051 GTAAAACGACCGAAATACCCCCATAGG
1 GTAAAATGACTGAAATACCCCCATAGG
*
98011078 GTAAAATAACTGAAATACCCCCATAGG
1 GTAAAATGACTGAAATACCCCCATAGG
98011105 GTAAAATGACTGAAATACCC
1 GTAAAATGACTGAAATACCC
98011125 TTGTAAGGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.43, C:0.24, G:0.16, T:0.16
Consensus pattern (27 bp):
GTAAAATGACTGAAATACCCCCATAGG
Found at i:98011134 original size:27 final size:27
Alignment explanation
Indices: 98011062--98011140 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
98011052 TAAAACGACC
*
98011062 GAAATACCCCCATAGGGTAAAATAACT
1 GAAATACCCCCATAAGGTAAAATAACT
* *
98011089 GAAATACCCCCATAGGGTAAAATGACT
1 GAAATACCCCCATAAGGTAAAATAACT
***
98011116 GAAATACCCTTGTAAGGTAAAATAA
1 GAAATACCCCCATAAGGTAAAATAA
98011141 TTGTTTTGCC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.20
Consensus pattern (27 bp):
GAAATACCCCCATAAGGTAAAATAACT
Found at i:98011328 original size:27 final size:27
Alignment explanation
Indices: 98011104--98011339 Score: 174
Period size: 27 Copynumber: 8.8 Consensus size: 27
98011094 ACCCCCATAG
*** * * *
98011104 GGTAAAATGACTGAAATACCCTTGTAA
1 GGTAAAATGACTGTTTTGCCCTTATAT
* * * *
98011131 GGTAAAATAATTGTTTTGCCTTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATAT
* *
98011158 GTTAAAATGA-TGATTTTGCCCTTATGT
1 GGTAAAATGACTG-TTTTGCCCTTATAT
* * * *
98011185 GATAAAATGA-TGATTTAGCCCTTGTGT
1 GGTAAAATGACTG-TTTTGCCCTTATAT
* *
98011212 GGCAAAATAAC-GTTTTTG-CCTTATAT
1 GGTAAAATGACTG-TTTTGCCCTTATAT
* * * *
98011238 GTTAAAATAACAGTTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATAT
* *
98011265 GGTAAAATGACGGTTTTGCCCTTATAA
1 GGTAAAATGACTGTTTTGCCCTTATAT
*
98011292 GGTAAAATGACTATTTTGCCCTTATAT
1 GGTAAAATGACTGTTTTGCCCTTATAT
**
98011319 GGTAGGATGACTGTTTTGCCC
1 GGTAAAATGACTGTTTTGCCC
98011340 CTATGTGATG
Statistics
Matches: 168, Mismatches: 37, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
26 22 0.13
27 146 0.87
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATAT
Found at i:98013709 original size:20 final size:20
Alignment explanation
Indices: 98013672--98013720 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
98013662 TTAAATTCAA
*
98013672 AAAGATAAATAGAAATAATT
1 AAAGATAAATAGAAATAAAT
*
98013692 AAAGATAATTA-AATATAAAT
1 AAAGATAAATAGAA-ATAAAT
*
98013712 AAACATAAA
1 AAAGATAAA
98013721 AGGTAAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.24
Consensus pattern (20 bp):
AAAGATAAATAGAAATAAAT
Found at i:98021082 original size:27 final size:27
Alignment explanation
Indices: 98021052--98021125 Score: 121
Period size: 27 Copynumber: 2.7 Consensus size: 27
98021042 TTATTTACTT
* *
98021052 GTAAAACGACCGAAATACCCCCATAGG
1 GTAAAATGACTGAAATACCCCCATAGG
*
98021079 GTAAAATAACTGAAATACCCCCATAGG
1 GTAAAATGACTGAAATACCCCCATAGG
98021106 GTAAAATGACTGAAATACCC
1 GTAAAATGACTGAAATACCC
98021126 TTGTAAGGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.43, C:0.24, G:0.16, T:0.16
Consensus pattern (27 bp):
GTAAAATGACTGAAATACCCCCATAGG
Found at i:98021135 original size:27 final size:27
Alignment explanation
Indices: 98021063--98021141 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
98021053 TAAAACGACC
*
98021063 GAAATACCCCCATAGGGTAAAATAACT
1 GAAATACCCCCATAAGGTAAAATAACT
* *
98021090 GAAATACCCCCATAGGGTAAAATGACT
1 GAAATACCCCCATAAGGTAAAATAACT
***
98021117 GAAATACCCTTGTAAGGTAAAATAA
1 GAAATACCCCCATAAGGTAAAATAA
98021142 TTGTTTTACC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.20
Consensus pattern (27 bp):
GAAATACCCCCATAAGGTAAAATAACT
Found at i:98021281 original size:27 final size:27
Alignment explanation
Indices: 98021144--98021347 Score: 167
Period size: 27 Copynumber: 7.6 Consensus size: 27
98021134 TAAAATAATT
* * * *
98021144 GTTTTACCTTTATGTGTTAAAATGATG
1 GTTTTGCCCTTATGTGGTAAAATGACG
* * *
98021171 ATTTTGCCCTTATGTGATAAAATGATG
1 GTTTTGCCCTTATGTGGTAAAATGACG
* * * * *
98021198 ATTTAGCCCTTGTGTGGCAAAATAACG
1 GTTTTGCCCTTATGTGGTAAAATGACG
* * * * *
98021225 TTTTTG-CCTTATATGTTAAAATAACA
1 GTTTTGCCCTTATGTGGTAAAATGACG
98021251 GTTTTGCCCTTATGTGGTAAAATGACG
1 GTTTTGCCCTTATGTGGTAAAATGACG
** *
98021278 GTTTTGCCCTTATAAGGTAAAATGACT
1 GTTTTGCCCTTATGTGGTAAAATGACG
* * ** *
98021305 ATTTTGCCCTTATATGGTAGGATGACT
1 GTTTTGCCCTTATGTGGTAAAATGACG
*
98021332 GTTTTGCCCCTATGTG
1 GTTTTGCCCTTATGTG
98021348 ATGTATGTTT
Statistics
Matches: 144, Mismatches: 32, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
26 20 0.14
27 124 0.86
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40
Consensus pattern (27 bp):
GTTTTGCCCTTATGTGGTAAAATGACG
Found at i:98023710 original size:20 final size:20
Alignment explanation
Indices: 98023673--98023721 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
98023663 TTAAATTCAA
*
98023673 AAAGATAAATAGAAATAATT
1 AAAGATAAATAGAAATAAAT
*
98023693 AAAGATAATTA-AATATAAAT
1 AAAGATAAATAGAA-ATAAAT
*
98023713 AAACATAAA
1 AAAGATAAA
98023722 AGTTAAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.24
Consensus pattern (20 bp):
AAAGATAAATAGAAATAAAT
Found at i:98038773 original size:5 final size:5
Alignment explanation
Indices: 98038758--98038812 Score: 92
Period size: 5 Copynumber: 10.6 Consensus size: 5
98038748 ATAACTCATA
98038758 AATTCC AATTC AATTC AATTC AATTC AATTC AATTC AATTC AATTC AATTTC
1 AATT-C AATTC AATTC AATTC AATTC AATTC AATTC AATTC AATTC AA-TTC
98038810 AAT
1 AAT
98038813 ACTACAATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
5 39 0.81
6 9 0.19
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
AATTC
Found at i:98044906 original size:21 final size:22
Alignment explanation
Indices: 98044856--98044906 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
98044846 ATCGTATAGG
98044856 TTTACAATATATTTTAATTTAAT
1 TTTA-AATATATTTTAATTTAAT
* * *
98044879 ATT-AATATTTTTTAA-TTATT
1 TTTAAATATATTTTAATTTAAT
98044899 TTTAAATA
1 TTTAAATA
98044907 AAAGCATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
20 6 0.26
21 15 0.65
23 2 0.09
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTAAATATATTTTAATTTAAT
Found at i:98045269 original size:16 final size:18
Alignment explanation
Indices: 98045226--98045262 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
98045216 AATTAAAAAG
98045226 AAAA-ATATATAATATTT
1 AAAATATATATAATATTT
98045243 AAAATATATATAAT-TTT
1 AAAATATATATAATATTT
98045260 AAA
1 AAA
98045263 CTAATATCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AAAATATATATAATATTT
Found at i:98045269 original size:18 final size:19
Alignment explanation
Indices: 98045229--98045269 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
98045219 TAAAAAGAAA
98045229 AATATATAATATTTAAAAT
1 AATATATAATATTTAAAAT
*
98045248 -ATATATAAT-TTTAAACT
1 AATATATAATATTTAAAAT
98045265 AATAT
1 AATAT
98045270 CCTCCTGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
AATATATAATATTTAAAAT
Found at i:98046744 original size:20 final size:22
