Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 308 of 325
Found at i:99985898 original size:30 final size:30
Alignment explanation
Indices: 99985790--99985934 Score: 143
Period size: 30 Copynumber: 4.8 Consensus size: 30
99985780 ACTTTTCTCA
* *
99985790 ACTAGCCACACCTT-TTCCACCACCAACTTC
1 ACTAGCCACA-CTTGCTCCACCACCAACTCC
* *
99985820 ACTAGCCACTCCTT-TTCCACCACCAACTCC
1 ACTAGCCAC-ACTTGCTCCACCACCAACTCC
*
99985850 ACTAGCCACACCTT-CTCCACCACCAAATCC
1 ACTAGCCACA-CTTGCTCCACCACCAACTCC
* ** *
99985880 ACTAGTCACACTTGCTCCATTACCTACTCC
1 ACTAGCCACACTTGCTCCACCACCAACTCC
* *
99985910 ACTAACCACACTTGCTCCATCACCA
1 ACTAGCCACACTTGCTCCACCACCA
99985935 CTTGTACCTA
Statistics
Matches: 98, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
29 3 0.03
30 95 0.97
ACGTcount: A:0.27, C:0.46, G:0.04, T:0.23
Consensus pattern (30 bp):
ACTAGCCACACTTGCTCCACCACCAACTCC
Found at i:99985909 original size:60 final size:60
Alignment explanation
Indices: 99985790--99985934 Score: 159
Period size: 60 Copynumber: 2.4 Consensus size: 60
99985780 ACTTTTCTCA
* * * * *
99985790 ACTAGCCACACCTTTTCCACCACCAACTTCACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAAATCCACTAGCCACTACTTCTCCACCACCAACTCC
* ** *
99985850 ACTAGCCACACCTTCTCCACCACCAAATCCACTAGTCAC-ACTTGCTCCATTACCTACTCC
1 ACTAGCCACACCTTCTCCACCACCAAATCCACTAGCCACTACTT-CTCCACCACCAACTCC
* *
99985910 ACTAACCACA-CTTGCTCCATCACCA
1 ACTAGCCACACCTT-CTCCACCACCA
99985935 CTTGTACCTA
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
59 6 0.08
60 66 0.92
ACGTcount: A:0.27, C:0.46, G:0.04, T:0.23
Consensus pattern (60 bp):
ACTAGCCACACCTTCTCCACCACCAAATCCACTAGCCACTACTTCTCCACCACCAACTCC
Found at i:99986530 original size:25 final size:25
Alignment explanation
Indices: 99986502--99986560 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
99986492 ATATTACGTA
* *
99986502 TATATATATTTTATACTATTTTATG
1 TATATATATTTAATACTATCTTATG
* * *
99986527 TATATATCTTTAATATTATCTTATT
1 TATATATATTTAATACTATCTTATG
99986552 TATATATAT
1 TATATATAT
99986561 ATATATTTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (25 bp):
TATATATATTTAATACTATCTTATG
Found at i:99986532 original size:29 final size:29
Alignment explanation
Indices: 99986500--99986613 Score: 76
Period size: 29 Copynumber: 4.0 Consensus size: 29
99986490 CTATATTACG
99986500 TATATATATATTTTATACTATTTTATGTA
1 TATATATATATTTTATACTATTTTATGTA
* * * *
99986529 TATATCTTTAATATTAT-CT-TATTTATATA
1 TATATATAT-ATTTTATACTAT-TTTATGTA
* * * *
99986558 TATATATATTTTTTCTAC-ATGTTATCT-
1 TATATATATATTTTATACTATTTTATGTA
* * *
99986585 TATGTATATATCTTA-ACTATATTATGTA
1 TATATATATATTTTATACTATTTTATGTA
99986613 T
1 T
99986614 GTATTTTTAA
Statistics
Matches: 62, Mismatches: 17, Indels: 13
0.67 0.18 0.14
Matches are distributed among these distances:
26 2 0.03
27 18 0.29
28 11 0.18
29 25 0.40
30 6 0.10
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.57
Consensus pattern (29 bp):
TATATATATATTTTATACTATTTTATGTA
Found at i:99986612 original size:22 final size:24
Alignment explanation
Indices: 99986584--99986642 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
99986574 ACATGTTATC
99986584 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
99986606 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
99986631 TTATGTACATAT
1 TTATGTATATAT
99986643 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:99986632 original size:25 final size:25
Alignment explanation
Indices: 99986600--99986648 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
99986590 ATATATCTTA
**
99986600 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
99986625 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
99986649 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:99986828 original size:16 final size:15
Alignment explanation
Indices: 99986804--99986851 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
99986794 TAATTATTAT
*
99986804 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
*
99986820 TATTTTAATATATTA
1 TATTTTAATATTTTA
*
99986835 TATATTATATATTTTA
1 TATTTTA-ATATTTTA
99986851 T
1 T
99986852 TATTCACATC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 7 0.26
16 20 0.74
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:99989678 original size:26 final size:26
Alignment explanation
Indices: 99989602--99989685 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
99989592 CATGAAATTC
* *
99989602 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
99989628 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
99989654 TTATCATGGAACATTTACCTAACCTT
1 TTATCATGGAACATTTACCTAACCTA
99989680 TTATCA
1 TTATCA
99989686 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.36
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:99993903 original size:25 final size:27
Alignment explanation
Indices: 99993866--99993918 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
99993856 TCAAACATGC
99993866 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
99993892 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
99993918 A
1 A
99993919 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:99995471 original size:26 final size:26
Alignment explanation
Indices: 99995395--99995478 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
99995385 CATGAAATTC
* *
99995395 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
99995421 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
99995447 TTATCATGGAACATTTACCTAACCTT
1 TTATCATGGAACATTTACCTAACCTA
99995473 TTATCA
1 TTATCA
99995479 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.36
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:99998901 original size:22 final size:22
Alignment explanation
Indices: 99998851--99998894 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
99998841 GGTCCTCTCG
99998851 CAATTT-TTATATTTTTTAATTT
1 CAATTTATT-TATTTTTTAATTT
99998873 CAATTTATTTATTTTTTAATTT
1 CAATTTATTTATTTTTTAATTT
99998895 AGCTTTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 19 0.90
23 2 0.10
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (22 bp):
CAATTTATTTATTTTTTAATTT
Found at i:99999131 original size:22 final size:22
Alignment explanation
Indices: 99999096--99999141 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
99999086 AAATTTAACC
**
99999096 ATATATATTTATTTCTATTATT
1 ATATATATAAATTTCTATTATT
* *
99999118 ATATATATAAATTTTTATTGTT
1 ATATATATAAATTTCTATTATT
99999140 AT
1 AT
99999142 TTGCTTTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
ATATATATAAATTTCTATTATT
Found at i:99999173 original size:7 final size:7
Alignment explanation
Indices: 99999163--99999259 Score: 67
Period size: 7 Copynumber: 13.3 Consensus size: 7
99999153 TTATTTTTAA
99999163 ATTATAT
1 ATTATAT
99999170 ATTATAT
1 ATTATAT
99999177 GATTAT-T
1 -ATTATAT
99999184 -TTATAT
1 ATTATAT
99999190 ATTACTCAT
1 ATTA-T-AT
*
99999199 ATTATTT
1 ATTATAT
99999206 A-TATAT
1 ATTATAT
99999212 ATTATAT
1 ATTATAT
*
99999219 ATTATTTT
1 ATTA-TAT
*
99999227 CACATATAT
1 -A-TTATAT
99999236 ACTT-TCAT
1 A-TTAT-AT
99999244 ATTATAT
1 ATTATAT
99999251 ATTATAT
1 ATTATAT
99999258 AT
1 AT
99999260 ATTTTATATT
Statistics
Matches: 73, Mismatches: 6, Indels: 22
0.72 0.06 0.22
Matches are distributed among these distances:
5 4 0.05
6 6 0.08
7 36 0.49
8 16 0.22
9 9 0.12
10 2 0.03
ACGTcount: A:0.37, C:0.06, G:0.01, T:0.56
Consensus pattern (7 bp):
ATTATAT
Found at i:99999189 original size:20 final size:19
Alignment explanation
Indices: 99999164--99999274 Score: 111
Period size: 20 Copynumber: 5.6 Consensus size: 19
99999154 TATTTTTAAA
99999164 TTATATATTATATGATTATT
1 TTATATATTATAT-ATTATT
99999184 TTATATATTACTCATATTATT
1 TTATATATTA-T-ATATTATT
99999205 TATATATATTATATATTATT
1 T-TATATATTATATATTATT
* *
99999225 TTCACATA-TATACT-TTCATA
1 TT-ATATATTATA-TATT-ATT
99999245 TTATATATTATATA-TATT
1 TTATATATTATATATTATT
99999263 TTATATTATTAT
1 TTATA-TATTAT
99999275 GTCATTTTAT
Statistics
Matches: 78, Mismatches: 4, Indels: 19
0.77 0.04 0.19
Matches are distributed among these distances:
18 7 0.09
19 19 0.24
20 32 0.41
21 9 0.12
22 11 0.14
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.58
Consensus pattern (19 bp):
TTATATATTATATATTATT
Found at i:99999203 original size:29 final size:26
Alignment explanation
Indices: 99999153--99999223 Score: 72
Period size: 29 Copynumber: 2.6 Consensus size: 26
99999143 TGCTTTATTT
*
99999153 TTATTTT-TAAATTATATATTATATGA
1 TTATTTTATATATTATATATTAT-TGA
*
99999179 TTATTTTATATATTACTCATATTATTTA
1 TTATTTTATATATTA-T-ATATTATTGA
*
99999207 TATATATTATATATTAT
1 T-TATTTTATATATTAT
99999224 TTTCACATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
26 7 0.18
27 6 0.16
28 5 0.13
29 20 0.53
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (26 bp):
TTATTTTATATATTATATATTATTGA
Found at i:99999267 original size:16 final size:17
Alignment explanation
Indices: 99999242--99999299 Score: 64
Period size: 18 Copynumber: 3.4 Consensus size: 17
99999232 ATATACTTTC
*
99999242 ATATTATATATTA-TAT
1 ATATTTTATATTATTAT
99999258 ATATTTTATATTATTAT
1 ATATTTTATATTATTAT
* * *
99999275 GTCATTTTATACTATTAA
1 AT-ATTTTATATTATTAT
99999293 ATATTTT
1 ATATTTT
99999300 TATCTACATA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
16 12 0.34
17 9 0.26
18 14 0.40
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (17 bp):
ATATTTTATATTATTAT
Found at i:99999268 original size:18 final size:18
Alignment explanation
Indices: 99999164--99999302 Score: 95
Period size: 20 Copynumber: 7.2 Consensus size: 18
99999154 TATTTTTAAA
99999164 TTATATATTATATGATTATT
1 TTATATATTATAT-A-TATT
99999184 TTATATATTACTCATATTATT
1 TTATATATTA-T-ATA-TATT
99999205 TATATATATTATATATTATT
1 T-TATATATTATATA-TATT
* * *
99999225 TTCACATA-TATACTTTCATA
1 TT-ATATATTATA-TAT-ATT
99999245 TTATATATTATATATATT
1 TTATATATTATATATATT
* *
99999263 TTATATTATTATGT-CATT
1 TTATA-TATTATATATATT
*
99999281 TTATACTATTAAATAT-TT
1 TTATA-TATTATATATATT
99999299 TTAT
1 TTAT
99999303 CTACATATTG
Statistics
Matches: 98, Mismatches: 12, Indels: 20
0.75 0.09 0.15
Matches are distributed among these distances:
18 27 0.28
19 19 0.19
20 32 0.33
21 9 0.09
22 11 0.11
ACGTcount: A:0.35, C:0.06, G:0.01, T:0.58
Consensus pattern (18 bp):
TTATATATTATATATATT
Found at i:99999623 original size:17 final size:17
Alignment explanation
Indices: 99999566--99999623 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
99999556 TCTAAACCAT
* *
99999566 TATATTTTATGTTTTTA
1 TATATTATATATTTTTA
*
99999583 TATAATTAT-TATTCTTA
1 TAT-ATTATATATTTTTA
99999600 TA-A--ATATATTTTTA
1 TATATTATATATTTTTA
99999614 TATATTATAT
1 TATATTATAT
99999624 CATTAAATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 10
0.70 0.09 0.22
Matches are distributed among these distances:
13 2 0.06
14 9 0.28
15 2 0.06
17 15 0.47
18 4 0.12
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (17 bp):
TATATTATATATTTTTA
Found at i:100011793 original size:205 final size:205
Alignment explanation
Indices: 100011426--100011937 Score: 785
Period size: 205 Copynumber: 2.5 Consensus size: 205
100011416 GTAGGCCGCA
* * *
100011426 GCATAGCAGATCTCACCTTCAGATGTTTATACTGAAGAAGATCCAAGATGATTTGGCATCCTTGT
1 GCATAGCAGATCTCACATTCAGATGTTTATACTGAAGAAGATCCAAGATGATTTGACATCATTGT
* *
100011491 GCTTACAATGAGCGAATCGAAGACATAGCTGATATGGCTTTCACGTGTTTACGATGAAGCAAATC
66 GCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* * * * *
100011556 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACG
131 TAAGATGATTTGGAAACTCTGTATTATCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCGACA
100011621 GGGAGCAGAT
196 GGGAGCAGAT
* *
100011631 GCATAGTAGATCTCACATTCAGATGTTTATACTGAAGAAGATCCAAGATGGTTTGACATCATTGT
1 GCATAGCAGATCTCACATTCAGATGTTTATACTGAAGAAGATCCAAGATGATTTGACATCATTGT
100011696 GCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
66 GCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
*
100011761 TAAGATGATTTGGAAACTTTGTATTATCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCGACA
131 TAAGATGATTTGGAAACTCTGTATTATCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCGACA
100011826 GGGAGCAGAT
196 GGGAGCAGAT
* * * **
100011836 ACATAGCAGATCTCACATTCAGATAATTT-CACTGAAGCAAGATCCAAGATGATTTGACATTTTT
1 GCATAGCAGATCTCACATTCAGAT-GTTTATACTGAAG-AAGATCCAAGATGATTTGACATCATT
* * * *
100011900 GTGTTTACAAGGAACAAATC-AAGGACATAGCAGATTTG
64 GTGCTTACAAGGAGCGAATCGAA-GACATAGCTGATTTG
100011938 ACTCTCAGAT
Statistics
