Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 302 of 325
Found at i:98186278 original size:28 final size:28
Alignment explanation
Indices: 98186246--98186329 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
98186236 AACTTCGATC
98186246 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
98186274 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
98186296 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
98186324 ACGTGT
1 ACGTGT
98186330 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:98186307 original size:50 final size:49
Alignment explanation
Indices: 98186142--98186373 Score: 266
Period size: 49 Copynumber: 4.7 Consensus size: 49
98186132 TCTATTGTGA
* * *
98186142 GGTCACATGTGTAGTACTAAATGCAAGCTACTACGTGTACCGGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * * *
98186191 GGTCGCATGTGTAATACTAAGTGCAGGCAACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * **
98186241 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
98186291 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
98186341 GGTCGCATGTGTAGTGCTAAGTACAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
98186374 TGCATACCAG
Statistics
Matches: 151, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
49 67 0.44
50 48 0.32
51 36 0.24
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:98186416 original size:150 final size:150
Alignment explanation
Indices: 98186141--98186419 Score: 362
Period size: 150 Copynumber: 1.9 Consensus size: 150
98186131 ATCTATTGTG
*
98186141 AGGTCACATGTGTAGTACTAAATGCAAGCTACTACGTGTACCGGATTATTGGTCGCATGTGTAAT
1 AGGTCACATGTGTAGTACTAAATGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAAT
* * * ** ** *
98186206 ACTAAGTGCAGGCAACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTACAGGCAACTATGCATACCAGATAACTTCGATCACAAGTGTAAAAATAAGTGCAGGCT
98186271 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
* * * *
98186291 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACATGTGTAGTACTAAATGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAAT
* * * * * * *
98186356 GCTAAGTACAGGCTACTATGCATACCAGATAGCTTTG-GCTATAAGTGTAAAAATATGTGCAGGC
66 ACTAAGTACAGGCAACTATGCATACCAGATAACTTCGATC-ACAAGTGTAAAAATAAGTGCAGGC
98186420 AACTGAGTAT
Statistics
Matches: 108, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
149 1 0.01
150 107 0.99
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (150 bp):
AGGTCACATGTGTAGTACTAAATGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAAT
ACTAAGTACAGGCAACTATGCATACCAGATAACTTCGATCACAAGTGTAAAAATAAGTGCAGGCT
ACTACGTGTATCAGATGGTT
Found at i:98187860 original size:18 final size:18
Alignment explanation
Indices: 98187837--98187872 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
98187827 GTAGATATTT
98187837 TTGATGATTCATCCATGG
1 TTGATGATTCATCCATGG
*
98187855 TTGATGATTCATCTATGG
1 TTGATGATTCATCCATGG
98187873 AAAATGAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.14, G:0.22, T:0.42
Consensus pattern (18 bp):
TTGATGATTCATCCATGG
Found at i:98188957 original size:25 final size:24
Alignment explanation
Indices: 98188915--98188972 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
98188905 CACAAACACA
*
98188915 GCTCTTTATGACCATCCTGATATAG
1 GCTCTTTATGAACATCCTGATAT-G
* *
98188940 GCTCTTTTTGAACTTCCTGATATG
1 GCTCTTTATGAACATCCTGATATG
98188964 GCTCGTTTA
1 GCTC-TTTA
98188973 AACTTTCTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 5 0.18
25 23 0.82
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.41
Consensus pattern (24 bp):
GCTCTTTATGAACATCCTGATATG
Found at i:98198650 original size:3 final size:3
Alignment explanation
Indices: 98198644--98198695 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
98198634 TTTCGTGTCT
98198644 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
98198692 TTA T
1 TTA T
98198696 GTCATTTTAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:98201737 original size:13 final size:14
Alignment explanation
Indices: 98201719--98201747 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
98201709 AAATAGATCA
98201719 TAATTTTT-AAATT
1 TAATTTTTAAAATT
98201732 TAATTTTTAAAATT
1 TAATTTTTAAAATT
98201746 TA
1 TA
98201748 CAAATACTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TAATTTTTAAAATT
Found at i:98206344 original size:20 final size:23
Alignment explanation
Indices: 98206299--98206341 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
98206289 AAATTAAAAG
98206299 AAATATATAATAATAAGTATTTTA
1 AAATATATAATAATAAG-ATTTTA
98206323 AAAT-TATAATAATAA-ATTT
1 AAATATATAATAATAAGATTT
98206342 AAATTTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.21
23 11 0.58
24 4 0.21
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (23 bp):
AAATATATAATAATAAGATTTTA
Found at i:98206383 original size:25 final size:24
Alignment explanation
Indices: 98206355--98206401 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
98206345 TTTTATATTA
98206355 ATATTAATATTAAATAAATATAATT
1 ATATTAATATTAAATAAA-ATAATT
*
98206380 ATATTAATATTTAATAAAATAA
1 ATATTAATATTAAATAAAATAA
98206402 AAATCTCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
ATATTAATATTAAATAAAATAATT
Found at i:98208889 original size:21 final size:20
Alignment explanation
Indices: 98208838--98208889 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
98208828 TGTAGTTATA
98208838 AAAAAAGAAAAAGCTTAATT
1 AAAAAAGAAAAAGCTTAATT
* *
98208858 ATAATAGAAAATAGCTTAATT
1 AAAAAAGAAAA-AGCTTAATT
*
98208879 AAAAAATAAAA
1 AAAAAAGAAAA
98208890 GAAAAATGCA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.65, C:0.04, G:0.08, T:0.23
Consensus pattern (20 bp):
AAAAAAGAAAAAGCTTAATT
Found at i:98217989 original size:15 final size:15
Alignment explanation
Indices: 98217969--98218020 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
98217959 ATTCAATATT
98217969 AATATTTTAATAATA
1 AATATTTTAATAATA
*
98217984 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
98218003 AATATATTAATAATA
1 AATATTTTAATAATA
98218018 AAT
1 AAT
98218021 GTTTGGTAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 13 0.43
16 2 0.07
17 4 0.13
18 1 0.03
19 10 0.33
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:98223175 original size:134 final size:131
Alignment explanation
Indices: 98222870--98223318 Score: 377
Period size: 134 Copynumber: 3.4 Consensus size: 131
98222860 TTCCGAAGAG
* * * * * * * *
98222870 ATATTCGATTATTTTGAACAAAAGGGAGATTGCAACCCAGCACGATAAGGCATTATTCCCTGAAT
1 ATATTCGATTGTTTTGAACAAATGAGAAATCGCAACCCAGCACGATAGGGCATAATT-CTTGAAT
** * * ** *
98222935 TGCCAAACACTGAACATTTCTTTCGTTTTAAAGAGTTTTTAGAAAACGTGAGTGAAATTCTGAAG
65 TGCCAAACACTGAACATGCCTTTCGTTTTAAAGAGTTTTTAAAAAACATGAGTGAAAACCTAAAG
*
98223000 GG
130 GA
* * * * *
98223002 ATCTTCGATCGTTTCGAACAAATGA-AAGAGCGCAACCCAGCACGATAGGGCACAATTCTTGAAT
1 ATATTCGATTGTTTTGAACAAATGAGAA-ATCGCAACCCAGCACGATAGGGCATAATTCTTGAAT
*
98223066 TGCCAAACA-TCGAACATCGCCTTT-GTTTTAAAGGGTTTTCTTAAAAAAACATGAGTGAAAACC
65 TGCCAAACACT-GAACAT-GCCTTTCGTTTTAAAGAG-TTT-TT-AAAAAACATGAGTGAAAACC
98223129 TAAAGGA
125 TAAAGGA
* * * *
98223136 ATATTCGATTGTTTTGAACAAATGAGAAATCACAGCCCAGCACGATAGGGCATGATTCTCGAATT
1 ATATTCGATTGTTTTGAACAAATGAGAAATCGCAACCCAGCACGATAGGGCATAATTCTTGAATT
* * * * * * * *** *
98223201 GTCAAACACCGAGTCTTGCC-TTCGTTTTAAAG-GATTTTTAGAAGACCTGAGTGAAATTTTGAA
66 GCCAAACACTGA-ACATGCCTTTCGTTTTAAAGAG-TTTTTAAAAAACATGAGTGAAAACCTAAA
*
98223264 GGG
129 GGA
** * * * * *
98223267 ATATTTAATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCA
1 ATATTCGATTGTTTTGAACAAATGAGAAATCGCAACCCAGCACGATAGGGCA
98223319 CGATTCCGCG
Statistics
Matches: 254, Mismatches: 53, Indels: 21
0.77 0.16 0.06
Matches are distributed among these distances:
130 1 0.00
131 94 0.37
132 52 0.20
133 8 0.03
134 95 0.37
135 4 0.02
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (131 bp):
ATATTCGATTGTTTTGAACAAATGAGAAATCGCAACCCAGCACGATAGGGCATAATTCTTGAATT
GCCAAACACTGAACATGCCTTTCGTTTTAAAGAGTTTTTAAAAAACATGAGTGAAAACCTAAAGG
A
Found at i:98223324 original size:131 final size:131
Alignment explanation
Indices: 98222841--98223372 Score: 469
Period size: 132 Copynumber: 4.0 Consensus size: 131
98222831 TTGCCTCACC
* * * * * * * *
98222841 TTAGAAAATACGAGTGAAATTCCGAAGAGATATTCGATTATTTTGAACAAAAGGGAGATTGCAAC
1 TTAGAAAACATGAGTGAAATTCTGAAGGGATATTCGATTATTTTGAACAAATGAGAAATCGCAAC
* ** * * ** *
98222906 CCAGCACGATAAGGCATTATTCCCTGAATTGCCAAACACTGAACATTTCTTTCGTTTTAAA-GAG
66 CCAGCACGATAGGGCACGATTCTC-GAATTGCCAAACACCGAACATCGCCTTCGTTTTAAAGGA-
98222970 TTT
129 TTT
* * ** * *
98222973 TTAGAAAACGTGAGTGAAATTCTGAAGGGATCTTCGATCGTTTCGAACAAATGA-AAGAGCGCAA
1 TTAGAAAACATGAGTGAAATTCTGAAGGGATATTCGATTATTTTGAACAAATGAGAA-ATCGCAA
* * * * *
98223037 CCCAGCACGATAGGGCACAATTCTTGAATTGCCAAACATCGAACATCGCCTTTGTTTTAAAGGGT
65 CCCAGCACGATAGGGCACGATTCTCGAATTGCCAAACACCGAACATCGCCTTCGTTTTAAA-GGA
98223102 TTT
129 TTT
* ** * * * *
98223105 CTTAAAAAAACATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAACAAATGAGAAATCACA
1 -TT-AGAAAACATGAGTGAAATTCTGAAGGGATATTCGATTATTTTGAACAAATGAGAAATCGCA
* * * * *
98223170 GCCCAGCACGATAGGGCATGATTCTCGAATTGTCAAACACCGAGTC-TTGCCTTCGTTTTAAAGG
64 ACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAACACCGA-ACATCGCCTTCGTTTTAAAGG
98223234 ATTT
128 ATTT
* * * ** * * *
98223238 TTAGAAGACCTGAGTGAAATTTTGAAGGGATATTTAATTATTTTGAGCAAACGAGAAATTGCAAC
1 TTAGAAAACATGAGTGAAATTCTGAAGGGATATTCGATTATTTTGAACAAATGAGAAATCGCAAC
* * * * * * *
98223303 CCAGCACGTTAGGGCACGATTCCGCGAATTACCAAATATCAAATC-TCGCCTTCGTTTTAAAGAA
66 CCAGCACGATAGGGCACGATT-CTCGAATTGCCAAACACCGAA-CATCGCCTTCGTTTTAAAGGA
98223367 TTT
129 TTT
98223370 TTA
1 TTA
98223373 AATGAATAAT
Statistics
Matches: 317, Mismatches: 74, Indels: 18
0.78 0.18 0.04
Matches are distributed among these distances:
131 97 0.31
132 111 0.35
133 8 0.03
134 98 0.31
135 3 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (131 bp):
TTAGAAAACATGAGTGAAATTCTGAAGGGATATTCGATTATTTTGAACAAATGAGAAATCGCAAC
CCAGCACGATAGGGCACGATTCTCGAATTGCCAAACACCGAACATCGCCTTCGTTTTAAAGGATT
T
Found at i:98226401 original size:78 final size:78
Alignment explanation