Alignment explanation
Indices: 98046688--98046744 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 22
98046678 TTAGATTGGT
98046688 TTTTTTTTAAAT--GATTTTGA
1 TTTTTTTTAAATAGGATTTTGA
*
98046708 TTTTTTTTAGAGTTAGGATTTT-A
1 TTTTTTTTA-A-ATAGGATTTTGA
98046731 -TTTTTTTAAATAGG
1 TTTTTTTTAAATAGG
98046745 GTTAGGGTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
20 13 0.42
21 2 0.06
22 9 0.29
23 1 0.03
24 6 0.19
ACGTcount: A:0.25, C:0.00, G:0.14, T:0.61
Consensus pattern (22 bp):
TTTTTTTTAAATAGGATTTTGA
Found at i:98053716 original size:42 final size:43
Alignment explanation
Indices: 98053610--98053779 Score: 193
Period size: 43 Copynumber: 4.0 Consensus size: 43
98053600 TCATAAAATT
* * * *
98053610 CCAACGTCCCAGACATGGTCTTATATGTAATCACATATCGATA
1 CCAACGTCCCAGACATGGTCTTACACGCAATCACATATCGATG
*
98053653 CC-ACTGTCCCAGACATGGTCTTACACG-AA-CTCATATACGATG
1 CCAAC-GTCCCAGACATGGTCTTACACGCAATCACATAT-CGATG
* * *
98053695 CCAATGTCCCAGACATGGTCTTACACGCAAATCACAAATTGATG
1 CCAACGTCCCAGACATGGTCTTACACGC-AATCACATATCGATG
* * *
98053739 CCAACGTCCCAGACGTGGTCTTACATGAAATCACATATCGA
1 CCAACGTCCCAGACATGGTCTTACACGCAATCACATATCGA
98053780 AATCATATGT
Statistics
Matches: 107, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
41 6 0.06
42 32 0.30
43 34 0.32
44 30 0.28
45 5 0.05
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (43 bp):
CCAACGTCCCAGACATGGTCTTACACGCAATCACATATCGATG
Found at i:98059862 original size:4 final size:4
Alignment explanation
Indices: 98059853--98059904 Score: 50
Period size: 4 Copynumber: 13.0 Consensus size: 4
98059843 TTTTCTGCCG
* * * * * *
98059853 TATT TATT TATT TATT TATT TATT CATA TACT TACT CATT TATT TACT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
98059901 TATT
1 TATT
98059905 ACCCTTTTAT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.63
Consensus pattern (4 bp):
TATT
Found at i:98062933 original size:16 final size:17
Alignment explanation
Indices: 98062912--98062955 Score: 63
Period size: 16 Copynumber: 2.5 Consensus size: 17
98062902 TTTTTCCATT
98062912 CATTACATTGCATC-TG
1 CATTACATTGCATCATG
98062928 CATTACATTGCATCATATG
1 CATTACATTGCATC--ATG
98062947 CATTACATT
1 CATTACATT
98062956 TTTTTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.56
19 11 0.44
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (17 bp):
CATTACATTGCATCATG
Found at i:98065836 original size:44 final size:45
Alignment explanation
Indices: 98065763--98066220 Score: 239
Period size: 44 Copynumber: 10.0 Consensus size: 45
98065753 GGTCATCATG
* *
98065763 GCGAATCTTATCTCTCTGAAATTGTAGTGGAGCAGATTGAAGCCA
1 GCGAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCA
* * * **
98065808 -CTAATCTTATCTCCCTGATGTTGCAGTGGAGCAGATTGAAGATA
1 GCGAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCA
* * * *
98065852 GCGAATCTTATCTCTCTGAAGTTGCAATAGAGCAGATTAAAGCTA
1 GCGAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCA
** * * * ** *
98065897 -TAAATCTTATAC-CTCTGAAGTTTCAATAGG-TCAGATCAAATCTACCA
1 GCGAATCTTAT-CTCTCTGAAGTTGCAGT-GGAGCAGATTGAA---GCCA
* *
98065944 TGTTGAATCTTATCTCTCTGAAGTTGCTA-TTGAGCAGATTGAAGCCA
1 -G-CGAATCTTATCTCTCTGAAGTTGC-AGTGGAGCAGATTGAAGCCA
* ** * * * *
98065991 -CCAGCCTTATCTTTCTGAAGTTGCAGCGGAGCAGACTGAAGACA
1 GCGAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCA
* * * * * **
98066035 TCGAATCTTATTTCCCTAAAGTTGTAGTGGAATAGATTGAAGCTACAAATCA
1 GCGAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAG---C----CA
* * *
98066087 TGGGGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCA
1 --GCGAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCA
* ** * ** * * *
98066134 -CCAGCCTTATCTC-CTAGAAGTTACAGCAGAGTAGACTGAAGACA
1 GCGAATCTTATCTCTCT-GAAGTTGCAGTGGAGCAGATTGAAGCCA
* * * *
98066178 GCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGC
1 GCGAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGC
98066221 TACAAATTAT
Statistics
Matches: 307, Mismatches: 80, Indels: 52
0.70 0.18 0.12
Matches are distributed among these distances:
43 3 0.01
44 130 0.42
45 95 0.31
46 2 0.01
47 7 0.02
49 2 0.01
50 28 0.09
51 2 0.01
52 2 0.01
54 36 0.12
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (45 bp):
GCGAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCA
Found at i:98065885 original size:89 final size:89
Alignment explanation
Indices: 98065763--98066045 Score: 241
Period size: 89 Copynumber: 3.1 Consensus size: 89
98065753 GGTCATCATG
* * * * * *
98065763 GCGAATCTTATCTCTCTGAAATTGTAGTGGAGCAGATTGAAGCCACTAATCTTATCTCCCTGATG
1 GCGAATCTTATCTCTCTGAAGTTGCAATAGAGCAGATTGAAGCCACTAATCTTATCTCTCTGAAG
98065828 TTGCAGTGGAGCAGATTGAAGATA
66 TTGCAGTGGAGCAGATTGAAGATA
* *
98065852 GCGAATCTTATCTCTCTGAAGTTGCAATAGAGCAGATTAAAGCTA-TAAATCTTATAC-CTCTGA
1 GCGAATCTTATCTCTCTGAAGTTGCAATAGAGCAGATTGAAGCCACT-AATCTTAT-CTCTCTGA
* * * **
98065915 AGTTTCAATAGGTCAGATCAAATCT-ACCAT-
64 AGTTGCAGT-GG--AG--CAGAT-TGAAGATA
* * * * ** *
98065945 GTTGAATCTTATCTCTCTGAAGTTGCTATTGAGCAGATTGAAGCCACCAGCCTTATCTTTCTGAA
1 G-CGAATCTTATCTCTCTGAAGTTGCAATAGAGCAGATTGAAGCCACTAATCTTATCTCTCTGAA
* * *
98066010 GTTGCAGCGGAGCAGACTGAAGACA
65 GTTGCAGTGGAGCAGATTGAAGATA
*
98066035 TCGAATCTTAT
1 GCGAATCTTAT
98066046 TTCCCTAAAG
Statistics
Matches: 149, Mismatches: 32, Indels: 26
0.72 0.15 0.13
Matches are distributed among these distances:
88 2 0.01
89 72 0.48
90 3 0.02
91 2 0.01
92 2 0.01
93 4 0.03
94 63 0.42
95 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (89 bp):
GCGAATCTTATCTCTCTGAAGTTGCAATAGAGCAGATTGAAGCCACTAATCTTATCTCTCTGAAG
TTGCAGTGGAGCAGATTGAAGATA
Found at i:98066122 original size:143 final size:143
Alignment explanation
Indices: 98065948--98066636 Score: 777
Period size: 143 Copynumber: 4.8 Consensus size: 143
98065938 CTACCATGTT
* * * **
98065948 GAATCTTATCTCTCTGAAGTTGCTA-TTGAGCAGATTGAAGCCACCAGCCTTATCTTTCTGAAGT
1 GAATCTTATCTCCCTAAAGTTGC-AGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGT
* * *
98066012 TGCAGCGGAGCAGACTGAAGACATCGAATCTTATTTCCCTAAAGTTGTAGTGGAATAGATTGAAG
65 TGCAGCGGAGTAGACTGAAGACATCGAATCTTATTTCCCTAAAGTTGTAGTGGAACAGATTAAAG
* ***
98066077 CTACAAATCATGGG
130 CTACAAATTATAAC
98066091 GAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCT-CCTAGAAGT
1 GAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCT-GAAGT
* * * * *
98066155 TACAGCAGAGTAGACTGAAGACAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAG
65 TGCAGCGGAGTAGACTGAAGACATCGAATCTTATTTCCCTAAAGTTGTAGTGGAACAGATTAAAG
98066220 CTACAAATTATAAC
130 CTACAAATTATAAC
* * * * * * *
98066234 GAATCTTATCTTCTTGAAGTTACGGTAGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGCT
1 GAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTT
* * * * *
98066299 ACAGCGGAGTAGACTAAAGAC-TGCGAATCTTATTTCCCTGATA-TTGCAATGGAACAGATTAAA
66 GCAGCGGAGTAGACTGAAGACAT-CGAATCTTATTTCCCT-AAAGTTGTAGTGGAACAGATTAAA
*
98066362 GCTACAAATTATGAC