Matches: 280, Mismatches: 24, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
205 223 0.80
206 57 0.20
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (205 bp):
GCATAGCAGATCTCACATTCAGATGTTTATACTGAAGAAGATCCAAGATGATTTGACATCATTGT
GCTTACAAGGAGCGAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
TAAGATGATTTGGAAACTCTGTATTATCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCGACA
GGGAGCAGAT
Found at i:100013804 original size:20 final size:19
Alignment explanation
Indices: 100013779--100013912 Score: 116
Period size: 20 Copynumber: 6.8 Consensus size: 19
100013769 TATTTTTAAA
100013779 TTATATATTATATGATTATT
1 TTATATATTATAT-ATTATT
100013799 TTATATATTACTCATATTATT
1 TTATATATTA-T-ATATTATT
100013820 TATATATATTATATATTATT
1 T-TATATATTATATATTATT
* *
100013840 TTCACATA-TATACT-TTCATA
1 TT-ATATATTATA-TATT-ATT
100013860 TTATATATTATAT-TTA-T
1 TTATATATTATATATTATT
*
100013877 TT-TATATTATTATATCATT
1 TTATATATTA-TATATTATT
*
100013896 TTATACTATTAAATATT
1 TTATA-TATTATATATT
100013913 TTTATCTACA
Statistics
Matches: 95, Mismatches: 7, Indels: 24
0.75 0.06 0.19
Matches are distributed among these distances:
16 7 0.07
17 5 0.05
18 3 0.03
19 17 0.18
20 38 0.40
21 14 0.15
22 11 0.12
ACGTcount: A:0.36, C:0.06, G:0.01, T:0.57
Consensus pattern (19 bp):
TTATATATTATATATTATT
Found at i:100013818 original size:29 final size:26
Alignment explanation
Indices: 100013768--100013838 Score: 72
Period size: 29 Copynumber: 2.6 Consensus size: 26
100013758 TGCTTTGTTT
*
100013768 TTATTTT-TAAATTATATATTATATGA
1 TTATTTTATATATTATATATTAT-TGA
*
100013794 TTATTTTATATATTACTCATATTATTTA
1 TTATTTTATATATTA-T-ATATTATTGA
*
100013822 TATATATTATATATTAT
1 T-TATTTTATATATTAT
100013839 TTTCACATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
26 7 0.18
27 6 0.16
28 5 0.13
29 20 0.53
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (26 bp):
TTATTTTATATATTATATATTATTGA
Found at i:100013876 original size:13 final size:14
Alignment explanation
Indices: 100013778--100013891 Score: 71
Period size: 13 Copynumber: 8.0 Consensus size: 14
100013768 TTATTTTTAA
100013778 ATTATATATTATAT
1 ATTATATATTATAT
100013792 GATTAT-T-TTATAT
1 -ATTATATATTATAT
*
100013805 ATTACTCATATTATTT
1 ATTA-T-ATATTATAT
100013821 A-TATATATTATAT
1 ATTATATATTATAT
* *
100013834 ATTATTTTCACATATAT
1 ATTA-TAT-A-TTATAT
100013851 ACTT-TCATATTATAT
1 A-TTAT-ATATTATAT
100013866 ATTATAT-TTAT-T
1 ATTATATATTATAT
100013878 -TTATATTATTATAT
1 ATTATA-TATTATAT
100013892 CATTTTATAC
Statistics
Matches: 79, Mismatches: 6, Indels: 29
0.69 0.05 0.25
Matches are distributed among these distances:
11 5 0.06
12 6 0.08
13 24 0.30
14 9 0.11
15 17 0.22
16 9 0.11
17 7 0.09
18 2 0.03
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.58
Consensus pattern (14 bp):
ATTATATATTATAT
Found at i:100013917 original size:18 final size:18
Alignment explanation
Indices: 100013875--100013914 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
100013865 TATTATATTT
* *
100013875 ATTTTATATTATTATATC
1 ATTTTATACTATTAAATC
100013893 ATTTTATACTATTAAAT-
1 ATTTTATACTATTAAATC
100013910 ATTTT
1 ATTTT
100013915 TATCTACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTTTATACTATTAAATC
Found at i:100016971 original size:53 final size:52
Alignment explanation
Indices: 100016907--100017014 Score: 162
Period size: 53 Copynumber: 2.1 Consensus size: 52
100016897 AGGATCACAT
* * * * *
100016907 ATCATACCGATGCCATATCCCAGCTATGGTCTTATACGGAATCACATTATCAC
1 ATCACACCGATGCCATAGCCCAACTATGGTATTATACGGAAGCACA-TATCAC
100016960 ATCACACCGATGCCATAGCCCAACTATGGTATTATACGGAAGCACATATCAC
1 ATCACACCGATGCCATAGCCCAACTATGGTATTATACGGAAGCACATATCAC
100017012 ATC
1 ATC
100017015 TTTTCCGTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
52 9 0.18
53 41 0.82
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (52 bp):
ATCACACCGATGCCATAGCCCAACTATGGTATTATACGGAAGCACATATCAC
Found at i:100018942 original size:102 final size:102
Alignment explanation
Indices: 100018830--100019030 Score: 402
Period size: 102 Copynumber: 2.0 Consensus size: 102
100018820 TTCATATATT
100018830 CTAATTTTTTTTTGTAAAAGGTTGTTCTGTTATTTAGGATAAACAAGAAAAGTCGAAACCCAGTA
1 CTAATTTTTTTTTGTAAAAGGTTGTTCTGTTATTTAGGATAAACAAGAAAAGTCGAAACCCAGTA
100018895 AGTTAGGGCACGTTTTCTTGAATTTTCTAATACCAAC
66 AGTTAGGGCACGTTTTCTTGAATTTTCTAATACCAAC
100018932 CTAATTTTTTTTTGTAAAAGGTTGTTCTGTTATTTAGGATAAACAAGAAAAGTCGAAACCCAGTA
1 CTAATTTTTTTTTGTAAAAGGTTGTTCTGTTATTTAGGATAAACAAGAAAAGTCGAAACCCAGTA
100018997 AGTTAGGGCACGTTTTCTTGAATTTTCTAATACC
66 AGTTAGGGCACGTTTTCTTGAATTTTCTAATACC
100019031 GAATACTGCC
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 99 1.00
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (102 bp):
CTAATTTTTTTTTGTAAAAGGTTGTTCTGTTATTTAGGATAAACAAGAAAAGTCGAAACCCAGTA
AGTTAGGGCACGTTTTCTTGAATTTTCTAATACCAAC
Found at i:100020134 original size:22 final size:23
Alignment explanation
Indices: 100020103--100020164 Score: 85
Period size: 22 Copynumber: 2.8 Consensus size: 23
100020093 TTTGTAGGCA
*
100020103 AGTGGAGTGGTTGGGA-TGGTTT
1 AGTGGGGTGGTTGGGAGTGGTTT
*
100020125 AGTGGGGTGGTT-AGAGTGGTTT
1 AGTGGGGTGGTTGGGAGTGGTTT
100020147 AGTGGGGTGGTT-GGAGTG
1 AGTGGGGTGGTTGGGAGTG
100020165 AAGATATTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 2 0.06
22 34 0.94
ACGTcount: A:0.13, C:0.00, G:0.53, T:0.34
Consensus pattern (23 bp):
AGTGGGGTGGTTGGGAGTGGTTT
Found at i:100020908 original size:206 final size:206
Alignment explanation
Indices: 100020658--100021737 Score: 1908
Period size: 206 Copynumber: 5.2 Consensus size: 206
100020648 CAAATCTGCT
* *
100020658 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCGGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
* *
100020723 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTTGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
* * *
100020788 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGGCTCGCTTTAGCGTAAGCACGCAAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
*
100020853 AATCAGCTATA
196 AATCAGCTATG
100020864 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
* *
100020929 ATTTGAAGGCCAGATCTGCTATGTATCTACTCTCCATCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
* * *
100020994 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAACCATGTGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
*
100021059 AATCAACTATG
196 AATCAGCTATG
*
100021070 TCTTCGATTTGCTCTTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
* *
100021135 GTCTGAAGGCCAGATCTGCTATGTATCCACTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
100021200 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
100021265 AATCAGCTATG
196 AATCAGCTATG
* *
100021276 TCTTCGATTTGCTCCTTGTAAGCACAATGATGCCAAATCATCTTGGATCTTACTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
*
100021341 ATCTAAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
* *
100021406 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTCGCTTTAGCGTAAGCATGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
100021471 AATCAGCTATG
196 AATCAGCTATG
100021482 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
* *
100021547 ATCTGAAGGCCAGATCTGCTATCTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
*
100021612 TTCTCTGACAATATAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
100021677 AATCAGCTATG
196 AATCAGCTATG
* * *
100021688 TCTTCGATTTGCTCCTTGTAAGAACAAGGATACCAAACCATCTTGGATCT
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCT
100021738 GTTTTAGCCA
Statistics
Matches: 832, Mismatches: 42, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
206 832 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (206 bp):
TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
ATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
AATCAGCTATG
Found at i:100034692 original size:22 final size:22
Alignment explanation
Indices: 100034632--100034692 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
100034622 TTTGTAGGCA
*
100034632 AGTGGAGTGGTTGG-GATGGTTT
1 AGTGGGGTGGTTGGAG-TGGTTT
*
100034654 AGTGGGGTGGTTAGAGTGGTTT
1 AGTGGGGTGGTTGGAGTGGTTT
100034676 AGTGGGGTGGTTGGAGT
1 AGTGGGGTGGTTGGAGT
100034693 AAAGATATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
22 34 0.97
23 1 0.03
ACGTcount: A:0.13, C:0.00, G:0.52, T:0.34
Consensus pattern (22 bp):
AGTGGGGTGGTTGGAGTGGTTT
Found at i:100051690 original size:23 final size:22
Alignment explanation
Indices: 100051639--100051692 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
100051629 ATACTACATC
100051639 AATATGTACATAT-ATA--AAA
1 AATATGTACATATAATATTAAA
**
100051658 AATAAATACATGATAATATTAAA
1 AATATGTACAT-ATAATATTAAA
100051681 AATATGTACATA
1 AATATGTACATA
100051693 ATATAGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AATATGTACATATAATATTAAA
Found at i:100051739 original size:22 final size:24
Alignment explanation
Indices: 100051655--100051740 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 24
100051645 TACATATATA
* *
100051655 AAAAATAAATACATGATAATA--TT
1 AAAAATATATACATAAT-ATAGGTT
*
100051678 AAAAATATGTACATAATATAGTGTT
1 AAAAATATATACATAATATAG-GTT
*
100051703 AAAAATACATACATAATATA-GTT
1 AAAAATATATACATAATATAGGTT
*
100051726 -AAGATATATACATAA
1 AAAAATATATACATAA
100051741 GATAACATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 17 0.32
25 20 0.38
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAGGTT
Found at i:100051787 original size:25 final size:25
Alignment explanation
Indices: 100051759--100051891 Score: 93
Period size: 25 Copynumber: 5.6 Consensus size: 25
100051749 GTAGAAAAAA
100051759 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
100051784 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* *
100051809 ATATATATACGTAATATAA-ATTTAA-
1 ATATATA-A-ATAATATAATATTAAAG
** *
100051834 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
100051856 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
100051879 AAATAT-AATAATA
1 ATATATAAATAATA
100051892 ACAAAAAAAG
Statistics
Matches: 84, Mismatches: 17, Indels: 16
0.72 0.15 0.14
Matches are distributed among these distances:
21 4 0.05
22 18 0.21
23 12 0.14
24 10 0.12
25 29 0.35
26 5 0.06
27 6 0.07
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:100051796 original size:14 final size:13
Alignment explanation
Indices: 100051756--100051806 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 13
100051746 CATGTAGAAA
100051756 AAAATATATAAAT
1 AAAATATATAAAT
* *
100051769 AATATA-AT-ATT
1 AAAATATATAAAT
100051780 AAAGATATATAAAT
1 AAA-ATATATAAAT
100051794 AAAATAGTATAAA
1 AAAATA-TATAAA
100051807 ATATATATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
11 4 0.13
12 5 0.17
13 10 0.33
14 11 0.37
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (13 bp):
AAAATATATAAAT
Found at i:100051815 original size:52 final size:46
Alignment explanation
Indices: 100051753--100051886 Score: 112
Period size: 52 Copynumber: 2.8 Consensus size: 46
100051743 TAACATGTAG
*
100051753 AAAAAAATATATAAATAATATAATATTAAAGATATATAAATAAAATAGTAT
1 AAAAGAATATAT-AATAATATAATATT-AAGA-ATATAAATAAAATA-T-T
* * ** *
100051804 AAAATATATATATACGTAATATAA-ATTTAA-AATATACCTAATATATT
1 AAAAGA-ATATATA-ATAATATAATA-TTAAGAATATAAATAAAATATT
100051851 AAAAGAATATAT-ATAATATAATATTAAGAAATATAA
1 AAAAGAATATATAATAATATAATATTAAG-AATATAA
100051887 TAATAACAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
44 12 0.17
45 1 0.01
46 12 0.17
47 6 0.09
48 1 0.01
49 11 0.16
50 1 0.01
51 9 0.13
52 16 0.23
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (46 bp):
AAAAGAATATATAATAATATAATATTAAGAATATAAATAAAATATT
Found at i:100051884 original size:22 final size:22
Alignment explanation
Indices: 100051820--100051891 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
100051810 TATATATACG
*
100051820 TAATATAA-ATTTA-AAATATA
1 TAATATAATATTAAGAAATATA
* *
100051840 CCTAATATATTA-AAAGAATATATA
1 --TAATATAATATTAAGAA-ATATA
100051864 TAATATAATATTAAGAAATATAA
1 TAATATAATATTAAGAAATAT-A
100051887 TAATA
1 TAATA
100051892 ACAAAAAAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
22 21 0.52
23 14 0.35
24 5 0.12
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (22 bp):
TAATATAATATTAAGAAATATA
Found at i:100052411 original size:30 final size:30
Alignment explanation
Indices: 100052376--100052546 Score: 281
Period size: 30 Copynumber: 5.7 Consensus size: 30
100052366 GTACAAGTGA
* *
100052376 TGGTGGAGAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
100052406 TGGTGGAAAAAGAGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
100052436 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
100052466 TGGTGGAAAA-GAGTGGCTAGTGGAGTTAG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
100052495 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
100052525 TGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGAAAAGGAGTGGCTAGT
100052547 TGAGAAAAGT
Statistics
Matches: 130, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
29 27 0.21
30 103 0.79
ACGTcount: A:0.23, C:0.04, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
Found at i:100052504 original size:59 final size:59
Alignment explanation
Indices: 100052376--100052546 Score: 306
Period size: 59 Copynumber: 2.9 Consensus size: 59
100052366 GTACAAGTGA
* *
100052376 TGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGG-AAAAGAGTGGCTAGTGGAGTTAG
100052436 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAGTGGAGTTAG
1 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAGTGGAGTTAG
100052495 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAA-GAGTGGCTAGT
100052547 TGAGAAAAGT
Statistics
Matches: 108, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
59 62 0.57
60 46 0.43
ACGTcount: A:0.23, C:0.04, G:0.49, T:0.25
Consensus pattern (59 bp):
TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAGTGGAGTTAG
Found at i:100053422 original size:78 final size:77
Alignment explanation
Indices: 100053260--100053527 Score: 389
Period size: 77 Copynumber: 3.5 Consensus size: 77
100053250 ATGTAAACCC
* * *
100053260 AAGGCTCAACTCACATCTCGCAATATGAGTTGA--TTTTTGAAAAGCAGAAATTCAAAA-CGCCT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAG-CT
** * *
100053322 CAGCGTGTGACCC
65 CAGCACGTGAGCA
*
100053335 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGAAAATAGCT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAAGCAGAAATTGAAAATAGCT
100053400 CAGCACGTGAGCA
65 CAGCACGTGAGCA
* *
100053413 AAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
100053478 AGCACGTGAGCA
66 AGCACGTGAGCA
* *
100053490 AAGGCTCAACTCACTTCTCGTAATATGAGTTGATTTTT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
100053528 GAAAAATAAA
Statistics
Matches: 174, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
75 31 0.18
77 77 0.44
78 65 0.37
79 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (77 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
AGCACGTGAGCA
Found at i:100053665 original size:16 final size:17
Alignment explanation
Indices: 100053632--100053666 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
100053622 TGATATTTTG
*
100053632 AAAAGCAGAAATTGGAA
1 AAAAACAGAAATTGGAA
100053649 AAAAACAGAAATT-GAA
1 AAAAACAGAAATTGGAA
100053665 AA
1 AA
100053667 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.66, C:0.06, G:0.17, T:0.11
Consensus pattern (17 bp):
AAAAACAGAAATTGGAA
Found at i:100053845 original size:73 final size:73
Alignment explanation
Indices: 100053750--100054742 Score: 571
Period size: 73 Copynumber: 12.8 Consensus size: 73
100053740 AAAAATCGAC
* * * * *
100053750 AATT-CCTCAGCGTGCCCCGAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTGAAAAATA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
100053814 GAAATTGA
66 GAAATTGA
*
100053822 AATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG----A-A
100053886 GAAACAGAAATTGA
61 -AAACAGAAATTGA
* ** * * * *
100053900 AAATACCTCAGCACGTGAGCCGAGGCTCAACTCACTTCTTGCAATATGAATTGATTTTTTTG-AC
1 AATTACCTCAGCA--TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA
* *
100053964 AATAGAAATTGC
62 AACAGAAATTGA
* * *
100053976 AATTACCTCAACATGTCCCAAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTGAAAAACA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
*
100054041 TAAATTGA
66 GAAATTGA
** **** * * * *
100054049 AACAAAAAAATTGACAAT-ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AATTACCTCA--G-C-ATGTCC-C-GAG-G-CTC-A---AC---TCACCTCTCGCAATATGAGTT
*
100054113 GATTTTTGAAAAACAGAAATTTAA
51 GATTTTTGAAAAACAGAAA-TTGA
* * * * * **
100054137 AAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAAA
100054202 ACAGAAATTGA
63 ACAGAAATTGA
* *** * * * * *
100054213 AA-AACAAAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCACTTCTCGCAATATGAG
1 AATTAC-CTCA--G-CATGTCC-C-G-A-G-G-CTC-A-ACTC-A--C-C-TCTCGCAATATGAG
*
100054277 TTGATTTTTGACAAACAGAAATTGA
49 TTGATTTTTGAAAAACAGAAATTGA
* * *
100054302 AATTACCTCAGCGTGTCCCGAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTTTTGAAAAAT
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAC
*
100054367 AGAAATTTAA
65 AGAAA-TTGA
* * * * * **
100054377 AAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAAA
100054442 ACAGAAATTGA
63 ACAGAAATTGA
*** * * * * *
100054453 AGA--ACAGAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCACCTCTCGCAATATGA
1 A-ATTAC-CTCA--G-CATGTCC-C-G-A-G-G-CTC-A-ACTC-----ACCTCTCGCAATATGA
* *
100054516 GTTAATTTTTGACAAACAGAAATTGA
48 GTTGATTTTTGAAAAACAGAAATTGA
* * *
100054542 AATTACCTCAGCGTGTCCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTGACAAACA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
100054607 GAAATTGA
66 GAAATTGA
* * *
100054615 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTGAAAAACA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
* *
100054679 AAAATTAA
66 GAAATTGA
* * * ** *
100054687 AAGTACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTT
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
100054743 CCTTGAAAAG
Statistics
Matches: 711, Mismatches: 134, Indels: 151
0.71 0.13 0.15
Matches are distributed among these distances:
72 79 0.11
73 166 0.23
74 71 0.10
75 56 0.08
76 36 0.05
77 36 0.05
78 31 0.04
79 9 0.01
80 40 0.06
81 7 0.01
82 5 0.01
83 9 0.01
84 6 0.01
85 9 0.01
86 9 0.01
87 46 0.06
88 9 0.01
89 43 0.06
90 5 0.01
91 1 0.00
92 38 0.05
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (73 bp):
AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
GAAATTGA
Found at i:100054115 original size:87 final size:87
Alignment explanation
Indices: 100053969--100054133 Score: 260
Period size: 87 Copynumber: 1.9 Consensus size: 87
100053959 TTGACAATAG
*
100053969 AAATTGCAATTACCTCAACATGTCCCAAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTG
1 AAATTGCAATTACCTCAACATGCCCCAAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTG
*
100054034 AAAAACATAAATTGAAACAAAA
66 AAAAACAGAAATTGAAACAAAA
* * * *
100054056 AAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTG-CAATTACCTCAACATGCCCCAAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTT
100054120 GAAAAACAGAAATT
65 GAAAAACAGAAATT
100054134 TAAAAATACC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
87 68 0.96
88 3 0.04
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (87 bp):
AAATTGCAATTACCTCAACATGCCCCAAGGCTCAACTCACCTCCCGCAATATGAGTTGATTTTTG
AAAAACAGAAATTGAAACAAAA
Found at i:100054280 original size:166 final size:163
Alignment explanation
Indices: 100053649--100054670 Score: 755
Period size: 165 Copynumber: 6.4 Consensus size: 163
100053639 GAAATTGGAA
* * * * *
100053649 AAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAATTCACCTCTCACAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTC-CGAAGCTCAACTCACCTCTCGCAATATGAGTT
** * * * **
100053714 GATTTATTTTT------TTGAAATT-AAAACACAAAAATCGACAATTCCTCAGC-GTGCCCCGAG
65 GATTT-TTTTTGAAAAACAGAAATTGAAAA-ACAAAAATTGAAAATACCTCAGCAGTGAGCCGAG
*
100053771 GCTCAACTCACTTCTTGCAATATGAGTTGATTTTTG
128 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
* * *
100053807 AAAAATAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCC-GAAGCTCAACTCACCTCTCGCAATATGAGTT
* *
100053872 GA----TTTTGACAAAC----A--G--AAACAGAAATTGAAAATACCTCAGCACGTGAGCCGAGG
65 GATTTTTTTTGAAAAACAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCA-GTGAGCCGAGG
* *
100053925 CTCAACTCACTTCTTGCAATATGAATTGATTTTTTTG
129 CTCAACTCACTTCTCGCAATATGAGTTGA--TTTTTG
* * * * * * *
100053962 -ACAATAGAAATTGCAATTACCTCAACATGTCCCAAGGCTCAACTCACCTCCCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCGAA-GCTCAACTCACCTCTCGCAATATGAGTT
* * **
100054026 GA---TTTTTGAAAAACATAAATTGAAACAA-AAAAATTGACAATACCTCAGC-GTGCCCCGAGG
65 GATTTTTTTTGAAAAACAGAAATTGAAA-AACAAAAATTGAAAATACCTCAGCAGTGAGCCGAGG
*
100054086 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
129 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
* *
100054121 AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAA-TTGAAATTACCTCAGCGTGTCC-GAAGCTCAACTCACCTCTCGCAATATGAGT
* ** * *
100054186 TGATTTTTTTTTACGAACAGAAATTGAAAAACAAAAATTGAAAAGACCTCAGCATGTGAGTCGAG
64 TGATTTTTTTTGAAAAACAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCA-GTGAGCCGAG
100054251 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
128 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
* * *
100054287 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCGCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGT-CCGAAGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
100054352 GA--TTTTTTGAAAAATAGAAA-T------------TTAAAAATACCTCAAC-GTG-TCCTGAGG
65 GATTTTTTTTGAAAAACAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCAGTGAGCC-GAGG
*
100054400 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAACAG
129 CTCAACTCACTTCTCGCAATATGAGTTGA----TTTTT-------G
** *
100054446 AAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGT-CGAGGCTCAACTCACCTCTCGCA
1 --A---AA-AACAGAAATTGAAATTACCTCAGC--GT--GTCCGAAGCTCAACTCACCTCTCGCA
* *
100054510 ATATGAGTT-A--ATTTTTGACAAACAGAAATTG--------AAA-T-----TACCTCAGC-GTG
56 ATATGAGTTGATTTTTTTTGAAAAACAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCAGTG
** * *
100054557 TCCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTG
121 AGCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
* * *
100054600 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCC-GAAGCTCAACTCACCTCTCGCAATATGAGTT
100054665 GATTTT
65 GATTTT
100054671 GAAAAACAAA
Statistics
Matches: 721, Mismatches: 77, Indels: 141
0.77 0.08 0.15
Matches are distributed among these distances:
144 2 0.00
145 1 0.00
146 32 0.04
147 2 0.00
148 57 0.08
149 2 0.00
150 13 0.02
151 19 0.03
152 8 0.01
153 42 0.06
154 59 0.08
155 17 0.02
158 60 0.08
159 8 0.01
160 8 0.01
161 88 0.12
162 3 0.00
163 36 0.05
164 41 0.06
165 114 0.16
166 72 0.10
167 34 0.05
169 2 0.00
170 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (163 bp):
AAAAACAGAAATTGAAATTACCTCAGCGTGTCCGAAGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTTGAAAAACAGAAATTGAAAAACAAAAATTGAAAATACCTCAGCAGTGAGCCGAGGCT
CAACTCACTTCTCGCAATATGAGTTGATTTTTG
Found at i:100054416 original size:240 final size:239
Alignment explanation
Indices: 100054056--100054670 Score: 1072
Period size: 240 Copynumber: 2.6 Consensus size: 239
100054046 TGAAACAAAA
*
100054056 AAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGA-AATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
100054120 GAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAG
65 GAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
100054185 TTGATTTTTTTTTACGAACAGAAATTGAAAAACAAAAATTGAAAAGACCTCAGCATGTGAGTCGA
130 TTGATTTTTTTTTACGAACAGAAATTGAAAAACAAAAATTGAAAAGACCTCAGCATGTGAGTCGA
* *
100054250 GGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGACAAACAG
195 GGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAG
*
100054295 AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCGCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* *
100054360 GAAAAATAGAAATTTAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
65 GAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
100054425 TTGATTTTTTTTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGTCGA
130 TTGATTTTTTTTTACGAACAGAAATTGAAAAACAAAAATTGAAAAGACCTCAGCATGTGAGTCGA
100054490 GGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAG
195 GGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAG
*
100054535 AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* * * *
100054600 ACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGT
66 AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
100054664 TGATTTT
131 TGATTTT
100054671 GAAAAACAAA
Statistics
Matches: 357, Mismatches: 17, Indels: 5
0.94 0.04 0.01
Matches are distributed among these distances:
238 58 0.16
239 69 0.19
240 230 0.64
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (239 bp):
AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTTTACGAACAGAAATTGAAAAACAAAAATTGAAAAGACCTCAGCATGTGAGTCGAG
GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAG
Found at i:100054459 original size:14 final size:14
Alignment explanation
Indices: 100054440--100054467 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
100054430 TTTTTTTTAC
100054440 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100054454 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100054468 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:100054724 original size:145 final size:148
Alignment explanation
Indices: 100054455--100054742 Score: 411
Period size: 145 Copynumber: 2.0 Consensus size: 148
100054445 GAAATTGAAG
* *
100054455 AACAGAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAAGACCTCAGCATGTGACTCGAGGCTCAACTCACCTCTAGCAATATGAGTTA
* * * * * *
100054520 ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTTACCTCTCGCAAT
66 ATTTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
100054585 ATGAGTTGATTTTTGACA
131 ATGAGTTGATTTTTGACA
** * * *
100054603 AACAGAAATTGAAATTACCTCAGCGTGT-CCT-GAGGCTCAACTCACCTCTAGCAATATGAGTTG
1 AACAGAAATTGAAAAGACCTCAGCATGTGACTCGAGGCTCAACTCACCTCTAGCAATATGAGTTA
** *
100054666 A-TTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAAT
66 ATTTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
100054730 ATGAGTTGATTTT
131 ATGAGTTGATTTT
100054743 CCTTGAAAAG
Statistics
Matches: 124, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
145 67 0.54
146 31 0.25
147 1 0.01
148 25 0.20
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (148 bp):
AACAGAAATTGAAAAGACCTCAGCATGTGACTCGAGGCTCAACTCACCTCTAGCAATATGAGTTA
ATTTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTGACA
Found at i:100063062 original size:12 final size:12
Alignment explanation
Indices: 100063042--100063077 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
100063032 TGGGATATGC
*
100063042 AATGTATGAATG
1 AATGCATGAATG
100063054 AATGCATGAATG
1 AATGCATGAATG
100063066 AATGCATGAATG
1 AATGCATGAATG
100063078 TTAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:100064627 original size:16 final size:15
Alignment explanation
Indices: 100064606--100064653 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
100064596 GATGGGAATA
100064606 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
100064622 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
100064637 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
100064653 A
1 A
100064654 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:100064636 original size:8 final size:8
Alignment explanation
Indices: 100064602--100064653 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
100064592 CAATGATGGG
*
100064602 AATAATAA
1 AATATTAA
100064610 AATATATAA
1 AATAT-TAA
100064619 AATA-TAA
1 AATATTAA
100064626 AATATTAA
1 AATATTAA
*
100064634 AATATCAA
1 AATATTAA
*
100064642 AATATTAG
1 AATATTAA
100064650 AATA
1 AATA
100064654 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:100064653 original size:24 final size:24
Alignment explanation
Indices: 100064601--100064657 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
100064591 ACAATGATGG
*
100064601 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
100064625 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
100064649 GAATAATAA
1 GAATAATAA
100064658 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:100064818 original size:23 final size:22
Alignment explanation
Indices: 100064767--100064820 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
100064757 ATACTACATC
100064767 AATATGTACATAT-ATA--AAA
1 AATATGTACATATAATATTAAA
**
100064786 AATAAATACATGATAATATTAAA
1 AATATGTACAT-ATAATATTAAA
100064809 AATATGTACATA
1 AATATGTACATA
100064821 ATATAGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AATATGTACATATAATATTAAA
Found at i:100064867 original size:22 final size:24
Alignment explanation
Indices: 100064783--100064868 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 24
100064773 TACATATATA
* *
100064783 AAAAATAAATACATGATAATA--TT
1 AAAAATATATACATAAT-ATAGGTT
*
100064806 AAAAATATGTACATAATATAGTGTT
1 AAAAATATATACATAATATAG-GTT
*
100064831 AAAAATACATACATAATATA-GTT
1 AAAAATATATACATAATATAGGTT
*
100064854 -AAGATATATACATAA
1 AAAAATATATACATAA
100064869 GATAACATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 17 0.32
25 20 0.38
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAGGTT
Found at i:100064916 original size:25 final size:25
Alignment explanation
Indices: 100064888--100065019 Score: 98
Period size: 25 Copynumber: 5.6 Consensus size: 25
100064878 TAGAAAAAAA
100064888 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
100064913 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
** * *
100064938 ATATATACGTAATATAAAATTTAA-
1 ATATATAAATAATATAATATTAAAG
** *
100064962 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
100064984 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
100065007 AAATAT-AATAATA
1 ATATATAAATAATA
100065020 ACAAAAAAAG
Statistics
Matches: 84, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
21 3 0.04
22 13 0.15
23 24 0.29
24 6 0.07
25 38 0.45
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:100064925 original size:14 final size:13
Alignment explanation
Indices: 100064885--100064935 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 13
100064875 ATGTAGAAAA
100064885 AAAATATATAAAT
1 AAAATATATAAAT
* *
100064898 AATATA-AT-ATT
1 AAAATATATAAAT
100064909 AAAGATATATAAAT
1 AAA-ATATATAAAT
100064923 AAAATAGTATAAA
1 AAAATA-TATAAA
100064936 ATATATATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
11 4 0.13
12 5 0.17
13 10 0.33
14 11 0.37
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (13 bp):
AAAATATATAAAT
Found at i:100065538 original size:30 final size:30
Alignment explanation
Indices: 100065503--100065674 Score: 263
Period size: 30 Copynumber: 5.7 Consensus size: 30
100065493 GTACAAGTGA
* *
100065503 TGGTGGAGAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
100065533 TGGTGGAAAAAGAGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
100065563 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
* * *
100065593 TAGTGGAAAAAGAGTGGCTAGTGGAGTTAG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
100065623 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
100065653 TGGTGGAAAAGGAGTGGTTAGT
1 TGGTGGAAAAGGAGTGGCTAGT
100065675 TGAGAAAAGT
Statistics
Matches: 127, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 127 1.00
ACGTcount: A:0.24, C:0.03, G:0.48, T:0.26
Consensus pattern (30 bp):
TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
Found at i:100065593 original size:60 final size:60
Alignment explanation
Indices: 100065503--100065674 Score: 299
Period size: 60 Copynumber: 2.9 Consensus size: 60
100065493 GTACAAGTGA
* *
100065503 TGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTAG
*
100065563 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTAGTGGAAAAAGAGTGGCTAGTGGAGTTAG
1 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTAG
* *
100065623 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGTTAGT
1 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
100065675 TGAGAAAAGT
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 106 1.00
ACGTcount: A:0.24, C:0.03, G:0.48, T:0.26
Consensus pattern (60 bp):
TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTAG
Found at i:100067311 original size:26 final size:26
Alignment explanation
Indices: 100067277--100067333 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
100067267 TGGGTTTTAT
* *
100067277 GTTTAAGTTTGGGCTATTAGGTTTGG
1 GTTTAAGTTTAGGCCATTAGGTTTGG
*
100067303 GTTTAAGTTTAGGCCATTGGGTTTGG
1 GTTTAAGTTTAGGCCATTAGGTTTGG
*
100067329 TTTTA
1 GTTTA
100067334 GGATATTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.16, C:0.05, G:0.32, T:0.47
Consensus pattern (26 bp):
GTTTAAGTTTAGGCCATTAGGTTTGG
Found at i:100067986 original size:45 final size:45
Alignment explanation
Indices: 100067936--100068135 Score: 142
Period size: 45 Copynumber: 4.5 Consensus size: 45
100067926 GGTGGCTTAA
100067936 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCATCTTCG
1 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCATCTTCG
* ** ***
100067981 ATCTGCTTCACAGCAACTTCAGGGAA-ATAAGA-TCTAAAAT-TTC-
1 ATCTGCTTCACTGCAACTTCA-GGAAGCCAAGATTC-GCCATCTTCG
* * * * * * * * **** **
100068024 AGCCTACTCCACTACAACTTTAGGGAG-CTAGGTT-GGTGGCTTAA
1 A-TCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCATCTTCG
*
100068068 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCG
1 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCATCTTCG
100068113 ATCTGCTTCACTGCAACTTCAGG
1 ATCTGCTTCACTGCAACTTCAGG
100068136 GAAACAAGAT
Statistics
Matches: 111, Mismatches: 35, Indels: 18
0.68 0.21 0.11
Matches are distributed among these distances:
43 27 0.24
44 26 0.23
45 54 0.49
46 4 0.04
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (45 bp):
ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCATCTTCG
Found at i:100068276 original size:45 final size:45
Alignment explanation
Indices: 100068063--100068277 Score: 127
Period size: 45 Copynumber: 4.8 Consensus size: 45
100068053 AGGTTGGTGG
* * *
100068063 CTTAAATCTGCTTCACTGCAACTTCA-GGAAGCCAAGATTCGCCGT
1 CTTAGATCTGCTTCACTGCAACTTCAGGGAA-ACAAGATTCACCGT
* ***
100068108 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGA-TCTAAAAT
1 CTTAGATCTGCTTCACTGCAACTTCAGGGAAACAAGATTC-ACCGT
* * * * * * * * * * *** *
100068153 TTTAG-CCTACTCCACTACAACTTTAGAG-AGCTAGGTT-GGTGG
1 CTTAGATCTGCTTCACTGCAACTTCAGGGAAACAAGATTCACCGT
* * *
100068195 CTTAAATCTGCTTCACTGTAACTTCA-GGAAGCCAAGATTCACCGT
1 CTTAGATCTGCTTCACTGCAACTTCAGGGAA-ACAAGATTCACCGT
* *
100068240 CTTCGATCTGCTTCACTACAACTTCAGGGAAACAAGAT
1 CTTAGATCTGCTTCACTGCAACTTCAGGGAAACAAGAT
100068278 CTATAGGATT
Statistics
Matches: 118, Mismatches: 44, Indels: 16
0.66 0.25 0.09
Matches are distributed among these distances:
42 4 0.03
43 19 0.16
44 25 0.21
45 62 0.53
46 8 0.07
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (45 bp):
CTTAGATCTGCTTCACTGCAACTTCAGGGAAACAAGATTCACCGT
Found at i:100068303 original size:132 final size:132
Alignment explanation
Indices: 100067760--100068280 Score: 787
Period size: 132 Copynumber: 3.9 Consensus size: 132
100067750 GCAATCTTCG
* * * * * * * *
100067760 GCCTACTCCGCTACAACCTTAGGGAGCTAGGATAGTGGCTTGAATCTTGCTTCACTGCAATTTTA
1 GCCTACTCCACTACAACTTTAGAGAGCTAGGTTGGTGGCTTAAATC-TGCTTCACTGCAACTTCA
* * * * * *
100067825 GGAAGGCTAGATTCACCGTCTTTGATCTGC-TCTACTGCAACCTCAGGGAGACAAGATCTAAAAT
65 GGAAGCCAAGATTCACCGTCTTCGATCTGCTTC-ACTACAACTTCAGGGAAACAAGATCTAAAAT
100067889 TTCA
129 TTCA
100067893 GCCTACTCCACTACAACTTTA-AGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCA
1 GCCTACTCCACTACAACTTTAGA-GAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCA
* * *
100067957 GGAAGCCAAGATTCGCCATCTTCGATCTGCTTCAC-AGCAACTTCAGGGAAATAAGATCTAAAAT
65 GGAAGCCAAGATTCACCGTCTTCGATCTGCTTCACTA-CAACTTCAGGGAAACAAGATCTAAAAT
100068021 TTCA
129 TTCA
*
100068025 GCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAG
1 GCCTACTCCACTACAACTTTAGAGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAG
* *
100068090 GAAGCCAAGATTCGCCGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTT
66 GAAGCCAAGATTCACCGTCTTCGATCTGCTTCACTACAACTTCAGGGAAACAAGATCTAAAATTT
*
100068155 TA
131 CA
*
100068157 GCCTACTCCACTACAACTTTAGAGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGTAACTTCAG
1 GCCTACTCCACTACAACTTTAGAGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAG
100068222 GAAGCCAAGATTCACCGTCTTCGATCTGCTTCACTACAACTTCAGGGAAACAAGATCTA
66 GAAGCCAAGATTCACCGTCTTCGATCTGCTTCACTACAACTTCAGGGAAACAAGATCTA
100068281 TAGGATTCGC
Statistics
Matches: 357, Mismatches: 26, Indels: 11
0.91 0.07 0.03
Matches are distributed among these distances:
132 316 0.89
133 41 0.11
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (132 bp):
GCCTACTCCACTACAACTTTAGAGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCAG
GAAGCCAAGATTCACCGTCTTCGATCTGCTTCACTACAACTTCAGGGAAACAAGATCTAAAATTT
CA
Found at i:100068893 original size:49 final size:49
Alignment explanation
Indices: 100068836--100068932 Score: 176
Period size: 49 Copynumber: 2.0 Consensus size: 49
100068826 ATTCTATTGA
* *
100068836 GTAAAACTCGAAGTGAATACATTAAACAGGATAGCAAATCTACTAAGGC
