Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 305 of 325
Found at i:99005557 original size:21 final size:20
Alignment explanation
Indices: 99005527--99005565 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
99005517 AAATACTAAA
99005527 AAATTTATTA-AGAAAATAAT
1 AAATTTATTATA-AAAATAAT
99005547 AAATATTATTATAAAAATA
1 AAAT-TTATTATAAAAATA
99005566 TTTTTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 12 0.71
22 1 0.06
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (20 bp):
AAATTTATTATAAAAATAAT
Found at i:99012697 original size:22 final size:21
Alignment explanation
Indices: 99012663--99012703 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
99012653 TATTAAGTTT
* *
99012663 TTAATTGAGTTTATGTTATAAG
1 TTAAGTGACTTTAT-TTATAAG
99012685 TTAAGTGACTTTATTTATA
1 TTAAGTGACTTTATTTATA
99012704 TTTTGAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.32, C:0.02, G:0.15, T:0.51
Consensus pattern (21 bp):
TTAAGTGACTTTATTTATAAG
Found at i:99012848 original size:17 final size:17
Alignment explanation
Indices: 99012798--99012848 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
99012788 TTGAGATTTG
*
99012798 AGATTTTATAATTTTCTA
1 AGATTTTAT-ATTTTTTA
* *
99012816 AAATTTAATATATTTTT-
1 AGATTTTATAT-TTTTTA
99012833 AGATTTTATATTTTTT
1 AGATTTTATATTTTTT
99012849 GTAATTTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
16 5 0.19
17 11 0.41
18 11 0.41
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (17 bp):
AGATTTTATATTTTTTA
Found at i:99017678 original size:19 final size:17
Alignment explanation
Indices: 99017650--99017692 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
99017640 CAGTCAATTA
99017650 CTCA-TTTGTTTGTATTGT
1 CTCATTTTGTTTG-ATT-T
99017668 CTCATTTTGTTTGATTT
1 CTCATTTTGTTTGATTT
*
99017685 CTTATTTT
1 CTCATTTT
99017693 CAAGCATAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 8 0.35
18 7 0.30
19 8 0.35
ACGTcount: A:0.12, C:0.12, G:0.12, T:0.65
Consensus pattern (17 bp):
CTCATTTTGTTTGATTT
Found at i:99023305 original size:3 final size:3
Alignment explanation
Indices: 99023297--99023324 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
99023287 TGTTTGATTT
99023297 ATC ATC ATC ATC ATC ATC ATC ATC ATC A
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC A
99023325 CTTTCTCTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (3 bp):
ATC
Found at i:99024804 original size:73 final size:72
Alignment explanation
Indices: 99024694--99024878 Score: 268
Period size: 73 Copynumber: 2.6 Consensus size: 72
99024684 AACAAATTTT
* *
99024694 ATATCC-AAAATCAAACATAAACCACTATTGATAAAACTAGATTACA-AATAAA-AATGTATAAC
1 ATATCCAAAAATCAAACATAAACAACTATTGATAAAACTAGATTACACAA-AAATAA-GTAGAAC
99024756 ATAAATTCA
64 ATAAATTCA
*
99024765 ATATCCAAAAACCAAACATAAACAAACTATTGATAAAACTAGATTACACAAAAATAAGTAGAACA
1 ATATCCAAAAATCAAACATAAAC-AACTATTGATAAAACTAGATTACACAAAAATAAGTAGAACA
**
99024830 TAAATTTG
65 TAAATTCA
*
99024838 ATATCCAAAAATCAAATATAAACAACTATTGATAAAACTAG
1 ATATCCAAAAATCAAACATAAACAACTATTGATAAAACTAG
99024879 TTTAGCATTG
Statistics
Matches: 103, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
71 6 0.06
72 33 0.32
73 60 0.58
74 4 0.04
ACGTcount: A:0.56, C:0.15, G:0.05, T:0.24
Consensus pattern (72 bp):
ATATCCAAAAATCAAACATAAACAACTATTGATAAAACTAGATTACACAAAAATAAGTAGAACAT
AAATTCA
Found at i:99034741 original size:12 final size:12
Alignment explanation
Indices: 99034724--99034775 Score: 56
Period size: 12 Copynumber: 4.6 Consensus size: 12
99034714 AGACAACGCC
99034724 CAGCAGCAACAG
1 CAGCAGCAACAG
*
99034736 CAGCAGCAGCAG
1 CAGCAGCAACAG
*
99034748 C--CA-CAAGAG
1 CAGCAGCAACAG
*
99034757 CAGCAACAACAG
1 CAGCAGCAACAG
99034769 CAGCAGC
1 CAGCAGC
99034776 CACAACTGCA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
9 5 0.16
10 2 0.06
11 2 0.06
12 23 0.72
ACGTcount: A:0.40, C:0.35, G:0.25, T:0.00
Consensus pattern (12 bp):
CAGCAGCAACAG
Found at i:99034780 original size:15 final size:15
Alignment explanation
Indices: 99034739--99034787 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
99034729 GCAACAGCAG
99034739 CAGCAGCAGCCAC-A
1 CAGCAGCAGCCACAA
*
99034753 -AG-AGCAGCAACAA
1 CAGCAGCAGCCACAA
99034766 CAGCAGCAGCCACAA
1 CAGCAGCAGCCACAA
*
99034781 CTGCAGC
1 CAGCAGC
99034788 TGCCGCGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 8 0.28
13 3 0.10
14 2 0.07
15 16 0.55
ACGTcount: A:0.39, C:0.37, G:0.22, T:0.02
Consensus pattern (15 bp):
CAGCAGCAGCCACAA
Found at i:99034850 original size:18 final size:18
Alignment explanation
Indices: 99034816--99034854 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
99034806 AACTGGTCAA
*
99034816 GGTTAAGAAAGTAGTGGT
1 GGTTAAGAAAGAAGTGGT
99034834 GGTTAAG-AAGAAGGTGGT
1 GGTTAAGAAAGAA-GTGGT
99034852 GGT
1 GGT
99034855 GGGAGCAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.31, C:0.00, G:0.44, T:0.26
Consensus pattern (18 bp):
GGTTAAGAAAGAAGTGGT
Found at i:99049273 original size:178 final size:179
Alignment explanation
Indices: 99048973--99049328 Score: 651
Period size: 178 Copynumber: 2.0 Consensus size: 179
99048963 TCCTTTTTTC
* * *
99048973 TTTTTCAATCTTTTAACTTTGTTTATTTGCTCCAATTTTACTGTTGGGTGCATCCTGCTTAACGT
1 TTTTTCAATCTTTTAACGTTGTTTATTTGCTCCAATTTTACTGTTGGGTGCATCATGCGTAACGT
99049038 GAAAACATGACATTTTTGTACCCCAAAAAAAGCATGACACATTTCTGGTTCAAACCGAGATTGAT
66 GAAAACATGACATTTTTGTACCCCAAAAAAAGCATGACACATTTCTGGTTCAAACCGAGATTGAT
* *
99049103 ATAGCTATGTCCCCTGATTTACCACTTTGTGCATCAGTGACAGTGACTT
131 ATAGCTATGTCCCCCGATTTACCACTCTGTGCATCAGTGACAGTGACTT
*
99049152 TTTTTCAATCTTTTAACGTTGTTTATTTGCT-CATTTTTACTGTTGGGTGCATCATGCGTAACGT
1 TTTTTCAATCTTTTAACGTTGTTTATTTGCTCCAATTTTACTGTTGGGTGCATCATGCGTAACGT
99049216 GAAAACATGACATTTTTGTACCCCAAAAAAAGCATGACACATTTCTGGTTCAAACCGAGATTGAT
66 GAAAACATGACATTTTTGTACCCCAAAAAAAGCATGACACATTTCTGGTTCAAACCGAGATTGAT
99049281 ATAGCTATGTCCCCCGATTTACCACTCTGTGCATCAGTGACAGTGACT
131 ATAGCTATGTCCCCCGATTTACCACTCTGTGCATCAGTGACAGTGACT
99049329 GGATGAAAAG
Statistics
Matches: 171, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
178 141 0.82
179 30 0.18
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (179 bp):
TTTTTCAATCTTTTAACGTTGTTTATTTGCTCCAATTTTACTGTTGGGTGCATCATGCGTAACGT
GAAAACATGACATTTTTGTACCCCAAAAAAAGCATGACACATTTCTGGTTCAAACCGAGATTGAT
ATAGCTATGTCCCCCGATTTACCACTCTGTGCATCAGTGACAGTGACTT
Found at i:99053354 original size:15 final size:15
Alignment explanation
Indices: 99053334--99053363 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
99053324 GCGCAAGCCT
99053334 ATAAAATTATTAAAA
1 ATAAAATTATTAAAA
99053349 ATAAAATTATTAAAA
1 ATAAAATTATTAAAA
99053364 TCTATAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAAAATTATTAAAA
Found at i:99053380 original size:25 final size:24
Alignment explanation
Indices: 99053335--99053388 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
99053325 CGCAAGCCTA
99053335 TAAAATTATTAAAAATAAAATTAT-
1 TAAAATTATTAAAAATAAAA-TATG
*
99053359 TAAAATCTA-TAAAAATTTAAATATG
1 TAAAAT-TATTAAAAA-TAAAATATG
99053384 TAAAA
1 TAAAA
99053389 AATTCAAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
24 15 0.58
25 11 0.42
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (24 bp):
TAAAATTATTAAAAATAAAATATG
Found at i:99053752 original size:16 final size:16
Alignment explanation
Indices: 99053729--99053784 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
99053719 CGTTTGGTTC
*
99053729 GCTGTAATAGAATAGA
1 GCTGTAATGGAATAGA
*
99053745 GTTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
99053761 GCTGTAATGGAATAAA
1 GCTGTAATGGAATAGA
*
99053777 ACTGTAAT
1 GCTGTAAT
99053785 TAGTAATTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.41, C:0.05, G:0.25, T:0.29
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:99063651 original size:12 final size:12
Alignment explanation
Indices: 99063634--99063658 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
99063624 TTTGTAAAGA
99063634 TAATGCATAAAT
1 TAATGCATAAAT
99063646 TAATGCATAAAT
1 TAATGCATAAAT
99063658 T
1 T
99063659 TGGTACCTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (12 bp):
TAATGCATAAAT
Found at i:99068202 original size:27 final size:28
Alignment explanation
Indices: 99068170--99068223 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
99068160 TAACAAGTTC
*
99068170 AATTAATTAGTT-TGAGTTATCAAATTT
1 AATTAATTAATTATGAGTTATCAAATTT
*
99068197 AATTAATTAATTATGAGTTATGAAATT
1 AATTAATTAATTATGAGTTATCAAATT
99068224 CAAGTAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.46
Consensus pattern (28 bp):
AATTAATTAATTATGAGTTATCAAATTT
Found at i:99068940 original size:19 final size:20
Alignment explanation
Indices: 99068911--99068953 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
99068901 CATTATCATG
99068911 TTATATTTTTCTATTATT-TT
1 TTATATTTTTCTATT-TTGTT
99068931 TTAT-TTTTTCTATTTTGTT
1 TTATATTTTTCTATTTTGTT
99068950 TTAT
1 TTAT
99068954 GTCATGTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 2 0.09
19 16 0.73
20 4 0.18
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (20 bp):
TTATATTTTTCTATTTTGTT
Found at i:99081775 original size:39 final size:39
Alignment explanation
Indices: 99081720--99081855 Score: 200
Period size: 39 Copynumber: 3.5 Consensus size: 39
99081710 GCTCTGATGA
99081720 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
99081759 ACTTCAGTTAGCCTTCGGGCTTTCGTTTAACACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