Indices: 98226311--98226569 Score: 204
Period size: 89 Copynumber: 3.2 Consensus size: 78
98226301 GCCTTCTTTG
98226311 ATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTACTCCGCTACAACTTTAGGGAGATAG
1 ATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTACTCCGCTACAACTTTAGGGAGATAG
98226376 GACGGTGGCTTAA
66 GACGGTGGCTTAA
* * * ** *
98226389 ATCTGCTTCACTGCAACTTCAGGAAGAC-AGGATTTTGCAATCTTCGGCCTGTTGCC-CTACTAC
1 ATCTGC-T--C--C-AC-T--GG-AGACGA-GA-TCTGCGATCTTCAGCCTACT-CCGCTACAAC
* * * * *
98226452 -TTAGGGGGTTAAGG-C-TTGCCTTCTTTA
53 TTTAGGGAGAT-AGGACGGTG---GCTTAA
* *
98226479 ATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTACTCCGCTATAACTTTAGGGAAATAG
1 ATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTACTCCGCTACAACTTTAGGGAGATAG
98226544 GACGGTGGCTTAA
66 GACGGTGGCTTAA
*
98226557 ATCTGCTTCACTG
1 ATCTGCTCCACTG
98226570 CAACTTCAGG
Statistics
Matches: 134, Mismatches: 25, Indels: 44
0.66 0.12 0.22
Matches are distributed among these distances:
78 24 0.18
79 24 0.18
80 14 0.10
81 6 0.04
83 2 0.01
84 4 0.03
85 2 0.01
87 6 0.04
88 15 0.11
89 25 0.19
90 12 0.09
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.29
Consensus pattern (78 bp):
ATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTACTCCGCTACAACTTTAGGGAGATAG
GACGGTGGCTTAA
Found at i:98226467 original size:168 final size:168
Alignment explanation
Indices: 98226144--98226590 Score: 718
Period size: 168 Copynumber: 2.7 Consensus size: 168
98226134 TTGTGACTTC
* * * * * *
98226144 GATCTGCTCCACTGGAGATGAGATCTGTGACCTTTAGCCTACTCCACTAGAACTTTAGGGAGATA
1 GATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTACTCCGCTACAACTTTAGGGAGATA
** * * *
98226209 GGGTGGTGGATT-AATCTGCTTCACTGCAATTTC-GAAAGACAGGATTTTACAATCTTCAGCCTG
66 GGACGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAGGATTTTACAATCTTCAGCCTG
98226272 TTGCCCTACTACTTAGGAGGTTAAGGCTTGCCTTCTTT
131 TTGCCCTACTACTTAGGAGGTTAAGGCTTGCCTTCTTT
98226310 GATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTACTCCGCTACAACTTTAGGGAGATA
1 GATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTACTCCGCTACAACTTTAGGGAGATA
* *
98226375 GGACGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAGGATTTTGCAATCTTCGGCCTG
66 GGACGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAGGATTTTACAATCTTCAGCCTG
*
98226440 TTGCCCTACTACTTAGGGGGTTAAGGCTTGCCTTCTTT
131 TTGCCCTACTACTTAGGAGGTTAAGGCTTGCCTTCTTT
* * *
98226478 AATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTACTCCGCTATAACTTTAGGGAAATA
1 GATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTACTCCGCTACAACTTTAGGGAGATA
*
98226543 GGACGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACATGATT
66 GGACGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAGGATT
98226591 CGCCGTTTTC
Statistics
Matches: 261, Mismatches: 18, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
166 68 0.26
167 20 0.08
168 173 0.66
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (168 bp):
GATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTACTCCGCTACAACTTTAGGGAGATA
GGACGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAGGATTTTACAATCTTCAGCCTG
TTGCCCTACTACTTAGGAGGTTAAGGCTTGCCTTCTTT
Found at i:98238789 original size:131 final size:131
Alignment explanation
Indices: 98238306--98238836 Score: 444
Period size: 131 Copynumber: 4.0 Consensus size: 131
98238296 TTGCCTCACC
* * * * * * *
98238306 TTAGAAAATACGAGTGAAATTCCGAAGAGATATTCGATTATTTTGAACAAAAGGGAGATTGCAAC
1 TTAGAAAACATGAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATCGCAAC
* ** * * ** * *
98238371 CCAGCACGATAGGGTATTATTCCCCGAATTGCCAAACACTGAACATTTCTTTCGTTTTAAA-GAG
66 CCAGCACGATAGGGCACGATTCCTCGAATTGCCAAACAC-CAACATCGCCTTCGTTTTAAAGGAT
98238435 TT
130 TT
* * ** * * * * *
98238437 TTAGAAAACGTGAGTGAAATTCCGAAGGGATCTTCGATCGTTTCGAACAAATGAAAAAGCGGAAC
1 TTAGAAAACATGAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATCGCAAC
* * * * *
98238502 CCAGCACGATAGGGCACAATT-CTCGAATTGCCAAACATCGAACAACGCCTTTGTTTTAAAGGGT
66 CCAGCACGATAGGGCACGATTCCTCGAATTGCCAAACA-CCAACATCGCCTTCGTTTTAAA-GGA
98238566 TTT
129 TTT
* * * * * *
98238569 CTTAAAAAAAACATGAGTGAAA-ACCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCA
1 -TT--AGAAAACATGAGTGAAATTCC-GAAGGGATATTCGATTATTTTGAACAAACGAGAAATCG
* * * *
98238633 CAACCCAGCACGATAGGGCATGATT-CTCGAATTGTCAAACACCAAGTC-TTGCCTTAGTTTTAA
62 CAACCCAGCACGATAGGGCACGATTCCTCGAATTGCCAAACACCAA--CATCGCCTTCGTTTTAA
98238696 AGGATTT
125 AGGATTT
* * ** * * *
98238703 TTAGAAGACCTGAGTGAAATTTTGAAGGGATATTTGATTATTTTGAGCAAACGAGAAATTGCAAC
1 TTAGAAAACATGAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATCGCAAC
* * * * * *
98238768 CCAGCACGTTAGGGCACGATTCCGCGAATTACCAAATATCAA-ATCTCGCCTTCGTTTTAAAGAA
66 CCAGCACGATAGGGCACGATTCCTCGAATTGCCAAACACCAACA--TCGCCTTCGTTTTAAAGGA
98238832 TTT
129 TTT
98238835 TT
1 TT
98238837 CAATAAATAA
Statistics
Matches: 316, Mismatches: 70, Indels: 27
0.77 0.17 0.07
Matches are distributed among these distances:
130 31 0.10
131 137 0.43
132 39 0.12
133 4 0.01
134 10 0.03
135 94 0.30
136 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (131 bp):
TTAGAAAACATGAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATCGCAAC
CCAGCACGATAGGGCACGATTCCTCGAATTGCCAAACACCAACATCGCCTTCGTTTTAAAGGATT
T
Found at i:98240600 original size:30 final size:25
Alignment explanation
Indices: 98240564--98240630 Score: 71
Period size: 25 Copynumber: 2.5 Consensus size: 25
98240554 AAGAGCCTAT
*
98240564 TCAGCCGAACCCTAGCCTCCATTCTTCTTC
1 TCAGCCGAACCCTA-CC-CC-TT-TT-TGC
*
98240594 TCAGCCGAATCCTACCCCTTTTTGC
1 TCAGCCGAACCCTACCCCTTTTTGC
98240619 TCAGCCGAACCC
1 TCAGCCGAACCC
98240631 CGAAGGCTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 13 0.38
26 2 0.06
27 2 0.06
28 2 0.06
29 2 0.06
30 13 0.38
ACGTcount: A:0.18, C:0.43, G:0.12, T:0.27
Consensus pattern (25 bp):
TCAGCCGAACCCTACCCCTTTTTGC
Found at i:98241931 original size:168 final size:168
Alignment explanation
Indices: 98241613--98242055 Score: 735
Period size: 168 Copynumber: 2.6 Consensus size: 168
98241603 TTGTGACTTC
* *
98241613 GATCTGCTCCACTGGAGACGAGATCTGTGACCTTCAGCCTACTCCACTACAACTTTAGGGAGATA
1 GATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTACTCCACTACAACTTTAGGGAGATA
** * * * * *
98241678 GGGTGGTGGATT-AATCTGCTTCACTACAATTTCAGGAAGACAGGATTTTTCAATCTTCAGCCTG
66 GGACGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAGAATTTTGCAATCTTCAGCCTG
98241742 TTGCCCTACTACTTAGGGGGTTAAGGCTTGCCTTCTTT
131 TTGCCCTACTACTTAGGGGGTTAAGGCTTGCCTTCTTT
*
98241780 GATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTAATCCACTACAACTTTAGGGAGATA
1 GATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTACTCCACTACAACTTTAGGGAGATA
98241845 GGACGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAGAATTTTGCAATCTTCAGCCTG
66 GGACGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAGAATTTTGCAATCTTCAGCCTG
**
98241910 TTGCCCTACTACTTAGGGGGTTAAGGCTTGTTTTCTTT
131 TTGCCCTACTACTTAGGGGGTTAAGGCTTGCCTTCTTT
* * * *
98241948 GATCTGCTCCACTGGAGACGAGATCTACGATCTTCAGCCTACTCCGCTAAAATTTTAGGGAGATA
1 GATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTACTCCACTACAACTTTAGGGAGATA
98242013 GGACGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACA
66 GGACGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACA
98242056 TGATTCGACG
Statistics
Matches: 258, Mismatches: 17, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
167 71 0.28
168 187 0.72
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.29
Consensus pattern (168 bp):
GATCTGCTCCACTGGAGACGAGATCTGCGATCTTCAGCCTACTCCACTACAACTTTAGGGAGATA
GGACGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAGAATTTTGCAATCTTCAGCCTG
TTGCCCTACTACTTAGGGGGTTAAGGCTTGCCTTCTTT
Found at i:98242090 original size:45 final size:44
Alignment explanation
Indices: 98242026--98242236 Score: 165
Period size: 45 Copynumber: 4.8 Consensus size: 44
98242016 CGGTGGCTTA
* *
98242026 AATCTGCTTCACTGCAACTTCAGGAAGACATGATTCGACGTTTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGACAAGA-TCGACGTTTTC
* *
98242071 AATCTGCTCCACTGCAACTTCAGGGAA-ACAAGATCTACGATCTTC
1 AATCTGCTCCACTGCAACTTCA-GGAAGACAAGATCGACG-TTTTC
* * * * * ** * ** * *
98242116 AACCTACTCCACTACAACTTTAGGGAGTTAGGAT-GGTGGTTTA
1 AATCTGCTCCACTGCAACTTCAGGAAGACAAGATCGACGTTTTC
* * * *
98242159 AATTTGCTTCACTGCAACTTCAAGAAGACAAGATTCGTCGTTTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGACAAGA-TCGACGTTTTC
* * *
98242204 GATCTGTTCCACTGCAACTTCAGGGAGACAAGA
1 AATCTGCTCCACTGCAACTTCAGGAAGACAAGA
98242237 CCTGTAGAAT
Statistics
Matches: 122, Mismatches: 39, Indels: 10
0.71 0.23 0.06
Matches are distributed among these distances:
43 24 0.20
44 10 0.08
45 84 0.69
46 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGAAGACAAGATCGACGTTTTC
Found at i:98242128 original size:168 final size:167
Alignment explanation
Indices: 98241619--98242128 Score: 449
Period size: 168 Copynumber: 3.0 Consensus size: 167
98241609 CTTCGATCTG
** * * * **
98241619 CTCCACTGGAGACGAGATCTGTGACCTTCAGCCTACTCCACTACAACTTTAGGGAGATAGGGTGG
1 CTCCACTGGAGACGAGATCTACGATCTTCAGCCTAATCCACTAAAACTTTAGGGAGATAGGACGG
* * * * ** * *
98241684 TGGATT-AATCTGCTTCACTACAATTTCAGGAAGACAGGATTTTTCAATCTTCAGCCTGTTGCCC
66 TGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAGAATTTCGCAATCTTCAACCTGCTGCCC
* **** * ** * *
98241748 TACTACTTAGGGGGTTAAGGCTTGCCT-TCTTTGATCTG
131 TACAACTTAGGGAAACAAGGC-T-CGTATCTTCAACCTA
* *
98241786 CTCCACTGGAGACGAGATCTGCGATCTTCAGCCTAATCCACTACAACTTTAGGGAGATAGGACGG
1 CTCCACTGGAGACGAGATCTACGATCTTCAGCCTAATCCACTAAAACTTTAGGGAGATAGGACGG
* * *
98241851 TGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAGAATTTTGCAATCTTCAGCCTGTTGCCC
66 TGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAGAATTTCGCAATCTTCAACCTGCTGCCC
* **** * * ** * *
98241916 TACTACTTAGGGGGTTAAGGCTTGTTTTCTTTGATCTG
131 TACAACTTAGGGAAACAAGGCTCG-TATCTTCAACCTA
* * *
98241954 CTCCACTGGAGACGAGATCTACGATCTTCAGCCTACTCCGCTAAAATTTTAGGGAGATAGGACGG
1 CTCCACTGGAGACGAGATCTACGATCTTCAGCCTAATCCACTAAAACTTTAGGGAGATAGGACGG
* * *
98242019 TGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACATG-A-TTCG-ACGTTTTCAATCTGCT-C
