Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 31 of 325
Found at i:9272573 original size:16 final size:16
Alignment explanation
Indices: 9272551--9272587 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
9272541 AATTTTATTT
9272551 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
9272568 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
9272583 TAATA
1 TAATA
9272588 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:9275863 original size:3 final size:3
Alignment explanation
Indices: 9275855--9275891 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
9275845 CTACTTTAAT
9275855 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
9275892 GTGTTGTCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:9276290 original size:21 final size:19
Alignment explanation
Indices: 9276254--9276297 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
9276244 TACTACGTTC
*
9276254 TATATATTTTTATATTATG
1 TATATATTTTAATATTATG
9276273 TATATATTTTAA-ATTAT-
1 TATATATTTTAATATTATG
9276290 TATATATT
1 TATATATT
9276298 AAGTATTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.33
18 5 0.21
19 11 0.46
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TATATATTTTAATATTATG
Found at i:9276293 original size:17 final size:18
Alignment explanation
Indices: 9276254--9276297 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
9276244 TACTACGTTC
*
9276254 TATATATTTTTATATTATG
1 TATATA-TTTTAAATTATG
9276273 TATATATTTTAAATTAT-
1 TATATATTTTAAATTATG
9276290 TATATATT
1 TATATATT
9276298 AAGTATTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.33
18 10 0.42
19 6 0.25
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TATATATTTTAAATTATG
Found at i:9276419 original size:11 final size:13
Alignment explanation
Indices: 9276391--9276475 Score: 54
Period size: 13 Copynumber: 6.6 Consensus size: 13
9276381 TCATTTCTAG
9276391 TATATGTATATAT
1 TATATGTATATAT
9276404 TATATGTA-AT-T
1 TATATGTATATAT
*
9276415 TATATATTATGTATAT
1 TATAT-GTA--TATAT
* *
9276431 TATTAT-T-TCTAG
1 TA-TATGTATATAT
9276443 TATATGTATATAT
1 TATATGTATATAT
* *
9276456 TATAGGTATATCT
1 TATATGTATATAT
9276469 T-TATGTA
1 TATATGTA
9276476 AAATTGGTGT
Statistics
Matches: 56, Mismatches: 8, Indels: 17
0.69 0.10 0.21
Matches are distributed among these distances:
11 9 0.16
12 15 0.27
13 23 0.41
15 3 0.05
16 3 0.05
17 3 0.05
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.54
Consensus pattern (13 bp):
TATATGTATATAT
Found at i:9276775 original size:18 final size:18
Alignment explanation
Indices: 9276716--9276886 Score: 258
Period size: 18 Copynumber: 9.6 Consensus size: 18
9276706 CAATGATATA
9276716 CAATCTTAGATATGATATG
1 CAATCTTAGATATGAT-TG
*
9276735 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTG
9276752 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTG
9276770 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTG
*
9276788 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTG
9276805 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTG
*
9276823 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTG
9276840 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTG
* *
9276858 AAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TG
9276877 CAATCTTAGA
1 CAATCTTAGA
9276887 AGATATGATT
Statistics
Matches: 139, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
17 48 0.35
18 66 0.47
19 25 0.18
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (18 bp):
CAATCTTAGATATGATTG
Found at i:9276779 original size:35 final size:36
Alignment explanation
Indices: 9276708--9276886 Score: 258
Period size: 35 Copynumber: 5.0 Consensus size: 36
9276698 ATAATCTTCA
*
9276708 ATGATATACAATCTTAGATATGATATGCAATCTTAGAT
1 ATGAT-TACAATCTTAGATATGAT-TACAATCTTAGAT
*
9276746 ATGA-TACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATTACAATCTTAGATATGATTACAATCTTAGAT
*
9276781 ATGATTGCAATCTTAGATATGA-TACAATCTTAGAT
1 ATGATTACAATCTTAGATATGATTACAATCTTAGAT
*
9276816 ATGATTGCAATCTTAGATATGA-TACAATCTTAGAT
1 ATGATTACAATCTTAGATATGATTACAATCTTAGAT
9276851 ATGATTGA-AATCTTAGATATGATATACAATCTTAGA
1 ATGATT-ACAATCTTAGATATGAT-TACAATCTTAGA
9276887 AGATATGATT
Statistics
Matches: 134, Mismatches: 3, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
35 84 0.63
36 34 0.25
37 12 0.09
38 4 0.03
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.37
Consensus pattern (36 bp):
ATGATTACAATCTTAGATATGATTACAATCTTAGAT