129 GCTACAAATTATAAC
* * * * *
98066377 GAATCTTATCTTCCTAAAGTTTCAGTGGAGTAGATTGAAGCCATCAGCCTTATCTCCCTAAAGTT
1 GAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTT
* * ** * * *
98066442 GTAGCGAAACAGACTGAATACAGCGAATCTTATTTCCCTAACA-TTGCAGTGGAACAGGA-TAAA
66 GCAGCGGAGTAGACTGAAGACATCGAATCTTATTTCCCTAA-AGTTGTAGTGGAACA-GATTAAA
*
98066505 GCTACAAATTATAGC
129 GCTACAAATTATAAC
* * *
98066520 GAATCTTATCAT-CCTAAAGTTGCAGTGAAGCAGATTAAAGCCACCAGTCTTATCTCCCTGAAGT
1 GAATCTTATC-TCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGT
* * * *
98066584 TGCAGCGAAGTAGATTGAA-AC-TAC-AAGTCTTATTTCTCTAAAGTTGTGGTGGA
65 TGCAGCGGAGTAGACTGAAGACAT-CGAA-TCTTATTTCCCTAAAGTTGTAGTGGA
98066637 GGGGATCAAA
Statistics
Matches: 468, Mismatches: 66, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
141 3 0.01
142 28 0.06
143 430 0.92
144 7 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (143 bp):
GAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTT
GCAGCGGAGTAGACTGAAGACATCGAATCTTATTTCCCTAAAGTTGTAGTGGAACAGATTAAAGC
TACAAATTATAAC
Found at i:98066586 original size:44 final size:44
Alignment explanation
Indices: 98066523--98066629 Score: 112
Period size: 44 Copynumber: 2.4 Consensus size: 44
98066513 TTATAGCGAA
* *
98066523 TCTTATCATCCTAAAGTTGCAGTGAAGCAGATT-AAAGCCACCAG
1 TCTTATCATCCTAAAGTTGCAGCGAAGCAGATTGAAA-CCACAAG
* * *
98066567 TCTTATC-TCCCTGAAGTTGCAGCGAAGTAGATTGAAACTACAAG
1 TCTTATCAT-CCTAAAGTTGCAGCGAAGCAGATTGAAACCACAAG
*
98066611 TCTTAT-TTCTCTAAAGTTG
1 TCTTATCATC-CTAAAGTTG
98066630 TGGTGGAGGG
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
43 2 0.04
44 48 0.91
45 3 0.06
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (44 bp):
TCTTATCATCCTAAAGTTGCAGCGAAGCAGATTGAAACCACAAG
Found at i:98077681 original size:3 final size:3
Alignment explanation
Indices: 98077675--98077722 Score: 87
Period size: 3 Copynumber: 15.7 Consensus size: 3
98077665 CTGTTGTTTG
98077675 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
98077721 TT
1 TT
98077723 CAAGCATTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:98078387 original size:25 final size:25
Alignment explanation
Indices: 98078359--98078408 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
98078349 TTTCAAAGTA
98078359 AGGCAATATTCTGTGTTTAGAGACT
1 AGGCAATATTCTGTGTTTAGAGACT
98078384 AGGCAATATTCTGTGTTTAGAGACT
1 AGGCAATATTCTGTGTTTAGAGACT
98078409 CGAGAAAGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (25 bp):
AGGCAATATTCTGTGTTTAGAGACT
Found at i:98083260 original size:13 final size:13
Alignment explanation
Indices: 98083242--98083275 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
98083232 TGATCTGCTG
98083242 TAATGTGTGTGGA
1 TAATGTGTGTGGA
*
98083255 TAATGTATGTGGA
1 TAATGTGTGTGGA
*
98083268 TAAGGTGT
1 TAATGTGT
98083276 TGAAATTGGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.38
Consensus pattern (13 bp):
TAATGTGTGTGGA
Found at i:98091559 original size:51 final size:51
Alignment explanation
Indices: 98091481--98091692 Score: 361
Period size: 51 Copynumber: 4.2 Consensus size: 51
98091471 ATTTCTGATC
*
98091481 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
98091532 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
98091583 AGTGATAAATGATAAGTGGTAGCTTTAGCTACATTTATCTGATCAATGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
98091634 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
98091685 AGTGATAA
1 AGTGATAA
98091693 ATGTGATCAG
Statistics
Matches: 150, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 150 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.32
Consensus pattern (51 bp):
AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
Found at i:98091643 original size:102 final size:102
Alignment explanation
Indices: 98091481--98091695 Score: 403
Period size: 102 Copynumber: 2.1 Consensus size: 102
98091471 ATTTCTGATC
* *
98091481 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGTGATA
1 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGTGATA
98091546 AGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
66 AGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
*
98091583 AGTGATAAATGATAAGTGGTAGCTTTAGCTACATTTATCTGATCAATGACAAGTGATAAGTGATA
1 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGTGATA
98091648 AGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
66 AGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
98091685 AGTGATAAATG
1 AGTGATAAATG
98091696 TGATCAGTGT
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 110 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.32
Consensus pattern (102 bp):
AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAGTGATA
AGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACA
Found at i:98093762 original size:28 final size:28
Alignment explanation
Indices: 98093709--98093815 Score: 143
Period size: 28 Copynumber: 4.0 Consensus size: 28
98093699 CATTTTGTGC
98093709 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
98093738 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
98093766 GATACTGGTGTGTTTTGGAGGA-T-TA-
1 TATTCTGGTGTGTTTTGGAGGATTATAT
98093791 TA--CTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
98093816 CTGGTGTGTT
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
23 18 0.25
24 1 0.01
25 3 0.04
26 2 0.03
27 1 0.01
28 28 0.39
29 18 0.25
ACGTcount: A:0.19, C:0.04, G:0.32, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:98093810 original size:51 final size:56
Alignment explanation
Indices: 98093713--98093815 Score: 153
Period size: 51 Copynumber: 1.9 Consensus size: 56
98093703 TTGTGCTATT
98093713 CTGGTGTGTTTTGGATGGATTATATTATTCTGGTGTGTTTGGGAGGATTATATGATA
1 CTGGTGTGTTTTGGATGGATTATATTA-TCTGGTGTGTTTGGGAGGATTATATGATA
*
98093770 CTGGTGTGTTTTGGA-GGA-T-TA-TA-CTGGTGTGTTTTGGAGGATTATA
1 CTGGTGTGTTTTGGATGGATTATATTATCTGGTGTGTTTGGGAGGATTATA
98093816 CTGGTGTGTT
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
51 22 0.49
53 2 0.04
54 2 0.04
55 1 0.02
56 3 0.07
57 15 0.33
ACGTcount: A:0.18, C:0.04, G:0.33, T:0.45
Consensus pattern (56 bp):
CTGGTGTGTTTTGGATGGATTATATTATCTGGTGTGTTTGGGAGGATTATATGATA
Found at i:98093824 original size:25 final size:23
Alignment explanation
Indices: 98093713--98093829 Score: 126
Period size: 23 Copynumber: 4.6 Consensus size: 23
98093703 TTGTGCTATT
98093713 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-T-TA-TA
*
98093740 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---AT-T-ATA
98093770 CTGGTGTGTTTTGGAGGATTATA
1 CTGGTGTGTTTTGGAGGATTATA
98093793 CTGGTGTGTTTTGGAGGATTATA
1 CTGGTGTGTTTTGGAGGATTATA
98093816 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
98093830 TTGGACGTTT
Statistics
Matches: 82, Mismatches: 2, Indels: 14
0.84 0.02 0.14
Matches are distributed among these distances:
23 40 0.49
24 1 0.01
25 2 0.02