66 TGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACA-GAATTTCGCA-ATCTTCAACCTGCTGC
* *
98242080 CACTGCAACTTCAGGGAAACAAGATCTACG-ATCTTCAACCTA
129 C-CTACAACTT-AGGGAAACAAG-GCT-CGTATCTTCAACCTA
98242122 CTCCACT
1 CTCCACT
98242129 ACAACTTTAG
Statistics
Matches: 298, Mismatches: 36, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
166 3 0.01
167 86 0.29
168 205 0.69
169 3 0.01
170 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (167 bp):
CTCCACTGGAGACGAGATCTACGATCTTCAGCCTAATCCACTAAAACTTTAGGGAGATAGGACGG
TGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGACAGAATTTCGCAATCTTCAACCTGCTGCCC
TACAACTTAGGGAAACAAGGCTCGTATCTTCAACCTA
Found at i:98242209 original size:133 final size:133
Alignment explanation
Indices: 98241968--98242236 Score: 412
Period size: 133 Copynumber: 2.0 Consensus size: 133
98241958 ACTGGAGACG
* * *
98241968 AGATCTACGATCTTCAGCCTACTCCGCTAAAATTTTAGGGAGATAGGACGGTGGCTTAAATCTGC
1 AGATCTACGATCTTCAACCTACTCCACTAAAACTTTAGGGAGATAGGACGGTGGCTTAAATCTGC
* *
98242033 TTCACTGCAACTTCAGGAAGACATGATTCGACGTTTTCAATCTGCTCCACTGCAACTTCAGGGAA
66 TTCACTGCAACTTCAAGAAGACAAGATTCGACGTTTTCAATCTGCTCCACTGCAACTTCAGGGAA
98242098 ACA
131 ACA
* * * * *
98242101 AGATCTACGATCTTCAACCTACTCCACTACAACTTTAGGGAGTTAGGATGGTGGTTTAAATTTGC
1 AGATCTACGATCTTCAACCTACTCCACTAAAACTTTAGGGAGATAGGACGGTGGCTTAAATCTGC
* * * *
98242166 TTCACTGCAACTTCAAGAAGACAAGATTCGTCGTTTTCGATCTGTTCCACTGCAACTTCAGGGAG
66 TTCACTGCAACTTCAAGAAGACAAGATTCGACGTTTTCAATCTGCTCCACTGCAACTTCAGGGAA
98242231 ACA
131 ACA
98242234 AGA
1 AGA
98242237 CCTGTAGAAT
Statistics
Matches: 122, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
133 122 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (133 bp):
AGATCTACGATCTTCAACCTACTCCACTAAAACTTTAGGGAGATAGGACGGTGGCTTAAATCTGC
TTCACTGCAACTTCAAGAAGACAAGATTCGACGTTTTCAATCTGCTCCACTGCAACTTCAGGGAA
ACA
Found at i:98242404 original size:14 final size:14
Alignment explanation
Indices: 98242385--98242412 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
98242375 CTTATGTCAA
98242385 ATGATTAGAATGCT
1 ATGATTAGAATGCT
98242399 ATGATTAGAATGCT
1 ATGATTAGAATGCT
98242413 TATGTCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
ATGATTAGAATGCT
Found at i:98243390 original size:24 final size:25
Alignment explanation
Indices: 98243335--98243384 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
98243325 GTTTGGAAAG
*
98243335 AAAATAAAAGACGTGATCATTTTTT
1 AAAATAAAAAACGTGATCATTTTTT
*
98243360 AAAATAAAAAATGTGAT-ATTTTTT
1 AAAATAAAAAACGTGATCATTTTTT
98243384 A
1 A
98243385 TCATAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.48, C:0.04, G:0.10, T:0.38
Consensus pattern (25 bp):
AAAATAAAAAACGTGATCATTTTTT
Found at i:98251661 original size:10 final size:10
Alignment explanation
Indices: 98251648--98251681 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
98251638 TGATAAATAC
98251648 AAATAAAGAT
1 AAATAAAGAT
98251658 AAATAAAGAT
1 AAATAAAGAT
98251668 AAATGAAA-AT
1 AAAT-AAAGAT
98251678 AAAT
1 AAAT
98251682 CTTAAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 20 0.87
11 3 0.13
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (10 bp):
AAATAAAGAT
Found at i:98251669 original size:16 final size:16
Alignment explanation
Indices: 98251634--98251680 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
98251624 AATTAAATAC
98251634 TAAATGATAAATACAAA
1 TAAATGATAAATA-AAA
98251651 TAAA-GATAAATAAAGA
1 TAAATGATAAATAAA-A
98251667 TAAATGA-AAATAAA
1 TAAATGATAAATAAA
98251681 TCTTAAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 2 0.07
16 20 0.71
17 6 0.21
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.21
Consensus pattern (16 bp):
TAAATGATAAATAAAA
Found at i:98253293 original size:21 final size:21
Alignment explanation
Indices: 98253269--98253309 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
98253259 GAGAATTTTT
*
98253269 ATTATTAATAA-AATAAATAAA
1 ATTATAAATAATAA-AAATAAA
98253290 ATTATAAATAATAAAAATAA
1 ATTATAAATAATAAAAATAA
98253310 TAAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (21 bp):
ATTATAAATAATAAAAATAAA
Found at i:98253301 original size:24 final size:23
Alignment explanation
Indices: 98253274--98253330 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 23
98253264 TTTTTATTAT
*
98253274 TAAT-AAAATAAATAAAATTATAAA
1 TAATAAAAAT-AATAAAAATA-AAA
98253298 TAATAAAAATAATAAAAATAAAA
1 TAATAAAAATAATAAAAATAAAA
*
98253321 CAATAAAAAT
1 TAATAAAAAT
98253331 TGGGTTGCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 12 0.40
24 13 0.43
25 5 0.17
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.25
Consensus pattern (23 bp):
TAATAAAAATAATAAAAATAAAA
Found at i:98253304 original size:15 final size:15
Alignment explanation
Indices: 98253274--98253327 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
98253264 TTTTTATTAT
98253274 TAATAAAATAAATAAAA
1 TAAT-AAAT-AATAAAA
*
98253291 TTATAAATAATAAAAA
1 TAATAAATAAT-AAAA
98253307 TAATAAA-AATAAAA
1 TAATAAATAATAAAA
*
98253321 CAATAAA
1 TAATAAA
98253328 AATTGGGTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
14 10 0.30
15 6 0.18
16 14 0.42
17 3 0.09
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (15 bp):
TAATAAATAATAAAA
Found at i:98253329 original size:15 final size:15
Alignment explanation
Indices: 98253283--98253329 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
98253273 TTAATAAAAT
*
98253283 AAATAAAATTATAAA
1 AAATAAAATAATAAA
*
98253298 TAATAAAAATAAT-AA
1 AAAT-AAAATAATAAA
*
98253313 AAATAAAACAATAAA
1 AAATAAAATAATAAA
98253328 AA
1 AA
98253330 TTGGGTTGCC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 7 0.27
15 12 0.46
16 7 0.27
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (15 bp):
AAATAAAATAATAAA
Found at i:98259771 original size:10 final size:10
Alignment explanation
Indices: 98259755--98259798 Score: 63
Period size: 10 Copynumber: 4.4 Consensus size: 10
98259745 TGATAAATAC
98259755 AAATAAAGAT
1 AAATAAAGAT
*
98259765 AATTAAAGAT
1 AAATAAAGAT
98259775 AAATAAAGAT
1 AAATAAAGAT
98259785 AAATGAAA-AT
1 AAAT-AAAGAT
98259795 AAAT
1 AAAT
98259799 CCTAAAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
10 28 0.90
11 3 0.10
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.23
Consensus pattern (10 bp):
AAATAAAGAT
Found at i:98259796 original size:20 final size:20
Alignment explanation
Indices: 98259741--98259798 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 20
98259731 AATTAAATAC
98259741 TAAATGATAAATACAAATAAAGA
1 TAAATGA-AAAT--AAATAAAGA
*
98259764 T-AATTAAAGATAAATAAAGA
1 TAAATGAAA-ATAAATAAAGA
98259784 TAAATGAAAATAAAT
1 TAAATGAAAATAAAT
98259799 CCTAAAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
20 16 0.52
21 8 0.26
22 6 0.19
23 1 0.03
ACGTcount: A:0.66, C:0.02, G:0.09, T:0.24
Consensus pattern (20 bp):
TAAATGAAAATAAATAAAGA
Found at i:98263295 original size:19 final size:20
Alignment explanation
Indices: 98263257--98263297 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
98263247 TATATAACTT
**
98263257 TTTTTAAAAAATATTTTTAA
1 TTTTTAAAAAATATAATTAA
98263277 TTTTTAAAAAAT-TAATTAA
1 TTTTTAAAAAATATAATTAA
98263296 TT
1 TT
98263298 CCTAACATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TTTTTAAAAAATATAATTAA
Found at i:98264571 original size:29 final size:30
Alignment explanation
Indices: 98264528--98264605 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
98264518 TTTTTTTTCT
98264528 TTTTTAATTTT-AGAATTTAG-TCTATATA
1 TTTTTAATTTTAAGAATTTAGTTCTATATA
* * *
98264556 TTTTTAATTTTAAGAATTTAGTTTTTTTTA
1 TTTTTAATTTTAAGAATTTAGTTCTATATA
98264586 TTTTTATATTTTAA-AATTTA
1 TTTTTA-ATTTTAAGAATTTA
98264606 AATCAATATT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
28 11 0.25
29 9 0.20
30 17 0.39
31 7 0.16
ACGTcount: A:0.31, C:0.01, G:0.05, T:0.63
Consensus pattern (30 bp):
TTTTTAATTTTAAGAATTTAGTTCTATATA
Found at i:98264649 original size:21 final size:23
Alignment explanation
Indices: 98264625--98264670 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
98264615 TATTAATTTT
* *
98264625 TTTTAAATTAT-TAG-TATAATA
1 TTTTAAAATATCTAGATAAAATA
98264646 TTTTAAAATATCTAGATAAAATA
1 TTTTAAAATATCTAGATAAAATA
98264669 TT
1 TT
98264671 ATAATATTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 10 0.48
22 3 0.14
23 8 0.38
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (23 bp):
TTTTAAAATATCTAGATAAAATA
Found at i:98265142 original size:22 final size:21
Alignment explanation
Indices: 98265097--98265138 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
98265087 TATTGTATTT
*
98265097 TTTTTATTTTTAAAATCTTAA
1 TTTTTATTTTCAAAATCTTAA
98265118 TTTTTATATTTCAAAAT-TTAA
1 TTTTTAT-TTTCAAAATCTTAA
98265139 ATTTAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTTATTTTCAAAATCTTAA
Found at i:98270677 original size:15 final size:15
Alignment explanation
Indices: 98270637--98270693 Score: 59
Period size: 15 Copynumber: 4.0 Consensus size: 15
98270627 TGTTGATGGA
98270637 GCCCCCTCCACCT--
1 GCCCCCTCCACCTCC
* *
98270650 -CCTCCTCCGCCTCC
1 GCCCCCTCCACCTCC
98270664 GCCTCCC-CCACCTCC
1 GCC-CCCTCCACCTCC
98270679 GCCCCCTCCACCTCC
1 GCCCCCTCCACCTCC
98270694 TCCGGCACTT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
12 10 0.29
14 3 0.09
15 20 0.57
16 2 0.06
ACGTcount: A:0.05, C:0.72, G:0.07, T:0.16
Consensus pattern (15 bp):
GCCCCCTCCACCTCC
Found at i:98277033 original size:16 final size:17
Alignment explanation
Indices: 98277003--98277035 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
98276993 GTAATTTAAT
*
98277003 AAAATAATTATATATAA
1 AAAATAATTAAATATAA
98277020 AAAATAA-TAAATATAA
1 AAAATAATTAAATATAA
98277036 TTATTATGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAATAATTAAATATAA
Found at i:98279920 original size:25 final size:25
Alignment explanation
Indices: 98279879--98279930 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 25
98279869 TTTTTGAATT
*
98279879 TATTTATTTTTAAAAATTATAATTAA
1 TATTTATTTTTAAAAATAATAA-TAA
98279905 TATTTATTTTT-AAAATAATAATAA
1 TATTTATTTTTAAAAATAATAATAA
98279929 TA
1 TA