Found at i:9276795 original size:53 final size:53
Alignment explanation
Indices: 9276716--9276886 Score: 274
Period size: 53 Copynumber: 3.2 Consensus size: 53
9276706 CAATGATATA
9276716 CAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTG
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATACAATCTTAGATATGATTG
9276770 CAATCTTAGATATGATTGCAATCTTAGATATGATACAATCTTAGATATGATTG
1 CAATCTTAGATATGATTGCAATCTTAGATATGATACAATCTTAGATATGATTG
* *
9276823 CAATCTTAGATATGA-TACAATCTTAGATATGATTGA-AATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGA-T-ACAATCTTAGATATGAT-TG
9276877 CAATCTTAGA
1 CAATCTTAGA
9276887 AGATATGATT
Statistics
Matches: 112, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
52 16 0.14
53 68 0.61
54 28 0.25
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (53 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATACAATCTTAGATATGATTG
Found at i:9277417 original size:15 final size:16
Alignment explanation
Indices: 9277367--9277432 Score: 73
Period size: 16 Copynumber: 3.9 Consensus size: 16
9277357 TCTAAACCAA
9277367 TATATAATATATTTTT
1 TATATAATATATTTTT
9277383 TATATAAT-TATTATTCT
1 TATATAATATATT-TT-T
9277400 TATA-AATATATTTTT
1 TATATAATATATTTTT
9277415 TATTATATATTATATTTT
1 TA-TATA-A-TATATTTT
9277433 AAATTTATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
15 7 0.16
16 17 0.40
17 10 0.23
18 1 0.02
19 8 0.19
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TATATAATATATTTTT
Found at i:9280008 original size:3 final size:3
Alignment explanation
Indices: 9279952--9279999 Score: 53
Period size: 3 Copynumber: 15.7 Consensus size: 3
9279942 AAGTACCTAT
* *
9279952 TAA TAA TAT TATA TAA -ATA TAA TAA TAA TAA TAA TAA TAA CAA TAA
1 TAA TAA TAA TA-A TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
9279998 TA
1 TA
9280000 GCAATAATAG
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
2 1 0.03
3 34 0.89
4 3 0.08
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:9280214 original size:21 final size:20
Alignment explanation
Indices: 9280166--9280218 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
9280156 CACTAATATT
*
9280166 TATAAATAATAATAGTAATG
1 TATAAATAATATTAGTAATG
9280186 TA-ATAATAATATTAAGT-ATAG
1 TATA-AATAATATT-AGTAAT-G
9280207 TATAAATAATAT
1 TATAAATAATAT
9280219 GTACATAACA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 1 0.04
20 12 0.43
21 14 0.50
22 1 0.04
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.38
Consensus pattern (20 bp):
TATAAATAATATTAGTAATG
Found at i:9280319 original size:3 final size:3
Alignment explanation
Indices: 9280311--9280443 Score: 119
Period size: 3 Copynumber: 43.3 Consensus size: 3
9280301 ATACACTATA
*
9280311 AAT AAT AAT AGT AA- ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
9280356 AAT AAT AAT AGT ATT AAGT -AT AGT -AT AAAT AAT ATGT ACAT AAC AGT
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT -AAT AAT A-AT A-AT AAT AAT
*
9280403 AAT AAT AAT AAGT AAC AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT A
9280444 TAGAAATTCA
Statistics
Matches: 106, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
2 3 0.03
3 92 0.87
4 11 0.10
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:9280501 original size:16 final size:16
Alignment explanation
Indices: 9280468--9280500 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9280458 AACTAAACAT
*
9280468 AATATAATAATATTAA
1 AATAAAATAATATTAA
9280484 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
9280499 AA
1 AA
9280501 AATACTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:9282336 original size:14 final size:15
Alignment explanation
Indices: 9282312--9282340 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
9282302 CTTTTTTTTT
9282312 GAAAGGCAGAAATTG
1 GAAAGGCAGAAATTG
9282327 GAAA-GCAGAAATTG
1 GAAAGGCAGAAATTG
9282341 AAAATACCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.07, G:0.31, T:0.14
Consensus pattern (15 bp):
GAAAGGCAGAAATTG
Found at i:9282838 original size:72 final size:72
Alignment explanation
Indices: 9282648--9284209 Score: 1287
Period size: 72 Copynumber: 20.8 Consensus size: 72
9282638 AAAAAATGCC
* ** * * *
9282648 AATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCATTATGAGTTGATTTTTTTTTTGAAA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-----TTTTTGAAA
*
9282713 GATAGAAATTGAA
61 -ACAGAAATTGAA
* * *