1 GTAAAACTCAAAGTGAATACATTAAACAGGATAGCAAATCTAATAAGGC
100068885 GTAAAACTCAAAGTGAATACATTAAACAGGATAGCAAATCTAATAAGG
1 GTAAAACTCAAAGTGAATACATTAAACAGGATAGCAAATCTAATAAGG
100068933 TACAAAAATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (49 bp):
GTAAAACTCAAAGTGAATACATTAAACAGGATAGCAAATCTAATAAGGC
Found at i:100074465 original size:46 final size:45
Alignment explanation
Indices: 100074398--100074566 Score: 171
Period size: 46 Copynumber: 3.7 Consensus size: 45
100074388 GTAACCCGCC
*
100074398 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTATA
* * *
100074444 CATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGT-TA
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGTATA
* * * ** * *
100074490 CATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATC
1 CA--TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTATA
100074537 CATAAGTGAACTCGGACTCAACTCAACGAG
1 CATAAGTGAACTCGGACTCAACTCAACGAG
100074567 TTCAGATGCT
Statistics
Matches: 100, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
45 3 0.03
46 62 0.62
47 31 0.31
48 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (45 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTATA
Found at i:100074517 original size:93 final size:93
Alignment explanation
Indices: 100074405--100074575 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
100074395 GCCCATAAGT
** * * *
100074405 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATTCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
100074470 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCAGATGCCTAGTTACATCTCAC
* *
100074498 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
100074563 CGAGTTCAGATGC
66 CGAGCTCAGATGC
100074576 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCAC
Found at i:100075290 original size:19 final size:19
Alignment explanation
Indices: 100075268--100075354 Score: 70
Period size: 19 Copynumber: 4.3 Consensus size: 19
100075258 TAATAATAAT
100075268 ATAAAATAATAATATGTAC
1 ATAAAATAATAATATGTAC
*
100075287 ATAAAATACATATATATATATGC
1 ATAAAATA-ATA-ATATGTA--C
*
100075310 ATATAATAA-AAGTATGTA-
1 ATAAAATAATAA-TATGTAC
*
100075328 ATAATAATAATAATATCTAC
1 ATAA-AATAATAATATGTAC
100075348 AATAAAA
1 -ATAAAA
100075355 GAAAATATTA
Statistics
Matches: 54, Mismatches: 5, Indels: 17
0.71 0.07 0.22
Matches are distributed among these distances:
18 3 0.06
19 18 0.33
20 8 0.15
21 16 0.30
22 1 0.02
23 8 0.15
ACGTcount: A:0.57, C:0.06, G:0.05, T:0.32
Consensus pattern (19 bp):
ATAAAATAATAATATGTAC
Found at i:100077160 original size:72 final size:73
Alignment explanation
Indices: 100076950--100078114 Score: 1101
Period size: 72 Copynumber: 15.5 Consensus size: 73
100076940 GTGATCTGAA
*
100076950 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTGAAA-ACAGAAATTGAAATTACCTCA
*
100077015 GCATGTGAAC-TGAG
62 GC--GTG-TCTTGAG
* * *
100077029 GCTCAACTCACCTCT-GACAATATAAGTTGAGTTTTTTGAAAACAGAAATTGAAAATACCTCAAC
1 GCTCAACTCACCTCTCG-CAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAATTACCTCAGC
*
100077093 GTTTCTTGAG
64 GTGTCTTGAG
** *
100077103 GCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGT
**
100077167 GTCCCGAG
66 GTCTTGAG
* * *
100077175 GCTCAACTCATCTCTTGCAATATGAGTTGATTTTTTTTTTGACAACAGAAATTGAAATTACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTGAAAACAGAAATTGAAATTACCTCA
*
100077240 GCGTGTCCTGAG
62 GCGTGTCTTGAG
* *
100077252 GCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTTAAAAGGCAGAAATTGAAAAACAGAAAT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAA--CAGAAATT--------GAAAT
** * *
100077317 TGAAAAT-A-CCTCGGCGTGTGA-
55 T--ACCTCAGCGT-GTC-T-TGAG
* * * *
100077338 CCT-AAGGCTCAACCCGCCTCTTGCAATACGAGTTGATTTTTTTTTGAAAGACAGAAATTGAAAA
1 GCTCAA--CTC-A----CCTCTCGCAATATGAGTTGA---TTTTTTGAAA-ACAGAAATTGAAAT
* *
100077402 TACCTCAGCATGTGAAC-CGAG
55 TACCTCAGC--GTG-TCTTGAG
* * * * **
100077423 ACTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTAAAACAGAAATTGAAAATACCTCAAT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTGAAAACAGAAATTGAAATTACCTCAGC
*
100077488 GTGTCTTAAG
64 GTGTCTTGAG
** * * *
100077498 GCTCAACTCATTTCTTGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAACGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGT
100077562 GTCTTGAG
66 GTCTTGAG
* ** *
100077570 GCGCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGT
**
100077634 GTCCCGAG
66 GTCTTGAG
* * * *
100077642 GCTCAACTCACTTCTCGCAATATGAGTTGA-ATTTTGAAAATAGAAATTGAAATTACCTCAACGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGT
100077706 GTCTTGAG
66 GTCTTGAG
** *
100077714 GCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGT
**
100077778 GTCCCGAG
66 GTCTTGAG
*
100077786 GCTCAACTCACTTCTCGCAATATGA---G---TTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGT
**
100077845 GTCCCGAG
66 GTCTTGAG
* *
100077853 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAATTACCTCAGC
*
100077918 ATGTCTTGAG
64 GTGTCTTGAG
* *
100077928 GCTCAACTCACTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGT
**
100077992 GTCCCGAG
66 GTCTTGAG
* * *
100078000 GCTCGACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAAAAATTGAAAATACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTGAAA-ACAGAAATTGAAATTACCTCAG
*
100078065 CATGTCTTGAG
63 CGTGTCTTGAG
** *
100078076 GCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
100078115 TAAAACATCA
Statistics
Matches: 931, Mismatches: 102, Indels: 112
0.81 0.09 0.10
Matches are distributed among these distances:
67 65 0.07
69 1 0.00
70 1 0.00
72 381 0.41
73 17 0.02
74 50 0.05
75 96 0.10
76 85 0.09
77 97 0.10
78 12 0.01
79 44 0.05
83 3 0.00
84 14 0.02
85 13 0.01
86 7 0.01
87 8 0.01
88 1 0.00
92 17 0.02
93 8 0.01
94 10 0.01
95 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (73 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGT
GTCTTGAG
Found at i:100077315 original size:14 final size:14
Alignment explanation
Indices: 100077296--100077322 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
100077286 TTTTAAAAGG
100077296 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
100077310 CAGAAATTGAAAA
1 CAGAAATTGAAAA
100077323 TACCTCGGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:100086397 original size:12 final size:12
Alignment explanation
Indices: 100086377--100086412 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
100086367 TGGGATATGC
*
100086377 AATGTATGAATG
1 AATGCATGAATG
100086389 AATGCATGAATG
1 AATGCATGAATG
100086401 AATGCATGAATG
1 AATGCATGAATG
100086413 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:100088177 original size:15 final size:15
Alignment explanation
Indices: 100088157--100088193 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
100088147 TTAGGAAACG
100088157 TACATAAAAAATATA
1 TACATAAAAAATATA
*
100088172 TACAT-AAAAGTATA
1 TACATAAAAAATATA
100088186 TA-ATAAAA
1 TACATAAAA
100088194 GTATGTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 2 0.10
14 13 0.65
15 5 0.25
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (15 bp):
TACATAAAAAATATA
Found at i:100088191 original size:13 final size:13
Alignment explanation
Indices: 100088160--100088204 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
100088150 GGAAACGTAC
100088160 ATAA-AAAA-TAT
1 ATAATAAAAGTAT
100088171 ATACATAAAAGTAT
1 ATA-ATAAAAGTAT
100088185 ATAATAAAAGTAT
1 ATAATAAAAGTAT
*
100088198 GTAATAA
1 ATAATAA
100088205 TAATAATGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 3 0.10
12 1 0.03
13 20 0.67
14 6 0.20
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (13 bp):
ATAATAAAAGTAT
Found at i:100093714 original size:12 final size:12
Alignment explanation
Indices: 100093697--100093721 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
100093687 TAGCTGCTCT
100093697 TGCATCTGAAAC
1 TGCATCTGAAAC
100093709 TGCATCTGAAAC
1 TGCATCTGAAAC
100093721 T
1 T
100093722 ACAGTTTTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (12 bp):
TGCATCTGAAAC
Found at i:100097119 original size:131 final size:129
Alignment explanation
Indices: 100096659--100097148 Score: 450
Period size: 132 Copynumber: 3.7 Consensus size: 129
100096649 TTGCCTCACC
* * * * * *
100096659 TTAGAAAACACGAGTGCAATTCCGAA-GAGATATTCGATTATTTTGAACAAACGGGAGATTGCAA
1 TTAGAAAACATGAGTGAAATTCTGAAGGA-ATATCCGATTATTTTGAACAAAC-GAAAATTGCAA
* * *
100096723 CCCAGCACGATAGGGCACT-ATTCCCCGAATT-TCCAAACACCGGACATTTCTTTCATTTTAAAG
64 CCCAGCACGATAGGGCA-TGATT-CCCGAATTAT-CAAACACC-GAGATTACCTTCATTTTAAAG
*
100096786 GGTTT
125 GATTT
* * *
100096791 TTAGAAAACGTGAGTGAAATTCTGAAGGAATCTCCGATTGTTTTGAACAAACGAAAA-TGCGTAA
1 TTAGAAAACATGAGTGAAATTCTGAAGGAATATCCGATTATTTTGAACAAACGAAAATTGC--AA
* * * * ** * ** *
100096855 CCCAGCACGATAGGGCACGATTCTCGAATCACCAAACATCTAAGATCACCTTCATTTTGGGAGGT
64 CCCAGCACGATAGGGCATGATTCCCGAATTATCAAACA-CCGAGATTACCTTCATTTT-AAAGGA
100096920 TTT
127 TTT
** * **
100096923 TTA-ATAAACATGAGTGAAAACCTAAAGGAATATCCGATTATTTTGAACAAACGAGAAATCACAA
1 TTAGA-AAACATGAGTGAAATTCTGAAGGAATATCCGATTATTTTGAACAAACGA-AAATTGCAA
* * * *
100096987 CCCAGCACGATAGGGTATGACTCCCGAATTATCAAACACCGAGTATTGCCTTCGTTTTAAAGGAT
64 CCCAGCACGATAGGGCATGATTCCCGAATTATCAAACACCGAG-ATTACCTTCATTTTAAAGGAT
100097052 TT
128 TT
* * * * * *
100097054 TTAGAAGACATGAGTGAAATTTTGGAGGGATATTCGATTATTTTGAGCAAACGCAAAATTGCAAC
1 TTAGAAAACATGAGTGAAATTCTGAAGGAATATCCGATTATTTTGAACAAACG-AAAATTGCAAC
* *
100097119 CCAGCACGTTAGGGCACGATTCCGCGAATT
65 CCAGCACGATAGGGCATGATTCC-CGAATT
100097149 GCCAAAATAT
Statistics
Matches: 285, Mismatches: 59, Indels: 28
0.77 0.16 0.08
Matches are distributed among these distances:
130 3 0.01
131 106 0.37
132 170 0.60
133 5 0.02
134 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (129 bp):
TTAGAAAACATGAGTGAAATTCTGAAGGAATATCCGATTATTTTGAACAAACGAAAATTGCAACC
CAGCACGATAGGGCATGATTCCCGAATTATCAAACACCGAGATTACCTTCATTTTAAAGGATTT
Found at i:100098777 original size:3 final size:3
Alignment explanation
Indices: 100098771--100098926 Score: 70
Period size: 3 Copynumber: 52.0 Consensus size: 3
100098761 AAAAAAAGCT
* * * *
100098771 ATA ATA ATA ATA ATA GTA ATTA TTA ATA A-A GTA ATA ATA ATA AAA
1 ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
100098816 ATA ACA ATA GTA ATA TTA GTG ATA AAA ATA ATA GCT- ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
* * * * *
100098861 A-A CATA ATA ATG ATG ACA ATA TAGA ACA ATA ATA ATA ATA ATGA A-A
1 ATA -ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA AT-A ATA
*
100098907 ATA A-A ATA ATA TTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA
100098927 TTTTGTATTA
Statistics
Matches: 111, Mismatches: 32, Indels: 20
0.68 0.20 0.12
Matches are distributed among these distances:
2 7 0.06
3 96 0.86
4 8 0.07
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:100099146 original size:3 final size:3
Alignment explanation
Indices: 100099138--100099282 Score: 63
Period size: 3 Copynumber: 48.0 Consensus size: 3
100099128 ATTAACAATG
* * * *
100099138 ATA ATA ATA ATA ATA GTA ATA ATA TTA A-A ATA CAAA AAA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
* *
100099182 ATA AT- ATA ATA AGA ATA ATA A-A A-A ATA CT- ATA TATA A-A TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA -ATA
* * *
100099224 TATA CATAA ACA AAA AT- ATA CACTA CTA TATA ATA ATA ATA ATA ATA
1 -ATA -AT-A ATA ATA ATA ATA -A-TA ATA -ATA ATA ATA ATA ATA ATA
*
100099271 ATG ATA ATA ATA
1 ATA ATA ATA ATA
100099283 TTGAAATACA
Statistics
Matches: 110, Mismatches: 18, Indels: 28
0.71 0.12 0.18
Matches are distributed among these distances:
2 14 0.13
3 77 0.70
4 16 0.15
5 3 0.03
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:100099198 original size:29 final size:28
Alignment explanation
Indices: 100099138--100099323 Score: 82
Period size: 29 Copynumber: 6.3 Consensus size: 28
100099128 ATTAACAATG
* *
100099138 ATAAT-AATAATAATAGTAATAATATTAAA
1 ATAATAAAAAATAATA-TAAT-ATAATAAA
100099167 ATACA-AAAAAATAATATAATATAATAAGA
1 ATA-ATAAAAAATAATATAATATAATAA-A
* *
100099196 ATAATAAAAAATACTAT-ATATAAATATAT
1 ATAATAAAAAATAATATAATAT-AATA-AA
100099225 ATACATAAACAAA-AATATACACTACTATATAATA
1 ATA-ATAAA-AAATAATATA-A-TA-TA-ATAA-A
* * *
100099259 ATAAT-AATAATAATGATAATAATATTGAA
1 ATAATAAAAAATAAT-ATAAT-ATAATAAA
*
100099288 ATACA-AAAAAA-AACA-AATATAATAAAA
1 ATA-ATAAAAAATAATATAATATAAT-AAA
*
100099315 ATATTAAAA
1 ATAATAAAA
100099324 TAAAGTAATA
Statistics
Matches: 122, Mismatches: 14, Indels: 44
0.68 0.08 0.24
Matches are distributed among these distances:
26 4 0.03
27 12 0.10
28 12 0.10
29 35 0.29
30 27 0.22
31 8 0.07
32 8 0.07
33 9 0.07
34 7 0.06
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (28 bp):
ATAATAAAAAATAATATAATATAATAAA
Found at i:100099401 original size:132 final size:136
Alignment explanation
Indices: 100099197--100099563 Score: 328
Period size: 132 Copynumber: 2.6 Consensus size: 136
100099187 ATAATAAGAA
* **
100099197 TAATAAAAA-ATACTATATATAAATATATATACATAAACAAAAATATACACTACTATATAATAAT
1 TAATAAAAATAAACTATATATAAATATATATACATAAAC-AAAATATACAAAACTATATAATAAT
*
100099261 AAT-AATAATAATG-ATAATAATATTGAAATACAAAAA-AAAACA-AATA-TAATAAAAATATTA
65 AATAAATAATAATGAATAATAATATTGAAACACAAAAAGAAAACATAATATTAAT-AAAATATTA
100099321 AAATAAAG
129 AAATAAAG
* * *
100099329 TAATAAAAATAAACCTATATGTAAATATATATACATATAC-ATATATACTAAAAC-ATATACA-A
1 TAATAAAAATAAA-CTATATATAAATATATATACATAAACAAAATATAC-AAAACTATATA-ATA
* * * *
100099391 ATATTGATAATAATAATGATAATAATAATATTGAAACATAAAAAGCAAATATAATATTAATAAAA
63 ATAAT-A-AATAATAATG--AATAATAATATTGAAACACAAAAAGAAAACATAATATTAATAAAA
100099456 TATTAAAATAAAG
124 TATTAAAATAAAG
* * * *
100099469 TAAATAAAAATAATATTGA-ATATAAATATATATATACGTATATAATAAGAGTATACACTAA-TA
1 T-AATAAAAATAA-ACT-ATATAT-AA-ATATATATAC--ATA-AACAA-AATATACA-AAACTA
100099532 TATAATAATAAT-AATAATAATGAA-AAGTAATA
56 TATAATAATAATAAATAATAATGAATAA-TAATA
100099564 ATAATATATT
Statistics
Matches: 189, Mismatches: 19, Indels: 43
0.75 0.08 0.17
Matches are distributed among these distances:
132 26 0.14
133 6 0.03
134 24 0.13
135 10 0.05
138 21 0.11
139 4 0.02
140 22 0.12
141 19 0.10
142 6 0.03
143 17 0.09
145 13 0.07
146 1 0.01
147 3 0.02
148 17 0.09
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.30
Consensus pattern (136 bp):
TAATAAAAATAAACTATATATAAATATATATACATAAACAAAATATACAAAACTATATAATAATA
ATAAATAATAATGAATAATAATATTGAAACACAAAAAGAAAACATAATATTAATAAAATATTAAA
ATAAAG
Found at i:100099405 original size:12 final size:12
Alignment explanation
Indices: 100099390--100099419 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
100099380 AACATATACA
*
100099390 AATATTGATAAT
1 AATAATGATAAT
100099402 AATAATGATAAT
1 AATAATGATAAT
100099414 AATAAT
1 AATAAT
100099420 ATTGAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (12 bp):
AATAATGATAAT
Found at i:100099491 original size:135 final size:135
Alignment explanation
Indices: 100099255--100099552 Score: 342
Period size: 138 Copynumber: 2.2 Consensus size: 135
100099245 ACTACTATAT
* *
100099255 AATA-ATAATAATAATAATGATAATAATATTGAAATACAAAAAAAAACAAATATAATAAAAATAT
1 AATATATAATAATAATAATAATAATAATATTGAAACACAAAAAAAAACAAATATAATAAAAATAT
*
100099319 TAAAATAAAGTAATAAAAATAAACCTATATGTAAATAT-ATATACATATACATATATACTAAAAC
66 TAAAATAAAGTAATAAAAATAAA-CTATATG-AAATATAATATACATATACATATATAATAAAA-
100099383 ATATACA-
128 ATATACAC
* * * *
100099390 AATATTGATAATAATAATGATAATAATAATATTGAAACATAAAAAGCAAATATAATATTAAT-AA
1 AATA-T-ATAATAATAATAATAATAATAATATTGAAACACAAAAA-AAAACA-AATA-TAATAAA
* *
100099454 AATATTAAAATAAAGTAAATAAAAAT-AA-TAT-TG-AATATAAATATATATATACGTATATAAT
61 AATATTAAAATAAAGT-AATAAAAATAAACTATATGAAATAT-AATATACATATACATATATAAT
* *
100099515 AAGAGTATACAC
124 AAAAATATACAC
100099527 TAATATATAATAATAATAATAATAAT
1 -AATATATAATAATAATAATAATAAT
100099553 GAAAAGTAAT
Statistics
Matches: 140, Mismatches: 12, Indels: 21
0.81 0.07 0.12
Matches are distributed among these distances:
135 9 0.06
136 25 0.18
137 24 0.17
138 41 0.29
139 4 0.03
140 24 0.17
141 13 0.09
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.31
Consensus pattern (135 bp):
AATATATAATAATAATAATAATAATAATATTGAAACACAAAAAAAAACAAATATAATAAAAATAT
TAAAATAAAGTAATAAAAATAAACTATATGAAATATAATATACATATACATATATAATAAAAATA
TACAC
Found at i:100099541 original size:3 final size:3
Alignment explanation
Indices: 100099527--100099569 Score: 52
Period size: 3 Copynumber: 13.7 Consensus size: 3
100099517 GAGTATACAC
100099527 TAA TATA TAA TAA TAA TAA TAA TAA TGAA -AA GTAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA T-AA TAA -TAA TAA TAA TA
100099570 TATTAAATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
2 2 0.06
3 27 0.75
4 7 0.19
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:100100788 original size:15 final size:15
Alignment explanation
Indices: 100100768--100100798 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
100100758 GGGTTCAGTA
100100768 TTGGGTTTAATTTTG
1 TTGGGTTTAATTTTG
*
100100783 TTGGGTTTATTTTTG
1 TTGGGTTTAATTTTG
100100798 T
1 T
100100799 AAAAGGCCCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.10, C:0.00, G:0.26, T:0.65
Consensus pattern (15 bp):
TTGGGTTTAATTTTG
Found at i:100102722 original size:14 final size:14
Alignment explanation
Indices: 100102703--100102748 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
100102693 TTATGTTTAA
100102703 GTTTGGGCTATTGG
1 GTTTGGGCTATTGG
**
100102717 GTTTGGG-T-TTAA
1 GTTTGGGCTATTGG
*
100102729 GTTTGGGCCATTGG
1 GTTTGGGCTATTGG
100102743 GTTTGG
1 GTTTGG
100102749 TTTTAGGATA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
12 9 0.36
13 1 0.04
14 15 0.60
ACGTcount: A:0.09, C:0.07, G:0.41, T:0.43
Consensus pattern (14 bp):
GTTTGGGCTATTGG
Found at i:100102733 original size:26 final size:26
Alignment explanation
Indices: 100102697--100102753 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
100102687 TGGGTTTTAT
*
100102697 GTTTAAGTTTGGGCTATTGGGTTTGG
1 GTTTAAGTTTGGGCCATTGGGTTTGG
100102723 GTTTAAGTTTGGGCCATTGGGTTTGG
1 GTTTAAGTTTGGGCCATTGGGTTTGG
*
100102749 TTTTA
1 GTTTA
100102754 GGATATCTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.12, C:0.05, G:0.35, T:0.47
Consensus pattern (26 bp):
GTTTAAGTTTGGGCCATTGGGTTTGG
Found at i:100111491 original size:3 final size:3
Alignment explanation
Indices: 100111483--100111528 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
100111473 AATGACATTT
* * *
100111483 ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA TTA ATA GTA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
100111529 GTGAAAGTGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:100112317 original size:22 final size:22
Alignment explanation
Indices: 100112269--100112317 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
100112259 TAAGTCATGA
* * *
100112269 ATTTTTTTAAAAATAGATTAAT
1 ATTTTTTCAAAAATAAATAAAT
*
100112291 TTTTTTTCAAAAATAAATAAAT
1 ATTTTTTCAAAAATAAATAAAT
100112313 ATTTT
1 ATTTT
100112318 AAATTAACAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (22 bp):
ATTTTTTCAAAAATAAATAAAT
Found at i:100112696 original size:18 final size:19
Alignment explanation
Indices: 100112656--100112702 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
100112646 AATTAATAAT
*
100112656 TATATTTATTTTTTATGTAA
1 TATATTTA-TGTTTATGTAA
*
100112676 TATATTTATGTTTA-GTGA
1 TATATTTATGTTTATGTAA
*
100112694 TATAATTAT
1 TATATTTAT
100112703 AATTATATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 11 0.46
19 5 0.21
20 8 0.33
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.60
Consensus pattern (19 bp):
TATATTTATGTTTATGTAA
Found at i:100116598 original size:50 final size:50
Alignment explanation
Indices: 100116523--100116622 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
100116513 GTTGTACGGT
100116523 TATGAGCTAACGAAAATGTTTGTGTAGGCTTGATGCGATTTGGAAGATCA
1 TATGAGCTAACGAAAATGTTTGTGTAGGCTTGATGCGATTTGGAAGATCA
100116573 TATGAGCTAACGAAAATGTTTGTGTAGGCTTGATGCGATTTGGAAGATCA
1 TATGAGCTAACGAAAATGTTTGTGTAGGCTTGATGCGATTTGGAAGATCA
100116623 AAAGGTTAGT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.30, C:0.10, G:0.28, T:0.32
Consensus pattern (50 bp):
TATGAGCTAACGAAAATGTTTGTGTAGGCTTGATGCGATTTGGAAGATCA
Found at i:100117543 original size:20 final size:19
Alignment explanation
Indices: 100117492--100117545 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
100117482 AAAAAAAATG
* *
100117492 AAAATACTA-AAAACTGAA
1 AAAAAACTAGAAAAATGAA
*
100117510 AAAAAACTATAAAAATGAA
1 AAAAAACTAGAAAAATGAA
*
100117529 AAAAAGATTAGAAAAAT
1 AAAAA-ACTAGAAAAAT
100117546 TATTATAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 8 0.27
19 13 0.43
20 9 0.30
ACGTcount: A:0.70, C:0.06, G:0.07, T:0.17
Consensus pattern (19 bp):
AAAAAACTAGAAAAATGAA
Found at i:100117673 original size:12 final size:11
Alignment explanation
Indices: 100117650--100117682 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
100117640 AATTTTAAAA
100117650 TATAAAAA-AT
1 TATAAAAATAT
100117660 TATTAAAAATAT
1 TA-TAAAAATAT
100117672 TATAAAAATAT
1 TATAAAAATAT
100117683 AGAAAAGTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 2 0.10
11 15 0.71
12 4 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
TATAAAAATAT
Found at i:100117718 original size:20 final size:19
Alignment explanation
Indices: 100117695--100117737 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
100117685 AAAAGTGCAA
*
100117695 AAAAGTATAAAAAATTATAT
1 AAAAGTACAAAAAATTAT-T
*
100117715 AAAATTACAAAAAATTATT
1 AAAAGTACAAAAAATTATT
100117734 AAAA
1 AAAA
100117738 ATTTTCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (19 bp):
AAAAGTACAAAAAATTATT
Found at i:100117740 original size:30 final size:29
Alignment explanation
Indices: 100117638--100117739 Score: 93
Period size: 30 Copynumber: 3.5 Consensus size: 29
100117628 ATATATATGG
*
100117638 AAAATT-TT-AAAATATAAAAAATTATTAA
1 AAAATTATTAAAAATATAAAAAATTA-CAA
* * *
100117666 AAATATTA-TAAAAATATAGAAAAGTGCAA
1 AAA-ATTATTAAAAATATAAAAAATTACAA
* * *
100117695 AAAAGTATAAAAAATTATATAAAATTACAA
1 AAAATTATTAAAAA-TATAAAAAATTACAA
100117725 AAAATTATTAAAAAT
1 AAAATTATTAAAAAT
100117740 TTTCAAAATA
Statistics
Matches: 58, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
28 6 0.10
29 15 0.26
30 37 0.64
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (29 bp):
AAAATTATTAAAAATATAAAAAATTACAA
Found at i:100117747 original size:9 final size:10
Alignment explanation
Indices: 100117638--100117780 Score: 50
Period size: 10 Copynumber: 14.5 Consensus size: 10
100117628 ATATATATGG
100117638 AAAATT-TT-
1 AAAATTATTA
*
100117646 AAAA-TATAA
1 AAAATTATTA
100117655 AAAATTATTA
1 AAAATTATTA
100117665 AAAA-TATTA
1 AAAATTATTA
*
100117674 TAAAAATA-TA
1 -AAAATTATTA
* ***
100117684 GAAAAGTGCAA
1 -AAAATTATTA
* *
100117695 AAAAGTATAA
1 AAAATTATTA
100117705 AAAATTA-TA
1 AAAATTATTA
**
100117714 TAAAATTACAA
1 -AAAATTATTA
100117725 AAAATTATTA
1 AAAATTATTA
*
100117735 AAAATT-TTC
1 AAAATTATTA
*
100117744 AAAA-TAATA
1 AAAATTATTA
100117753 GAAAATTATAATA
1 -AAAATTAT--TA
* *
100117766 AAGATAATTA
1 AAAATTATTA
100117776 AAAAT
1 AAAAT
100117781 ATTTACAATT
Statistics
Matches: 102, Mismatches: 20, Indels: 24
0.70 0.14 0.16
Matches are distributed among these distances:
7 1 0.01
8 6 0.06
9 17 0.17
10 64 0.63
11 6 0.06
12 6 0.06
13 2 0.02
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (10 bp):
AAAATTATTA
Found at i:100118014 original size:17 final size:17
Alignment explanation
Indices: 100117992--100118063 Score: 63
Period size: 17 Copynumber: 3.9 Consensus size: 17
100117982 TTTTAGTTTG
100117992 TTTTATAATTTTTTAAT
1 TTTTATAATTTTTTAAT
* *
100118009 TTTTATATTATTTTGTAAA
1 TTTTATA--ATTTTTTAAT
* *
100118028 TTTTATTATTTTTAAAT
1 TTTTATAATTTTTTAAT
100118045 ATTTTACATAATTTTTTAA
1 -TTTT--ATAATTTTTTAA
100118064 AAAAAATTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
17 14 0.33
18 4 0.10
19 14 0.33
20 10 0.24
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (17 bp):
TTTTATAATTTTTTAAT
Found at i:100118029 original size:28 final size:28
Alignment explanation
Indices: 100117972--100118063 Score: 84
Period size: 28 Copynumber: 3.3 Consensus size: 28
100117962 GAAAAAAATG
*
100117972 TTTTTTATATTTTTAGT-TTGTTTTAT-AA
1 TTTTTTA-ATTTTTA-TATTATTTTATAAA
*
100118000 TTTTTTAATTTTTATATTATTTTGTAAA
1 TTTTTTAATTTTTATATTATTTTATAAA
* *
100118028 TTTTATT-ATTTTTA-AATATTTTACATAA
1 TTTT-TTAATTTTTATATTATTTTATA-AA
100118056 TTTTTTAA
1 TTTTTTAA
100118064 AAAAAATTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
26 1 0.02
27 24 0.44
28 27 0.50
29 2 0.04
ACGTcount: A:0.28, C:0.01, G:0.03, T:0.67
Consensus pattern (28 bp):
TTTTTTAATTTTTATATTATTTTATAAA
Found at i:100118031 original size:20 final size:19
Alignment explanation
Indices: 100117999--100118060 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
100117989 TTGTTTTATA
*
100117999 ATTTTTTAATTTTTATATT
1 ATTTTTAAATTTTTATATT
100118018 ATTTTGTAAA--TTT-TATT
1 ATTTT-TAAATTTTTATATT
* *
100118035 ATTTTTAAATATTTTACATA
1 ATTTTTAAAT-TTTTATATT