98279931 ATAATAATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 5 0.20
25 9 0.36
26 11 0.44
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
TATTTATTTTTAAAAATAATAATAA
Found at i:98281989 original size:351 final size:351
Alignment explanation
Indices: 98281346--98282036 Score: 1301
Period size: 351 Copynumber: 2.0 Consensus size: 351
98281336 TGACATTTGC
98281346 AATATTGCGTAAAACAAGAAAGAGGCAGTTTAAAGTATACGAAATTAAATAAATAAAATTGGAAC
1 AATATTGCGTAAAACAAGAAAGAGGCAGTTTAAAGTATACGAAATTAAATAAATAAAATTGGAAC
*
98281411 TACACTAAAACAAAAGGTAAAGAGCAAATTTGAAAATAAAGTAGAATAAACCAATTTAATAAAAA
66 TACACAAAAACAAAAGGTAAAGAGCAAATTTGAAAATAAAGTAGAATAAACCAATTTAATAAAAA
** *
98281476 CACCAGGCTCAGGTACGTTGTCAGTTTCAATTTCGAAATTGATTATAAATTATGAATGTCTTCTT
131 CACCAGGCTCAGGTACGGCGTCAGTTTCAAATTCGAAATTGATTATAAATTATGAATGTCTTCTT
*
98281541 ACTGTATGATAAGTCGATTAAAGTGATCGGCAACTTCAAACCACTAATCATTTCTTAGTTGTAAA
196 ACTGTATGATAAGTCGATTAAAGTGATAGGCAACTTCAAACCACTAATCATTTCTTAGTTGTAAA
* *
98281606 TTAATTGCGGAAGTATCCTAACAATTAACCCTTGTCAAATGAACAACCTTAAGATCAGCTCCTAT
261 TTAACTGCGGAAGTATCCTAACAATTAACCCTTGTCAAATGAACAACCTTAAGAGCAGCTCCTAT
98281671 AATTTAATTCTTTGAGTAGCTCCTAT
326 AATTTAATTCTTTGAGTAGCTCCTAT
98281697 AATATTGCGTAAAACAAGAAAGAGGCAGTTTAAAGTATACGAAATTAAATAAATAAAATTGGAAC
1 AATATTGCGTAAAACAAGAAAGAGGCAGTTTAAAGTATACGAAATTAAATAAATAAAATTGGAAC
98281762 TACACAAAAACAAAAGGTAAAGAGCAAATTTGAAAATAAAGTAGAATAAACCAATTTAATAAAAA
66 TACACAAAAACAAAAGGTAAAGAGCAAATTTGAAAATAAAGTAGAATAAACCAATTTAATAAAAA
*
98281827 CTCCAGGCTCAGGTACGGCGTCAGTTTCAAATTCGAAATTGATTATAAATTATGAATGTCTTCTT
131 CACCAGGCTCAGGTACGGCGTCAGTTTCAAATTCGAAATTGATTATAAATTATGAATGTCTTCTT
*
98281892 ACTGTATGATAAGTCGATTAAAGTGATATGCAACTTCAAACCACTAATCATTTCTTAGTTGTAAA
196 ACTGTATGATAAGTCGATTAAAGTGATAGGCAACTTCAAACCACTAATCATTTCTTAGTTGTAAA
98281957 TTAACTGCGGAAGTATCCTAACAATTAACCCTTGTCAAATGAACAACCTTAAGAGCAGCTCCTAT
261 TTAACTGCGGAAGTATCCTAACAATTAACCCTTGTCAAATGAACAACCTTAAGAGCAGCTCCTAT
98282022 AATTTAATTCTTTGA
326 AATTTAATTCTTTGA
98282037 CAGCCTTACG
Statistics
Matches: 331, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
351 331 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (351 bp):
AATATTGCGTAAAACAAGAAAGAGGCAGTTTAAAGTATACGAAATTAAATAAATAAAATTGGAAC
TACACAAAAACAAAAGGTAAAGAGCAAATTTGAAAATAAAGTAGAATAAACCAATTTAATAAAAA
CACCAGGCTCAGGTACGGCGTCAGTTTCAAATTCGAAATTGATTATAAATTATGAATGTCTTCTT
ACTGTATGATAAGTCGATTAAAGTGATAGGCAACTTCAAACCACTAATCATTTCTTAGTTGTAAA
TTAACTGCGGAAGTATCCTAACAATTAACCCTTGTCAAATGAACAACCTTAAGAGCAGCTCCTAT
AATTTAATTCTTTGAGTAGCTCCTAT
Found at i:98286208 original size:21 final size:21
Alignment explanation
Indices: 98286182--98286224 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
98286172 CTATAATGTA
98286182 ACTTAATATTAGTTAAACTTT
1 ACTTAATATTAGTTAAACTTT
98286203 ACTTAATATTAGTTAAACTTT
1 ACTTAATATTAGTTAAACTTT
98286224 A
1 A
98286225 GGTAACTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.47
Consensus pattern (21 bp):
ACTTAATATTAGTTAAACTTT
Found at i:98286316 original size:25 final size:27
Alignment explanation
Indices: 98286287--98286342 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 27
98286277 ACATAAAAAT
*
98286287 AATAATAATAA-CA-TTTATTTATTTC
1 AATAATAATAATCAGTTTAATTATTTC
*
98286312 TAT-A-AATAATCAGTTTAATTATTTC
1 AATAATAATAATCAGTTTAATTATTTC
98286337 AATAAT
1 AATAAT
98286343 TTATCAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 6
0.73 0.09 0.18
Matches are distributed among these distances:
23 5 0.21
24 3 0.12
25 15 0.62
26 1 0.04
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.46
Consensus pattern (27 bp):
AATAATAATAATCAGTTTAATTATTTC
Found at i:98294675 original size:23 final size:23
Alignment explanation
Indices: 98294630--98294676 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
98294620 ACAAAAGGAT
****
98294630 AAAAATTAAAATTCTTTTTTTAA
1 AAAAATTAAAATTCTAAAATTAA
98294653 AAAAATTAAAATTCTAAAATTAA
1 AAAAATTAAAATTCTAAAATTAA
98294676 A
1 A
98294677 GTAAATAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.38
Consensus pattern (23 bp):
AAAAATTAAAATTCTAAAATTAA
Found at i:98301981 original size:2 final size:2
Alignment explanation
Indices: 98301944--98301972 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
98301934 GTGTGTGTGT
98301944 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
98301973 CGCAGAGAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:98306460 original size:23 final size:22
Alignment explanation
Indices: 98306427--98306499 Score: 83
Period size: 23 Copynumber: 3.1 Consensus size: 22
98306417 AATTATAGTA
*
98306427 TTGCACCGAAGTGTCACTTTCAT
1 TTGCA-CGAAGTGCCACTTTCAT
*
98306450 TTGCACAGAAGTGCCACATTTCAA
1 TTGCAC-GAAGTGCCAC-TTTCAT
*
98306474 TTGCATCGAAGTGCCGCTTTCAT
1 TTGCA-CGAAGTGCCACTTTCAT
98306497 TTG
1 TTG
98306500 TGCGCATAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
22 1 0.02
23 22 0.51
24 19 0.44
25 1 0.02
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (22 bp):
TTGCACGAAGTGCCACTTTCAT
Found at i:98310159 original size:5 final size:5
Alignment explanation
Indices: 98310136--98310218 Score: 53
Period size: 5 Copynumber: 15.8 Consensus size: 5
98310126 ATAAATAAAT
* * * *
98310136 AAAAG AAATG AAATA- AAAAG AAAAG AAACG AAACG AAACAA AGAAAG
1 AAAAG AAAAG AAA-AG AAAAG AAAAG AAAAG AAAAG AAA-AG A-AAAG
*
98310183 AATAG -AAAG AAAAG AGAAAG AGAAAG AGAAAG AAAA
1 AAAAG AAAAG AAAAG A-AAAG A-AAAG A-AAAG AAAA
98310219 AGGGGAAAGT
Statistics
Matches: 64, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
4 4 0.06
5 38 0.59
6 20 0.31
7 2 0.03
ACGTcount: A:0.72, C:0.04, G:0.20, T:0.04
Consensus pattern (5 bp):
AAAAG
Found at i:98310204 original size:6 final size:6
Alignment explanation
Indices: 98310186--98310220 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
98310176 AAGAAAGAAT
*
98310186 AGAAAG A-AAAG AGAAAG AGAAAG AGAAAG AAAAAG
1 AGAAAG AGAAAG AGAAAG AGAAAG AGAAAG AGAAAG
98310221 GGGAAAGTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (6 bp):
AGAAAG
Found at i:98310220 original size:12 final size:12
Alignment explanation
Indices: 98310175--98310220 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
98310165 GAAACGAAAC
*
98310175 AAAGAAAGAATAG
1 AAAGAAA-AAGAG
98310188 AAAG-AAAAGAG
1 AAAGAAAAAGAG
*
98310199 AAAGAGAAAGAG
1 AAAGAAAAAGAG
98310211 AAAGAAAAAG
1 AAAGAAAAAG
98310221 GGGAAAGTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
11 8 0.28
12 17 0.59
13 4 0.14
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (12 bp):
AAAGAAAAAGAG
Found at i:98311242 original size:19 final size:19
Alignment explanation
Indices: 98311213--98311262 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
98311203 TGTCATGATT
98311213 GATATTGAATAGTGAAATGA
1 GATA-TGAATAGTGAAATGA
98311233 GATATGAATAGTGAAATGA
1 GATATGAATAGTGAAATGA
*
98311252 GATATGGATAG
1 GATATGAATAG
98311263 AGATACATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 25 0.86
20 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (19 bp):
GATATGAATAGTGAAATGA
Found at i:98315850 original size:19 final size:20
Alignment explanation
Indices: 98315813--98315853 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
98315803 TACAACACAA
*
98315813 TTCAATTTCATATTGAATAT
1 TTCAATTTCATATTCAATAT
*
98315833 TTCAATTT-TTATTCAATAT
1 TTCAATTTCATATTCAATAT
98315852 TT
1 TT
98315854 GCCTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (20 bp):
TTCAATTTCATATTCAATAT
Found at i:98316287 original size:12 final size:12
Alignment explanation
Indices: 98316272--98316339 Score: 59
Period size: 12 Copynumber: 5.5 Consensus size: 12
98316262 GCTTCTTTCC
98316272 TTCTTTCTCTTT
1 TTCTTTCTCTTT
98316284 TTCTTTCT-TTCT
1 TTCTTTCTCTT-T
98316296 TTCTTT-TCTTT
1 TTCTTTCTCTTT
* *
98316307 CTTATTTTTGCTTT
1 -TTCTTTCT-CTTT
*
98316321 TGTCTTTCTCTAT
1 T-TCTTTCTCTTT
98316334 TTCTTT
1 TTCTTT
98316340 TACTTATTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
11 4 0.09
12 27 0.59
13 6 0.13
14 9 0.20
ACGTcount: A:0.03, C:0.21, G:0.03, T:0.74
Consensus pattern (12 bp):
TTCTTTCTCTTT
Found at i:98316289 original size:20 final size:21
Alignment explanation
Indices: 98316264--98316309 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
98316254 GTGCGTCTGC
98316264 TTCTTTCCTTCTTTCTCTT-T
1 TTCTTTCCTTCTTTCTCTTCT
* *
98316284 TTCTTTCTTTCTTTCTTTTCT
1 TTCTTTCCTTCTTTCTCTTCT
98316305 TTCTT
1 TTCTT
98316310 ATTTTTGCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (21 bp):
TTCTTTCCTTCTTTCTCTTCT
Found at i:98316290 original size:4 final size:4
Alignment explanation
Indices: 98316264--98316309 Score: 58
Period size: 4 Copynumber: 11.2 Consensus size: 4
98316254 GTGCGTCTGC
*
98316264 TTCT TTCC TTCT TTCT CTT-T TTCT TTCT TTCT TTCTT TTCT TTCT T
1 TTCT TTCT TTCT TTCT -TTCT TTCT TTCT TTCT TTC-T TTCT TTCT T
98316310 ATTTTTGCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
3 2 0.05
4 29 0.78
5 6 0.16
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TTCT
Found at i:98316326 original size:21 final size:19
Alignment explanation
Indices: 98316264--98316335 Score: 67
Period size: 17 Copynumber: 3.7 Consensus size: 19
98316254 GTGCGTCTGC
* *
98316264 TTCTTTCCTTCTTTCTCTTT
1 TTCTTT-CTTATTTTTCTTT
*
98316284 TTCTTTCTT-TCTTTC-TT
1 TTCTTTCTTATTTTTCTTT
98316301 TTCTTTCTTATTTTTGCTTT
1 TTCTTTCTTATTTTT-CTTT
98316321 TGTCTTTCTCTATTT
1 T-TCTTTCT-TATTT
98316336 CTTTTACTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
17 11 0.25
18 8 0.18
19 4 0.09
20 9 0.20
21 7 0.16
22 5 0.11
ACGTcount: A:0.03, C:0.22, G:0.03, T:0.72
Consensus pattern (19 bp):
TTCTTTCTTATTTTTCTTT
Found at i:98318145 original size:21 final size:20
Alignment explanation
Indices: 98318121--98318170 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
98318111 AATCTTAGAC
*
98318121 TAAAATTTATTAGAAAATCTA
1 TAAAATTTATTAAAAAATC-A
* *
98318142 TAAAAATAATTAAAAAATCA
1 TAAAATTTATTAAAAAATCA
*
98318162 TAAATTTTA
1 TAAAATTTA
98318171 AAAACTATAT
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (20 bp):
TAAAATTTATTAAAAAATCA
Found at i:98320100 original size:32 final size:32
Alignment explanation