9282726 AATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC
1 AATACCTCAGC--GTG-TCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAC
*
9282790 ATAAATTGAA
63 AGAAATTGAA
* * *
9282800 AATACCTCAACGTGTCTTGAGGTTCAACTCA-TTACTCGCAATATGAGTTGAATTTTGAAAACAG
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCACTT-CTCGCAATATGAGTTGATTTTTGAAAACAG
9282864 AAATT-AA
65 AAATTGAA
* * * * * **
9282871 AATTACCTTAGTGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTCGGTTTTTTTTTGAAA
1 AA-TACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGA----GTTGATTTTTG-AA
9282936 AACAGAAATTGAA
60 AACAGAAATTGAA
* * * * * *
9282949 AATACATCAGCATGTCTTGAGGCTCAACTCATTTCTTGCAATCTGAGTTGAATTTTGAAAACAGA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGA
9283014 AATTGAA
66 AATTGAA
* ** * * * *
9283021 ATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTG-AAACATA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGA
9283085 AATTAAGAA
66 AATT--GAA
* ** * * ** * * * * *
9283094 ACAAAAAT-TGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTT-AT
1 A-ATACCTCAG-C-GTGTCT-TGAG-G-CTC-A-ACTC-ACT----TCTCGCAATATGAGTTGA-
*
9283157 TTTTTTTTGAAAGATAGAAATTGAA
52 ---TTTTTGAAA-ACAGAAATTGAA
* * *
9283182 AATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC
1 AATACCTCAGC--GTG-TCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAC
*
9283246 ATAAATTGAA
63 AGAAATTGAA
* * * *
9283256 AATACCTCAACGTGTCTTGAGGTTCAACTCA-TTACTCGCAATATGAGTTGAATTTTGAAAAGAG
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCACTT-CTCGCAATATGAGTTGATTTTTGAAAACAG
9283320 AAATTGAA
65 AAATTGAA
* * *
9283328 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTT-TCGCAATATGAGTCGATTTTTTTTTTGAA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCA-CTTCTCGCAATATGAGTTGA-----TTTTTG-A
9283392 AAACAGAAATTGAA
59 AAACAGAAATTGAA
* * * * *
9283406 AATACCTCAGCATATCTTGAGGCTCAACTCATTTCTCGCAATTTGAGTTGACTTTTGAAAACAGA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGA
9283471 AATTGAA
66 AATTGAA
* * * * *
9283478 ATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAACATA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGA
9283542 AATTAAGAA
66 AATT--GAA
* ** * * ** * * * * * * *
9283551 ACAAAAAT-TGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGCATTATGAGTTAAT
1 A-ATACCTCAG-C-GTGTCT-TGAG-G-CTC-A-ACTC-ACT----TCTCGCAATATGAGTTGA-
*
9283615 TTTTTTTGAAAGATAGAAATTGAA
52 --TTTTTGAAA-ACAGAAATTGAA
* * *
9283639 AATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC
1 AATACCTCAGC--GTG-TCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAC
*
9283703 ATAAATTGAA
63 AGAAATTGAA
* * *
9283713 AATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGA
9283778 AATTGAA
66 AATTGAA
* *** *
9283785 ATTACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAACAGA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGA
9283849 AATTGAA
66 AATTGAA
* ** *
9283856 ATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA----TTTTTG-AAA
9283921 ACAGAAATTGAA
61 ACAGAAATTGAA
* * *
9283933 AATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGA
9283998 AATTGAA
66 AATTGAA
* * * *
9284005 ATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAACAACA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTGAA-AACA
9284070 GAAATTGAA
64 GAAATTGAA
* * * * *
9284079 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTGACAACA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTTGAAAACA
9284144 GAAATTGAA
64 GAAATTGAA
* * * *
9284153 ATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTG-ATTTTT
9284210 TTTGAAAAAT
Statistics
Matches: 1218, Mismatches: 183, Indels: 171
0.77 0.12 0.11
Matches are distributed among these distances:
71 93 0.08
72 470 0.39
73 38 0.03
74 189 0.16
75 47 0.04
76 12 0.01
77 114 0.09
78 104 0.09
79 3 0.00
80 41 0.03
81 5 0.00
82 4 0.00
83 6 0.00
84 3 0.00
85 33 0.03
86 2 0.00
87 12 0.01
88 22 0.02
89 6 0.00
90 14 0.01
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.31
Consensus pattern (72 bp):
AATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGA
AATTGAA
Found at i:9283285 original size:307 final size:289
Alignment explanation
Indices: 9282327--9284856 Score: 2021
Period size: 307 Copynumber: 8.3 Consensus size: 289
9282317 GCAGAAATTG
* * * *
9282327 GAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGACGCTCAACTCACCTCTCACAATATGAGTT
1 GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * * * *
9282392 GATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGCGTCCTGAGGCTCAACTCGCCTCTCGC-A
66 GAATTTTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAA
* * * *
9282456 -ATGAGTTGATTTTTTTGAAAGACAAAAATTG-AA-AATACCTCAGCATGTCTTGAGGCTCAACT
130 TATGAGTTGA--ATTTTGAAA-ACATAAATTGAAATAATACCTCAGCGTGTCCTGAGGCTCAACT
* *
9282518 CATTTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGA
192 CATTTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC-CGA
** * * *
9282583 GGCTCAACTCATTTCTCGGAATATGAATTGAATTTT
254 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * *
9282619 G-AAACATAAATTAAGAAACAAAAAATGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTC
1 GAAAACAGAAATT--G--------AA----AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* * * * * * *
9282683 TTGCATTATGAGTTGATTTTTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAAC-CG
52 TCGCAATATGAGTTGA-----ATTTTGAAA-ACAGAAATTGAAAATACCTCA--ACGTG-TCTTG
* * *
9282747 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTG-AA-AATACCTCAA
108 AGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACATAAATTGAAATAATACCTCAG
* * * * *
9282810 CGTGTCTTGAGGTTCAACTCATTACTCGCAATATGAGTTGAATTTTGAAAACAGAAATTAAAATT
173 CGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATT
* * * **
9282875 ACCTTAGTGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTCGGTTTTTTTTT
238 ACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGA----GTTGATTTTT
* * * ** * *
9282932 GAAAAACAGAAATTGAAAATACATCAGCATGTCTTGAGGCTCAACTCATTTCTTGCAATCTGAGT
1 G-AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
9282997 TGAATTTTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCACAA
65 TGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAA
* *
9283062 TATGAGTTGAATTTTG-AAACATAAATTAAGAAACAAAAATTGCCAATACCTCAGCGTGCCCCGA
130 TATGAGTTGAATTTTGAAAACATAAATT--G------AAA-T---AATACCTCAGCGTGTCCTGA
** * * *
9283126 GGCTCAACTCACCTCTCGCATTATGAGTT-ATTTTTTTTTGAAAGATAGAAATTGAAAATACCTC
183 GGCTCAACTCATTTCTCGCAATATGAGTTGA----TTTTTGAAA-ACAGAAATTGAAATTACCTC
*
9283190 AGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
243 AGC--GTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * * * *
9283240 GAAAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCA-TTACTCGCAATATGAGT
1 GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCT-CTCGCAATATGAGT
* * * *
9283304 TGAATTTTGAAAAGAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTT-TCGCA
65 TGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-CTTCTCGCA
* * * * * *
9283368 ATATGAGTCGATTTTTTTTTTGAAAAACAGAAATTG-AA-AATACCTCAGCATATCTTGAGGCTC
129 ATATGAGTTGA-----ATTTTG-AAAACATAAATTGAAATAATACCTCAGCGTGTCCTGAGGCTC
* * * *
9283431 AACTCATTTCTCGCAATTTGAGTTGACTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTT
188 AACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTC-C
** *
9283496 GAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
252 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * *
9283534 G-AAACATAAATTAAGAAACAAAAATTGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTC
1 GAAAACAGAAATT--G-------AA-----AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* * * * * *
9283598 CCGCATTATGAGTT-AATTTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAAC-CGA
52 TCGCAATATGAGTTGAA----TTTTGAAA-ACAGAAATTGAAAATACCTCA--ACGTG-TCTTGA
* * *
9283661 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTG-AA-AATACCTCAAC
109 GGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTGAAAACATAAATTGAAATAATACCTCAGC
* *
9283724 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
174 GTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTA
*
9283789 CCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
239 CCTCAGCGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
9283841 G-AAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
9283905 GATTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTC
66 GA----ATTTTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTC
*
9283970 GCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAT--TACCTCAGCGTGTCCTGAGGCTCAAC
126 GCAATATGAGTTGAATTTTGAAAACATAAATTGAAATAATACCTCAGCGTGTCCTGAGGCTCAAC
*
9284033 TCATTTCTCGCAATATGAGTTGATTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
191 TCATTTCTCGCAATATGAGTTGA-TTTTTGAA-AACAGAAATTGAAATTACCTCAGCGTGTCC-G
*
9284098 AGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTT
253 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT
* * *
9284137 GACAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
9284202 GAATTTTTTTTGAAAAATATAAATTGAAATGCAGAAATTGAAATTACCTCAACATGCCTTGAGGC
66 GAA----TTTTG----------A---AAA--CAGAAATTGAAAATACCTCAACGTGTCTTGAGGC
* * *
9284267 TCAACTCA-TATCTCG-AAGTATGAGTTGATTTTTTGAAAGAAAAAAATTG-AA-AATACCTCAG
112 TCAACTCACT-TCTCGCAA-TATGAGTTGA-ATTTTGAAA-ACATAAATTGAAATAATACCTCAG
* * * * *
9284328 CATGTCTTGAGGCTCAACTCATTTCTCGCAATATGACTTGATTTTTTTTTACAACAGAAATTGAA
173 CGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---TTTTTGAAAACAGAAATTGAA
9284393 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAA
235 ATTACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTG-A------T------
9284458 TATAAATT
286 T-T---TT
* *
9284466 GAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 GAAAA-CAGAAATTGAAAATACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * *
9284530 TTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
64 TTGAATTTTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGC
* * * *
9284595 -A-ATGAGTTGATTTTTTTGAAAGACAAAAATTG-AA-AATACCTCAGCATGTCTTGAGGCTCAA
128 AATATGAGTTGA--ATTTTGAAA-ACATAAATTGAAATAATACCTCAGCGTGTCCTGAGGCTCAA
*
9284656 CTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAACATAAATTGAACAGAAATTGAAAATACCT
190 CTCATTTCTCGCAATATGAGTTGA--TTTTTG--------AA---AACAGAAATTGAAATTACCT
* * **
9284721 CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA-ATGAGTTGATTTTTTT
242 CAGCGTGTC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT
* ** *
9284771 GAAAAGCAGAAATTGAAAATACTTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
9284836 TGATTTTTTTG-AAACAGAAAT
65 TGA--ATTTTGAAAACAGAAAT
9284857 AAAAACATCA
Statistics
Matches: 1877, Mismatches: 194, Indels: 321
0.78 0.08 0.13
Matches are distributed among these distances:
291 10 0.01
292 110 0.06
293 108 0.06
294 125 0.07
295 23 0.01
296 34 0.02
297 75 0.04
298 2 0.00
300 40 0.02
301 47 0.03
302 2 0.00
305 126 0.07
306 47 0.03
307 303 0.16
308 20 0.01
309 71 0.04
310 70 0.04
311 203 0.11
312 123 0.07
313 97 0.05
314 85 0.05
315 22 0.01
316 1 0.00
318 1 0.00
319 4 0.00
320 8 0.00
321 48 0.03
325 1 0.00
326 6 0.00
329 8 0.00
330 57 0.03
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (289 bp):
GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GAATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAAT
ATGAGTTGAATTTTGAAAACATAAATTGAAATAATACCTCAGCGTGTCCTGAGGCTCAACTCATT
TCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCGAGGCTCAA
CTCACCTCTCGCAATATGAGTTGATTTTT
Found at i:9283552 original size:457 final size:455
Alignment explanation
Indices: 9282335--9284856 Score: 3117
Period size: 457 Copynumber: 5.5 Consensus size: 455
9282325 TGGAAAGCAG
* * * * * * *
9282335 AAATTGAAAATACCTCAGCGTGCCCTGACGCTCAACTCACCTCTCACAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGAATTTTG
* *
9282400 AAAAACAGAAATTGAAATTACCTCAGCGCGTCCTGAGGCTCAACTCGCCTCTCGC-A-ATGAGTT
65 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
9282463 GATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGC
130 GATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGC
9282528 AATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTC
195 AATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTC
* * *
9282593 ATTTCTCGGAATATGAATTGAATTTTGAAACATAAATTAAGAAACAAAAAATGCCAATACCTCAG
259 ATTTCTCGCAATATGAGTTGAATTTTGAAACATAAATTAAGAAACAAAAATTGCCAATACCTCAG
*
9282658 CGTGCCCCGAGGCTCAACTCACCTCTTGCATTATGAGTTGATTTTTTTTTTGAAAGATAGAAATT
324 CGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTTTTGAAAGATAGAAATT
9282723 GAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
387 GAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
9282788 ACAT
452 ACAT
*
9282792 AAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT-CTCGCAATATGAGTTGAATTTTG
* * * *
9282857 -AAAACAGAAATTAAAATTACCTTAGTGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTC
65 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT-
* * * *
9282921 GGTTTTTTTTTGAAAAACAGAAATTGAAAATACATCAGCATGTCTTGAGGCTCAACTCATTTCTT
129 TG-ATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTC
* * *
9282986 GCAATCTGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACT
193 GCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
*
9283050 CATTTCTCACAATATGAGTTGAATTTTGAAACATAAATTAAGAAACAAAAATTGCCAATACCTCA