28 18 0.22
29 14 0.17
30 5 0.06
31 2 0.02
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.45
Consensus pattern (23 bp):
CTGGTGTGTTTTGGAGGATTATA
Found at i:98094088 original size:21 final size:21
Alignment explanation
Indices: 98094031--98094091 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
98094021 ATGCACTTTA
* *
98094031 TGTGTCGTATTTCAAGCACCTTG
1 TGTGTCG--TTTCAGGCACCTCG
**
98094054 TGTGTCGTAGCAGGCACCTCG
1 TGTGTCGTTTCAGGCACCTCG
*
98094075 TGTGTTGTTTCAGGCAC
1 TGTGTCGTTTCAGGCAC
98094092 TTATATGCCG
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
21 24 0.77
23 7 0.23
ACGTcount: A:0.15, C:0.23, G:0.28, T:0.34
Consensus pattern (21 bp):
TGTGTCGTTTCAGGCACCTCG
Found at i:98098592 original size:23 final size:25
Alignment explanation
Indices: 98098565--98098616 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 25
98098555 CTTTAAGAAT
**
98098565 AAATAGATAT-TTTTCAAA-TTAGA
1 AAATAGATATATTTAAAAAGTTAGA
*
98098588 AAATATATATATTTAAAAAGTTAGA
1 AAATAGATATATTTAAAAAGTTAGA
98098613 AAAT
1 AAAT
98098617 TTGTAACTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 9 0.38
24 6 0.25
25 9 0.38
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.37
Consensus pattern (25 bp):
AAATAGATATATTTAAAAAGTTAGA
Found at i:98099233 original size:11 final size:11
Alignment explanation
Indices: 98099219--98099266 Score: 60
Period size: 11 Copynumber: 4.4 Consensus size: 11
98099209 AAATGGTAGG
*
98099219 AAAATAGTAAA
1 AAAATAATAAA
* *
98099230 AAAATAACAAG
1 AAAATAATAAA
98099241 AAAATAATAAA
1 AAAATAATAAA
*
98099252 AAAACAATAAA
1 AAAATAATAAA
98099263 AAAA
1 AAAA
98099267 AGGGAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.79, C:0.04, G:0.04, T:0.12
Consensus pattern (11 bp):
AAAATAATAAA
Found at i:98103679 original size:26 final size:25
Alignment explanation
Indices: 98103617--98103679 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 25
98103607 CATAAGTATG
*
98103617 AAATAAATAATGTAAAAAATTAAAGT
1 AAATAAATAA-GTAAAAAATTAAAAT
98103643 AAATAATAATAA-TAAAAAATTTTAAAAT
1 AAAT-A-AATAAGTAAAAAA--TTAAAAT
98103671 AAATAAATA
1 AAATAAATA
98103680 GAGTTCAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
26 15 0.47
27 2 0.06
28 15 0.47
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (25 bp):
AAATAAATAAGTAAAAAATTAAAAT
Found at i:98103730 original size:23 final size:22
Alignment explanation
Indices: 98103686--98103745 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
98103676 AATAGAGTTC
98103686 AAAATAAGGTATATAAAACAATTT
1 AAAATAA-GTA-ATAAAACAATTT
98103710 AAAATAAGTAATCAAAACAATTT
1 AAAATAAGTAAT-AAAACAATTT
* *
98103733 TAAATAAATAATA
1 AAAATAAGTAATA
98103746 TATAATAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 3 0.09
23 23 0.70
24 7 0.21
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (22 bp):
AAAATAAGTAATAAAACAATTT
Found at i:98104901 original size:15 final size:14
Alignment explanation
Indices: 98104881--98104914 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
98104871 GATTCGTAAT
98104881 AAAATAAAAAGATAA
1 AAAATAAAAAGA-AA
*
98104896 AAAATAAAAATAAA
1 AAAATAAAAAGAAA
98104910 AAAAT
1 AAAAT
98104915 GAAATGAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (14 bp):
AAAATAAAAAGAAA
Found at i:98104929 original size:18 final size:19
Alignment explanation
Indices: 98104897--98104946 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
98104887 AAAAGATAAA
*
98104897 AAATAAAAATAAAAA-AATG
1 AAATAGAAATAAAAACAA-G
*
98104916 AAAT-GAAATGAAAACAAG
1 AAATAGAAATAAAAACAAG
98104934 AAATAGAAATAAA
1 AAATAGAAATAAA
98104947 TAGTCAACCT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.74, C:0.02, G:0.10, T:0.14
Consensus pattern (19 bp):
AAATAGAAATAAAAACAAG
Found at i:98105108 original size:24 final size:24
Alignment explanation
Indices: 98105074--98105137 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 24
98105064 TGCTTTTGCT
98105074 TGTTTTCTTGCTTTGTTTCTACTC
1 TGTTTTCTTGCTTTGTTTCTACTC
* * *
98105098 TGTTTTTTTGC-CT-TTT-TGCTC
1 TGTTTTCTTGCTTTGTTTCTACTC
*
98105119 TGTTGTCTTGCTTTGTTTC
1 TGTTTTCTTGCTTTGTTTC
98105138 CTTTTTTTGC
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
21 13 0.42
22 4 0.13
23 4 0.13
24 10 0.32
ACGTcount: A:0.02, C:0.19, G:0.16, T:0.64
Consensus pattern (24 bp):
TGTTTTCTTGCTTTGTTTCTACTC
Found at i:98105737 original size:13 final size:13
Alignment explanation
Indices: 98105698--98105737 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
98105688 TTTAAACCAA
*
98105698 ACTTTTCAAAAGA
1 ACTTTTCAAAAGC
* *
98105711 ACTTTTCCATAGC
1 ACTTTTCAAAAGC
98105724 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
98105737 A
1 A
98105738 TTGCCAAACT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.33
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:98114488 original size:31 final size:31
Alignment explanation
Indices: 98114431--98114492 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 31
98114421 TAATTAACTA
*
98114431 GACATTTTTTTCTTAATTCGGCACTTATATTT
1 GACAATTTTTTCTTAATTCGGCACTTA-ATTT
*
98114463 GACAATTTTTT-TTAAGTT-GGTACTTAATTT
1 GACAATTTTTTCTTAA-TTCGGCACTTAATTT
98114493 TTTTGGGTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 4 0.15
31 11 0.41
32 12 0.44
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.53
Consensus pattern (31 bp):
GACAATTTTTTCTTAATTCGGCACTTAATTT
Found at i:98130085 original size:15 final size:15
Alignment explanation
Indices: 98130065--98130095 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
98130055 CAGTGACAAG
98130065 ATGAATTGAAGGAAA
1 ATGAATTGAAGGAAA
98130080 ATGAATTGAAGGAAA
1 ATGAATTGAAGGAAA
98130095 A
1 A
98130096 GACCATGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.26, T:0.19
Consensus pattern (15 bp):
ATGAATTGAAGGAAA
Found at i:98130209 original size:15 final size:15
Alignment explanation
Indices: 98130189--98130218 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
98130179 TGATAGCTTC
98130189 GGCTACACTTATCTG
1 GGCTACACTTATCTG
98130204 GGCTACACTTATCTG
1 GGCTACACTTATCTG
98130219 ATCAAGGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (15 bp):
GGCTACACTTATCTG
Found at i:98130216 original size:65 final size:65
Alignment explanation
Indices: 98130139--98130268 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
98130129 TGATAGCTTC
98130139 GGCTACACTTATCTGATCAAGGAAAAGTGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTG
1 GGCTACACTTATCTGATCAAGGAAAAGTGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTG
*
98130204 GGCTACACTTATCTGATCAAGGAAAAGTGAAAGTGATAAGTGATAGCTTCGGCTACATTTATCTG
1 GGCTACACTTATCTGATCAAGGAAAAGTGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTG
98130269 ATCAATGACA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28
Consensus pattern (65 bp):
GGCTACACTTATCTGATCAAGGAAAAGTGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTG
Found at i:98130266 original size:50 final size:51
Alignment explanation
Indices: 98130204--98130303 Score: 141
Period size: 50 Copynumber: 2.0 Consensus size: 51
98130194 CACTTATCTG
*
98130204 GGCTACACTTATCTGATCAAGGA-AAAGTGA-AAGTGATAAGTGATAGCTTC
1 GGCTACACTTATCTGATCAAGGACAAA-TGACAAGTGAAAAGTGATAGCTTC
* * *
98130254 GGCTACATTTATCTGATCAATGACAAATGACAAGTGAAAAGTGGTAGCTT
1 GGCTACACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTGATAGCTT
98130304 TAGCTACCTG
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
50 24 0.55
51 20 0.45
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (51 bp):
GGCTACACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTGATAGCTTC
Found at i:98130310 original size:51 final size:50
Alignment explanation
Indices: 98130205--98130310 Score: 133
Period size: 51 Copynumber: 2.1 Consensus size: 50
98130195 ACTTATCTGG
* *
98130205 GCTACACTTATCTGATCAAGGAAAAGTGAAAGTGATAAGTGATAGCTTCG
1 GCTACACTTATCTGATCAAGGAAAAGTGAAAGTGAAAAGTGATAGCTTCA
* * * *
98130255 GCTACATTTATCTGATCAATGACAAA-TGACAAGTGAAAAGTGGTAGCTTTA
1 GCTACACTTATCTGATCAAGGA-AAAGTGA-AAGTGAAAAGTGATAGCTTCA
98130306 GCTAC
1 GCTAC
98130311 CTGATCAGTG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
50 23 0.48
51 25 0.52
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (50 bp):
GCTACACTTATCTGATCAAGGAAAAGTGAAAGTGAAAAGTGATAGCTTCA
Found at i:98130324 original size:31 final size:31
Alignment explanation
Indices: 98130286--98130465 Score: 263
Period size: 31 Copynumber: 5.8 Consensus size: 31
98130276 ACAAATGACA
**
98130286 AGTGAAAAGTGGTAGCTTTAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
98130317 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
98130348 AGTGAAAAGTGGTAG-TTCCGGCTAACTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
* *
98130379 AGTGAAAAGTGGTAGCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
98130410 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
98130441 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
98130466 AAGTGACAAG
Statistics
Matches: 135, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 2 0.01
31 132 0.98
32 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:98130642 original size:42 final size:42
Alignment explanation
Indices: 98130586--98130782 Score: 333
Period size: 42 Copynumber: 4.7 Consensus size: 42
98130576 TGTGATTCAC
98130586 GTAAGACCATAGCTGGGCTATGGCATCGATATATGAATATGT
1 GTAAGACCATAGCTGGGCTATGGCATCGATATATGAATATGT
98130628 GTAAGACCATAGCTGGGCTATGGCATCGATATATGAATATGT
1 GTAAGACCATAGCTGGGCTATGGCATCGATATATGAATATGT
98130670 GTAAGACCATAGCTGGGCTATGGCATCGATATATGAATATGT
1 GTAAGACCATAGCTGGGCTATGGCATCGATATATGAATATGT
* *
98130712 GTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAAATGT
1 GTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATATGT
* **
98130754 GTAAGACCATAGTTGAACTATGGCATCGA
1 GTAAGACCATAGCTGGGCTATGGCATCGA
98130783 GAAAATGAAG
Statistics
Matches: 148, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
41 1 0.01
42 146 0.99
43 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (42 bp):
GTAAGACCATAGCTGGGCTATGGCATCGATATATGAATATGT
Found at i:98133633 original size:16 final size:16
Alignment explanation
Indices: 98133608--98133647 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
98133598 GCTTATTTAA
*
98133608 TATTTCATTTATTCATT
1 TATTT-ATTTATACATT
*
98133625 TATTTATTTCTACATT
1 TATTTATTTATACATT
98133641 TATTTAT
1 TATTTAT
98133648 CTGCTTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTTATTTATACATT
Found at i:98133678 original size:3 final size:3
Alignment explanation
Indices: 98133666--98134074 Score: 132
Period size: 3 Copynumber: 137.7 Consensus size: 3
98133656 TACTTATATA
* *
98133666 TAT TATT TAT TAT TAC TAT TAT T-T TTT TCA- TAT TAT TAT T-T ATAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT -TAT
* * * * * *
98133711 TGT TTT TGT TAT TAT TAT TAT TAT TCCT GAT T-T TAT TAG TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * *
98133756 TAT TCT TCAT TTT TTT TATT TAT TAT TTT CTAT TAT TAT TTT TAT T-T
1 TAT TAT T-AT TAT TAT TA-T TAT TAT TAT -TAT TAT TAT TAT TAT TAT
* * * * * **
98133803 T-T TAC TAT TAT TATT TAT TAT CAA TAT TAT TAT CAT CAT TGC TAT
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * ** * *
98133848 TTT TTT TAT TAC TAT CAT TAT TAT TAT TAC TAT TAT CCT TAT TAA CA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
98133895 TAT TAT TAT TAT TAT TTT CTAC T-T TAT TAT TA- TAG TAT TAT TAC
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
98133939 TAT TAT TGT CAT CA- TAT TAT TA- AACT AAT TAAT T-T TA- TAT TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT T-AT TAT TAT TAT TAT
* * * * ** *
98133982 TAT TAT GA- CAT TAAA TAT T-T TCT T-T TCG TAT TTT TAT TAT TAT
1 TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
98134025 TAT TAT TAT CAT TAT CAT TAT TAT TATT TAT TA- CAT TTT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
98134070 TAT TA
1 TAT TA
98134075 CCCTTTTATT
Statistics
Matches: 296, Mismatches: 81, Indels: 58
0.68 0.19 0.13
Matches are distributed among these distances:
2 26 0.09
3 244 0.82
4 26 0.09
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:98133802 original size:19 final size:19
Alignment explanation
Indices: 98133771--98133835 Score: 67
Period size: 19 Copynumber: 3.2 Consensus size: 19
98133761 TTCATTTTTT
98133771 TTATTTATTATTTTCTATTA
1 TTATTT-TTATTTTCTATTA
* *
98133791 TTATTTTTATTTTTTACTA
1 TTATTTTTATTTTCTATTA
*
98133810 TTATTATTTATTATCAATATTA
1 TTATT-TTTATTTTC--TATTA
98133832 TTAT
1 TTAT
98133836 CATCATTGCT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 16 0.43
20 13 0.35
22 8 0.22
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTTTTATTTTCTATTA
Found at i:98133810 original size:22 final size:22
Alignment explanation
Indices: 98133673--98133823 Score: 96
Period size: 23 Copynumber: 6.7 Consensus size: 22
98133663 ATATATTATT
* * *
98133673 TATTATTACTATTATTTTTTTC
1 TATTATTATTTTTATTATTTTC
* *
98133695 ATATTATTATTTATATTGTTTT-
1 -TATTATTATTTTTATTATTTTC
* * *
98133717 TGTTATTATTATTATTA-TTCC
1 TATTATTATTTTTATTATTTTC
98133738 TGATT-TTATTAGTATTATTATTCTTC
1 T-ATTATTATT--T-TTATTATT-TTC
* *
98133764 -ATTTTTTTTATTTATTATTTTC
1 TATTATTATT-TTTATTATTTTC
98133786 TATTATTATTTTTATT-TTTTAC
1 TATTATTATTTTTATTATTTT-C
98133808 TATTATTATTTATTAT
1 TATTATTATTT-TTAT
98133824 CAATATTATT
Statistics
Matches: 101, Mismatches: 16, Indels: 22
0.73 0.12 0.16
Matches are distributed among these distances:
20 2 0.02
21 23 0.23
22 23 0.23
23 36 0.36
24 10 0.10
25 5 0.05
26 2 0.02
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (22 bp):
TATTATTATTTTTATTATTTTC
Found at i:98133922 original size:32 final size:32
Alignment explanation
Indices: 98133864--98133945 Score: 85
Period size: 32 Copynumber: 2.6 Consensus size: 32