99081798 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
99081837 GCTTTAGCTAGACTTCGGG
1 GCTTCAGTTAGCCTTCGGG
99081856 TTTCAGATCA
Statistics
Matches: 86, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 86 1.00
ACGTcount: A:0.14, C:0.24, G:0.24, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:99088094 original size:39 final size:39
Alignment explanation
Indices: 99087995--99088095 Score: 139
Period size: 39 Copynumber: 2.6 Consensus size: 39
99087985 ACTCTGATGA
* * *
99087995 GCTTCAGTTAGCCTTCAGGATTCTATTTAACACTTGTGT
1 GCTTCAGTTAGCCTTCAGGCTTCCATTTAACACTTATGT
*
99088034 GCTTCAGTTAGCCTTCAGGCTTCCATTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCAGGCTTCCATTTAACACTTATGT
* * *
99088073 GCTTCAGCTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCAGGCTTC
99088096 AGATCACGAT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCAGGCTTCCATTTAACACTTATGT
Found at i:99088798 original size:14 final size:14
Alignment explanation
Indices: 99088779--99088814 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
99088769 GAGTTTTTTT
99088779 AAAATAACAATAAA
1 AAAATAACAATAAA
*
99088793 AAAATAAAAATAAA
1 AAAATAACAATAAA
99088807 AAAATAAC
1 AAAATAAC
99088815 TATATTATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAATAACAATAAA
Found at i:99094174 original size:3 final size:3
Alignment explanation
Indices: 99094166--99094210 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
99094156 CTCTAAAATT
99094166 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT- TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
99094211 CTTATGCAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:99095813 original size:4 final size:4
Alignment explanation
Indices: 99095806--99095844 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
99095796 TCCTTCGTAC
99095806 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTA
99095845 CATGTGTGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (4 bp):
GTAT
Found at i:99103189 original size:22 final size:21
Alignment explanation
Indices: 99103164--99103216 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
99103154 AATTTTATTT
* *
99103164 TTTATAAAGTTTATATTTTAAA
1 TTTATAAAATTTATAATTT-AA
*
99103186 TTTAGTAAAATTTTTAATTTAA
1 TTTA-TAAAATTTATAATTTAA
99103208 TTTAATAAA
1 TTT-ATAAA
99103217 TTAATACAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 13 0.50
23 13 0.50
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTATAAAATTTATAATTTAA
Found at i:99104659 original size:25 final size:25
Alignment explanation
Indices: 99104631--99104716 Score: 81
Period size: 25 Copynumber: 3.5 Consensus size: 25
99104621 ATATTGATAA
* *
99104631 ATATTAATGAAAAGAAACGCAAAGC
1 ATATAAATTAAAAGAAACGCAAAGC
**
99104656 ATATAAATTAAAA-ATATTG-ATAA--
1 ATATAAATTAAAAGA-AACGCA-AAGC
*
99104679 ATATTAATTAAAAGAAACGCAAAGC
1 ATATAAATTAAAAGAAACGCAAAGC
99104704 ATATAAATTAAAA
1 ATATAAATTAAAA
99104717 AGCCATTATC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
23 16 0.34
24 4 0.09
25 27 0.57
ACGTcount: A:0.59, C:0.07, G:0.09, T:0.24
Consensus pattern (25 bp):
ATATAAATTAAAAGAAACGCAAAGC
Found at i:99104685 original size:48 final size:48
Alignment explanation
Indices: 99104609--99104717 Score: 200
Period size: 48 Copynumber: 2.3 Consensus size: 48
99104599 TTGGGTGTTT
*
99104609 TATAGATTAAAAATATTGATAAATATTAATGAAAAGAAACGCAAAGCA
1 TATAAATTAAAAATATTGATAAATATTAATGAAAAGAAACGCAAAGCA
*
99104657 TATAAATTAAAAATATTGATAAATATTAATTAAAAGAAACGCAAAGCA
1 TATAAATTAAAAATATTGATAAATATTAATGAAAAGAAACGCAAAGCA
99104705 TATAAATTAAAAA
1 TATAAATTAAAAA
99104718 GCCATTATCC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.27
Consensus pattern (48 bp):
TATAAATTAAAAATATTGATAAATATTAATGAAAAGAAACGCAAAGCA
Found at i:99104687 original size:23 final size:23
Alignment explanation
Indices: 99104614--99104691 Score: 70
Period size: 23 Copynumber: 3.3 Consensus size: 23
99104604 TGTTTTATAG
99104614 ATTAAAAATATTGATAAATATTA
1 ATTAAAAATATTGATAAATATTA
* ** *
99104637 ATGAAAAGA-AACGCA-AAGCATATAA
1 ATTAAAA-ATATTG-ATAA--ATATTA
99104662 ATTAAAAATATTGATAAATATTA
1 ATTAAAAATATTGATAAATATTA
99104685 ATTAAAA
1 ATTAAAA
99104692 GAAACGCAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
23 22 0.54
24 4 0.10
25 15 0.37
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.29
Consensus pattern (23 bp):
ATTAAAAATATTGATAAATATTA
Found at i:99105867 original size:45 final size:45
Alignment explanation
Indices: 99105803--99106019 Score: 229
Period size: 45 Copynumber: 4.8 Consensus size: 45
99105793 AACAATTAGG
* * *
99105803 ATATACATATAGGAGGTACTATGTATCAGTGTTGGCTATCATGTC
1 ATATACATACAGCAGGTACTATGTATCAGTGTTGGCTATCATGCC
* * * **
99105848 ATATACATATAGTAGGTACTACGTATC-GATGCCGGCTATCATGCC
1 ATATACATACAGCAGGTACTATGTATCAG-TGTTGGCTATCATGCC
* * * * * * *
99105893 AAATACATACAGCAAGTACTATGTATCGGTATCGACTTTCATGCC
1 ATATACATACAGCAGGTACTATGTATCAGTGTTGGCTATCATGCC
* * *
99105938 ATATAAATACAGCAGGTACTATATATCAGTGTTGGCTATCATACC
1 ATATACATACAGCAGGTACTATGTATCAGTGTTGGCTATCATGCC
* * *
99105983 ATATACATACAACAGGTATTATGTATCGGTGTTGGCT
1 ATATACATACAGCAGGTACTATGTATCAGTGTTGGCT
99106020 TTTATACCAT
Statistics
Matches: 141, Mismatches: 29, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
44 1 0.01
45 139 0.99
46 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (45 bp):
ATATACATACAGCAGGTACTATGTATCAGTGTTGGCTATCATGCC
Found at i:99106027 original size:45 final size:45
Alignment explanation
Indices: 99105816--99106062 Score: 194
Period size: 45 Copynumber: 5.5 Consensus size: 45
99105806 TACATATAGG
* * ** * **
99105816 AGGTACTATGTATCAGTGTTGGCTATCATGTCATATACATATAGT
1 AGGTACTATGTATCGGTGTTGGCTTTCATACCATATACATACAAC
* * ** * * * *
99105861 AGGTACTACGTATCGATGCCGGCTATCATGCCAAATACATACAGC
1 AGGTACTATGTATCGGTGTTGGCTTTCATACCATATACATACAAC
* * * * * * *
99105906 AAGTACTATGTATCGGTATCGACTTTCATGCCATATAAATACAGC
1 AGGTACTATGTATCGGTGTTGGCTTTCATACCATATACATACAAC
* * *
99105951 AGGTACTATATATCAGTGTTGGCTATCATACCATATACATACAAC
1 AGGTACTATGTATCGGTGTTGGCTTTCATACCATATACATACAAC
* *
99105996 AGGTATTATGTATCGGTGTTGGCTTTTATACCATATAAGCAT--AAC
1 AGGTACTATGTATCGGTGTTGGCTTTCATACCATAT-A-CATACAAC
*
99106041 AGGTAATATGTA-CGGGTGTTGG
1 AGGTACTATGTATC-GGTGTTGG
99106063 TTATTTTGCC
Statistics
Matches: 165, Mismatches: 34, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
44 1 0.01
45 160 0.97
46 1 0.01
47 3 0.02
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (45 bp):
AGGTACTATGTATCGGTGTTGGCTTTCATACCATATACATACAAC
Found at i:99108011 original size:20 final size:20
Alignment explanation
Indices: 99107986--99108026 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
99107976 AAAAGAAGAA
99107986 ATTTAAAA-AAAAGAATAAAT
1 ATTTAAAACAAAA-AATAAAT
*
99108006 ATTTAAAACAATAAATAAAT
1 ATTTAAAACAAAAAATAAAT
99108026 A
1 A
99108027 AATGAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (20 bp):
ATTTAAAACAAAAAATAAAT
Found at i:99108028 original size:16 final size:16
Alignment explanation
Indices: 99107953--99108028 Score: 55
Period size: 16 Copynumber: 4.7 Consensus size: 16
99107943 AGATTTAGGA
*
99107953 AAATAAAGAAAACAA-
1 AAATAAATAAAACAAT
* * *
99107968 AAATAACTAAAAGAAG
1 AAATAAATAAAACAAT
* *
99107984 AAATTTAAAAAAAAGAAT
1 AAA--TAAATAAAACAAT
**
99108002 AAATATTTAAAACAAT
1 AAATAAATAAAACAAT
99108018 AAATAAATAAA
1 AAATAAATAAA
99108029 TGAAAAATTA
Statistics
Matches: 46, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
15 12 0.26
16 21 0.46
18 13 0.28
ACGTcount: A:0.72, C:0.04, G:0.05, T:0.18
Consensus pattern (16 bp):
AAATAAATAAAACAAT
Found at i:99108148 original size:32 final size:32
Alignment explanation
Indices: 99108112--99108180 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
99108102 CAACAAATTC
*
99108112 AATTAATAGCTCTAATCAACCAT-TCAAGAAAT
1 AATTAATAGCTCTAATCAACCATCT-AAAAAAT
*
99108144 AATTAATGGCTCTAATCAACCATCTAAAAAAT
1 AATTAATAGCTCTAATCAACCATCTAAAAAAT
99108176 AATTA
1 AATTA
99108181 TTGACAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 33 0.97
33 1 0.03
ACGTcount: A:0.48, C:0.17, G:0.06, T:0.29
Consensus pattern (32 bp):
AATTAATAGCTCTAATCAACCATCTAAAAAAT
Found at i:99109424 original size:19 final size:19
Alignment explanation
Indices: 99109400--99109441 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
99109390 TAAAATTTGA
99109400 AATAAATAAATAATAAA-AT
1 AATAAA-AAATAATAAATAT
*
99109419 AATAAAAACTAATAAATAT
1 AATAAAAAATAATAAATAT
99109438 AATA
1 AATA
99109442 TTGGACTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (19 bp):
AATAAAAAATAATAAATAT
Found at i:99111559 original size:18 final size:19
Alignment explanation
Indices: 99111536--99111577 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
99111526 TTAGAATTTC
*
99111536 TTTTATCGT-ACTAATATT
1 TTTTATAGTAACTAATATT
*
99111554 TTTTATAGTAATTAATATT
1 TTTTATAGTAACTAATATT
99111573 TTTTA
1 TTTTA
99111578 AAATATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.60
Consensus pattern (19 bp):
TTTTATAGTAACTAATATT
Found at i:99117221 original size:22 final size:21
Alignment explanation
Indices: 99117190--99117231 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
99117180 AAATGTTATA
* *
99117190 ATTTTTAATAATTTTTATATG
1 ATTTTTAATAAATTTAATATG
99117211 ATTTTTAAATAAATTTAATAT
1 ATTTTT-AATAAATTTAATAT
99117232 TCTTTTACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