258 CATTTCTCGCAATATGAGTTGAATTTTGAAACATAAATTAAGAAACAAAAATTGCCAATACCTCA
9283115 GCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTT-ATTTTTTTTTGAAAGATAGAAATT
323 GCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTTTTGAAAGATAGAAATT
9283179 GAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
387 GAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
9283244 ACAT
452 ACAT
*
9283248 AAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATT-CTCGCAATATGAGTTGAATTTTG
* * *
9283313 -AAAAGAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTTTCGCAATATGAGTC
65 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
9283377 GATTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATATCTTGAGGCTCAACTCATTTCT
130 GA---TTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCT
* *
9283442 CGCAATTTGAGTTGA-CTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAAC
192 CGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAAC
9283506 TCATTTCTCGCAATATGAGTTGAATTTTGAAACATAAATTAAGAAACAAAAATTGCCAATACCTC
257 TCATTTCTCGCAATATGAGTTGAATTTTGAAACATAAATTAAGAAACAAAAATTGCCAATACCTC
* *
9283571 AGCGTGCCCCGAGGCTCAACTCACCTCCCGCATTATGAGTTAATTTTTTTTGAAAGATAGAAATT
322 AGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTGAAAGATAGAAATT
9283636 GAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
387 GAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
9283701 ACAT
452 ACAT
9283705 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGAATTTTG
**
9283770 -AAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTT
65 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * ** **
9283834 GA--TTTTTG--AAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
130 GATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGC
* * *
9283895 AATATGAGTTGATTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAA
195 AATATGAGTTGA---TTTTTTG-AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAA
*
9283960 CTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT--G------AAA-T-----TACC
256 CTCATTTCTCGCAATATGAGTTGAATTTTG-AAACATAAATTAAGAAACAAAAATTGCCAATACC
* * ** * *
9284011 TCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTT-AACA-ACAGAA
320 TCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTGAA-AGATAGAA
* * *
9284073 ATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTT
384 ATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT
* *
9284135 TTGACAACAG
446 TTGAAAACAT
* * * * *
9284145 AAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGAA----T
* *
9284210 TTTGAAAAATATAAATTGAAATGCAGAAATTGAAATTACCTCAACATG-CCTTGAGGCTCAACTC
61 TTTG---------AA---AAA--CAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTC
** *
9284274 ATATCTCG-AAGTATGAGTTGA-TTTTTTGAAAGAA-AAAAATTGAAAATACCTCAGCATGTCTT
111 ACCTCTCGCAA-TATGAGTTGATTTTTTTGAAA-AACAGAAATTGAAAATACCTCAGCATGTCTT
* * *
9284336 GAGGCTCAACTCATTTCTCGCAATATGACTTGATTTTTTTTTACAACAGAAATTGAAATTACCTC
174 GAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTTGAAAACAGAAATTGAAATTACCTC
* * ** *
9284401 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATT
237 AACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA---TTTTG--AAACATAAATT
* * * * ** *
9284466 GAA-AAGCAGAAATTG-AAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
297 -AAGAAACAAAAATTGCCAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGA
* * *
9284529 GTTGA---TTTTTGACAA-ACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCA
360 GTTGATTTTTTTTGA-AAGATAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCA
*
9284587 CCTCTCGC-A-ATGAGTTGATTTTTTTGAAAGACAA
423 CCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAT
* * *
9284621 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA--ATTT
* * * **
9284686 TGAAAACATAAATTGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTC
63 TG-------AAA---AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* * ***
9284751 GCAA-ATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATACTTCAATGTGTCTTGAGGCTCAA
118 GCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAA
**
9284815 CTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAACAGAAAT
183 CTCATTTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAAT
9284857 AAAAACATCA
Statistics
Matches: 1850, Mismatches: 139, Indels: 141
0.87 0.07 0.07
Matches are distributed among these distances:
437 2 0.00
438 35 0.02
440 88 0.05