Indices: 98320060--98320124 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
98320050 TTAAAAGTTG
*
98320060 AAATTTTTT-TACCAACTTTTAAGGGACTTAAA
1 AAATTTTTTCT-CCAACTTTTAAGGAACTTAAA
*
98320092 AAATTTTTTCTCCAACTTTTAAGGAATTTAAA
1 AAATTTTTTCTCCAACTTTTAAGGAACTTAAA
98320124 A
1 A
98320125 CCCCATTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 29 0.97
33 1 0.03
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (32 bp):
AAATTTTTTCTCCAACTTTTAAGGAACTTAAA
Found at i:98324391 original size:49 final size:49
Alignment explanation
Indices: 98324332--98324427 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
98324322 AATCAATAAC
98324332 AGTAAAATTACTTTTTATCCTTCCAAAAATGATAAGAAATTAATTTAAT
1 AGTAAAATTACTTTTTATCCTTCCAAAAATGATAAGAAATTAATTTAAT
*
98324381 AGTAAAATTACTTTTTGTCCTTCCAAAAATGATAAGAAATTAATTTA
1 AGTAAAATTACTTTTTATCCTTCCAAAAATGATAAGAAATTAATTTA
98324428 CTCCTTTAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (49 bp):
AGTAAAATTACTTTTTATCCTTCCAAAAATGATAAGAAATTAATTTAAT
Found at i:98326489 original size:23 final size:23
Alignment explanation
Indices: 98326459--98326504 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
98326449 AAACAAACAC
98326459 TGGAAAACCAGGAAAATATTTTT
1 TGGAAAACCAGGAAAATATTTTT
98326482 TGGAAAACCAGGAAAATATTTTT
1 TGGAAAACCAGGAAAATATTTTT
98326505 CGTAAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.30
Consensus pattern (23 bp):
TGGAAAACCAGGAAAATATTTTT
Found at i:98326511 original size:23 final size:23
Alignment explanation
Indices: 98326460--98326511 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
98326450 AACAAACACT
*
98326460 GGAAAACCAGGAAAATATTTTTT
1 GGAAAACCAGGAAAATATTTTTC
98326483 GGAAAACCAGGAAAATATTTTTC
1 GGAAAACCAGGAAAATATTTTTC
*
98326506 GTAAAA
1 GGAAAA
98326512 TATTTTCCTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.46, C:0.10, G:0.17, T:0.27
Consensus pattern (23 bp):
GGAAAACCAGGAAAATATTTTTC
Found at i:98333214 original size:22 final size:24
Alignment explanation
Indices: 98333189--98333235 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 24
98333179 GAGTGCCAAG
98333189 TGTGTGATAAA-AATA-AAATACA
1 TGTGTGATAAATAATATAAATACA
*
98333211 TGTGTGATAAATAATATACATACA
1 TGTGTGATAAATAATATAAATACA
98333235 T
1 T
98333236 TTGTAATACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.50
23 4 0.18
24 7 0.32
ACGTcount: A:0.49, C:0.06, G:0.13, T:0.32
Consensus pattern (24 bp):
TGTGTGATAAATAATATAAATACA
Found at i:98333222 original size:20 final size:21
Alignment explanation
Indices: 98333189--98333231 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
98333179 GAGTGCCAAG
98333189 TGTGTGATAAAAATAAAATACA
1 TGTGTGAT-AAAATAAAATACA
*
98333211 TGTGTGAT-AAATAATATACA
1 TGTGTGATAAAATAAAATACA
98333231 T
1 T
98333232 ACATTTGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 12 0.60
22 8 0.40
ACGTcount: A:0.49, C:0.05, G:0.14, T:0.33
Consensus pattern (21 bp):
TGTGTGATAAAATAAAATACA
Found at i:98334709 original size:12 final size:12
Alignment explanation
Indices: 98334692--98334716 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98334682 GCCGACTACT
98334692 GTTACTGTTACC
1 GTTACTGTTACC
98334704 GTTACTGTTACC
1 GTTACTGTTACC
98334716 G
1 G
98334717 ATTCGACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:98334816 original size:53 final size:52
Alignment explanation
Indices: 98334755--98334871 Score: 162
Period size: 53 Copynumber: 2.2 Consensus size: 52
98334745 TACTGTTAAC
* * *
98334755 GTTACTGTTACTGTTTCGGATTTGTTCCGATGAGGTTCTCTGTGTACCATACT
1 GTTACTGTTA-TGTTCCGGATTTGTTCCGATGAGGTACTCTATGTACCATACT
* *
98334808 GTTACTGTTATCGTTCCGGATTTGTTCTGATGAGGTACTCTATGTACCGTACT
1 GTTACTGTTAT-GTTCCGGATTTGTTCCGATGAGGTACTCTATGTACCATACT
*
98334861 GCTACTGTTAT
1 GTTACTGTTAT
98334872 TGTTACTGTT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
52 1 0.02
53 56 0.98
ACGTcount: A:0.16, C:0.19, G:0.22, T:0.43
Consensus pattern (52 bp):
GTTACTGTTATGTTCCGGATTTGTTCCGATGAGGTACTCTATGTACCATACT
Found at i:98335057 original size:18 final size:18
Alignment explanation
Indices: 98334997--98335157 Score: 94
Period size: 18 Copynumber: 8.5 Consensus size: 18
98334987 AAAGATCGAC
*
98334997 TGTTACTGAATAATTTAAT
1 TGTTACTGAATAA-TTGAT
*
98335016 TGTTACTGTAT-ATCTGAT
1 TGTTACTGAATAAT-TGAT
* *
98335034 TTTTACTGAATAATTGAC
1 TGTTACTGAATAATTGAT
98335052 TGTTACTGGATAACCGATCAATTGAT
1 TGTTACT-G---A---AT-AATTGAT
* *
98335078 TGATACTGAATAACTGAT
1 TGTTACTGAATAATTGAT
* *
98335096 TATTATTGAATAATTGAT
1 TGTTACTGAATAATTGAT
* *
98335114 TGTTACCGAATAACTG-T
1 TGTTACTGAATAATTGAT
* *
98335131 CTGTTACTGAATAAATAAT
1 -TGTTACTGAATAATTGAT
98335150 TGTT-CTGA
1 TGTTACTGA
98335158 TTGATTAATT
Statistics
Matches: 110, Mismatches: 20, Indels: 26
0.71 0.13 0.17
Matches are distributed among these distances:
17 6 0.05
18 71 0.65
19 16 0.15
22 2 0.02
25 3 0.03
26 12 0.11
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.42
Consensus pattern (18 bp):
TGTTACTGAATAATTGAT
Found at i:98341213 original size:42 final size:42
Alignment explanation
Indices: 98341152--98341278 Score: 177
Period size: 42 Copynumber: 3.0 Consensus size: 42
98341142 CTTCGTTTTC
* *
98341152 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGTCCAACTATGGTCTTACACATATTCACAT-A
* *
98341195 T-GATGCCATAGCCCAACTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGTCCAACTATGGTCTTACACATATTCACATA
* *
98341236 TCGATGCCATAGTCCAGCTATGGTCTTACACA-AATCACATA
1 TCGATGCCATAGTCCAACTATGGTCTTACACATATTCACATA
98341277 TC
1 TC
98341279 TCACTGATGC
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
41 11 0.15
42 63 0.84
43 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGTCCAACTATGGTCTTACACATATTCACATA
Found at i:98341420 original size:31 final size:31
Alignment explanation
Indices: 98341385--98341533 Score: 235
Period size: 31 Copynumber: 4.8 Consensus size: 31
98341375 CTTGTCACTT
* * *
98341385 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCAGAAGCTACCACTTTTCACTAATCAG
* * * *
98341416 GTAGCCGAAACTACCACTTTTCACTGATTAG
1 GTAGCAGAAGCTACCACTTTTCACTAATCAG
98341447 GTAGCAGAAGCTACCACTTTTCACTAATCAG
1 GTAGCAGAAGCTACCACTTTTCACTAATCAG
98341478 GTAGCAGAAGCTACCACTTTTCACTAATCAG
1 GTAGCAGAAGCTACCACTTTTCACTAATCAG
98341509 GTAGCAGAAGCTACCACTTTTCACT
1 GTAGCAGAAGCTACCACTTTTCACT
98341534 TGTCATTTGT
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 111 1.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (31 bp):
GTAGCAGAAGCTACCACTTTTCACTAATCAG
Found at i:98347393 original size:8 final size:8
Alignment explanation
Indices: 98347375--98347419 Score: 65
Period size: 9 Copynumber: 5.5 Consensus size: 8
98347365 GGTTCTTTTA
98347375 TTTTA-TT
1 TTTTACTT
98347382 TTTTACTTT
1 TTTTAC-TT
98347391 TTTTACTT
1 TTTTACTT
98347399 TTTTAACTT
1 TTTT-ACTT
98347408 TTTTACTT
1 TTTTACTT
98347416 TTTT
1 TTTT
98347420 TCTTATATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
7 5 0.14
8 14 0.40
9 16 0.46
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTACTT
Found at i:98347394 original size:9 final size:9
Alignment explanation
Indices: 98347380--98347420 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
98347370 TTTTATTTTA
98347380 TTTTTTACT
1 TTTTTTACT
98347389 TTTTTTACT
1 TTTTTTACT
*
98347398 TTTTTAAC-
1 TTTTTTACT
98347406 TTTTTTACT
1 TTTTTTACT
98347415 TTTTTT
1 TTTTTT
98347421 CTTATATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 7 0.24
9 22 0.76
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTTACT
Found at i:98347402 original size:17 final size:17
Alignment explanation
Indices: 98347375--98347419 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
98347365 GGTTCTTTTA
98347375 TTTTA-TTTTTT-ACTTT
1 TTTTACTTTTTTAAC-TT
98347391 TTTTACTTTTTTAACTT
1 TTTTACTTTTTTAACTT
98347408 TTTTACTTTTTT
1 TTTTACTTTTTT
98347420 TCTTATATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.19
17 20 0.74
18 2 0.07
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTACTTTTTTAACTT
Found at i:98347507 original size:18 final size:17
Alignment explanation
Indices: 98347456--98347503 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
98347446 TTTTTTAAGT
*
98347456 TTTATATTATTTTCTTAA
1 TTTATATTATTAT-TTAA
*
98347474 TTTATTTTACTTATTTAA
1 TTTATATTA-TTATTTAA
98347492 TTTATATTATTA
1 TTTATATTATTA
98347504 ATTTTAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 3 0.12
18 20 0.77
19 3 0.12
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTATATTATTATTTAA
Found at i:98347575 original size:21 final size:20
Alignment explanation
Indices: 98347537--98347577 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
98347527 ATTTAAAATG
98347537 TTTTATAATATTTTTTTAAA
1 TTTTATAATATTTTTTTAAA
98347557 TTTTA-AATTATTATTTTTAAA
1 TTTTATAA-TATT-TTTTTAAA
98347578 AATATTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 9 0.47
21 8 0.42
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTATAATATTTTTTTAAA
Found at i:98347580 original size:23 final size:22
Alignment explanation
Indices: 98347499--98347580 Score: 57
Period size: 21 Copynumber: 3.7 Consensus size: 22
98347489 TAATTTATAT
*
98347499 TATTAATTTTAAAAAATTTGT-AA
1 TATT-ATTTTTAAAAATTT-TAAA
* *
98347522 TA-TATATTTAAAATGTTTTATAA
1 TATTATTTTTAAAA-ATTTTA-AA
98347545 TATT-TTTTT--AAATTTTAAA
1 TATTATTTTTAAAAATTTTAAA
98347564 TTATTATTTTTAAAAAT
1 -TATTATTTTTAAAAAT
98347581 ATTTTTAACT
Statistics
Matches: 46, Mismatches: 5, Indels: 16
0.69 0.07 0.24
Matches are distributed among these distances:
19 2 0.04
20 9 0.20
21 16 0.35
22 4 0.09
23 14 0.30
24 1 0.02
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (22 bp):
TATTATTTTTAAAAATTTTAAA
Found at i:98347641 original size:37 final size:36
Alignment explanation
Indices: 98347600--98347670 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 36
98347590 TTTATATATA
*
98347600 TATTTGTGAAATTAATTATTTATAAATTTTAAAAATG
1 TATTTGTCAAATTAATTATTTA-AAATTTTAAAAATG
* *
98347637 TATTTTTCAAATTAATTTTTTAAAATTTTAAAAA
1 TATTTGTCAAATTAATTATTTAAAATTTTAAAAA
98347671 AATAATTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
36 12 0.39