ATTTTTAATAAATTTAATATG
Found at i:99132152 original size:38 final size:38
Alignment explanation
Indices: 99132106--99132209 Score: 140
Period size: 38 Copynumber: 2.7 Consensus size: 38
99132096 GGCTTAAAGA
* *
99132106 CCCGCAGGCTATATGCTGGAATTATATCCGGATTAAAT
1 CCCGCAGGCTATGTGCTGGTATTATATCCGGATTAAAT
* *
99132144 CTCGCAGGCT-TGGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTAT-GTGCTGGTATTATATCCGGATTAAAT
99132182 CCCGCAGGCCTA-GTGCTGGTATTATATC
1 CCCGCAGG-CTATGTGCTGGTATTATATC
99132210 TGAGTTTAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
37 1 0.02
38 55 0.95
39 2 0.03
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (38 bp):
CCCGCAGGCTATGTGCTGGTATTATATCCGGATTAAAT
Found at i:99139024 original size:111 final size:111
Alignment explanation
Indices: 99138825--99139047 Score: 347
Period size: 111 Copynumber: 2.0 Consensus size: 111
99138815 CTACCATCCT
*
99138825 ATCTCCCTAAAGCTGTAGTGGAATAGGCTGAAGATTGTAGATCTTATTTACCTGAAATTGCAGTG
1 ATCTCCCTAAAGCTGTAGTGGAATAGGCTAAAGATTGTAGATCTTATTTACCTGAAATTGCAGTG
* *
99138890 GAGCAGATCGAAGACGGCAAATCTTGTCTTTCTGAAGTTGCAGTGA
66 GACCAGATCGAAGACGGCAAATCTTGTCTTCCTGAAGTTGCAGTGA
* * * * *
99138936 ATCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAGATTGTAGATCTTGTTTCCCTGAAGTTGCAGTG
1 ATCTCCCTAAAGCTGTAGTGGAATAGGCTAAAGATTGTAGATCTTATTTACCTGAAATTGCAGTG
* * *
99139001 GACCAGATCGAAGATGGCGAATCTTGTCTTCCTGAAGTTGCGGTGA
66 GACCAGATCGAAGACGGCAAATCTTGTCTTCCTGAAGTTGCAGTGA
99139047 A
1 A
99139048 ACAGATTTAA
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
111 101 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (111 bp):
ATCTCCCTAAAGCTGTAGTGGAATAGGCTAAAGATTGTAGATCTTATTTACCTGAAATTGCAGTG
GACCAGATCGAAGACGGCAAATCTTGTCTTCCTGAAGTTGCAGTGA
Found at i:99140200 original size:37 final size:37
Alignment explanation
Indices: 99140159--99140244 Score: 145
Period size: 37 Copynumber: 2.3 Consensus size: 37
99140149 AGGGCTGAAT
* *
99140159 ACGGCATCGTTTTAAGCCTGATTTAGTGGCTCCAAAA
1 ACGGCGTCGTTTTAAGCCTGATTCAGTGGCTCCAAAA
*
99140196 ACGGCGTCGTTTTGAGCCTGATTCAGTGGCTCCAAAA
1 ACGGCGTCGTTTTAAGCCTGATTCAGTGGCTCCAAAA
99140233 ACGGCGTCGTTT
1 ACGGCGTCGTTT
99140245 AGGGGAGGAG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (37 bp):
ACGGCGTCGTTTTAAGCCTGATTCAGTGGCTCCAAAA
Found at i:99143061 original size:25 final size:25
Alignment explanation
Indices: 99143009--99143148 Score: 149
Period size: 25 Copynumber: 5.6 Consensus size: 25
99142999 ATATTCGGGA
* * *
99143009 AAGCTCATACGAGCACATA-AATGGG
1 AAGCTCATGCGAGC-CATATAACGAG
* *
99143034 AAGCTCTTTCGAGCCATATAACGAG
1 AAGCTCATGCGAGCCATATAACGAG
* * *
99143059 AAGCTCATGTGAGCCATGTACCGAG
1 AAGCTCATGCGAGCCATATAACGAG
*
99143084 AAGCTCATGCGAGCCATGTAACGAG
1 AAGCTCATGCGAGCCATATAACGAG
* *
99143109 AAGCTCATGCGAGCCGTA-ATCGAG
1 AAGCTCATGCGAGCCATATAACGAG
*
99143133 AAGCTCATACGAGCCA
1 AAGCTCATGCGAGCCA
99143149 GTATCGGGAA
Statistics
Matches: 98, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
24 23 0.23
25 75 0.77
ACGTcount: A:0.33, C:0.24, G:0.25, T:0.18
Consensus pattern (25 bp):
AAGCTCATGCGAGCCATATAACGAG
Found at i:99143263 original size:26 final size:25
Alignment explanation
Indices: 99143009--99143271 Score: 105
Period size: 25 Copynumber: 10.6 Consensus size: 25
99142999 ATATTCGGGA
* * *
99143009 AAGCTCATACGAGCACATAAAT-GGG
1 AAGCTCATAAGAGC-CATTAATCGAG
* **
99143034 AAGCTCTTTCGAGCCATATAA-CGAG
1 AAGCTCATAAGAGCCAT-TAATCGAG
** *
99143059 AAGCTCATGTGAGCCATGT-ACCGAG
1 AAGCTCATAAGAGCCAT-TAATCGAG
**
99143084 AAGCTCATGCGAGCCATGTAA-CGAG
1 AAGCTCATAAGAGCCAT-TAATCGAG
** *
99143109 AAGCTCATGCGAGCC-GTAATCGAG
1 AAGCTCATAAGAGCCATTAATCGAG
* * *
99143133 AAGCTCATACGAGCCAGT-ATCGGG
1 AAGCTCATAAGAGCCATTAATCGAG
* * *
99143157 AAGGTTCA-AACGAGCCAAT-ATCGGG
1 AA-GCTCATAA-GAGCCATTAATCGAG
*** *
99143182 AAGCTCCGGAGAGCTATTAA-CG-G
1 AAGCTCATAAGAGCCATTAATCGAG
* *
99143205 AAAGCACAAAAAGAGCCATTAATCGAG
1 -AAGCTC-ATAAGAGCCATTAATCGAG
* * *
99143232 AAGCTCATGAAGAGCCATTTATTGGG
1 AAGCTCAT-AAGAGCCATTAATCGAG
*
99143258 ATGCTCATAAGAGC
1 AAGCTCATAAGAGC
99143272 TACGGTGTGT
Statistics
Matches: 192, Mismatches: 31, Indels: 30
0.76 0.12 0.12
Matches are distributed among these distances:
23 4 0.02
24 46 0.24
25 112 0.58
26 29 0.15
27 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (25 bp):
AAGCTCATAAGAGCCATTAATCGAG
Found at i:99156666 original size:9 final size:9
Alignment explanation
Indices: 99156652--99156726 Score: 89
Period size: 9 Copynumber: 8.4 Consensus size: 9
99156642 TGTGGTTAAA
99156652 AATTAACCG
1 AATTAACCG
*
99156661 AATTAAACG
1 AATTAACCG
*
99156670 AGTTAACCG
1 AATTAACCG
99156679 AATTAACCG
1 AATTAACCG
*
99156688 AATTAACTG
1 AATTAACCG
*
99156697 AATTAACCA
1 AATTAACCG
99156706 AATTAACC-
1 AATTAACCG
* *
99156714 AAATACCCG
1 AATTAACCG
99156723 AATT
1 AATT
99156727 GAATTACTAC
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
8 6 0.11
9 49 0.89
ACGTcount: A:0.47, C:0.20, G:0.09, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:99156756 original size:17 final size:17
Alignment explanation
Indices: 99156734--99156828 Score: 55
Period size: 17 Copynumber: 5.2 Consensus size: 17
99156724 ATTGAATTAC
99156734 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
99156751 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
*
99156771 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
* * *
99156788 TACATAAGTCTATGAATCAC
1 TACATAA-T-TA-AAAACAT
*
99156808 TACATAATTTAAAACAT
1 TACATAATTAAAAACAT
99156825 TACA
1 TACA
99156829 AGTCTTTGAA
Statistics
Matches: 55, Mismatches: 17, Indels: 12
0.65 0.20 0.14
Matches are distributed among these distances:
17 27 0.49
18 2 0.04
19 3 0.05
20 23 0.42
ACGTcount: A:0.48, C:0.15, G:0.04, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:99156854 original size:72 final size:72
Alignment explanation
Indices: 99156725--99156874 Score: 239
Period size: 72 Copynumber: 2.1 Consensus size: 72
99156715 AATACCCGAA
* *
99156725 TTGAATTACTACATAATTAAAAACATTACATAAGTCTTTGAATCACTACATAATTAAAAATATTA
1 TTGAATCACTACATAATTAAAAACATTACA-AAGTCTTTGAATCACTACATAATTAAAAACATTA
99156790 CATAAGTC
65 CATAAGTC
*
99156798 TATGAATCACTACATAATTTAAAACATTAC-AAGTCTTTGAATCACTACATAATTAAAAACATTA
1 T-TGAATCACTACATAATTAAAAACATTACAAAGTCTTTGAATCACTACATAATTAAAAACATTA
*
99156862 TATAAGTC
65 CATAAGTC
99156870 TTGAA
1 TTGAA
99156875 ATTAACACAT
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
71 4 0.06
72 41 0.57
73 1 0.01
74 26 0.36
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.34
Consensus pattern (72 bp):
TTGAATCACTACATAATTAAAAACATTACAAAGTCTTTGAATCACTACATAATTAAAAACATTAC
ATAAGTC
Found at i:99156888 original size:37 final size:37
Alignment explanation
Indices: 99156725--99156871 Score: 235
Period size: 37 Copynumber: 4.0 Consensus size: 37
99156715 AATACCCGAA
*
99156725 TTGAATTACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
99156762 TTGAATCACTACATAATTAAAAATATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
* *
99156799 ATGAATCACTACATAATTTAAAACATTAC--AAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
99156834 TTGAATCACTACATAATTAAAAACATTATATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
99156871 T
1 T
99156872 GAAATTAACA
Statistics
Matches: 100, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
35 32 0.32
37 68 0.68
ACGTcount: A:0.46, C:0.14, G:0.05, T:0.35
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:99159418 original size:12 final size:11
Alignment explanation
Indices: 99159398--99159431 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
99159388 AGAATACTTG
99159398 TTAAATAAAAT
1 TTAAATAAAAT
*
99159409 TTATAATAAAAA
1 TTA-AATAAAAT
99159421 TTAAATAAAAT
1 TTAAATAAAAT
99159432 ATTGGTACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TTAAATAAAAT
Found at i:99159659 original size:39 final size:39
Alignment explanation
Indices: 99159616--99159691 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
99159606 AAAATGAGAA
99159616 ATGGACAGCAAGTTATAAAGCAGTTATAAAACAAACGTC
1 ATGGACAGCAAGTTATAAAGCAGTTATAAAACAAACGTC
99159655 ATGGACAGCAAGTTATAAAGCAGTTATAAAACAAACG
1 ATGGACAGCAAGTTATAAAGCAGTTATAAAACAAACG
99159692 AATACGACAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.20
Consensus pattern (39 bp):
ATGGACAGCAAGTTATAAAGCAGTTATAAAACAAACGTC
Found at i:99160791 original size:21 final size:20
Alignment explanation
Indices: 99160754--99160793 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
99160744 TTTTAGTAGA
*
99160754 TTTTTACTTTTAGATTATTG
1 TTTTTACTTTTAAATTATTG
*
99160774 TTTTTATTTATTAAATTATT
1 TTTTTACTT-TTAAATTATT
99160794 TGTATTGGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTTACTTTTAAATTATTG
Found at i:99161032 original size:18 final size:19
Alignment explanation
Indices: 99160997--99161046 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
99160987 AACCGACCGA
99160997 TTAACCGAATTGGGTCGG-
1 TTAACCGAATTGGGTCGGT
***
99161015 TTAACCGAATTTTTTCGGTT
1 TTAACCGAATTGGGTCGG-T
99161035 TTAACCGAATTG
1 TTAACCGAATTG
99161047 TGCACACCCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 15 0.58
20 11 0.42
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (19 bp):
TTAACCGAATTGGGTCGGT
Found at i:99161566 original size:176 final size:175
Alignment explanation
Indices: 99161269--99162599 Score: 1808
Period size: 176 Copynumber: 7.6 Consensus size: 175