98133854 TATTACTATC
*
98133864 ATTATTATTATTACTATTATCCTTATTAACAT
1 ATTATTATTATTATTATTATCCTTATTAACAT
* * **
98133896 ATTATTATTATTATT-TTCTACTTTATTATTAT
1 ATTATTATTATTATTATTAT-CCTTATTAACAT
* *
98133928 AGTATTATTACTATTATT
1 ATTATTATTATTATTATT
98133946 GTCATCATAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
31 3 0.07
32 36 0.88
33 2 0.05
ACGTcount: A:0.32, C:0.09, G:0.01, T:0.59
Consensus pattern (32 bp):
ATTATTATTATTATTATTATCCTTATTAACAT
Found at i:98134081 original size:18 final size:16
Alignment explanation
Indices: 98134015--98134089 Score: 57
Period size: 18 Copynumber: 4.5 Consensus size: 16
98134005 TTTCGTATTT
98134015 TTATTATT--ATTATTA
1 TTATTATTACATT-TTA
*
98134030 TTATCATTATCATTATTA
1 TTATTATTA-CATT-TTA
98134048 TTATTTATTACATTTTTA
1 TTA-TTATTACA-TTTTA
*
98134066 TTATTATTACCCTTTTA
1 TTATTATTA-CATTTTA
98134083 TT-TTATT
1 TTATTATT
98134090 TTATATTTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
15 7 0.14
16 5 0.10
17 13 0.25
18 19 0.37
19 7 0.14
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (16 bp):
TTATTATTACATTTTA
Found at i:98136153 original size:19 final size:20
Alignment explanation
Indices: 98136118--98136155 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
98136108 TTTTTGCACT
*
98136118 CATTTCATGCATCTGCATTG
1 CATTTCATGCATATGCATTG
98136138 CATTTCAT-CATATGCATT
1 CATTTCATGCATATGCATT
98136156 AAATGTCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.42
Consensus pattern (20 bp):
CATTTCATGCATATGCATTG
Found at i:98136321 original size:12 final size:12
Alignment explanation
Indices: 98136306--98136339 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
98136296 ATGCAGAAGG
98136306 AGATGCAAGAAC
1 AGATGCAAGAAC
*
98136318 AGATGCAAGCAC
1 AGATGCAAGAAC
*
98136330 AAATGCAAGA
1 AGATGCAAGA
98136340 GCAATTGGCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.50, C:0.18, G:0.24, T:0.09
Consensus pattern (12 bp):
AGATGCAAGAAC
Found at i:98139184 original size:51 final size:51
Alignment explanation
Indices: 98139102--98139221 Score: 177
Period size: 51 Copynumber: 2.4 Consensus size: 51
98139092 CTCAAACTTA
* *
98139102 CTTCATACTTCATCCGGAATTATTACCTTGTTGCTCTAACTTCAACAAGAG
1 CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
* * * *
98139153 CTTCATATTTCATCCGGAATAATTTCTTTGTTGCTCTAGCTTTAACAAGAG
1 CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
*
98139204 CTTCATATTTTATCCGGA
1 CTTCATATTTCATCCGGA
98139222 TAACTTAGTT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (51 bp):
CTTCATATTTCATCCGGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
Found at i:98144175 original size:12 final size:12
Alignment explanation
Indices: 98144158--98144182 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98144148 GTCATTCCAT
98144158 AAAAAAAGAAGA
1 AAAAAAAGAAGA
98144170 AAAAAAAGAAGA
1 AAAAAAAGAAGA
98144182 A
1 A
98144183 GAAGCAGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAAGA
Found at i:98144380 original size:69 final size:69
Alignment explanation
Indices: 98144293--98144433 Score: 255
Period size: 69 Copynumber: 2.0 Consensus size: 69
98144283 TCCATGTACT
* * *
98144293 ATGGATTTGACTTGAAGTTGACATATTCGACCCCTCTTTTTTTTGAATTTTCCACTTAAATACAC
1 ATGGAATTGACTTGAAGTTGACATACTCGACCCCTCTTTTTGTTGAATTTTCCACTTAAATACAC
98144358 TAAC
66 TAAC
98144362 ATGGAATTGACTTGAAGTTGACATACTCGACCCCTCTTTTTGTTGAATTTTCCACTTAAATACAC
1 ATGGAATTGACTTGAAGTTGACATACTCGACCCCTCTTTTTGTTGAATTTTCCACTTAAATACAC
98144427 TAAC
66 TAAC
98144431 ATG
1 ATG
98144434 TTTCAAATCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (69 bp):
ATGGAATTGACTTGAAGTTGACATACTCGACCCCTCTTTTTGTTGAATTTTCCACTTAAATACAC
TAAC
Found at i:98147338 original size:21 final size:21
Alignment explanation
Indices: 98147312--98147352 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
98147302 AGACGAGCAA
* *
98147312 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
98147333 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
98147353 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:98156231 original size:31 final size:31
Alignment explanation
Indices: 98156195--98156298 Score: 131
Period size: 31 Copynumber: 3.4 Consensus size: 31
98156185 AATCACATTC
*
98156195 ATATTAAATTAATAAAATATTATCTAGATAA
1 ATATTAAATTAATAAAATATTATCTAAATAA
** * * *
98156226 ATATTAAATT-A-AATTTAATATCTCATATTA
1 ATATTAAATTAATAAAATATTATCT-AAATAA
98156256 ATATTAAATTAATAAAATATTATCTAAATAA
1 ATATTAAATTAATAAAATATTATCTAAATAA
98156287 ATATTAAATTAA
1 ATATTAAATTAA
98156299 ATTAAATTTA
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
29 9 0.15
30 15 0.25
31 27 0.45
32 9 0.15
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (31 bp):
ATATTAAATTAATAAAATATTATCTAAATAA
Found at i:98156267 original size:61 final size:65
Alignment explanation
Indices: 98156195--98156325 Score: 216
Period size: 66 Copynumber: 2.1 Consensus size: 65
98156185 AATCACATTC
*
98156195 ATATTAAATTAATAAAATATTATCTAGAT-AA-A-T-ATTAAATTAAATTTAATATCTCATATTA
1 ATATTAAATTAATAAAATATTATCTAAATAAATATTAATTAAATTAAATTTAATATCTCATATTA
98156256 ATATTAAATTAATAAAATATTATCTAAATAAATATTAAATTAAATTAAATTTAATATCTCATATT
1 ATATTAAATTAATAAAATATTATCTAAATAAATATT-AATTAAATTAAATTTAATATCTCATATT
98156321 A
65 A
98156322 ATAT
1 ATAT
98156326 ATAGAAAAAT
Statistics
Matches: 64, Mismatches: 1, Indels: 5
0.91 0.01 0.07
Matches are distributed among these distances:
61 28 0.44
62 2 0.03
63 1 0.02
64 1 0.02
66 32 0.50
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.43
Consensus pattern (65 bp):
ATATTAAATTAATAAAATATTATCTAAATAAATATTAATTAAATTAAATTTAATATCTCATATTA
Found at i:98156299 original size:16 final size:16
Alignment explanation
Indices: 98156255--98156359 Score: 64
Period size: 16 Copynumber: 6.7 Consensus size: 16
98156245 ATCTCATATT
98156255 AATATTAAATT-AATAA
1 AATATTAAATTAAAT-A
98156271 AATATT--ATCTAAATA
1 AATATTAAAT-TAAATA
98156286 AATATTAAATTAAATTA
1 AATATTAAATTAAA-TA
**
98156303 AAT-TT-AA-TATCT-
1 AATATTAAATTAAATA
*
98156315 CATATTAATATATAGAA-A
1 AATATTAA-AT-TA-AATA
*
98156333 AATATTAAATTAAATG
1 AATATTAAATTAAATA
98156349 AATATTAAATT
1 AATATTAAATT
98156360 CATAAAAATA
Statistics
Matches: 69, Mismatches: 7, Indels: 26
0.68 0.07 0.25
Matches are distributed among these distances:
12 2 0.03
13 3 0.04
14 5 0.07
15 13 0.19
16 28 0.41
17 11 0.16
18 7 0.10
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (16 bp):
AATATTAAATTAAATA
Found at i:98156610 original size:138 final size:138
Alignment explanation
Indices: 98156362--98156638 Score: 554
Period size: 138 Copynumber: 2.0 Consensus size: 138
98156352 ATTAAATTCA
98156362 TAAAAATAATATTTTCTTTAGAAAAGTTAATTTGAAATCAAGTTACTTATAGAATCCCACTAGGA
1 TAAAAATAATATTTTCTTTAGAAAAGTTAATTTGAAATCAAGTTACTTATAGAATCCCACTAGGA
98156427 GTCTAATTTTTCCACTGCTCTACCATCGAAGAATCACAACCACCGTGCCCAATGGTGCCATTGTT