441 8 0.00
442 42 0.02
444 5 0.00
447 1 0.00
448 3 0.00
450 57 0.03
452 6 0.00
454 7 0.00
455 70 0.04
456 273 0.15
457 495 0.27
458 161 0.09
459 51 0.03
460 137 0.07
461 8 0.00
462 54 0.03
463 7 0.00
464 10 0.01
468 9 0.00
469 18 0.01
470 106 0.06
471 3 0.00
472 10 0.01
473 1 0.00
474 5 0.00
475 19 0.01
476 61 0.03
477 53 0.03
478 45 0.02
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (455 bp):
AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTCTCGCAATATGAGTTGAATTTTGA
AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCA
ATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCAT
TTCTCGCAATATGAGTTGAATTTTGAAACATAAATTAAGAAACAAAAATTGCCAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTGAAAGATAGAAATTGAAA
ATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAT
Found at i:9283670 original size:385 final size:368
Alignment explanation
Indices: 9282327--9284856 Score: 2074
Period size: 385 Copynumber: 6.6 Consensus size: 368
9282317 GCAGAAATTG
* * * * * * * ** *
9282327 GAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGACGCTCAACTCACCTCTCACAATATGAGTT
1 GAAAACAGAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
* * * * * ***
9282392 GATTTTT-GA--AA-AACAGAAATTGAAATTACCTCAGCGCGTCCTGAGGCTCAACTCGCCTCTC
66 GATTTTTAAATTAAGAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTC
* *
9282453 GC-A-ATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCA-TGTCTTGAGGCTCA
131 GCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCAGCAGTGTC-CGAGGCTCA
** *
9282515 ACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCT
194 ACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCC
** * * * *
9282580 TGAGGCTCAACTCATTTCTCGGAATATGAATTGAATTTTG-AAACATAAATTAAGAAACAAAAAA
257 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATT--G-------AAA
* ** * *
9282644 TGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCATTATGAGTTGATTTTTTTTTT
313 T-----TACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTT
* * * * **
9282709 GAAAGATAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATG
1 GAAA-ACAGAAATTGAAATTACCTCAACATGT---CTTGAGGCTCAACTCATTTCTCGCAATATG
* * * *
9282773 AGTTGA-TTTT---TGAA-AACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATT
62 AGTTGATTTTTAAATTAAGAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATT
* * * * *
9282833 ACTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATT-AAAATTACCTTAG-TGTGTCCTAAGG
127 TCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAA-TACCTCAGCAGTGTCC-GAGG
** * * *
9282894 CTCAACTCACCTCTCGCAATATGAGTCGGTTTTTTTTTGAAAAACAGAAATTGAAAATACATCAG
190 CTCAACTCACCTCTCGCAATATGA----GTTGATTTTTG-AAAACAGAAATTGAAATTACCTCAA
* * ** * * *
9282959 CATGTCTTGAGGCTCAACTCATTTCTTGCAATCTGAGTTGAATTTTGAAAACAGAAATTGAAATT
250 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATT
** * * ** *
9283024 ACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTGAAACATAAATT
315 ACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-TTT------T---TT
* * * * * * ** ** *
9283089 AAGAAACAAAAATTGCCAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAG
1 GA-AAACAGAAATTG-AAATTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
** * * * *
9283153 TT-ATTTTT-TTTTGAA-AGATAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTC
64 TTGATTTTTAAATT-AAGA-ACAAAAATTGAAAATACCTCAGC--GTG-TCTTGAGGCTCAACTC
** * * *
9283214 ACCTCTCGCAATATGAGTTGA--TTTTTGAAAACATAAATTGAAAATACCTCAAC-GTGTCTTGA
124 ATTTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCAGTGTC-CGA
* * * * *
9283276 GGTTCAACTCA-TTACTCGCAATATGAGTTGAATTTTGAAAAGAGAAATTGAAATTACCTCAGCG
188 GGCTCAACTCACCT-CTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAACG
* *
9283340 TGTCCTGAGGCTCAACTCACCTTTCGCAATATGAGTCGATTTTTTTTTTGAAAAACAGAAATTGA
252 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTG-AAAACAGAAATTGA
* * * * * ** * *
9283405 AAATACCTCAGCATATCTTGAGGCTCAACTCATTTCTCGCAATTTGAGTTGA-CTTTT
311 AATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
9283462 GAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
** * **
9283527 GAATTTTGAAACATAAATTAAGAAACAAAAATTGCCAATACCTCAGCGTGCCCCGAGGCTCAACT
66 G-ATTTT------TAAATTAAG-AACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACT
** * * * * *
9283592 CACCTCCCGCATTATGAGTTAATTTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAA
123 CATTTCTCGCAATATGAGTTGA-TTTTTTTGAAA-ACAGAAATTGAAAATACCTCAGCA-GTG-T