99161259 GCAATATTGG
* ** * * * * * *
99161269 TGAAGATTGAAGATTTTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAAATGGTGAATCTTATC
1 TGAAGATTGAAGATCTTATCTCCCT-AAGCAGTAGCGGAGCAGATCGAAGA-GGCGAATCATATC
* * *
99161334 TCCATGTATTGGCAATGGAGCAGATTTTA-CCACCAACCTTATCTCTCTGAGGTAGCAAGAGAGC
64 TCCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGC
* * * * * **
99161398 AGATTGAAGAATAATTTTTATCTTTCTGAGGTAATAAGAAAGCAGAC
129 AGGTTGAAGATTGAGTATTATCTTTCTGAGGTAGCAAGAAAGCAGAC
99161445 TGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCAGAAGAGGCGAATCATATCT
1 TGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATC-GAAGAGGCGAATCATATCT
* * *
99161510 CCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATTTCTCTAAGGTAGCAAGAGAGAA
65 CCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCA
* * *
99161575 GGTTGAAGATTGAGTCTTATCTTTTTGAGGTAGCAAGAAAGTAGAC
130 GGTTGAAGATTGAGTATTATCTTTCTGAGGTAGCAAGAAAGCAGAC
* * *
99161621 TGAAGATTGAATATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAAGAGCCGAATCACATCT
1 TGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCG-AAGAGGCGAATCATATCT
* *
99161686 CCATGTGTCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTTAGGTAGCAAGAGAGCA
65 CCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCA
99161751 GGTTGAAGATTGAGTATTATCTTTCTGAGGTAGCAAGAAAGCAGAC
130 GGTTGAAGATTGAGTATTATCTTTCTGAGGTAGCAAGAAAGCAGAC
*
99161797 TGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGTAGATCGGAAGAGGCGAATCATATCT
1 TGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATC-GAAGAGGCGAATCATATCT
* * *
99161862 CCATGTATCAGCAATGGAGCAGATTTTAGCCACTAGCCTTATTTCTCTAAGGTAGCAAGAGAGCA
65 CCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCA
* *
99161927 GGTTGAAGATTGAGTCTTATCTTTCTGAGATAGCAAGAAAGCAGAC
130 GGTTGAAGATTGAGTATTATCTTTCTGAGGTAGCAAGAAAGCAGAC
*
99161973 TGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAAGAGGCGAATCACATCT
1 TGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCG-AAGAGGCGAATCATATCT
* * * * *
99162038 TCATGTGTCGGCAATAGAGCAGATTTTAGCCACTAGCCTTATCTCTATTAGGTAGCAAGAGAGCA
65 CCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCA
*
99162103 GGTTGAAGATTGAGTATTATCTTTCTGAGGTAGCAAGAAAGCAAAC
130 GGTTGAAGATTGAGTATTATCTTTCTGAGGTAGCAAGAAAGCAGAC
* * * *
99162149 TAAAGATTGAAGATCTTATCTCTCTAAACAGTAGCGGAGCAGATCAGAAGAGGCGAATCTTATCT
1 TGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATC-GAAGAGGCGAATCATATCT
* * * * * *
99162214 CCATGTATCGGTAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTTTGAGGTAGCAAGAGAACA
65 CCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCA
*
99162279 GGTTGAAGATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGAC
130 GGTTGAAGATTGAGTATTATCTTTCTGAGGTAGCAAGAAAGCAGAC
* *
99162325 TGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGCGAATCTTATCT
1 TGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCG-AAGAGGCGAATCATATCT
* * * * *
99162390 CCATGCATCAGTAATGGAGCAGATTTTAACAACTAG-CTCTATCTCTCTGAGGTAGCAAGAGAGC
65 CCATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCT-TATCTCTCTGAGGTAGCAAGAGAGC
** * * *
99162454 AGGTTGGCGATTGTAATATTATCTTCCTGAGGTAGCAAGGAAGCAGAC
129 AGGTTGAAGATTG-AGTATTATCTTTCTGAGGTAGCAAGAAAGCAGAC
* * * * * * * *
99162502 TGAAGATTGAAGATC-TATTTCCCGAAACAGTTGTGGAACAGAT-TAAGGATGGC-AGATCTTAT
1 TGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAA-GA-GGCGA-ATCATAT
* * * *
99162564 CTCCATGTATTGGCGATGGGGCAGATTTGAGCCACT
63 CTCCATGTATCGGCAATGGAGCAGATTTTAGCCACT
99162600 GGTCCTATTT
Statistics
Matches: 1036, Mismatches: 107, Indels: 24
0.89 0.09 0.02
Matches are distributed among these distances:
174 2 0.00
175 62 0.06
176 925 0.89
177 47 0.05
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (175 bp):
TGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAGGCGAATCATATCTC
CATGTATCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAG
GTTGAAGATTGAGTATTATCTTTCTGAGGTAGCAAGAAAGCAGAC
Found at i:99161782 original size:43 final size:43
Alignment explanation
Indices: 99161724--99161806 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
99161714 GCCACTAGCC
* * **
99161724 TTATCTCTCTTAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTA
1 TTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAGTA
*
99161767 TTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGA
1 TTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGA
99161807 AGATCTTATC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.29
Consensus pattern (43 bp):
TTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAGTA
Found at i:99162312 original size:43 final size:45
Alignment explanation
Indices: 99162251--99162346 Score: 128
Period size: 43 Copynumber: 2.2 Consensus size: 45
99162241 AGCCCCAAGC
**
99162251 CTTATCTCTTTGAGGTAGCAAGAGAA-CAGGTTGAAGATTG-AG-T
1 CTTATCTCTTTGAGGTAGCAAGA-AAGCAGACTGAAGATTGAAGAT
99162294 CTTATCT-TTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGAT
1 CTTATCTCTT-TGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGAT
99162339 CTTATCTC
1 CTTATCTC
99162347 CCTAAGCAGT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
42 4 0.09
43 32 0.70
44 2 0.04
45 8 0.17
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (45 bp):
CTTATCTCTTTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGAT
Found at i:99162773 original size:18 final size:18
Alignment explanation
Indices: 99162739--99162787 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
99162729 CCCGAGCCCA
**
99162739 TAAAAATAAAAGTAAAAC
1 TAAAAATAAAAAAAAAAC
99162757 TAAAAATAAAAAAAAAAC
1 TAAAAATAAAAAAAAAAC
*
99162775 CAAAAA-AAAAAAA
1 TAAAAATAAAAAAA
99162788 CCAAATTGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 7 0.25
18 21 0.75
ACGTcount: A:0.82, C:0.06, G:0.02, T:0.10
Consensus pattern (18 bp):
TAAAAATAAAAAAAAAAC
Found at i:99162781 original size:14 final size:14
Alignment explanation
Indices: 99162764--99162792 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
99162754 AACTAAAAAT
99162764 AAAAAAAAAACCAA
1 AAAAAAAAAACCAA
99162778 AAAAAAAAAACCAA
1 AAAAAAAAAACCAA
99162792 A
1 A
99162793 TTGTTTATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAACCAA
Found at i:99166168 original size:13 final size:13
Alignment explanation
Indices: 99166150--99166177 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
99166140 TTTTATTTTA
99166150 TTATTTATCATCT
1 TTATTTATCATCT
99166163 TTATTTATCATCT
1 TTATTTATCATCT
99166176 TT
1 TT
99166178 CCAATTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATTTATCATCT
Found at i:99168508 original size:25 final size:20
Alignment explanation
Indices: 99168453--99168495 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
99168443 TAGGTATTTG
99168453 TTGCTGATTGTGGTGGAATT
1 TTGCTGATTGTGGTGGAATT
99168473 TTGCTGATTGTGGTGGAATT
1 TTGCTGATTGTGGTGGAATT
99168493 TTG
1 TTG
99168496 ATCTGGTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.14, C:0.05, G:0.35, T:0.47
Consensus pattern (20 bp):
TTGCTGATTGTGGTGGAATT
Found at i:99174231 original size:120 final size:119
Alignment explanation
Indices: 99173985--99174359 Score: 515
Period size: 120 Copynumber: 3.2 Consensus size: 119
99173975 GGAGAAGCTG
** * *
99173985 CAGCAGTTTGAGATTGAGGAGCCGCCGTCGCCATTGGTGGTTTAGGTTCAGTTACAGCC-TT--T
1 CAGCAGTTTGAGCCTGAGGAGCCGCCGTCGCCATTGGTGGTTTAGGCTCAGATACAGCCTTTGGT
*
99174047 GGAGGTGACGGTACTTTCTGGTCTCTTTGTTTTTCAATACTGGA-GTCTGAAGCTA
66 GGAGGTGACGGTACTTTCTGGTCTCTTTGTTTTTCAATACCGGAGGT-TGAAG-TA
* * * *
99174102 CAGCTGTTTGAGCCTGAGGAACCGCCGTCGCCATTTGTGGTTTAGGCTCAGCTACAGCCTTTGGT
1 CAGCAGTTTGAGCCTGAGGAGCCGCCGTCGCCATTGGTGGTTTAGGCTCAGATACAGCCTTTGGT
* * *
99174167 GGAGGAGACGGTACTTTCTGGTCTCTTAGTTTTTCAACACCGGAGGTTGAAGTTA
66 GGAGGTGACGGTACTTTCTGGTCTCTTTGTTTTTCAATACCGGAGGTTGAAG-TA
* *
99174222 CAGCAGTTTGAGCCTGAGGAGCCGTCGTCGCCATTGGTGGTTTAGGCTCAGATACAGTCTTTGGT
1 CAGCAGTTTGAGCCTGAGGAGCCGCCGTCGCCATTGGTGGTTTAGGCTCAGATACAGCCTTTGGT
* * * * *
99174287 GGAGGTGACGGTACTTTTTGGCCTCTTTGTTTTTCAATGCCGGAGGCTGAAGCA
66 GGAGGTGACGGTACTTTCTGGTCTCTTTGTTTTTCAATACCGGAGGTTGAAGTA
99174341 GCAGCAGTTTGAGCCTGAG
1 -CAGCAGTTTGAGCCTGAG
99174360 CCGTTGCCAT
Statistics
Matches: 227, Mismatches: 26, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
117 52 0.23
118 2 0.01
119 1 0.00
120 170 0.75
121 2 0.01
ACGTcount: A:0.18, C:0.20, G:0.30, T:0.31
Consensus pattern (119 bp):
CAGCAGTTTGAGCCTGAGGAGCCGCCGTCGCCATTGGTGGTTTAGGCTCAGATACAGCCTTTGGT
GGAGGTGACGGTACTTTCTGGTCTCTTTGTTTTTCAATACCGGAGGTTGAAGTA
Found at i:99184937 original size:14 final size:14
Alignment explanation
Indices: 99184914--99184964 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
99184904 AGATACTGCT
*
99184914 CTTAGGATTTAGGG
1 CTTAGTATTTAGGG
**
99184928 CTTAGTATTT-GAT
1 CTTAGTATTTAGGG
99184941 CTTTAG-ATTTAGGG
1 C-TTAGTATTTAGGG
99184955 CTTAGTATTT
1 CTTAGTATTT
99184965 GCAGTTTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
13 10 0.34
14 19 0.66
ACGTcount: A:0.22, C:0.08, G:0.24, T:0.47
Consensus pattern (14 bp):
CTTAGTATTTAGGG
Found at i:99189186 original size:12 final size:12
Alignment explanation
Indices: 99189169--99189194 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
99189159 AAGTTACCCA
99189169 TTGGCTAAAGTT
1 TTGGCTAAAGTT
99189181 TTGGCTAAAGTT
1 TTGGCTAAAGTT
99189193 TT
1 TT
99189195 CGATTCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (12 bp):
TTGGCTAAAGTT