66 GTCTAATTTTTCCACTGCTCTACCATCGAAGAATCACAACCACCGTGCCCAATGGTGCCATTGTT
98156492 GGCGCCAC
131 GGCGCCAC
98156500 TAAAAATAATATTTTCTTTAGAAAAGTTAATTTGAAATCAAGTTACTTATAGAATCCCACTAGGA
1 TAAAAATAATATTTTCTTTAGAAAAGTTAATTTGAAATCAAGTTACTTATAGAATCCCACTAGGA
98156565 GTCTAATTTTTCCACTGCTCTACCATCGAAGAATCACAACCACCGTGCCCAATGGTGCCATTGTT
66 GTCTAATTTTTCCACTGCTCTACCATCGAAGAATCACAACCACCGTGCCCAATGGTGCCATTGTT
98156630 GGCGCCAC
131 GGCGCCAC
98156638 T
1 T
98156639 TCTCCTCGAC
Statistics
Matches: 139, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
138 139 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.31
Consensus pattern (138 bp):
TAAAAATAATATTTTCTTTAGAAAAGTTAATTTGAAATCAAGTTACTTATAGAATCCCACTAGGA
GTCTAATTTTTCCACTGCTCTACCATCGAAGAATCACAACCACCGTGCCCAATGGTGCCATTGTT
GGCGCCAC
Found at i:98159623 original size:9 final size:9
Alignment explanation
Indices: 98159609--98159636 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
98159599 TCTTTATTTC
98159609 TTTATTTTA
1 TTTATTTTA
98159618 TTTATTTTA
1 TTTATTTTA
98159627 TTTATTTTA
1 TTTATTTTA
98159636 T
1 T
98159637 GTTTTAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTATTTTA
Found at i:98161388 original size:25 final size:25
Alignment explanation
Indices: 98161360--98161442 Score: 80
Period size: 25 Copynumber: 3.3 Consensus size: 25
98161350 CTAAGCATCA
* *
98161360 GTGGTGAATATTTTGTAAAGCATTT
1 GTGGCGAATATTCTGTAAAGCATTT
* *
98161385 GTGGCGAACT-TTCTATAAAGCTTTT
1 GTGGCGAA-TATTCTGTAAAGCATTT
*
98161410 ATGGCGAATATTCTGTAAAGTCA-TT
1 GTGGCGAATATTCTGTAAAG-CATTT
*
98161435 ATGGCGAA
1 GTGGCGAA
98161443 CTCTCTGTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
24 1 0.02
25 45 0.94
26 2 0.04
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (25 bp):
GTGGCGAATATTCTGTAAAGCATTT
Found at i:98161449 original size:25 final size:24
Alignment explanation
Indices: 98161373--98161453 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 24
98161363 GTGAATATTT
*
98161373 TGTAAAGCATTTGTGGCGAACTTTC
1 TGTAAAGCA-TTATGGCGAACTTTC
* *
98161398 TATAAAGCTTTTATGGCGAA-TATTC
1 TGTAAAGC-ATTATGGCGAACT-TTC
*
98161423 TGTAAAGTCATTATGGCGAACTCTC
1 TGTAAAG-CATTATGGCGAACTTTC
98161448 TGTAAA
1 TGTAAA
98161454 ACCTTCTTGG
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
24 1 0.02
25 43 0.93
26 2 0.04
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.36
Consensus pattern (24 bp):
TGTAAAGCATTATGGCGAACTTTC
Found at i:98161465 original size:50 final size:50
Alignment explanation
Indices: 98161365--98161465 Score: 116
Period size: 50 Copynumber: 2.0 Consensus size: 50
98161355 CATCAGTGGT
* * * * *
98161365 GAATATTTTGTAAAGCATTTGTGGCGAACTTTCTATAAAGCTTTTATGGC
1 GAATATTCTGTAAAGCATTTATGGCGAACTCTCTATAAACCTTCTATGGC
*
98161415 GAATATTCTGTAAAGTCA-TTATGGCGAACTCTCTGTAAAACCTTCT-TGGC
1 GAATATTCTGTAAAG-CATTTATGGCGAACTCTCTAT-AAACCTTCTATGGC
98161465 G
1 G
98161466 TATTATTTAG
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
50 34 0.79
51 9 0.21
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.37
Consensus pattern (50 bp):
GAATATTCTGTAAAGCATTTATGGCGAACTCTCTATAAACCTTCTATGGC
Found at i:98162742 original size:16 final size:16
Alignment explanation
Indices: 98162693--98162743 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
98162683 TAAATTATAT
98162693 ATAGATTTAAAAGAAA
1 ATAGATTTAAAAGAAA
* * * *
98162709 ACAAATATAAACA-TAA
1 ATAGATTTAAA-AGAAA
98162725 ATAGATTTAAAAGAAA
1 ATAGATTTAAAAGAAA
98162741 ATA
1 ATA
98162744 TATACATAAA
Statistics
Matches: 25, Mismatches: 8, Indels: 4
0.68 0.22 0.11
Matches are distributed among these distances:
15 1 0.04
16 23 0.92
17 1 0.04
ACGTcount: A:0.65, C:0.04, G:0.08, T:0.24
Consensus pattern (16 bp):
ATAGATTTAAAAGAAA
Found at i:98162742 original size:28 final size:30
Alignment explanation
Indices: 98162693--98162753 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 30
98162683 TAAATTATAT
98162693 ATAGATTTAAAAGAAAACAAATATAAACATAA
1 ATAGATTTAAAAG--AACAAATATAAACATAA
*
98162725 ATAGATTTAAAAG-A-AAATATATACATAA
1 ATAGATTTAAAAGAACAAATATAAACATAA
98162753 A
1 A
98162754 ATAATACAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 14 0.50
29 1 0.04
32 13 0.46
ACGTcount: A:0.64, C:0.05, G:0.07, T:0.25
Consensus pattern (30 bp):
ATAGATTTAAAAGAACAAATATAAACATAA
Found at i:98162764 original size:28 final size:28
Alignment explanation
Indices: 98162711--98162764 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
98162701 AAAAGAAAAC
**
98162711 AAATATAAACATAAATAGATTTAAAAGA
1 AAATATAAACATAAATAGATACAAAAGA
*
98162739 AAATATATACATAAAATA-ATACAAAA
1 AAATATAAACAT-AAATAGATACAAAA
98162765 ACAACAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 17 0.77
29 5 0.23
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.24
Consensus pattern (28 bp):
AAATATAAACATAAATAGATACAAAAGA
Found at i:98164399 original size:20 final size:20
Alignment explanation
Indices: 98164351--98164399 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
98164341 CTGTAAACAA
*
98164351 TTTTAATTTTTATTTCTGGT
1 TTTTAATTTATATTTCTGGT
*
98164371 TTATAATTTATATTT-TGGT
1 TTTTAATTTATATTTCTGGT
98164390 TTTTATATTT
1 TTTTA-ATTT
98164400 GGTTTATTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.20, C:0.02, G:0.08, T:0.69
Consensus pattern (20 bp):
TTTTAATTTATATTTCTGGT
Found at i:98164953 original size:133 final size:134
Alignment explanation
Indices: 98164787--98165034 Score: 322
Period size: 133 Copynumber: 1.9 Consensus size: 134
98164777 CTTCAATCTA
* * * ** * * *
98164787 CTCCCCTGCTACCTCGAGAAGATAAGACTCACCGTTTTCGATCTGCC-CTGTTGCTAACTCGAGG
1 CTCCCCTGATACCTCGAGAAGATAAGACTCACCGCTTTCGATCTACCTC-ACTACTAACTCAAAG
98164851 AGACAAAATC-AGC-ATCATCAATCTGCTCCCTTGCTACCTCAGGAAGATAAAGCTAGGGGCTAA
65 AGACAAAATCTA-CAATCATCAATCTGCTCCCTTGCTACCTCAGGAAGATAAAGCTAGGGGCTAA
98164914 AATATG
129 AATATG
* * *
98164920 CTCCCCTGATACCTCGGGAAGATAAGATTCACCGCTTTCGATCTACCTCACTACTATCTCAAAGA
1 CTCCCCTGATACCTCGAGAAGATAAGACTCACCGCTTTCGATCTACCTCACTACTAACTCAAAGA
* * * *
98164985 GACAAGATCTACAATCTTCAGTCTGTTCCCTTGCTACCTCAGGAAGATAA
66 GACAAAATCTACAATCATCAATCTGCTCCCTTGCTACCTCAGGAAGATAA
98165035 GATTACAATC
Statistics
Matches: 97, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
133 61 0.63
134 36 0.37
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (134 bp):
CTCCCCTGATACCTCGAGAAGATAAGACTCACCGCTTTCGATCTACCTCACTACTAACTCAAAGA
GACAAAATCTACAATCATCAATCTGCTCCCTTGCTACCTCAGGAAGATAAAGCTAGGGGCTAAAA
TATG
Found at i:98165047 original size:44 final size:44
Alignment explanation
Indices: 98164988--98165414 Score: 215
Period size: 44 Copynumber: 9.6 Consensus size: 44
98164978 TCAAAGAGAC
*
98164988 AAGATCTACAATCTTCAGTCTGTTCCCTTGCTACCTCAGGAAGAT
1 AAGAT-TACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGAT
**
98165033 AAGATTACAATCTTCAACCTGCTCCCTTGCTACCTCAAGG-AGAT
1 AAGATTACAATCTTCAGTCTGCTCCCTTGCTACCTC-AGGAAGAT