37 19 0.61
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (36 bp):
TATTTGTCAAATTAATTATTTAAAATTTTAAAAATG
Found at i:98348362 original size:10 final size:9
Alignment explanation
Indices: 98348344--98348441 Score: 54
Period size: 10 Copynumber: 10.4 Consensus size: 9
98348334 TAAAATTTAA
98348344 AAAATATTT
1 AAAATATTT
98348353 AAAATCATTT
1 AAAAT-ATTT
*
98348363 AAAATATTAA
1 AAAATATT-T
98348373 AAAATATTT
1 AAAATATTT
*
98348382 TAAATCATTT
1 AAAAT-ATTT
* * *
98348392 TACATGTTT
1 AAAATATTT
* *
98348401 TAAATGTTTT
1 AAAAT-ATTT
* *
98348411 ATAATATTA
1 AAAATATTT
98348420 AAAATATATT
1 AAAATAT-TT
*
98348430 TAAA-ATTT
1 AAAATATTT
98348438 AAAA
1 AAAA
98348442 AATAATTTAA
Statistics
Matches: 69, Mismatches: 15, Indels: 11
0.73 0.16 0.12
Matches are distributed among these distances:
8 5 0.07
9 29 0.42
10 35 0.51
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (9 bp):
AAAATATTT
Found at i:98348372 original size:29 final size:28
Alignment explanation
Indices: 98348334--98348391 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 28
98348324 AAATTCTATG
98348334 TAAAATTTAAAAAATATTTAAAATCATT
1 TAAAATTTAAAAAATATTTAAAATCATT
*
98348362 TAAAATATTAAAAAATATTTTAAATCATT
1 TAAAAT-TTAAAAAATATTTAAAATCATT
98348391 T
1 T
98348392 TACATGTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (28 bp):
TAAAATTTAAAAAATATTTAAAATCATT
Found at i:98348424 original size:19 final size:19
Alignment explanation
Indices: 98348417--98348453 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
98348407 TTTTATAATA
98348417 TTAAAAATATATTTAAAAT
1 TTAAAAATATATTTAAAAT
98348436 TTAAAAA-ATAATTTAAAA
1 TTAAAAATAT-ATTTAAAA
98348454 ATATATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TTAAAAATATATTTAAAAT
Found at i:98348471 original size:33 final size:33
Alignment explanation
Indices: 98348411--98348502 Score: 98
Period size: 35 Copynumber: 2.7 Consensus size: 33
98348401 TAAATGTTTT
98348411 ATAATATTAAAAATATATTTAAAATTTA-AAAA
1 ATAATATTAAAAATATATTTAAAATTTATAAAA
*
98348443 ATAAT-TTAAAAATATATTTTTAATATTTATAAAAA
1 ATAATATTAAAAATATA--TTTAAAATTTAT-AAAA
* * *
98348478 ATTATATTATAAAACATTTTTAAAA
1 ATAATATTA-AAAATATATTTAAAA
98348503 AATCCATTTC
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
31 11 0.22
32 5 0.10
33 10 0.20
35 14 0.29
36 3 0.06
37 6 0.12
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (33 bp):
ATAATATTAAAAATATATTTAAAATTTATAAAA
Found at i:98351994 original size:30 final size:30
Alignment explanation
Indices: 98351906--98351998 Score: 107
Period size: 30 Copynumber: 3.1 Consensus size: 30
98351896 GGTCAAATGG
* * * *
98351906 ACTCAAACCGCCTATATCCGGGTGATATGA
1 ACTCGAACCACCTATGTCCAGGTGATATGA
* *
98351936 ACTCGAACCACCCATGT-CTGAGTGATATGA
1 ACTCGAACCACCTATGTCCAG-GTGATATGA
*
98351966 ACTCGAACCACCTATGTCCAGGTTATATGA
1 ACTCGAACCACCTATGTCCAGGTGATATGA
98351996 ACT
1 ACT
98351999 GCTCTGGGAC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
29 2 0.04
30 49 0.92
31 2 0.04
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (30 bp):
ACTCGAACCACCTATGTCCAGGTGATATGA
Found at i:98354990 original size:18 final size:18
Alignment explanation
Indices: 98354947--98354994 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 18
98354937 TAATAAAATA
*
98354947 TATATTT-AATATATATT
1 TATATTTAAATTTATATT
*
98354964 T-T-TTAAAATTTATATT
1 TATATTTAAATTTATATT
98354980 TATATTTAAATTTAT
1 TATATTTAAATTTAT
98354995 TAATAGTCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 2 0.08
16 11 0.44
17 2 0.08
18 10 0.40
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TATATTTAAATTTATATT
Found at i:98355122 original size:31 final size:31
Alignment explanation
Indices: 98355087--98355146 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
98355077 TATCTAATGT
98355087 TAAAAAAAAT-TTAAAATAATATTTAAAATTG
1 TAAAAAAAATATTAAAA-AATATTTAAAATTG
* * *
98355118 TAAAAAATATATTATAAAATATTTTAAAT
1 TAAAAAAAATATTAAAAAATATTTAAAAT
98355147 ATACATTACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 20 0.80
32 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (31 bp):
TAAAAAAAATATTAAAAAATATTTAAAATTG
Found at i:98355169 original size:23 final size:24
Alignment explanation
Indices: 98355118--98355169 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
98355108 TTTAAAATTG
* * *
98355118 TAAAAAATATATTATAAAATATTT
1 TAAAATATACATTACAAAATATTT
98355142 T-AAATATACATTACAAAAT-TTT
1 TAAAATATACATTACAAAATATTT
98355164 TAAAAT
1 TAAAAT
98355170 TAATAATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 4 0.17
23 19 0.79
24 1 0.04
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (24 bp):
TAAAATATACATTACAAAATATTT
Found at i:98355509 original size:28 final size:28
Alignment explanation
Indices: 98355477--98355546 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 28
98355467 AAAAGAAAAA
98355477 TATATTTAATATTTATAAAA-TAATATT
1 TATATTTAATATTTATAAAATTAATATT
* * * *
98355504 TA-ATATATATTTTTTTAAAATTTATATT
1 TATATTTA-ATATTTATAAAATTAATATT
98355532 TATATTTAA-ATTTAT
1 TATATTTAATATTTAT
98355547 TAATAGTCAC
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
26 4 0.12
27 16 0.48
28 9 0.27
29 4 0.12
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (28 bp):
TATATTTAATATTTATAAAATTAATATT
Found at i:98355549 original size:28 final size:27
Alignment explanation
Indices: 98355477--98355549 Score: 69
Period size: 28 Copynumber: 2.7 Consensus size: 27
98355467 AAAAGAAAAA
98355477 TATATTTAATATTTA-TAAAATAATATT
1 TATATTTAA-ATTTATTAAAATAATATT
* * * *
98355504 TA-ATATATATTTTTTTAAAATTTATATT
1 TATATTTA-AATTTATTAAAA-TAATATT
98355532 TATATTTAAATTTATTAA
1 TATATTTAAATTTATTAA
98355550 TAGTCACATC
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
26 7 0.20
27 8 0.23
28 16 0.46
29 4 0.11
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (27 bp):
TATATTTAAATTTATTAAAATAATATT
Found at i:98355748 original size:13 final size:13
Alignment explanation
Indices: 98355718--98355763 Score: 58
Period size: 13 Copynumber: 3.4 Consensus size: 13
98355708 TCAAATATTA
98355718 TAAAACTAATAATTT
1 TAAAACTAAT--TTT
98355733 TAAAACTAATTTT
1 TAAAACTAATTTT
98355746 TAAAA-TACATTTT
1 TAAAACTA-ATTTT
98355759 TAAAA
1 TAAAA
98355764 TTTATAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 2 0.07
13 18 0.60
15 10 0.33
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (13 bp):
TAAAACTAATTTT
Found at i:98355837 original size:21 final size:21
Alignment explanation
Indices: 98355812--98355898 Score: 63
Period size: 22 Copynumber: 4.0 Consensus size: 21
98355802 TAAAAAATAT
98355812 TTTTAAAAATAATAATTAAAA
1 TTTTAAAAATAATAATTAAAA
*
98355833 TTTTAAAAA-AATATTATAAAACA
1 TTTTAAAAATAATA--ATTAAA-A
*
98355856 TTTTAAATAT-AT-ATTACAAA
1 TTTTAAAAATAATAATTA-AAA
*
98355876 TTTTTTAAAATTAATAATATAAA
1 --TTTTAAAAATAATAAT-TAAA
98355899 TTAAATAAGT
Statistics
Matches: 51, Mismatches: 5, Indels: 17
0.70 0.07 0.23
Matches are distributed among these distances:
20 8 0.16
21 11 0.22
22 13 0.25
23 13 0.25
24 4 0.08
25 2 0.04
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
TTTTAAAAATAATAATTAAAA
Found at i:98355899 original size:23 final size:22
Alignment explanation
Indices: 98355810--98355900 Score: 62
Period size: 23 Copynumber: 4.1 Consensus size: 22
98355800 GTTAAAAAAT
*
98355810 ATTTTTAAAAATAATAAT-TAA
1 ATTTTTTAAAATAATAATATAA
* * *
98355831 A-ATTTTAAAAAAATATTATAAA
1 ATTTTTTAAAATAATAATAT-AA
** * *
98355853 ACATTTT-AAATATATATTACAA
1 ATTTTTTAAAATA-ATAATATAA
98355875 ATTTTTTAAAATTAATAATATAA
1 ATTTTTTAAAA-TAATAATATAA
98355898 ATT
1 ATT
98355901 AAATAAGTAA
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
20 12 0.22
21 2 0.04
22 14 0.26
23 24 0.44
24 2 0.04
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTTTTTAAAATAATAATATAA
Found at i:98355933 original size:18 final size:18
Alignment explanation
Indices: 98355883--98355934 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
98355873 AAATTTTTTA
*
98355883 AAATTAATAATATAAATT
1 AAATAAATAATATAAATT
* *
98355901 AAATAAGTAAAATAAATT
1 AAATAAATAATATAAATT
98355919 AAGA-AAATAATATAAA
1 AA-ATAAATAATATAAA
98355935 ACTTTAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (18 bp):
AAATAAATAATATAAATT
Found at i:98355982 original size:14 final size:13
Alignment explanation
Indices: 98355959--98356026 Score: 50
Period size: 14 Copynumber: 5.2 Consensus size: 13
98355949 AAAATCTAAA
*
98355959 AAAGAGAAAAAAT
1 AAAGAAAAAAAAT
*
98355972 ATAAGAAAAAAAGT
1 A-AAGAAAAAAAAT
**
98355986 AAA-AAAGTAAA-
1 AAAGAAAAAAAAT
98355997 AAAGTAAAAAAAAT
1 AAAG-AAAAAAAAT
*
98356011 AAATAAAAAAATAT
1 AAAGAAAAAAA-AT
98356025 AA
1 AA
98356027 GAATTTGACA
Statistics
Matches: 42, Mismatches: 8, Indels: 9
0.71 0.14 0.15
Matches are distributed among these distances:
11 3 0.07
12 5 0.12
13 16 0.38
14 18 0.43
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.13
Consensus pattern (13 bp):
AAAGAAAAAAAAT
Found at i:98355990 original size:38 final size:38
Alignment explanation
Indices: 98355940--98356021 Score: 103
Period size: 39 Copynumber: 2.1 Consensus size: 38
98355930 ATAAAACTTT
* *
98355940 AAAAAGAAAAAAATCTAAAAAAG-AGAAAAAATATAAGAA
1 AAAAAGTAAAAAA-CTAAAAAAGTAAAAAAAATA-AAGAA
* *
98355979 AAAAAGTAAAAAAGTAAAAAAGTAAAAAAAATAAATAA
1 AAAAAGTAAAAAACTAAAAAAGTAAAAAAAATAAAGAA
98356017 AAAAA
1 AAAAA
98356022 TATAAGAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
38 17 0.45
39 21 0.55
ACGTcount: A:0.79, C:0.01, G:0.09, T:0.11
Consensus pattern (38 bp):
AAAAAGTAAAAAACTAAAAAAGTAAAAAAAATAAAGAA
Found at i:98355997 original size:7 final size:8
Alignment explanation
Indices: 98355978--98356007 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
98355968 AAATATAAGA
98355978 AAAAAAGT
1 AAAAAAGT
98355986 AAAAAAGT
1 AAAAAAGT
98355994 AAAAAAGT
1 AAAAAAGT
98356002 AAAAAA
1 AAAAAA
98356008 AATAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (8 bp):
AAAAAAGT
Found at i:98355999 original size:30 final size:29
Alignment explanation
Indices: 98355942--98356020 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 29
98355932 AAAACTTTAA
*