Found at i:99199299 original size:15 final size:15
Alignment explanation
Indices: 99199279--99199309 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
99199269 CTTTTTCATT
99199279 ATCCATAAACTTTAA
1 ATCCATAAACTTTAA
99199294 ATCCATAAACTTTAA
1 ATCCATAAACTTTAA
99199309 A
1 A
99199310 CTACTACAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.32
Consensus pattern (15 bp):
ATCCATAAACTTTAA
Found at i:99199798 original size:77 final size:77
Alignment explanation
Indices: 99199663--99199820 Score: 230
Period size: 77 Copynumber: 2.1 Consensus size: 77
99199653 AACCACTTAA
* * *
99199663 TTAAGAATTTTCAAGTTAAAAATCAATTTAAGGAAAAATAAGTTTTTTTAGTTGCATTTGTCTCA
1 TTAAGAATTTTCAAGTTAAAAATCAATTTAAGGAAAAATAAGTTTTTATAATTACATTTGTCTCA
* *
99199728 CATATTTTCCTTT
66 AATA-TTGCCTTT
*
99199741 TTAAGAATTTTCAAGTT-AAAATCAATTTAAGGAAAGATATA-TTTTTATAATTACATTTGTCTC
1 TTAAGAATTTTCAAGTTAAAAATCAATTTAAGGAAAAATA-AGTTTTTATAATTACATTTGTCTC
99199804 AAATATTGCCTTT
65 AAATATTGCCTTT
99199817 TTAA
1 TTAA
99199821 ATTTTACCAA
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
76 11 0.15
77 44 0.60
78 18 0.25
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.44
Consensus pattern (77 bp):
TTAAGAATTTTCAAGTTAAAAATCAATTTAAGGAAAAATAAGTTTTTATAATTACATTTGTCTCA
AATATTGCCTTT
Found at i:99202777 original size:17 final size:17
Alignment explanation
Indices: 99202723--99202782 Score: 57
Period size: 17 Copynumber: 3.3 Consensus size: 17
99202713 ATTTACGTGT
* *
99202723 TTAATTATTTTAATCAA
1 TTAATTATTTTTATGAA
99202740 TTAATTATATATTCTATTGAA
1 TTAATTAT-T-TT-TA-TGAA
99202761 TTAATTATTTTTATGAA
1 TTAATTATTTTTATGAA
*
99202778 ATAAT
1 TTAAT
99202783 CAAAATATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
17 16 0.44
18 3 0.08
19 4 0.11
20 2 0.06
21 11 0.31
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.53
Consensus pattern (17 bp):
TTAATTATTTTTATGAA
Found at i:99203112 original size:17 final size:17
Alignment explanation
Indices: 99203090--99203128 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
99203080 TTCTTTTTTT
*
99203090 TCTTTTATTTTTCATTC
1 TCTTTTATTTCTCATTC
* *
99203107 TCTTTTGTTTCTCCTTC
1 TCTTTTATTTCTCATTC
99203124 TCTTT
1 TCTTT
99203129 GATTGATCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.05, C:0.23, G:0.03, T:0.69
Consensus pattern (17 bp):
TCTTTTATTTCTCATTC
Found at i:99217149 original size:44 final size:43
Alignment explanation
Indices: 99217086--99217174 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 43
99217076 ATTAATAATT
* * *
99217086 TTAATTTTAATTATTTTTAAATGTGTAATTATCACAATTTCTA
1 TTAATTTTAATTATATTTAAATGTATAATTATCACAACTTCTA
*
99217129 TTAATTTATAATTATATTTAAATGTATAATTATGACAACTTCTA
1 TTAATTT-TAATTATATTTAAATGTATAATTATCACAACTTCTA
99217173 TT
1 TT
99217175 GTATTTCAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 7 0.17
44 34 0.83
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.52
Consensus pattern (43 bp):
TTAATTTTAATTATATTTAAATGTATAATTATCACAACTTCTA
Found at i:99223839 original size:69 final size:69
Alignment explanation
Indices: 99223728--99223866 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
99223718 GATAGGAAAA
*
99223728 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTTGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
99223793 GCTG
66 GCTG
99223797 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
99223862 GCTG
66 GCTG
99223866 A
1 A
99223867 TAGAGTCTTG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28
Consensus pattern (69 bp):
ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
GCTG
Found at i:99227284 original size:22 final size:22
Alignment explanation
Indices: 99227258--99227299 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
99227248 AGGTTCCGTT
*
99227258 TTTTCTTTTTTCTTTTTTTTCC
1 TTTTCTTTTTTATTTTTTTTCC
99227280 TTTTCTTTTTTATTTTTTTT
1 TTTTCTTTTTTATTTTTTTT
99227300 ATTTTTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.86
Consensus pattern (22 bp):
TTTTCTTTTTTATTTTTTTTCC
Found at i:99227305 original size:22 final size:22
Alignment explanation
Indices: 99227257--99227305 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
99227247 GAGGTTCCGT
* *
99227257 TTTTTCTTTTTTCTTTTTTTTC
1 TTTTTCTTTTTTATTTTTTTTA
*
99227279 CTTTTCTTTTTTATTTTTTTTA
1 TTTTTCTTTTTTATTTTTTTTA
99227301 TTTTT
1 TTTTT
99227306 TTTGGTTGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.04, C:0.10, G:0.00, T:0.86
Consensus pattern (22 bp):
TTTTTCTTTTTTATTTTTTTTA
Found at i:99227306 original size:7 final size:7
Alignment explanation
Indices: 99227256--99227297 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
99227246 AGAGGTTCCG
99227256 TTTTTTC
1 TTTTTTC
99227263 TTTTTTC
1 TTTTTTC
99227270 TTTTTT-
1 TTTTTTC
99227276 TTCCTTTTC
1 TT--TTTTC
*
99227285 TTTTTTA
1 TTTTTTC
99227292 TTTTTT
1 TTTTTT
99227298 TTATTTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
6 2 0.06
7 23 0.74
8 4 0.13
9 2 0.06
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTC
Found at i:99237044 original size:33 final size:33
Alignment explanation
Indices: 99236947--99237045 Score: 171
Period size: 33 Copynumber: 3.0 Consensus size: 33
99236937 TTTCTTCTTG
*
99236947 ACATTCCAGCTCCTGTCCAGCAACAAAACACCC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
*
99236980 ACATTCCAGCTCCTGTCCAGCAGCAAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
*
99237013 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
99237046 CCACTCAGTT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 62 1.00
ACGTcount: A:0.31, C:0.41, G:0.10, T:0.17
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
Found at i:99242860 original size:25 final size:25
Alignment explanation
Indices: 99242813--99242860 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
99242803 CCTGCGAAGC
99242813 CAAAAGATAAAAGAAAGAAAGAATT
1 CAAAAGATAAAAGAAAGAAAGAATT
99242838 CAAAAGA-AAATA-AAAGAACAGAA
1 CAAAAGATAAA-AGAAAGAA-AGAA
99242861 ATGAAAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.71, C:0.06, G:0.15, T:0.08
Consensus pattern (25 bp):
CAAAAGATAAAAGAAAGAAAGAATT
Found at i:99242962 original size:18 final size:17
Alignment explanation
Indices: 99242930--99242963 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
99242920 GGCGTGAAAA
*
99242930 CAAAATTGGCTTAAATG
1 CAAAATTGCCTTAAATG
99242947 CAAAATTGACCTTAAAT
1 CAAAATTG-CCTTAAAT
99242964 TGTACTACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (17 bp):
CAAAATTGCCTTAAATG
Found at i:99244117 original size:17 final size:16
Alignment explanation
Indices: 99244084--99244136 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
99244074 ATAATTTTAT
*
99244084 TATTATTAATTTAAAA
1 TATTATAAATTTAAAA
99244100 TATTATAAATTATAAAA
1 TATTATAAATT-TAAAA
*
99244117 TA-TCTAAA-TTAAAA
1 TATTATAAATTTAAAA
*
99244131 TTTTAT
1 TATTAT
99244137 TATTTTAGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
14 6 0.19
15 3 0.10
16 15 0.48
17 7 0.23
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TATTATAAATTTAAAA
Found at i:99257146 original size:29 final size:30
Alignment explanation
Indices: 99257096--99257156 Score: 70
Period size: 31 Copynumber: 2.0 Consensus size: 30
99257086 TCAGAACTAC
* *
99257096 ATATTAATTTTAGTTTAATGTGCAATGTTAT
1 ATATAAATTTTAATTT-ATGTGCAATGTTAT
* *
99257127 ATATAAATTTTAATTT-TGTGTAATTTTAT
1 ATATAAATTTTAATTTATGTGCAATGTTAT
99257156 A
1 A
99257157 CATTTAATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 12 0.46
31 14 0.54
ACGTcount: A:0.34, C:0.02, G:0.10, T:0.54
Consensus pattern (30 bp):
ATATAAATTTTAATTTATGTGCAATGTTAT
Found at i:99258880 original size:12 final size:13
Alignment explanation
Indices: 99258865--99258893 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
99258855 ATTTACATTT
99258865 ATTAATTAAAA-A
1 ATTAATTAAAATA
99258877 ATTAATTAAAATA
1 ATTAATTAAAATA
99258890 ATTA
1 ATTA
99258894 TAATTGAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
ATTAATTAAAATA
Found at i:99259299 original size:23 final size:24
Alignment explanation
Indices: 99259272--99259340 Score: 72
Period size: 23 Copynumber: 2.8 Consensus size: 24
99259262 AGTACAAATA
99259272 TTTTAATTATGATTTGAATTTT-T
1 TTTTAATTATGATTTGAATTTTCT
*
99259295 TTTTATATCATGATATTTGAAATTTTCT
1 TTTTA-ATTATG--ATTTG-AATTTTCT
99259323 TTTT-ATTAT-ATTTGAATT
1 TTTTAATTATGATTTGAATT
99259341 CTTAAATGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
22 4 0.10
23 10 0.26
24 5 0.13
26 9 0.23
27 6 0.15
28 5 0.13
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.62
Consensus pattern (24 bp):
TTTTAATTATGATTTGAATTTTCT
Found at i:99259639 original size:17 final size:18
Alignment explanation
Indices: 99259607--99259674 Score: 79
Period size: 18 Copynumber: 3.9 Consensus size: 18
99259597 GAAAGTTGTG
99259607 ATAATTATACATTTAAAA
1 ATAATTATACATTTAAAA
*
99259625 ATAATTATA-ATTT-AAT
1 ATAATTATACATTTAAAA
* * *
99259641 AGAAGTACACATTTAAAA
1 ATAATTATACATTTAAAA
99259659 ATAATTATA-ATTTAAA
1 ATAATTATACATTTAAA
99259675 TTGCAATTAT
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
16 8 0.20
17 15 0.38
18 17 0.43
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.38
Consensus pattern (18 bp):
ATAATTATACATTTAAAA
Found at i:99262943 original size:16 final size:16
Alignment explanation
Indices: 99262922--99262952 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