100118055 ATTTTT
1 ATTTTT
100118061 TAAAAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
16 4 0.11
17 9 0.26
18 3 0.09
19 8 0.23
20 11 0.31
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (19 bp):
ATTTTTAAATTTTTATATT
Found at i:100126074 original size:20 final size:20
Alignment explanation
Indices: 100126049--100126104 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
100126039 AAATAAGGGC
*
100126049 ACATGCTCGTGTGGCCTGGG
1 ACATGCCCGTGTGGCCTGGG
*
100126069 ACATGCCCGTGTGGCTTGGG
1 ACATGCCCGTGTGGCCTGGG
* *
100126089 ACATGGCCGTGGGGCC
1 ACATGCCCGTGTGGCC
100126105 AGGCTATGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.11, C:0.27, G:0.41, T:0.21
Consensus pattern (20 bp):
ACATGCCCGTGTGGCCTGGG
Found at i:100126696 original size:15 final size:15
Alignment explanation
Indices: 100126678--100126707 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
100126668 TATTTCATAA
100126678 TCTTATTAGCTTCAT
1 TCTTATTAGCTTCAT
100126693 TCTTATTAGCTTCAT
1 TCTTATTAGCTTCAT
100126708 CACTTACCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (15 bp):
TCTTATTAGCTTCAT
Found at i:100128458 original size:16 final size:16
Alignment explanation
Indices: 100128437--100128470 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
100128427 TTACTAAAGG
100128437 AACTCGTTTATTACGT
1 AACTCGTTTATTACGT
100128453 AACTCGTTTATTACGT
1 AACTCGTTTATTACGT
100128469 AA
1 AA
100128471 TTCCTTTACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (16 bp):
AACTCGTTTATTACGT
Found at i:100128478 original size:16 final size:16
Alignment explanation
Indices: 100128437--100128478 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
100128427 TTACTAAAGG
*
100128437 AACTCGTTTATTACGT
1 AACTCCTTTATTACGT
*
100128453 AACTCGTTTATTACGT
1 AACTCCTTTATTACGT
*
100128469 AATTCCTTTA
1 AACTCCTTTA
100128479 CCTCATGTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.10, T:0.45
Consensus pattern (16 bp):
AACTCCTTTATTACGT
Found at i:100130310 original size:16 final size:15
Alignment explanation
Indices: 100130289--100130336 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
100130279 GATGTGAATA
100130289 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
100130305 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
100130320 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
100130336 A
1 A
100130337 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:100130312 original size:24 final size:24
Alignment explanation
Indices: 100130285--100130340 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
100130275 TAATGATGTG
*
100130285 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
100130309 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
100130333 AATAATAA
1 AATAATAA
100130341 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:100130319 original size:8 final size:8
Alignment explanation
Indices: 100130285--100130336 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
100130275 TAATGATGTG
*
100130285 AATAATAA
1 AATATTAA
100130293 AATATATAA
1 AATAT-TAA
100130302 AATA-TAA
1 AATATTAA
100130309 AATATTAA
1 AATATTAA
*
100130317 AATATCAA
1 AATATTAA
*
100130325 AATATTAG
1 AATATTAA
100130333 AATA
1 AATA
100130337 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:100130579 original size:28 final size:27
Alignment explanation
Indices: 100130540--100130599 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 27
100130530 TATAGTTAAG
100130540 ATATATACATAAGATAACATGTAAAAAT
1 ATATATACATAAGATAACAT-TAAAAAT
* * * *
100130568 ATATATATATAATATAATATTAAAGAT
1 ATATATACATAAGATAACATTAAAAAT
100130595 ATATA
1 ATATA
100130600 CATAAAATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 11 0.39
28 17 0.61
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (27 bp):
ATATATACATAAGATAACATTAAAAAT
Found at i:100130604 original size:25 final size:25
Alignment explanation
Indices: 100130481--100130699 Score: 136
Period size: 25 Copynumber: 9.0 Consensus size: 25
100130471 TAAATACGTG
* *
100130481 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAGATATATACATAAT
* * * *
100130506 ATAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAGATATATACATAAT
* *
100130531 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAGATATATACATAAT
* * *
100130553 ATAACATGTAAAAATATATATATATAAT
1 ATAATAT-T--AAAGATATATACATAAT
*
100130581 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAGATATATACATAAT
* * * *
100130606 ATAGTATAAAATATATATACGTAAT
1 ATAATATTAAAGATATATACATAAT
* *
100130631 ATAGA-ATTTAA-A-ATATACCTAAT
1 ATA-ATATTAAAGATATATACATAAT
* *
100130654 AT-AT-TAAAAGA-ATATATATAAT
1 ATAATATTAAAGATATATACATAAT
*
100130676 ATAATATT-AAGAAATATA-ATAAT
1 ATAATATTAAAGATATATACATAAT
100130699 A
1 A
100130700 ACAAAAAATG
Statistics
Matches: 152, Mismatches: 30, Indels: 26
0.73 0.14 0.12
Matches are distributed among these distances:
21 4 0.03
22 27 0.18
23 28 0.18
24 8 0.05
25 65 0.43
27 1 0.01
28 19 0.12
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
ATAATATTAAAGATATATACATAAT
Found at i:100131262 original size:30 final size:30
Alignment explanation
Indices: 100131228--100131418 Score: 310
Period size: 30 Copynumber: 6.4 Consensus size: 30
100131218 AATGGAGCAA
*
100131228 GTGTGGCTAGTGGATTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
*
100131258 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAA
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
* * *
100131288 GAGTAGCTAGTAGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
*
100131318 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAA
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
*
100131348 GAGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
100131378 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
*
100131408 GAGTGGCTAGT
1 GTGTGGCTAGT
100131419 TGAGAAAAGT
Statistics
Matches: 147, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 147 1.00
ACGTcount: A:0.23, C:0.04, G:0.47, T:0.26
Consensus pattern (30 bp):
GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
Found at i:100131297 original size:60 final size:60
Alignment explanation
Indices: 100131198--100131418 Score: 343
Period size: 60 Copynumber: 3.7 Consensus size: 60
100131188 GGTGGAGCAA
* * ** ** * *
100131198 GTGTGGTTAGTGGAGTAGGTAATGGAGCAAGTGTGGCTAGTGGATTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAG
* *
100131258 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTAGCTAGTAGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAG
100131318 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAG
*
100131378 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
100131419 TGAGAAAAGT
Statistics
Matches: 148, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 148 1.00
ACGTcount: A:0.24, C:0.04, G:0.47, T:0.26
Consensus pattern (60 bp):
GTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAG
Found at i:100132184 original size:14 final size:14
Alignment explanation
Indices: 100132165--100132214 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
100132155 GAGTTGATTT
* *
100132165 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
100132179 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
100132194 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
100132208 TT-AAAAA
1 TTGAAAAA
100132215 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:100132326 original size:72 final size:73
Alignment explanation
Indices: 100132194--100132417 Score: 272
Period size: 76 Copynumber: 3.0 Consensus size: 73
100132184 AAAACAGAAA
* * ** *
100132194 TTGAAAAGCAG-AAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAAATTAAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATA
100132258 TGAGTTAATT
64 TGAGTTAATT
* * * *
100132268 TTGACAAACA-AAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATG
1 TTGAAAAACAGAAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
100132332 AGTTGATTTTT
66 AGTT-A--ATT
* *
100132343 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
100132408 AGTTGATT
66 AGTTAATT
100132416 TT
1 TT
100132418 TTTTACGAAC
Statistics
Matches: 127, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
72 34 0.27
73 5 0.04
74 24 0.19
75 11 0.09
76 53 0.42
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (73 bp):
TTGAAAAACAGAAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTAATT
Found at i:100132443 original size:14 final size:14
Alignment explanation
Indices: 100132424--100132451 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
100132414 TTTTTTTTAC
100132424 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100132438 GAACAGAAATTGAA
1 GAACAGAAATTGAA
100132452 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:100132497 original size:91 final size:88
Alignment explanation
Indices: 100132343--100132527 Score: 255
Period size: 91 Copynumber: 2.1 Consensus size: 88
100132333 GTTGATTTTT
* *
100132343 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
100132408 AGTTGATTTTTTTTACGAACAGAAA
66 AGTT-A-ATTTTTGACAAACAGAAA
* * *
100132433 TTGAAGAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATA
100132497 TGAGTTAATTTTTGACAAACAGAAA
64 TGAGTTAATTTTTGACAAACAGAAA
100132522 TTGAAA
1 TTGAAA
100132528 TTACCTCAGC
Statistics
Matches: 84, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
89 34 0.40
90 14 0.17
91 36 0.43
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.26
Consensus pattern (88 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTAATTTTTGACAAACAGAAA
Found at i:100132567 original size:73 final size:73
Alignment explanation
Indices: 100132439--100132893 Score: 349
Period size: 73 Copynumber: 5.9 Consensus size: 73
100132429 GAAATTGAAG
* ** *
100132439 AACAGAAATTGAAAAGACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
100132504 ATTTTTGACA
64 ATTTTTGACA
* * *
100132514 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
*
100132579 TTTTGAAA
66 TTTTGACA
* * *
100132587 AACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATATGAGTTGA
1 AACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-A
* * *
100132652 TTTTTTTTACG
64 -ATTTTTGACA
* * ** * *** * * *
100132663 AACAAAAATTGAAGAACAGAAAT-TGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCACCTC
1 AACAGAAATTG-A-AA-ATACCTCAG-CGTGTCC-C-G-A-G-G-CTC-A-ACTC-----ACCTC
100132727 TCGCAATATGAGTTAATTTTTGACA
49 TCGCAATATGAGTTAATTTTTGACA
* *
100132752 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
* *
100132817 TATT-AAA
66 TTTTGACA
* * * * ** *
100132824 AAGCATAAATTGAAAATACCTCAACATG-CCCTGAGGCTCAACTCAACTCTTACAATATGAGTTG
1 AA-CAGAAATTGAAAATACCTCAGCGTGTCCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTA
100132888 ATTTTT
64 ATTTTT
100132894 TTGAAACACA
Statistics
Matches: 299, Mismatches: 58, Indels: 48
0.74 0.14 0.12
Matches are distributed among these distances:
72 7 0.02
73 130 0.43
74 49 0.16
75 24 0.08
76 14 0.05
77 3 0.01
78 9 0.03
79 1 0.00
80 3 0.01
81 2 0.01
82 2 0.01
83 2 0.01
84 3 0.01
85 2 0.01
86 8 0.03
87 3 0.01
88 1 0.00
89 17 0.06
90 1 0.00
91 18 0.06
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (73 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
TTTTGACA
Found at i:100132654 original size:238 final size:239
Alignment explanation
Indices: 100132186--100133561 Score: 1409
Period size: 238 Copynumber: 5.7 Consensus size: 239
100132176 AAATTGAAAA
* *
100132186 AACAGAAATTGAA-AAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTC
1 AACAGAAATTGAAGAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTC
* *
100132250 TCGCAATATGAGTTAA-TTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAA
65 TCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAA
* * *
100132314 CTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTC
130 CTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACATAAATTTGAAAATACCTCAGCGTGTC
100132379 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACG
194 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACG
*
100132425 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
*
100132490 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAAC
* * *
100132555 TCACCTTTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCT
131 TCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTTGAAAATACCTCAGCGTGTCCT
*
100132619 GAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTTTACG
196 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACG
* *
100132663 AACAAAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGTCGAGGCTCAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
*
100132728 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAAC
* * * *
100132793 TCACCTCTCGCAATATGAGTTGA-TTATT-AAAAAGCATAAA-TTGAAAATACCTCAACATGCCC
131 TCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA-CATAAATTTGAAAATACCTCAGCGTGTCC
* ** *
100132855 TGAGGCTCAACTCAACTCTTACAATATGAGTTGATTTTTTTGAAACACAG
195 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT----TAC-G
* * * * * * *
100132905 AAATAAAAAAAAAACAGAAATTAAAG-ACGGAATTTGAAAAGACCTCGGCGTGTG-GCCCAAGAC
1 ------------AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAG-CCGAGGC
* * * **
100132968 TTAACTCACCTCTCACAATGAGTTGATTTTTGAAAAGTAGAAATTGA-AAACGCAGAAATTGAAA
53 TCAACTCACCTCTCGCAAT-A--TGA--GTT---AA-T---TTTTGACAAA--CAGAAATTGAAA
* *
100133032 ATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATGTGAGTTGATTTTTTTTTTGATAA
104 ATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTGA-AA
*
100133097 AA-ATAGAATTTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
164 AACATA-AATTTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
100133161 A---TTTTGACG
228 ATTTTTTTTACG
* * *
100133170 AACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
* *
100133235 CGCAATATGAGTTGGATTTTTGAAAAAAAATTGACAAACGGAAATTGAAAATACCTCAGC--GTC
66 CGCAATATGAGTT--A-ATTT---------TTGACAAACAGAAATTGAAAATACCTCAGCGTGTC
**
100133298 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGAA-ATAAA-TTGAAA
119 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTGAAA-AACATAAATTTGAAA
* * * * *
100133361 ATACCTCAACGTGTCTTGAGGCTAAACTTACCTCTCGCAATATGAGTTGAATTTTTTT---
179 ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACG
* ** *
100133419 ----G--A---AA-AACAGAAATT-AAAATTACCTCAGC--GTGCCCCGAGGCTCAACTCACTTC
1 AACAGAAATTGAAGAACAGAAATTGAAAA-GACCTCAGCATGTGAGCCGAGGCTCAACTCACCTC
* * * * **
100133471 TCGCAATATGAGTTGA-TTTTGA-AAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAA
65 TCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAA
*
100133534 CTCATCTCTCGCAATATGAGTTGATTTT
130 CTCACCTCTCGCAATATGAGTTGATTTT
100133562 CCTTAAAAAG
Statistics
Matches: 988, Mismatches: 85, Indels: 146
0.81 0.07 0.12
Matches are distributed among these distances:
221 4 0.00
223 21 0.02
224 4 0.00
225 37 0.04
233 2 0.00
237 95 0.10
238 246 0.25
239 93 0.09
240 75 0.08
241 2 0.00
242 1 0.00
243 1 0.00
245 1 0.00
248 2 0.00
249 53 0.05
250 4 0.00
251 54 0.05
252 5 0.01
253 79 0.08
254 61 0.06
255 4 0.00
256 3 0.00
258 2 0.00
261 2 0.00
262 1 0.00
264 3 0.00
265 5 0.01
266 61 0.06
270 4 0.00
271 7 0.01
272 3 0.00
273 53 0.05
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.27
Consensus pattern (239 bp):
AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTTGAAAATACCTCAGCGTGTCCT
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACG
Found at i:100133016 original size:14 final size:15
Alignment explanation
Indices: 100132997--100133032 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
100132987 GAGTTGATTT
*
100132997 TTGAAAA-GTAGAAA
1 TTGAAAACGCAGAAA
100133011 TTGAAAACGCAGAAA
1 TTGAAAACGCAGAAA
100133026 TTGAAAA
1 TTGAAAA
100133033 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.56, C:0.06, G:0.19, T:0.19
Consensus pattern (15 bp):
TTGAAAACGCAGAAA
Found at i:100133123 original size:80 final size:79
Alignment explanation
Indices: 100133011--100133165 Score: 247
Period size: 80 Copynumber: 1.9 Consensus size: 79
100133001 AAAGTAGAAA
** * *
100133011 TTGAAAACGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATGTG
1 TTGAAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
100133076 AGTTGATTTTTTTT
66 AGTTGATTTTTTTT
* *
100133090 TTGATAAAAATAGAATTTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGA-AAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
100133155 GAGTTGATTTT
65 GAGTTGATTTT
100133166 GACGAACAGA
Statistics
Matches: 69, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 4 0.06
80 65 0.94
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (79 bp):
TTGAAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTT
Found at i:100133163 original size:168 final size:164
Alignment explanation
Indices: 100132938--100133495 Score: 525
Period size: 168 Copynumber: 3.4 Consensus size: 164
100132928 AAGACGGAAT
* * * * * *
100132938 TTGAAAAGACCTCGGCGTGTGGCCCAAGACTTAACTCACCTCTCAC-A-ATGAGTTGATTTTTGA
1 TTGAAAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGA
100133001 AAAGTAGAAATTGAAAACGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTC
63 AAA-TAGAAATTGAAAA--CAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTC
* * * *
100133066 TCACAATGTGAGTTGATTTTTTTTTTGATAAAAATAGAAT
125 TCGCAATATGAGTTGATTTTTTTTTTGATAAAAACAGAAA
*
100133106 TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGA
1 TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA-AA
* **
100133171 ACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTC
65 ATAGAAATTG-AAAACAGAAATTGAAAATACCTCAG--CGTGTCCCGAGGCTCAACTCACCTCTC
****** * *
100133236 GCAATATGAGTTGGATTTTTGAAAAAAAATTGACAAACGGAAA
127 GCAATATGAGTT-GATTTTT--TTTTTGA-T-AAAAACAGAAA
** ****
100133279 TTGAAAATACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-TTTT
1 TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAA
* * * ** * *
100133341 TTGAAA--G--AA-ATAAATTGAAAATACCTCAACGTGTCTTGAGGCTAAACTTACCTCTCGCAA
66 TAGAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
*
100133401 TATGAGTTGA--ATTTTTTTG--AAAAACAGAAA
131 TATGAGTTGATTTTTTTTTTGATAAAAACAGAAA
* *
100133431 TT-AAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAA
1 TTGAAAA-TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA
100133495 A
65 A
100133496 CAAAAATTAA
Statistics
Matches: 320, Mismatches: 55, Indels: 43
0.77 0.13 0.10
Matches are distributed among these distances:
151 4 0.01
152 20 0.06
154 38 0.12
158 2 0.01
160 2 0.01
161 33 0.10
163 18 0.06
164 2 0.01
166 41 0.13
167 16 0.05
168 68 0.21
169 11 0.03
171 41 0.13
172 1 0.00
173 23 0.07
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (164 bp):
TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAA
TAGAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTTTTTTGATAAAAACAGAAA
Found at i:100133187 original size:14 final size:14
Alignment explanation
Indices: 100133170--100133198 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
100133160 GATTTTGACG
100133170 AACAGAAATTGAAA
1 AACAGAAATTGAAA
100133184 AACAGAAATTGAAA
1 AACAGAAATTGAAA
100133198 A
1 A
100133199 TACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:100133421 original size:76 final size:73
Alignment explanation
Indices: 100133276--100133561 Score: 350
Period size: 76 Copynumber: 3.9 Consensus size: 73
100133266 TGACAAACGG
*
100133276 AAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTT
100133339 TTTTGAAAGAAA
63 TTTTGAAA-AAA
* *
100133351 TAAATTGAAAATACCTCAACGTGTCTTGAGGCTAAACTTACCTCTCGCAATATGAGTTGAATTTT
1 -AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTT
100133416 TTTGAAAAACA
64 TTTGAAAAA-A
* * ** *
100133427 GAAATT-AAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA---T
1 -AAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
100133488 TTTGAAAACAA
64 TTTGAAAA-AA
* *
100133499 AAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
100133562 CCTTAAAAAG
Statistics
Matches: 183, Mismatches: 17, Indels: 22
0.82 0.08 0.10
Matches are distributed among these distances:
71 48 0.26
72 14 0.08
73 1 0.01
74 1 0.01
75 7 0.04
76 74 0.40
77 1 0.01
78 36 0.20
79 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.31
Consensus pattern (73 bp):
AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGAAAAAA
Found at i:100133580 original size:147 final size:149
Alignment explanation
Indices: 100133265--100133583 Score: 395
Period size: 147 Copynumber: 2.1 Consensus size: 149
100133255 TGAAAAAAAA
* * **
100133265 TTGACAAACGGAAATTGAAAA-TACCTCAGCGT--CTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATT-AAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
* *
100133327 AGTTGATTTTTTTTTTGAAAGAAATAAATTGAAAATACCTCAACGTGTCTTGAGGCTAAACTTAC
65 AGTTGA-----TTTTTGAAAGAAATAAATTAAAAATACCTCAACGTGTCTTGAGGCTAAACTCAC
*
100133392 CTCTCGCAATATGAGTTGAATTTTT
125 CTCTCGCAATATGAGTTGAATTTTC
*
100133417 TTGAAAAACAGAAATTAAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
* *
100133482 GTTGA-TTTTGAAA-ACAA-AAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTC
66 GTTGATTTTTGAAAGA-AATAAATTAAAAATACCTCAACGTGTCTTGAGGCTAAACTCACCTCTC
100133544 GCAATATGAGTTG-ATTTTCC
130 GCAATATGAGTTGAATTTT-C
100133564 TT-AAAAAGCATG-AATTAAAA
1 TTGAAAAA-CA-GAAATTAAAA
100133584 ACATCAAAAT
Statistics
Matches: 150, Mismatches: 10, Indels: 19
0.84 0.06 0.11
Matches are distributed among these distances:
146 10 0.07
147 67 0.45
148 11 0.07
151 4 0.03
152 25 0.17
154 33 0.22
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30
Consensus pattern (149 bp):
TTGAAAAACAGAAATTAAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAGAAATAAATTAAAAATACCTCAACGTGTCTTGAGGCTAAACTCACCTCTCG
CAATATGAGTTGAATTTTC
Found at i:100149638 original size:12 final size:12
Alignment explanation
Indices: 100149618--100149653 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
100149608 TGGGATATGC
*
100149618 AATGTATGAATG
1 AATGCATGAATG
100149630 AATGCATGAATG
1 AATGCATGAATG
100149642 AATGCATGAATG
1 AATGCATGAATG
100149654 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:100151200 original size:7 final size:7
Alignment explanation
Indices: 100151188--100151228 Score: 64
Period size: 7 Copynumber: 5.6 Consensus size: 7
100151178 ATAATAAAAT
100151188 ATATAAA
1 ATATAAA
100151195 ATATAAA
1 ATATAAA
100151202 ATATAAA
1 ATATAAA
100151209 ATATTAAA
1 ATA-TAAA
100151217 ATATCAAA
1 ATAT-AAA
100151225 ATAT
1 ATAT
100151229 TAGAATAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 18 0.56
8 14 0.44
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (7 bp):
ATATAAA
Found at i:100151211 original size:23 final size:23
Alignment explanation
Indices: 100151181--100151228 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
100151171 GATGTGAATA
100151181 ATAAAATATATAAAATAT-AAAAT
1 ATAAAATAT-TAAAATATCAAAAT
100151204 ATAAAATATTAAAATATCAAAAT
1 ATAAAATATTAAAATATCAAAAT
100151227 AT
1 AT
100151229 TAGAATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (23 bp):
ATAAAATATTAAAATATCAAAAT
Found at i:100151218 original size:8 final size:8
Alignment explanation
Indices: 100151177--100151235 Score: 68
Period size: 8 Copynumber: 7.5 Consensus size: 8
100151167 TAATGATGTG
*
100151177 AATAATAA
1 AATATTAA
100151185 AATATATAA
1 AATAT-TAA
100151194 AATA-TAA
1 AATATTAA
100151201 AATA-TAA
1 AATATTAA
100151208 AATATTAA
1 AATATTAA
*
100151216 AATATCAA
1 AATATTAA
*
100151224 AATATTAG
1 AATATTAA
100151232 AATA
1 AATA
100151236 ATAATAATTA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
7 14 0.31
8 24 0.53
9 7 0.16
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:100151246 original size:31 final size:30
Alignment explanation
Indices: 100151177--100151246 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 30
100151167 TAATGATGTG
*
100151177 AATAA-TAAAATATATAAAATATAAAATAT
1 AATAATTAAAATATACAAAATATAAAATAT
* *
100151206 AAAATATTAAAATAT-CAAAATATTAGAATAAT
1 AATA-ATTAAAATATACAAAATA-TAAAAT-AT
100151238 AATAATTAA
1 AATAATTAA
100151247 TATTGACAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
29 3 0.09
30 7 0.21
31 18 0.55
32 5 0.15
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (30 bp):
AATAATTAAAATATACAAAATATAAAATAT
Found at i:100151452 original size:22 final size:25
Alignment explanation
Indices: 100151389--100151480 Score: 82
Period size: 25 Copynumber: 3.7 Consensus size: 25
100151379 CGTGATAATA
*
100151389 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAGTG
*
100151414 TTAAAAATACATACATAATATAG-G
1 TTAAAAATATATACATAATATAGTG
* * *
100151438 -T-AAGATATATACATAAGATAACATG
1 TTAAAAATATATACATAATAT-A-GTG
* *
100151463 TAAAAAATATATATATAA
1 TTAAAAATATATACATAA
100151481 ATAATATAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
22 15 0.28
23 2 0.04
24 1 0.02
25 22 0.42
27 13 0.25
ACGTcount: A:0.54, C:0.05, G:0.09, T:0.32
Consensus pattern (25 bp):
TTAAAAATATATACATAATATAGTG
Done.