** **** ** * * * *
98165077 AAGGCTAGTGGCTAAAATCTACTCCCCTGCTACCTCGGGAAGAT
1 AAGATTACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGAT
* * ** * * * *
98165121 AAAATTTGCCGTCTTC-GATCTGCTCCAC-TACTATCTTGAGG-AGAC
1 AAGA-TTACAATCTTCAG-TCTGCTCC-CTTGCTA-CCTCAGGAAGAT
* * *
98165166 AAAATCTACAATCTTTAGTCTGCTCCCTTGATACCTCAGGAAGAT
1 AAGAT-TACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGAT
* * *
98165211 AAGACTACAATCTTCAGCCTGCTCCCTTGCTACCTCAGAAAGAT
1 AAGATTACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGAT
** ***** ** * *
98165255 AAGGCTGGTGGCTAAAAATCTGCTCCC-TGCTGCCTCCA-GAAGAT
1 AAGATTACAATCT-TCAGTCTGCTCCCTTGCTACCT-CAGGAAGAT
* * * * * *
98165299 AAGATTCGCTATCCTC-GATCTGC-CCATTGCTATCTCGAGG-AGAC
1 AAGATT-ACAATCTTCAG-TCTGCTCCCTTGCTACCTC-AGGAAGAT
* *
98165343 AAAATCTACAATCTTCAGTCTGCTCCATTGCTACCTCAGGAAGAT
1 AAGAT-TACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGAT
* * *
98165388 AAAACTACAATCTTCAGCCTGCTCCCT
1 AAGATTACAATCTTCAGTCTGCTCCCT
98165415 CAGAGAGATA
Statistics
Matches: 281, Mismatches: 80, Indels: 43
0.70 0.20 0.11
Matches are distributed among these distances:
43 5 0.02
44 181 0.64
45 89 0.32
46 6 0.02
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (44 bp):
AAGATTACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGAT
Found at i:98165175 original size:178 final size:176
Alignment explanation
Indices: 98164868--98165519 Score: 750
Period size: 178 Copynumber: 3.7 Consensus size: 176
98164858 ATCAGCATCA
* * * * *
98164868 TCAATCTGCTCCCTTGCTACCTCAGGAAGATAAAGCTAGGGGCTAAAATATGCTCCCCTGATACC
1 TCAACCTGCTCCCTTGCTACCTCAGG-AGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACC
* * * * * *
98164933 TCGGGAAGATAAGATTCACCG-CTTTCGATCTACCTCACTACTATCTCAAAGAGACAAGATCTAC
65 TCGAGAAGATAAGATTCGCCGTC-TTCGATCTGCC-CACTACTATCTCGAGGAGACAAAATCTAC
* *
98164997 AATCTTCAGTCTGTTCCCTTGCTACCTCAGGAAGATAAGATTACAATCT
128 AATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCT
*
98165046 TCAACCTGCTCCCTTGCTACCTCAAGGAGATAAGGCTAGTGGCTAAAATCTACTCCCCTGCTACC
1 TCAACCTGCTCCCTTGCTACCTC-AGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACC
* * * *
98165111 TCGGGAAGATAAAATTTGCCGTCTTCGATCTGCTCCACTACTATCTTGAGGAGACAAAATCTACA
65 TCGAGAAGATAAGATTCGCCGTCTTCGATCTGC-CCACTACTATCTCGAGGAGACAAAATCTACA
* *
98165176 ATCTTTAGTCTGCTCCCTTGATACCTCAGGAAGATAAGACTACAATCT
129 ATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCT
* * * *
98165224 TCAGCCTGCTCCCTTGCTACCTCAGAAAGATAAGGCTGGTGGCTAAAAATCTGCT-CCCTGCTGC
1 TCAACCTGCTCCCTTGCTACCTCAG-GAGATAAGGCTAGTGGCT-AAAATCTGCTCCCCTGCTAC
* ** * * *
98165288 CTCCAGAAGATAAGATTCGCTATCCTCGATCTGCCCATTGCTATCTCGAGGAGACAAAATCTACA
64 CTCGAGAAGATAAGATTCGCCGTCTTCGATCTGCCCACTACTATCTCGAGGAGACAAAATCTACA
* *
98165353 ATCTTCAGTCTGCTCCATTGCTACCTCAGGAAGATAAAACTACAATCT
129 ATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCT
* * * ** * *
98165401 TCAGCCTGCTCCC-T-C-A---GA-GAGATAAGGCTGGTGGCTAAAATCTGCTCTTCTACTAACT
1 TCAACCTGCTCCCTTGCTACCTCAGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCT
* * * *
98165459 CGAGAAGATAAGATTTGTCGTCTTTGATCTGCTCCA-TCACTATTTC-AGGGAGACAAAATCT
66 CGAGAAGATAAGATTCGCCGTCTTCGATCTGC-CCACT-ACTATCTCGA-GGAGACAAAATCT
98165520 GAAATCACTG
Statistics
Matches: 412, Mismatches: 53, Indels: 26
0.84 0.11 0.05
Matches are distributed among these distances:
168 10 0.02
169 50 0.12
170 22 0.05
171 1 0.00
174 1 0.00
175 1 0.00
176 1 0.00
177 87 0.21
178 225 0.55
179 14 0.03
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (176 bp):
TCAACCTGCTCCCTTGCTACCTCAGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTGCTACCT
CGAGAAGATAAGATTCGCCGTCTTCGATCTGCCCACTACTATCTCGAGGAGACAAAATCTACAAT
CTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCT
Found at i:98166437 original size:16 final size:16
Alignment explanation
Indices: 98166416--98166449 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
98166406 AATTGATTGG
98166416 GAAAAAATATTTCAAA
1 GAAAAAATATTTCAAA
98166432 GAAAAAATATTTCAAA
1 GAAAAAATATTTCAAA
98166448 GA
1 GA
98166450 TAGCCAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.62, C:0.06, G:0.09, T:0.24
Consensus pattern (16 bp):
GAAAAAATATTTCAAA
Found at i:98172463 original size:55 final size:55
Alignment explanation
Indices: 98172347--98172450 Score: 154
Period size: 55 Copynumber: 1.9 Consensus size: 55
98172337 TGCAATATGG
* * *
98172347 CCGTGGTCGAGCCAGCCAAAACAACACGGGCGTGCAACATGCCCATGTGGAAGAA
1 CCGTGGTCGAACCAGCCAAAACAACACGAGCGTGCAACACGCCCATGTGGAAGAA
* * *
98172402 CCGTGGTCGAACCTGCCAAAACAACACGAGCGTTCGACACGCCCATGTG
1 CCGTGGTCGAACCAGCCAAAACAACACGAGCGTGCAACACGCCCATGTG
98172451 AAACACTCGT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 43 1.00
ACGTcount: A:0.29, C:0.32, G:0.27, T:0.12
Consensus pattern (55 bp):
CCGTGGTCGAACCAGCCAAAACAACACGAGCGTGCAACACGCCCATGTGGAAGAA
Found at i:98174008 original size:12 final size:13
Alignment explanation
Indices: 98173980--98174017 Score: 69
Period size: 12 Copynumber: 3.0 Consensus size: 13
98173970 TGAAACTACT
98173980 TTTTATTTTTTAG
1 TTTTATTTTTTAG
98173993 TTTTATTTTTTA-
1 TTTTATTTTTTAG
98174005 TTTTATTTTTTAG
1 TTTTATTTTTTAG
98174018 CAAATTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 12 0.50
13 12 0.50
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (13 bp):
TTTTATTTTTTAG
Found at i:98181106 original size:51 final size:49
Alignment explanation
Indices: 98180981--98181168 Score: 250
Period size: 49 Copynumber: 3.8 Consensus size: 49
98180971 TGAGGTCATG
* *
98180981 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTATTGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCACA
* * *
98181030 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT-GGTCACA
* * * *
98181081 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCACA
* * *
98181130 TGTGTAATACTAACTACAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
98181169 GCTTTGGCTA
Statistics
Matches: 120, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 74 0.62
50 4 0.03
51 42 0.35
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCACA
Found at i:98181153 original size:100 final size:100
Alignment explanation
Indices: 98180980--98181168 Score: 306
Period size: 100 Copynumber: 1.9 Consensus size: 100
98180970 GTGAGGTCAT
* * * *
98180980 GTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTATTGGTCACATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAATACTAACT
* *
98181045 GCAGGCTACTATGCGTACCCGATAACTTCGATCAC
66 ACAGGCTACTATGCGTACCAGATAACTTCGATCAC
* *
98181080 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAATACTAACT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAATACTAACT
98181145 ACAGGCTACTATGCGTACCAGATA
66 ACAGGCTACTATGCGTACCAGATA
98181169 GCTTTGGCTA
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAATACTAACT
ACAGGCTACTATGCGTACCAGATAACTTCGATCAC
Done.