99262912 TGATATAAAA
99262922 TATATATGTTTAATAT
1 TATATATGTTTAATAT
*
99262938 TATATATTTTTAATA
1 TATATATGTTTAATA
99262953 ATAAAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
TATATATGTTTAATAT
Found at i:99271810 original size:35 final size:35
Alignment explanation
Indices: 99271764--99271835 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
99271754 TCTTTACTTT
99271764 TTGAAATAAAAATGTAAGTCCAAATATTAACATTA
1 TTGAAATAAAAATGTAAGTCCAAATATTAACATTA
*
99271799 TTGAATTAAAAATGTAAGTCCAAATATTAACATTA
1 TTGAAATAAAAATGTAAGTCCAAATATTAACATTA
99271834 TT
1 TT
99271836 AAAGTTATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.35
Consensus pattern (35 bp):
TTGAAATAAAAATGTAAGTCCAAATATTAACATTA
Found at i:99288151 original size:30 final size:32
Alignment explanation
Indices: 99288117--99288179 Score: 76
Period size: 30 Copynumber: 2.0 Consensus size: 32
99288107 AATTTATATA
* *
99288117 TTTATAAATTTT-AAATAATTAAAT-TAATTT
1 TTTATAAATTTTAAAAGAATAAAATATAATTT
* *
99288147 TTTATTATTTTTAAAAGAATAAAATATAATTT
1 TTTATAAATTTTAAAAGAATAAAATATAATTT
99288179 T
1 T
99288180 ATTTTTACTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 10 0.37
31 10 0.37
32 7 0.26
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (32 bp):
TTTATAAATTTTAAAAGAATAAAATATAATTT
Found at i:99291294 original size:32 final size:31
Alignment explanation
Indices: 99291258--99291362 Score: 83
Period size: 32 Copynumber: 3.3 Consensus size: 31
99291248 TTTTATGTTT
*
99291258 CTTAAAAGTTAGAGAAAAATATTTTTAGGTCC
1 CTTAAAAGTTAGAGAAAAATATTTTT-GGCCC
* *
99291290 CTTAAAACTT-G-GCAAAAATAATTTTTGGGCC
1 CTTAAAAGTTAGAG-AAAAAT-ATTTTTGGCCC
* *
99291321 CTTAAAAGCTA-AAATAAAAT-TTTTTGGGGCCC
1 CTTAAAAGTTAGAGA-AAAATATTTTT--GGCCC
99291353 CTTAAAAGTT
1 CTTAAAAGTT
99291363 GATAAATTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
30 6 0.10
31 20 0.34
32 33 0.56
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (31 bp):
CTTAAAAGTTAGAGAAAAATATTTTTGGCCC
Found at i:99292623 original size:19 final size:22
Alignment explanation
Indices: 99292586--99292630 Score: 69
Period size: 19 Copynumber: 2.2 Consensus size: 22
99292576 AATTTTTAAA
99292586 ATTTTAAAAATATATAAAAATT
1 ATTTTAAAAATATATAAAAATT
99292608 ATTTT-AAAA-ATA-AAAAATT
1 ATTTTAAAAATATATAAAAATT
99292627 ATTT
1 ATTT
99292631 AAATTGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 11 0.48
20 3 0.13
21 4 0.17
22 5 0.22
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
ATTTTAAAAATATATAAAAATT
Found at i:99293761 original size:31 final size:30
Alignment explanation
Indices: 99293702--99293764 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 30
99293692 ATTTTTAATT
*
99293702 CCTATACTTTTCAAATTGGTTAATTTTAGTC
1 CCTATACTTTTCAAATT-GTTAAATTTAGTC
99293733 CCTATACTTTTCAAATT-TTGAAAATTTAGTC
1 CCTATACTTTTCAAATTGTT--AAATTTAGTC
99293764 C
1 C
99293765 TGACTCAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 2 0.07
31 27 0.93
ACGTcount: A:0.29, C:0.17, G:0.08, T:0.46
Consensus pattern (30 bp):
CCTATACTTTTCAAATTGTTAAATTTAGTC
Found at i:99295315 original size:27 final size:27
Alignment explanation
Indices: 99295279--99295330 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
99295269 ACATGTTGCA
* *
99295279 CCTATCTGACAGGCTCAACTAGTTGAG
1 CCTATCTGACAAGCACAACTAGTTGAG
* *
99295306 CCTATTTGACAAGCACGACTAGTTG
1 CCTATCTGACAAGCACAACTAGTTG
99295331 TGTCTTCTTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (27 bp):
CCTATCTGACAAGCACAACTAGTTGAG
Found at i:99299220 original size:22 final size:24
Alignment explanation
Indices: 99299195--99299244 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 24
99299185 ACAGATACAC
*
99299195 GAATTTCC-ACCCAAACACA-CCA
1 GAATGTCCAACCCAAACACACCCA
99299217 GAATGTCCAACCCAAACACACCCA
1 GAATGTCCAACCCAAACACACCCA
99299241 GAAT
1 GAAT
99299245 ATTTTAAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 7 0.28
23 11 0.44
24 7 0.28
ACGTcount: A:0.42, C:0.38, G:0.08, T:0.12
Consensus pattern (24 bp):
GAATGTCCAACCCAAACACACCCA
Found at i:99300255 original size:12 final size:12
Alignment explanation
Indices: 99300240--99300270 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
99300230 TTCTCTTTTA
99300240 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
99300252 TTTTTCTTTCTC
1 TTTTTCTTTCCC
99300264 TTTTTCT
1 TTTTTCT
99300271 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:99300665 original size:15 final size:14
Alignment explanation
Indices: 99300647--99300677 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
99300637 TTAATTTATT
99300647 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
99300662 TAATAATAATCTAA
1 TAATAATAATCTAA
99300676 TA
1 TA
99300678 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:99300688 original size:21 final size:20
Alignment explanation
Indices: 99300664--99300732 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
99300654 AATGCTAATA
99300664 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
99300685 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
99300704 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
99300725 ATAATAAT
1 ATAATAAT
99300733 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:99303903 original size:22 final size:22
Alignment explanation
Indices: 99303869--99303932 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
99303859 TCAACATTTT
*
99303869 AATAAATCA-ATAAAAATTATCA
1 AATAAAT-ATATAAAAATTATAA
*
99303891 AATAAATATATAATAA-TATAA
1 AATAAATATATAAAAATTATAA
*
99303912 AATTACATTATATAAAAATTA
1 AA-TA-AATATATAAAAATTA
99303933 CATTAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.21
22 15 0.44
23 10 0.29
24 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAATATATAAAAATTATAA
Found at i:99303926 original size:15 final size:16
Alignment explanation
Indices: 99303906--99303937 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
99303896 ATATATAATA
99303906 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
99303921 ATATAAAAATTACATT
1 ATATAAAAATTACATT
99303937 A
1 A
99303938 AAAAATCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:99304196 original size:8 final size:10
Alignment explanation
Indices: 99304164--99304202 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
99304154 AATTCACAAT
99304164 ACACTAATAC
1 ACACTAATAC
99304174 ACACTAATAC
1 ACACTAATAC
99304184 ACACTAA-AC
1 ACACTAATAC
99304193 -CACTAA-AC
1 ACACTAATAC
99304201 AC
1 AC
99304203 TAACAATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.29
9 3 0.11
10 17 0.61
ACGTcount: A:0.51, C:0.33, G:0.00, T:0.15
Consensus pattern (10 bp):
ACACTAATAC
Found at i:99304342 original size:240 final size:227
Alignment explanation
Indices: 99303994--99304563 Score: 847
Period size: 240 Copynumber: 2.4 Consensus size: 227
99303984 ATACTAACAC
* * *
99303994 AAAATAACTATAAAATTATTTTTTTAAATACATTACTAAAAAAAAATTCACAATACACTAATACA
1 AAAATAGCTATAAAAATATTTTTTTAAATATATTACT--AAAAAAA-TCACAATACACTAAT--A
* *
99304059 CACTAAACCACTAAACACTAACAA--TATATAACCTAATCTTAAATTACTAATAAAATAGCTATA
61 CACTAAACCACTAAACACTAACAATTTATATAACCTAACCTTAAATTACTAATAAAATAGCTACA
99304122 AAAATATTTTTTTAAAATATATTACTAAAAAAAATTCACAATACACTAATACACACTAATACACA
126 AAAATATTTTTTTAAAATATATTACT-AAAAAAATT-ACAATACACTAAT--ACACTAA-AC-CA
99304187 CTAAACCACTAAACACTAACAATATATAACCTAATCTTAAATTACTAAT
185 CTAAA-CACT--A-AC-AA-AATATATAACCTAATCTTAAATTACTAAT
*
99304236 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCGCAATACACTAATACACT
1 AAAATAGCTATAAAAATATTTTTTT-AAATATATTACTAAAAAAATCACAATACACTAATACACT
99304301 AAACCACTAAACACTAACAATTTATATAACCTAACCTTAAATTACTAATAAAATAGCTACAAAAA
65 AAACCACTAAACACTAACAATTTATATAACCTAACCTTAAATTACTAATAAAATAGCTACAAAAA
*
99304366 TATTTTTTTAAAATATATTACTAAAAAAATTACAATATACTAATACACTAAACCACTAAACACTA
130 TATTTTTTTAAAATATATTACTAAAAAAATTACAATACACTAATACACTAAACCACTAAACACTA
**
99304431 ACAATTTATATAACCTAATCTTAAATTACTAAT
195 ACAAAATATATAACCTAATCTTAAATTACTAAT
99304464 AAAATAGCTATAAAAATATTATTTTTTAAATATATTACTAAAAAAATCACAATACACTAATACAC
1 AAAATAGCTATAAAAATA-T-TTTTTTAAATATATTACTAAAAAAATCACAATACACTAATACAC
* *
99304529 TAAACTACTAAACACTAACAATTTATATAATCTAA
64 TAAACCACTAAACACTAACAATTTATATAACCTAA
99304564 TCAACTATAA
Statistics
Matches: 311, Mismatches: 12, Indels: 23
0.90 0.03 0.07
Matches are distributed among these distances:
228 45 0.14
229 73 0.23
230 8 0.03
231 1 0.00
233 4 0.01
234 7 0.02
235 2 0.01
236 7 0.02
238 37 0.12
239 9 0.03
240 77 0.25
241 7 0.02
242 23 0.07
243 11 0.04
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.31
Consensus pattern (227 bp):
AAAATAGCTATAAAAATATTTTTTTAAATATATTACTAAAAAAATCACAATACACTAATACACTA
AACCACTAAACACTAACAATTTATATAACCTAACCTTAAATTACTAATAAAATAGCTACAAAAAT
ATTTTTTTAAAATATATTACTAAAAAAATTACAATACACTAATACACTAAACCACTAAACACTAA
CAAAATATATAACCTAATCTTAAATTACTAAT
Found at i:99304564 original size:115 final size:114
Alignment explanation
Indices: 99304174--99304565 Score: 671
Period size: 114 Copynumber: 3.4 Consensus size: 114
99304164 ACACTAATAC
99304174 ACACTAATACACACTAAACCACTAAACACTAACAA--TATATAACCTAATCTTAAATTACTAATA
1 ACACTAAT--ACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATA
*
99304237 AAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCGCAAT
64 AAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAAT
*
99304288 ACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAACCTTAAATTACTAATAAA
1 ACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAA
* *
99304353 ATAGCTACAAAAATATTTTTTTAAAATATATTACTAAAAAAATTACAAT
66 ATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAAT
*
99304402 ATACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAA
1 ACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAA
*
99304467 ATAGCTATAAAAATATTATTTTTTAAATATATTACTAAAAAAATCACAAT
66 ATAGCTATAAAAATATT-TTTTTAAAATATATTACTAAAAAAATCACAAT
* *
99304517 ACACTAATACACTAAACTACTAAACACTAACAATTTATATAATCTAATC
1 ACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATC
99304566 AACTATAAAA
Statistics
Matches: 263, Mismatches: 12, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
112 25 0.10
114 162 0.62
115 76 0.29
ACGTcount: A:0.51, C:0.17, G:0.01, T:0.31
Consensus pattern (114 bp):
ACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAA
ATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAAT
Found at i:99304638 original size:91 final size:94
Alignment explanation
Indices: 99304471--99304643 Score: 248
Period size: 99 Copynumber: 1.8 Consensus size: 94
99304461 AATAAAATAG
*
99304471 CTATAAAAATATTATTTTTTAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACTA
1 CTATAAAAATATTATTTTTAAAATATATTACTAAAAAAATCACAATACAC--ATACACT-AACTA
99304536 CTAAACACTAACAATTTATATAATCTAATCAA
63 CTAAACACTAACAATTTATATAATCTAATCAA
*
99304568 CTATAAAATTATTATTTTTAAATATATTATTACTAAAAAAATCACAATACAC-TA-A-T-AC-AC
1 CTATAAAAATATTATTTTTAAA-ATA-TATTACTAAAAAAATCACAATACACATACACTAACTAC
99304628 TAAACACTAACAATTT
64 TAAACACTAACAATTT
99304644 GTAACCTAAT
Statistics
Matches: 72, Mismatches: 2, Indels: 10
0.86 0.02 0.12
Matches are distributed among these distances:
91 18 0.25
92 2 0.03
94 1 0.01
95 1 0.01
96 2 0.03
97 20 0.28
98 3 0.04
99 25 0.35
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (94 bp):
CTATAAAAATATTATTTTTAAAATATATTACTAAAAAAATCACAATACACATACACTAACTACTA
AACACTAACAATTTATATAATCTAATCAA
Found at i:99304860 original size:16 final size:16
Alignment explanation
Indices: 99304839--99304869 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
99304829 CTTTTTTTTT
*
99304839 TTCTTCTTCTTCTTCC
1 TTCTTCTTCTCCTTCC
99304855 TTCTTCTTCTCCTTC
1 TTCTTCTTCTCCTTC
99304870 TCCTTTCTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (16 bp):
TTCTTCTTCTCCTTCC
Found at i:99305407 original size:15 final size:15
Alignment explanation
Indices: 99305383--99305412 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
99305373 TATGGTATTG
*
99305383 AATTGCATTGAATTA
1 AATTGAATTGAATTA
99305398 AATTGAATTGAATTA
1 AATTGAATTGAATTA
99305413 TGAATATATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.03, G:0.13, T:0.40
Consensus pattern (15 bp):
AATTGAATTGAATTA
Found at i:99307113 original size:31 final size:30
Alignment explanation
Indices: 99307056--99307115 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 30
99307046 TTTTAATTCC
*
99307056 TATACTTTTCAAATTGGTTAATTTTAGTCCT
1 TATACTTTTCAAATT-GTTAAATTTAGTCCT
99307087 TATACTTTTCAAAATT-TTAAAATTTAGTC
1 TATACTTTTC-AAATTGTT-AAATTTAGTC
99307116 ATGACCCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 2 0.08
31 19 0.73
32 5 0.19
ACGTcount: A:0.32, C:0.12, G:0.07, T:0.50
Consensus pattern (30 bp):
TATACTTTTCAAATTGTTAAATTTAGTCCT
Found at i:99308411 original size:30 final size:30
Alignment explanation
Indices: 99308324--99308412 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
99308314 TTTATTTCTG
* * *
99308324 TATAAATTAAA-TGTTAAGGGCTTATTTGAA
1 TATAAATTAAAGT-TTAAAGGATTATTTGGA
*
99308354 TATAAATTAAAGGTT-AAGGATTTATTTGGA
1 TATAAATTAAAGTTTAAAGGA-TTATTTGGA
*
99308384 TATCAATTAAAGTTTAAAGGATTATTTGG
1 TATAAATTAAAGTTTAAAGGATTATTTGG
99308413 GTGTAATAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
29 3 0.06
30 42 0.84
31 5 0.10
ACGTcount: A:0.39, C:0.02, G:0.18, T:0.40
Consensus pattern (30 bp):
TATAAATTAAAGTTTAAAGGATTATTTGGA
Found at i:99308821 original size:21 final size:23
Alignment explanation
Indices: 99308796--99308846 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 23
99308786 TAATATGATT
*
99308796 AAATT-TTTTAATTAAT-TAAAA
1 AAATTATTATAATTAATATAAAA
*
99308817 AAATTATTATATTTAATGATAAAA
1 AAATTATTATAATTAAT-ATAAAA
99308841 AAATTA
1 AAATTA
99308847 ATGGGTTAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 5 0.20
22 9 0.36
24 11 0.44
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (23 bp):
AAATTATTATAATTAATATAAAA
Found at i:99329794 original size:21 final size:22
Alignment explanation
Indices: 99329761--99329802 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
99329751 AGATAAAGCA
99329761 AGGGAAATAGAAGGAAAAGAGG
1 AGGGAAATAGAAGGAAAAGAGG
* *
99329783 AGGG-AATCGAAGGGAAAGAG
1 AGGGAAATAGAAGGAAAAGAG
99329803 ATCAAAAGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.50, C:0.02, G:0.43, T:0.05
Consensus pattern (22 bp):
AGGGAAATAGAAGGAAAAGAGG
Found at i:99331407 original size:20 final size:20
Alignment explanation
Indices: 99331382--99331419 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
99331372 GAGAATGATT
99331382 CTATAAATAATGTTGAAATC
1 CTATAAATAATGTTGAAATC
99331402 CTATAAATAATGTTGAAA
1 CTATAAATAATGTTGAAA
99331420 CTCTGTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.34
Consensus pattern (20 bp):
CTATAAATAATGTTGAAATC
Found at i:99333881 original size:26 final size:28
Alignment explanation
Indices: 99333852--99333907 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 28
99333842 TTTTTACAAC
99333852 TTCAATGTTAAT-AAACATAT-TATTTA
1 TTCAATGTTAATAAAACATATATATTTA
* * *
99333878 TTCAGTTTTAATAAAATATATATATTTA
1 TTCAATGTTAATAAAACATATATATTTA
99333906 TT
1 TT
99333908 TGGGTAACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.40
27 7 0.28
28 8 0.32
ACGTcount: A:0.41, C:0.05, G:0.04, T:0.50
Consensus pattern (28 bp):
TTCAATGTTAATAAAACATATATATTTA
Found at i:99334694 original size:88 final size:89
Alignment explanation
Indices: 99334544--99334723 Score: 292
Period size: 88 Copynumber: 2.0 Consensus size: 89
99334534 GCTTAATTCT
* * *
99334544 TAAATAATTCATCATCTTTCTATGTGTTCCAAAACATAATTAGAACTTGCATGACTTCTAATGAC
1 TAAATAATTCATCATCTTTCTATGTATTCCAAAACATAATTAGAACCTGCATGACTTATAATGAC
99334609 GA-TTTCCCCCCGC-AGTTCCTAAG
66 GACTTTCCCCCC-CAAGTTCCTAAG
*
99334632 TAAATAATTCATCATCTTTCTATGTATTTCAAAACATAATTAGAACCTGCATGACTTATAATGAC
1 TAAATAATTCATCATCTTTCTATGTATTCCAAAACATAATTAGAACCTGCATGACTTATAATGAC
99334697 GACTTTTCCCCCCCAAGTTCCTAAG
66 GAC-TTTCCCCCCCAAGTTCCTAAG
99334722 TA
1 TA
99334724 TGTTTATTTG
Statistics
Matches: 85, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
88 63 0.74
89 1 0.01
90 21 0.25
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.34
Consensus pattern (89 bp):
TAAATAATTCATCATCTTTCTATGTATTCCAAAACATAATTAGAACCTGCATGACTTATAATGAC
GACTTTCCCCCCCAAGTTCCTAAG
Found at i:99339242 original size:19 final size:19
Alignment explanation
Indices: 99339214--99339251 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
99339204 TAAGCTCCTC
*
99339214 GTGCTTTTTTGAAATCCAT
1 GTGCTCTTTTGAAATCCAT
99339233 GTGCTCTTTTGAAATCCAT
1 GTGCTCTTTTGAAATCCAT
99339252 AAAGTATGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.18, G:0.16, T:0.45
Consensus pattern (19 bp):
GTGCTCTTTTGAAATCCAT
Found at i:99343554 original size:4 final size:4
Alignment explanation
Indices: 99343547--99343589 Score: 86
Period size: 4 Copynumber: 10.8 Consensus size: 4
99343537 CATACATACA
99343547 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
99343590 AAACTCCTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:99347184 original size:33 final size:33
Alignment explanation
Indices: 99347146--99347242 Score: 149
Period size: 33 Copynumber: 2.9 Consensus size: 33
99347136 GACTGAGTGG
* *
99347146 GAGTGTTTGGTTGCTGGACATGAGCTGGAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
*
99347179 GAGTGTTTTGCTGCTGGACAGGAGCTGGAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
* *
99347212 GGGTGTTTTGTTGCTAGACAGGAGCTGGAAT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAAT
99347243 ATCAAGAAGA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.19, C:0.10, G:0.39, T:0.32
Consensus pattern (33 bp):
GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
Found at i:99349936 original size:17 final size:18
Alignment explanation
Indices: 99349914--99349949 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
99349904 GATATGATAC
*
99349914 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
99349931 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
99349949 T
1 T
99349950 TAAGAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:99350275 original size:18 final size:19
Alignment explanation
Indices: 99350215--99350289 Score: 107
Period size: 19 Copynumber: 3.9 Consensus size: 19
99350205 AAATTAAATC
* *
99350215 TCTAAGATTACAAAATCATG
1 TCTAAGATTGC-ATATCATG
99350235 TCTAAGATTGCATATCATG
1 TCTAAGATTGCATATCATG
*
99350254 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATG
99350272 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
99350290 TGAAGATTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
18 17 0.33
19 24 0.47
20 10 0.20
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (19 bp):
TCTAAGATTGCATATCATG
Found at i:99350445 original size:21 final size:20
Alignment explanation
Indices: 99350408--99350446 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