98355942 AAAGAAAAAAATCTAAAAAAGAGAAAAAAT
1 AAAGAAAAAAA-ATAAAAAAGAGAAAAAAT
* *
98355972 ATAAGAAAAAAAGTAAAAAAGTA-AAAAAGT
1 A-AAGAAAAAAAATAAAAAAG-AGAAAAAAT
98356002 AAA-AAAAATAAATAAAAAA
1 AAAGAAAAA-AAATAAAAAA
98356021 ATATAAGAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
28 5 0.12
29 11 0.26
30 16 0.37
31 11 0.26
ACGTcount: A:0.78, C:0.01, G:0.09, T:0.11
Consensus pattern (29 bp):
AAAGAAAAAAAATAAAAAAGAGAAAAAAT
Found at i:98371328 original size:18 final size:20
Alignment explanation
Indices: 98371268--98371329 Score: 60
Period size: 19 Copynumber: 3.2 Consensus size: 20
98371258 ATTTATTTTT
*
98371268 TTAAATATTATTAAAAT-TC
1 TTAAATATAATTAAAATATC
* *
98371287 ATAAATATAATTAAAA-ATAG
1 TTAAATATAATTAAAATAT-C
98371307 TTAAA-A-AATTAAAATATC
1 TTAAATATAATTAAAATATC
98371325 TTAAA
1 TTAAA
98371330 CCGTAAGTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
18 13 0.37
19 18 0.51
20 4 0.11
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (20 bp):
TTAAATATAATTAAAATATC
Found at i:98374428 original size:3 final size:3
Alignment explanation
Indices: 98374420--98374448 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
98374410 GGCGCCCCAA
98374420 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
98374449 GACAATATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (3 bp):
CAT
Found at i:98378607 original size:31 final size:31
Alignment explanation
Indices: 98378583--98378646 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
98378573 TAAAAGAGTA
98378583 AAACAACATAATTAAAAAGATTAAAAACAAC
1 AAACAACATAATTAAAAAGATTAAAAACAAC
98378614 AAACAACATAATTAAAAAGATTAAAAACAAC
1 AAACAACATAATTAAAAAGATTAAAAACAAC
98378645 AA
1 AA
98378647 TGTTCCTGGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.69, C:0.12, G:0.03, T:0.16
Consensus pattern (31 bp):
AAACAACATAATTAAAAAGATTAAAAACAAC
Found at i:98379651 original size:22 final size:21
Alignment explanation
Indices: 98379621--98379699 Score: 88
Period size: 22 Copynumber: 3.7 Consensus size: 21
98379611 TCCCTAAATA
98379621 ATTATACAGAGAATTTCAAACG
1 ATTATACAGA-AATTTCAAACG
* *
98379643 ATTACACAGAAATTT-AAACA
1 ATTATACAGAAATTTCAAACG
* *
98379663 ATTATACAAAGAATTTCATACG
1 ATTATACAGA-AATTTCAAACG
*
98379685 ATTAGACAGAAATTT
1 ATTATACAGAAATTT
98379700 AAGAAGGTTG
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
20 12 0.26
21 15 0.32
22 20 0.43
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (21 bp):
ATTATACAGAAATTTCAAACG
Found at i:98379653 original size:20 final size:20
Alignment explanation
Indices: 98379625--98379695 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
98379615 TAAATAATTA
*
98379625 TACAGAGAATTTCAAACGAT
1 TACACAGAATTTCAAACGAT
*
98379645 TACACAGAAATTT-AAACAATT
1 TACACAG-AATTTCAAACGA-T
* *
98379666 ATACAAAGAATTTCATACGAT
1 -TACACAGAATTTCAAACGAT
*
98379687 TAGACAGAA
1 TACACAGAA
98379696 ATTTAAGAAG
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
20 18 0.45
21 12 0.30
22 10 0.25
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.25
Consensus pattern (20 bp):
TACACAGAATTTCAAACGAT
Found at i:98379679 original size:42 final size:42
Alignment explanation
Indices: 98379615--98379701 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 42
98379605 TCCATCTCCC
* *
98379615 TAAATAATTATACAGAGAATTTCAAACGATTACACAGAAATT
1 TAAACAATTATACAAAGAATTTCAAACGATTACACAGAAATT
* *
98379657 TAAACAATTATACAAAGAATTTCATACGATTAGACAGAAATT
1 TAAACAATTATACAAAGAATTTCAAACGATTACACAGAAATT
98379699 TAA
1 TAA
98379702 GAAGGTTGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.51, C:0.11, G:0.09, T:0.29
Consensus pattern (42 bp):
TAAACAATTATACAAAGAATTTCAAACGATTACACAGAAATT
Found at i:98381512 original size:13 final size:13
Alignment explanation
Indices: 98381494--98381557 Score: 76
Period size: 13 Copynumber: 4.9 Consensus size: 13
98381484 AGTTTGGTAA
98381494 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
98381507 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
98381520 TGC-TGTGAAAAAG
1 TGCTTTTG-AAAAG
* * *
98381533 TGTTTTTTAGAAG
1 TGCTTTTGAAAAG
98381546 TGCTTTTGAAAA
1 TGCTTTTGAAAA
98381558 ATTTGATTTA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
12 3 0.07
13 36 0.88
14 2 0.05
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:98397427 original size:29 final size:29
Alignment explanation
Indices: 98397374--98397429 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
98397364 TAACTATTTG
* *
98397374 AACTAATTAATTACATCATACAAATATTA
1 AACTAATTAATAACATCATAAAAATATTA
98397403 AACTAATTAATAACA-CTATAAAAATAT
1 AACTAATTAATAACATC-ATAAAAATAT
98397430 AAAAAATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 23 0.96
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.32
Consensus pattern (29 bp):
AACTAATTAATAACATCATAAAAATATTA
Found at i:98397455 original size:6 final size:6
Alignment explanation
Indices: 98397446--98397478 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
98397436 TTAGAAATTA
*
98397446 AAATAT AAATAT AAATAT AAATAT AAATTT AAA
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAA
98397479 GAAAAAAGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AAATAT
Found at i:98406735 original size:26 final size:24
Alignment explanation
Indices: 98406698--98406751 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 24
98406688 CGAATTTCAT
*
98406698 ATATTTTTAT-AAAATAATAATATA
1 ATATTTTTATAAAAATAA-AATAAA
98406722 ATATTTTATCATAAAAATAAAATAAA
1 ATATTTT-T-ATAAAAATAAAATAAA
98406748 ATAT
1 ATAT
98406752 CATGAAAGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 7 0.27
25 1 0.04
26 11 0.42
27 7 0.27
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
ATATTTTTATAAAAATAAAATAAA
Found at i:98413836 original size:52 final size:50
Alignment explanation
Indices: 98413773--98413963 Score: 165
Period size: 52 Copynumber: 3.8 Consensus size: 50
98413763 GAAAAAGATG
98413773 TGATATATGTTCCTGTATAAGACCATAGCTGGGCTATGGCATTAGTGCAATA
1 TGATATATGTTCC-GTATAAGACCATAGCTGGGCTATGGCA-TAGTGCAATA
* * * ** *
98413825 TGATATGTGTTCCCGTATAAGACCATAACTGGGCTATGGCATCGGTGTGATG
1 TGATATATGTT-CCGTATAAGACCATAGCTGGGCTATGGCAT-AGTGCAATA
* * * *
98413877 TGATAACATGATTCCGTATAAGACCATATCTGGGATATGGC--A-T-CAGTA
1 TGAT-ATATG-TTCCGTATAAGACCATAGCTGGGCTATGGCATAGTGCAATA
* * * * *
98413925 TGATATGTGATCCGTGTAAGACCATGGCGGGGCTATGGC
1 TGATATATGTTCCGTATAAGACCATAGCTGGGCTATGGC
98413964 TTTGGTGTGT
Statistics
Matches: 112, Mismatches: 23, Indels: 14
0.75 0.15 0.09
Matches are distributed among these distances:
46 24 0.21
47 3 0.03
48 5 0.04
49 1 0.01
51 1 0.01
52 45 0.40
53 31 0.28
54 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
TGATATATGTTCCGTATAAGACCATAGCTGGGCTATGGCATAGTGCAATA
Found at i:98413910 original size:53 final size:51
Alignment explanation
Indices: 98413769--98413923 Score: 184
Period size: 52 Copynumber: 3.0 Consensus size: 51
98413759 TGACGAAAAA
* *
98413769 GATGTGATATATGTTCCTGTATAAGACCATAGCTGGGCTATGGCATTAGTGC
1 GATGTGATATATGTTCC-GTATAAGACCATAACTGGGCTATGGCATCAGTGC
* * * * *
98413821 AATATGATATGTGTTCCCGTATAAGACCATAACTGGGCTATGGCATCGGTGT
1 GATGTGATATATGTT-CCGTATAAGACCATAACTGGGCTATGGCATCAGTGC
* * *
98413873 GATGTGATAACATGATTCCGTATAAGACCATATCTGGGATATGGCATCAGT
1 GATGTGAT-ATATG-TTCCGTATAAGACCATAACTGGGCTATGGCATCAGT
98413924 ATGATATGTG
Statistics
Matches: 86, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
52 48 0.56
53 36 0.42
54 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (51 bp):
GATGTGATATATGTTCCGTATAAGACCATAACTGGGCTATGGCATCAGTGC
Found at i:98422632 original size:14 final size:14
Alignment explanation
Indices: 98422613--98422640 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
98422603 ATTTGATAAA
98422613 TCTGTATCTGATTT
1 TCTGTATCTGATTT
98422627 TCTGTATCTGATTT
1 TCTGTATCTGATTT
98422641 GGGGTGGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57
Consensus pattern (14 bp):
TCTGTATCTGATTT
Found at i:98423508 original size:14 final size:15
Alignment explanation
Indices: 98423484--98423512 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
98423474 AAATTAAATT
98423484 TTTATTTTTTTATTA
1 TTTATTTTTTTATTA
98423499 TTTA-TTTTTTATTA
1 TTTATTTTTTTATTA
98423513 AAATATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTATTTTTTTATTA
Found at i:98425343 original size:10 final size:10
Alignment explanation
Indices: 98425328--98425371 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
98425318 GGGCTTACAC
98425328 CAAAATAAAA
1 CAAAATAAAA
98425338 CAAAATAAAAA
1 CAAAAT-AAAA
98425349 CAAAAT-AAA
1 CAAAATAAAA
*
98425358 -AAAATATAA
1 CAAAATAAAA
98425367 CAAAA
1 CAAAA
98425372 CCAAAATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
8 5 0.17
9 5 0.17
10 10 0.33
11 10 0.33
ACGTcount: A:0.80, C:0.09, G:0.00, T:0.11
Consensus pattern (10 bp):
CAAAATAAAA
Found at i:98425350 original size:11 final size:11
Alignment explanation
Indices: 98425328--98425359 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
98425318 GGGCTTACAC
98425328 CAAAAT-AAAA
1 CAAAATAAAAA
98425338 CAAAATAAAAA
1 CAAAATAAAAA
98425349 CAAAATAAAAA
1 CAAAATAAAAA
98425360 AATATAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.29
11 15 0.71
ACGTcount: A:0.81, C:0.09, G:0.00, T:0.09
Consensus pattern (11 bp):
CAAAATAAAAA
Found at i:98432211 original size:28 final size:30
Alignment explanation
Indices: 98432170--98432231 Score: 92
Period size: 28 Copynumber: 2.1 Consensus size: 30
98432160 AGACCTTGAA
*
98432170 AAAAATAATCAAAAATTAAAAAAGA-AATT
1 AAAAATAATCAAAAATTAAAAAAGAGAATG
*
98432199 AAAAA-AATTAAAAATTAAAAAAGAGAATG
1 AAAAATAATCAAAAATTAAAAAAGAGAATG
98432228 AAAA
1 AAAA
98432232 GGAGAGGCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 18 0.60
29 12 0.40
ACGTcount: A:0.74, C:0.02, G:0.06, T:0.18
Consensus pattern (30 bp):
AAAAATAATCAAAAATTAAAAAAGAGAATG
Found at i:98433385 original size:66 final size:64
Alignment explanation
Indices: 98433308--98433561 Score: 316
Period size: 64 Copynumber: 3.9 Consensus size: 64
98433298 TCATTCATAA
* * * *
98433308 CACATTTAGTTAGATGCATTTGACTCATTTCGATCATAGTATCCTAATTATTTGACATCAGCAT
1 CACATCTAGTTAGATGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * *
98433372 AACACATCCAGTTAGAAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCA
1 --CACATCTAGTTAGATGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCA
98433437 T
64 T
* *
98433438 CACATTTAGTTA-AGTGCATTTGATTCATGTT-GATCATAGCATTCTAATTATTTGACATAAGCA
1 CACATCTAGTTAGA-TGCATTTGATTCAT-TTCGATCATAGCATCCTAATTATTTGACATAAGCA
98433501 T
64 T
* * ** *
98433502 CATATCTAGTTAAGA-GCATTTGATTCATTTTGATCATAAAATCCTAATTATTTGGCATAA
1 CACATCTAGTT-AGATGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAA
98433562 ACATGATACA
Statistics
Matches: 165, Mismatches: 18, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
63 3 0.02
64 101 0.61
65 3 0.02
66 58 0.35
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGATGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:98434264 original size:146 final size:145
Alignment explanation
Indices: 98434001--98434281 Score: 397
Period size: 146 Copynumber: 1.9 Consensus size: 145
98433991 GCAGATGGTG
* * * *
98434001 AATCTTATCTTCATGTATCAGCAATGGAGTAGATTTTACCACCAATATTATCTCTCTGAGGTAGC
1 AATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAACCACCAACATTATCTCTCTGAGGTAGC
* * *
98434066 AAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTGAGGCAGCAAGAAAGCAGACTGA-AGATTG
66 AAGAGAGCAGGTTAAAGAATGAGTCTTATCTTCCTAAGGCAGCAAGAAAGCAGACTGAGA-ATTG
98434130 AAGATTGGAAAAGGCA
130 AAGATTGGAAAAGGCA
* *
98434146 AATCTTATCTCCATGTATC-GACAATGGAGCAGATTTAAGCC-CCAAGCCTTATTTCTCTGAGGT
1 AATCTTATCTCCATGTATCAG-CAATGGAGCAGATTTAA-CCACCAA-CATTATCTCTCTGAGGT
* * *
98434209 AGCAAGAGAGCAGGTTAAAGAATGAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGGGAAT
63 AGCAAGAGAGCAGGTTAAAGAATGAGTCTTATCTTCCTAAGGCAGCAAGAAAGCAGACTGAGAAT
98434274 TGAAGATT
128 TGAAGATT
98434282 CTATCTCCCT
Statistics
Matches: 120, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
144 1 0.01
145 37 0.31
146 81 0.68
147 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.27
Consensus pattern (145 bp):
AATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAACCACCAACATTATCTCTCTGAGGTAGC
AAGAGAGCAGGTTAAAGAATGAGTCTTATCTTCCTAAGGCAGCAAGAAAGCAGACTGAGAATTGA
AGATTGGAAAAGGCA
Found at i:98434496 original size:181 final size:181
Alignment explanation
Indices: 98434146--98434824 Score: 958
Period size: 181 Copynumber: 3.8 Consensus size: 181
98434136 GGAAAAGGCA
* *
98434146 AATCTTATCTCCATGTATCGACAATGGAGCAGATTTAAGCCCCAAGCCTTATTTCTCTGAGGTAG
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAG
* * *
98434211 CAAGAGAGCAGGTTAAAGA--ATGAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGGGAAT
66 CAAGAGAGCAGGTTGAAGATGAT-AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGGAAAT
* * *
98434274 TGAAGATTCTATCTCCCTGAAGTTGCAGCGGAGTAGATCTTCACAGATGGCT
130 TGAAGATTTTATCTCCCTAAAGTTGCAGCGGAGTAGATCTTCGCAGATGGCT
*** * *
98434326 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCTTTAAGCCTTATTTCTCTGAGGAAG
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAG
* *
98434391 CAAGAGAGCAGGTTGAAGATGATAGTATTATCTTCCTGAGGTAGCAATGAAGCAGACTGGAAATT
66 CAAGAGAGCAGGTTGAAGATGATAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGGAAATT
98434456 GAAGATTTTATCTCCCTAAAGTTGCAGCGGAGTAGATCTTCGCAGATGGCT
131 GAAGATTTTATCTCCCTAAAGTTGCAGCGGAGTAGATCTTCGCAGATGGCT
* * *
98434507 AATCTTATCTCCATGTATTGGCACTGGGGCAGATTTAAGCCACC-AGCCTTATCTCTCTGAGGTA
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCC-CCAAGCCTTATCTCTCTGAGGTA
* * * *
98434571 GCAAGAGAGCAGGTTGTATATGATATTCTTATCTTCCTGAGGTAGCAAGGAAGCAGA-TTGAGAA
65 GCAAGAGAGCAGGTTGAAGATGATAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGGA-AA
* * *
98434635 TTGAATATTTTATCTCCCTGAAA-TTACAGCGGAGCAGATCTTCGCAGATGGCT
129 TTGAAGATTTTATCTCCCT-AAAGTTGCAGCGGAGTAGATCTTCGCAGATGGCT
* * * *
98434688 AATCTTATCTCCATGTATTGGCAATGGGGCAGATTTAAGCCCCAAGCATTATCTCTCTAAGGTAG
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAG
* * * *
98434753 CAAGAGAGCAGGTTGAAAATTGA-AGTCTTATCTTCCTGAAGTAGTAAGGAAGCAAACT-GAAGA
66 CAAGAGAGCAGGTTGAAGA-TGATAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGGAA-A
98434816 TTGAAGATT
129 TTGAAGATT
98434825 GAAAGAGGCG
Statistics
Matches: 450, Mismatches: 40, Indels: 17
0.89 0.08 0.03
Matches are distributed among these distances:
180 84 0.19
181 357 0.79
182 9 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (181 bp):
AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAG
CAAGAGAGCAGGTTGAAGATGATAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGGAAATT
GAAGATTTTATCTCCCTAAAGTTGCAGCGGAGTAGATCTTCGCAGATGGCT
Found at i:98435222 original size:18 final size:17
Alignment explanation
Indices: 98435199--98435237 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
98435189 GGCTTACACG
98435199 AAAATAAAACAAAAAAAC
1 AAAATAAAA-AAAAAAAC
*
98435217 AAAATAAAAAAAATAAC
1 AAAATAAAAAAAAAAAC
98435234 AAAA
1 AAAA
98435238 CCAAAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.85, C:0.08, G:0.00, T:0.08
Consensus pattern (17 bp):
AAAATAAAAAAAAAAAC
Found at i:98438342 original size:14 final size:14
Alignment explanation
Indices: 98438323--98438351 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
98438313 ATTGTGCATC
98438323 ACAATGATAGTAAA
1 ACAATGATAGTAAA
98438337 ACAATGATAGTAAA
1 ACAATGATAGTAAA
98438351 A
1 A
98438352 TATAGTGTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.07, G:0.14, T:0.21
Consensus pattern (14 bp):
ACAATGATAGTAAA
Found at i:98441577 original size:86 final size:86
Alignment explanation
Indices: 98441464--98441638 Score: 262
Period size: 86 Copynumber: 2.0 Consensus size: 86
98441454 AAAATAATAT
* ** *
98441464 TAAAATCAGATATGAAAATATTGTAAACCTG-AATTGATAACTGACATGTTGATTTGAGATTCTT
1 TAAAATCAGACATGAAAATATCATAAA-CTGAAATTGATAACTGACATGCTGATTTGAGATTCTT
98441528 ATGCACATTCTAAGGACTAAAA
65 ATGCACATTCTAAGGACTAAAA
* * *
98441550 TAAAATCAGACATGACAATATCATAAACTGAAATTGATAAGTGGCATGCTGATTTGAGATTCTTA
1 TAAAATCAGACATGAAAATATCATAAACTGAAATTGATAACTGACATGCTGATTTGAGATTCTTA
*
98441615 TGCACATTTTAAGGACTAAAA
66 TGCACATTCTAAGGACTAAAA
98441636 TAA
1 TAA
98441639 TTTTTTTTCT
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
85 3 0.04
86 77 0.96
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.31
Consensus pattern (86 bp):
TAAAATCAGACATGAAAATATCATAAACTGAAATTGATAACTGACATGCTGATTTGAGATTCTTA
TGCACATTCTAAGGACTAAAA
Found at i:98441741 original size:27 final size:26
Alignment explanation
Indices: 98441675--98441742 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 26
98441665 TGTATAAGTA
98441675 TTAAAATGATATATTTAATTTTTGTAT
1 TTAAAAT-ATATATTTAATTTTTGTAT
*
98441702 TT---ATATATTTTTAATATTTT-TAT
1 TTAAAATATATATTTAAT-TTTTGTAT
98441725 GTTAAAATATATATTTAA
1 -TTAAAATATATATTTAA
98441743 AAAAAGAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
23 13 0.38
24 8 0.24
27 13 0.38
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (26 bp):
TTAAAATATATATTTAATTTTTGTAT
Found at i:98443247 original size:19 final size:19
Alignment explanation
Indices: 98443223--98443269 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
98443213 ATGAAATTTT
*
98443223 AAAATATAACAAATAAAAA
1 AAAATAAAACAAATAAAAA
*
98443242 AAAATAAAACAAATTAAAA
1 AAAATAAAACAAATAAAAA
*
98443261 TAAATAAAA
1 AAAATAAAA
98443270 TGTGACAAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (19 bp):
AAAATAAAACAAATAAAAA
Found at i:98443845 original size:20 final size:22
Alignment explanation
Indices: 98443816--98443855 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
98443806 AATGAATAAA
98443816 TTAAAATG-AA-TAAAAAAATT
1 TTAAAATGAAATTAAAAAAATT
*
98443836 TTAAATTGAAATTAAAAAAA
1 TTAAAATGAAATTAAAAAAA
98443856 ACTCAATTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 2 0.12
22 8 0.47
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (22 bp):
TTAAAATGAAATTAAAAAAATT
Found at i:98444627 original size:18 final size:17
Alignment explanation
Indices: 98444576--98444627 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 17
98444566 ATGAATAACC
*
98444576 AAAGAAAAAAAA-AAG-
1 AAAGAAAAAAAATCAGA
*
98444591 AAAGAAAAACAATCAGA
1 AAAGAAAAAAAATCAGA
*
98444608 AAAGAAAACAAAATCTGA
1 AAAGAAAA-AAAATCAGA
98444626 AA
1 AA
98444628 TCACCTTCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 11 0.37
16 2 0.07
17 8 0.27
18 9 0.30
ACGTcount: A:0.75, C:0.08, G:0.12, T:0.06
Consensus pattern (17 bp):
AAAGAAAAAAAATCAGA
Found at i:98446777 original size:12 final size:12
Alignment explanation
Indices: 98446760--98446784 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98446750 TTCATCTCTC
98446760 GCCACTACTATT
1 GCCACTACTATT
98446772 GCCACTACTATT
1 GCCACTACTATT
98446784 G
1 G
98446785 ATGCGGCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.12, T:0.32
Consensus pattern (12 bp):
GCCACTACTATT
Found at i:98449019 original size:106 final size:106
Alignment explanation
Indices: 98448852--98449047 Score: 392
Period size: 106 Copynumber: 1.8 Consensus size: 106
98448842 AGATTAGTTG
98448852 AGAAAGAGAGAGGGAGTGGAGGCATTTGGCTTCATATCAAAGGTGTGGGGCCAGAAGAAAGAAAT
1 AGAAAGAGAGAGGGAGTGGAGGCATTTGGCTTCATATCAAAGGTGTGGGGCCAGAAGAAAGAAAT
98448917 CAAGAGAAGAATATGGCCAATCCAAAATATAGTAACAGGTA
66 CAAGAGAAGAATATGGCCAATCCAAAATATAGTAACAGGTA
98448958 AGAAAGAGAGAGGGAGTGGAGGCATTTGGCTTCATATCAAAGGTGTGGGGCCAGAAGAAAGAAAT
1 AGAAAGAGAGAGGGAGTGGAGGCATTTGGCTTCATATCAAAGGTGTGGGGCCAGAAGAAAGAAAT
98449023 CAAGAGAAGAATATGGCCAATCCAA
66 CAAGAGAAGAATATGGCCAATCCAA
98449048 TCCATTCACC
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 90 1.00
ACGTcount: A:0.41, C:0.12, G:0.31, T:0.16
Consensus pattern (106 bp):
AGAAAGAGAGAGGGAGTGGAGGCATTTGGCTTCATATCAAAGGTGTGGGGCCAGAAGAAAGAAAT
CAAGAGAAGAATATGGCCAATCCAAAATATAGTAACAGGTA
Found at i:98457073 original size:14 final size:14
Alignment explanation
Indices: 98457056--98457083 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
98457046 AGTAAAATAT
98457056 TTTCTAGAAAATGA
1 TTTCTAGAAAATGA
98457070 TTTCTAGAAAATGA
1 TTTCTAGAAAATGA
98457084 CTTACTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (14 bp):
TTTCTAGAAAATGA
Done.