99350398 TTGGACTTCG
**
99350408 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
99350428 TTTTCTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
99350447 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.05, G:0.13, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:99350703 original size:45 final size:45
Alignment explanation
Indices: 99350639--99350838 Score: 226
Period size: 45 Copynumber: 4.5 Consensus size: 45
99350629 AGAAGGCGAT
* *
99350639 ATCTGCTATCTTTGATCTGCTCC-CTGTCTAATACAAAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCTC-GTCTAATACAAAGACGCCAA
* * *
99350684 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAA
1 ATCTGTTATCTTCGATCTGCTCCTCGTCTAATACAAAGACGCCAA
* * * *
99350729 ATCTGCT-TCTTCAATCTGCTCCTCATCTAATACAAAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCTCGTCTAATACAAAGACGCCAA
* * * *
99350773 ATATGTTATC-TCTAATTTGCTCCTCGTCTAATACAAAGATGCCAA
1 ATCTGTTATCTTC-GATCTGCTCCTCGTCTAATACAAAGACGCCAA
* *
99350818 ATCTGTCATCTTGGATCTGCT
1 ATCTGTTATCTTCGATCTGCT
99350839 TTGATGTAAA
Statistics
Matches: 131, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
44 38 0.29
45 91 0.69
46 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCTCGTCTAATACAAAGACGCCAA
Found at i:99350804 original size:89 final size:90
Alignment explanation
Indices: 99350639--99350822 Score: 230
Period size: 89 Copynumber: 2.1 Consensus size: 90
99350629 AGAAGGCGAT
** * * *
99350639 ATCTGCTATCTTTGATCTGCTCCCTGTCTAATACAAAGACGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCTATCTTCAATCTGCTCCCTATCTAATACAAAGACGCCAAATATGTTATCTTCAATCTGC
*
99350704 TCCCCGTCTAATACAGAGACACCAA
66 TCCCCGTCTAATACAAAGACACCAA
* *
99350729 ATCTGCT-TCTTCAATCTGCT-CCTCATCTAATACAAAGATGCCAAATATGTTATC-TCTAATTT
1 ATCTGCTATCTTCAATCTGCTCCCT-ATCTAATACAAAGACGCCAAATATGTTATCTTC-AATCT
* **
99350791 GCTCCTCGTCTAATACAAAGATGCCAA
64 GCTCCCCGTCTAATACAAAGACACCAA
99350818 ATCTG
1 ATCTG
99350823 TCATCTTGGA
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
88 5 0.06
89 69 0.85
90 7 0.09
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTGCTCCCTATCTAATACAAAGACGCCAAATATGTTATCTTCAATCTGC
TCCCCGTCTAATACAAAGACACCAA
Found at i:99351078 original size:78 final size:78
Alignment explanation
Indices: 99350852--99351145 Score: 457
Period size: 78 Copynumber: 3.8 Consensus size: 78
99350842 ATGTAAACAC
* *
99350852 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTTCCTGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
99350917 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
99350930 ATGAAGGTCCA-ATCTGTTA-GTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
99350993 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
99351007 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTTATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
**
99351072 TGGATCTAATTCA
66 TGGATCTGCTTCA
* * **
99351085 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
99351146 TGTTTCTTTG
Statistics
Matches: 197, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
76 2 0.01
77 69 0.35
78 124 0.63
79 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:99357339 original size:21 final size:21
Alignment explanation
Indices: 99357314--99357382 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
99357304 TATAATGATT
99357314 ATTATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
**
99357335 ATTATTATAATTATTA-ATT-A
1 ATTATTATGGTT-TTATATTAA
* *
99357355 A-CATTATGGTTTTATATTAG
1 ATTATTATGGTTTTATATTAA
99357375 ATTATTAT
1 ATTATTAT
99357383 TATTAGCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 10 0.27
20 3 0.08
21 18 0.49
22 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.55
Consensus pattern (21 bp):
ATTATTATGGTTTTATATTAA
Found at i:99357395 original size:15 final size:14
Alignment explanation
Indices: 99357369--99357399 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
99357359 TATGGTTTTA
99357369 TATTAGATTATTAT
1 TATTAGATTATTAT
99357383 TATTAGCATTATTAT
1 TATTAG-ATTATTAT
99357398 TA
1 TA
99357400 AATAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTAGATTATTAT
Found at i:99365692 original size:17 final size:17
Alignment explanation
Indices: 99365670--99365702 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
99365660 GATATGATAC
99365670 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
99365687 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
99365703 AATCCGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:99365703 original size:18 final size:17
Alignment explanation
Indices: 99365670--99365703 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
99365660 GATATGATAC
*
99365670 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
99365687 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
99365704 ATCCGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:99366019 original size:19 final size:19
Alignment explanation
Indices: 99365995--99366066 Score: 105
Period size: 19 Copynumber: 3.9 Consensus size: 19
99365985 AATCATATCT
*
99365995 TCTAAGATTGCATATCATG
1 TCTAAGATTGCATATCATA
99366014 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
99366032 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
99366049 TCTAAGATTACATATCAT
1 TCTAAGATTGCATATCAT
99366067 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
17 15 0.31
18 15 0.31
19 18 0.38
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:99366035 original size:18 final size:18
Alignment explanation
Indices: 99365995--99366057 Score: 92
Period size: 17 Copynumber: 3.5 Consensus size: 18
99365985 AATCATATCT
*
99365995 TCTAAGATTGCATATCATG
1 TCTAAGATTGCA-ATCATA
99366014 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
99366032 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
99366049 TCTAAGATT
1 TCTAAGATT
99366058 ACATATCATT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
17 15 0.36
18 15 0.36
19 12 0.29
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:99367897 original size:26 final size:26
Alignment explanation
Indices: 99367868--99367921 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
99367858 AGAAGTCTGC
* *
99367868 ATGTATGTTTTGGTCCTACTAACCCA
1 ATGTATGTTTCGATCCTACTAACCCA
99367894 ATGTATGTTTCGATCCTACTAACCCA
1 ATGTATGTTTCGATCCTACTAACCCA
99367920 AT
1 AT
99367922 CCCATATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (26 bp):
ATGTATGTTTCGATCCTACTAACCCA
Found at i:99369953 original size:13 final size:13
Alignment explanation
Indices: 99369902--99369954 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
99369892 AGTTTGGCAA
*
99369902 TGCTTTTGAAAAA
1 TGCTTTTGAAAAG
*
99369915 TGCTCTTGAAAAG
1 TGCTTTTGAAAAG
*
99369928 TGC-TGTGAAAAAG
1 TGCTTTTG-AAAAG
99369941 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
99369954 T
1 T
99369955 TTGGTTTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
12 2 0.06
13 28 0.85
14 3 0.09
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:99371360 original size:17 final size:18
Alignment explanation
Indices: 99371340--99371373 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
99371330 TTTTAAGTGA
99371340 TTTTAACT-TTTAAAATG
1 TTTTAACTATTTAAAATG
*
99371357 TTTTAATTATTTAAAAT
1 TTTTAACTATTTAAAAT
99371374 TATATTACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTTAACTATTTAAAATG
Found at i:99371579 original size:31 final size:29
Alignment explanation
Indices: 99371544--99371603 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 29
99371534 CTCAAAATTC
* *
99371544 TACATAAACTTTGATTTAATGTACAATTATA
1 TACATAAACTTTAATTT--GGTACAATTATA
*
99371575 TACATGAACTTTAATTTGGTACAATTATA
1 TACATAAACTTTAATTTGGTACAATTATA
99371604 CATGCGAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 11 0.42
31 15 0.58
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (29 bp):
TACATAAACTTTAATTTGGTACAATTATA
Found at i:99372590 original size:107 final size:107
Alignment explanation
Indices: 99372462--99372660 Score: 364
Period size: 107 Copynumber: 1.9 Consensus size: 107
99372452 GTTTTTTTAA
*
99372462 AATGATATTTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCTAACAAAATTGTATTAAAATTT
1 AATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCTAACAAAATTGTATTAAAATTT
99372527 TTGTTAATTAC-CTTGATAAAATTTTTGTTTAGTTAACAAAAC
66 TTGTTAATTACTC-TGATAAAATTTTTGTTTAGTTAACAAAAC
*
99372569 AATGATATGTTAAGTTGGAATAAGTTTTAAATAATAAAATTTCTAACAAAATTGTATTAAAATTT
1 AATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCTAACAAAATTGTATTAAAATTT
99372634 TTGTTAATTACTCTGATAAAATTTTTG
66 TTGTTAATTACTCTGATAAAATTTTTG
99372661 AAGTGTTTTT
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
107 88 0.99
108 1 0.01
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.43
Consensus pattern (107 bp):
AATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCTAACAAAATTGTATTAAAATTT
TTGTTAATTACTCTGATAAAATTTTTGTTTAGTTAACAAAAC
Found at i:99375579 original size:21 final size:21
Alignment explanation
Indices: 99375553--99375596 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
99375543 CAGATAGTCT
*
99375553 AATGTGTGATTCGATGATGTC
1 AATGTGTGATTCAATGATGTC
99375574 AATGTGTGATTCAATGATGTC
1 AATGTGTGATTCAATGATGTC
99375595 AA
1 AA
99375597 GATGAGTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.09, G:0.25, T:0.36
Consensus pattern (21 bp):
AATGTGTGATTCAATGATGTC
Done.