* *
9283657 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAATACCTCA
184 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
* ** *
9283722 ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAT
249 ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAT
*
9283787 TACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
314 TACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * ** **
9283841 G-AAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
** * * *
9283905 GATTTTT-TTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCT
66 GATTTTTAAATT-AAGAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCT
* *
9283969 CGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAGC-GTGTCCTGAGGCTCA
130 CGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCAGTGTCC-GAGGCTCA
** * *
9284031 ACTCATTTCTCGCAATATGAGTTGATTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCC
194 ACTCACCTCTCGCAATATGAGTTGA-TTTTTGAA-AACAGAAATTGAAATTACCTCAACGTGTCC
* *
9284096 TGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTC
257 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAATTACCTC
9284161 AGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTT
320 AGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTG-A--TTTTTT
* *
9284213 GAAAAATATAAATTGAAATGCAGAAATTGAAATTACCTCAACATGCCTTGAGGCTCAACTCATAT
1 G----------A---AAA--CAGAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTT
** *
9284278 CTCG-AAGTATGAGTTGATTTTTTGA--AAGAA-AAAAATTGAAAATACCTCAGCATGTCTTGAG
51 CTCGCAA-TATGAGTTGATTTTTAAATTAAGAACAAAAATTGAAAATACCTCAGCGTGTCTTGAG
* * * *
9284339 GCTCAACTCATTTCTCGCAATATGACTTGATTTTTTTTTACAACAGAAATTGAAATTACCTCAGC
115 GCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTTGAAAACAGAAATTGAAAATACCTCAGC
9284404 -GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGA
179 AGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTG-A------T------T-T---TTGA
9284468 AAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
226 AAA-CAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
9284532 GATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC-A
289 GATTTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAA
9284596 -ATGAGTTGATTTTTTT
353 TATGAGTTGA-TTTTTT
* * *
9284612 GAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 GAAA-ACAGAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
* * *
9284677 TGATTTTTTTGAAAACATAAATTGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAAC
65 TGA--TTTTT---AA-ATTAA--GAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAAC
*
9284742 TCATTTCTCGCAA-ATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATACTTCA--ATGTGTC
122 TCATTTCTCGCAATATGAGTTGATTTTTTTGAAAA-CAGAAATTGAAAATACCTCAGCA-GTGTC
*
9284804 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAACAGAAAT
185 -CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAAT
9284857 AAAAACATCA
Statistics
Matches: 1795, Mismatches: 217, Indels: 276
0.78 0.09 0.12
Matches are distributed among these distances:
363 2 0.00
364 34 0.02
365 7 0.00
366 78 0.04
367 8 0.00
368 68 0.04
369 1 0.00
370 54 0.03
371 9 0.01
372 57 0.03
373 41 0.02
374 6 0.00
376 1 0.00
377 8 0.00
378 106 0.06
379 154 0.09
380 42 0.02
381 28 0.02
382 39 0.02
383 89 0.05
384 145 0.08
385 309 0.17
386 87 0.05
387 21 0.01
388 123 0.07
389 2 0.00
390 3 0.00
391 1 0.00
393 2 0.00
394 13 0.01
395 66 0.04
396 48 0.03
399 8 0.00
400 2 0.00
401 9 0.01
402 8 0.00
403 55 0.03
404 61 0.03
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (368 bp):
GAAAACAGAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
GATTTTTAAATTAAGAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTC
GCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCAGTGTCCGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAG
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
TCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
Found at i:9284314 original size:74 final size:74
Alignment explanation
Indices: 9284236--9284849 Score: 273
Period size: 74 Copynumber: 7.9 Consensus size: 74
9284226 TGAAATGCAG
*
9284236 AAATTGAAATTACCTCAACATGCCTTGAGGCTCAACTCATATCTCG-AAGTATGAGTTGATTTTT
1 AAATTGAAATTACCTCAGCATGCCTTGAGGCTCAACTCATATCTCGCAA-TATGAGTTGATTTTT
9284300 TGAAAGAA-AA
65 TGAAA-AACAA
* * * *
9284310 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGACTTGATTTTTT
1 AAATTGAAATTACCTCAGCATGCCTTGAGGCTCAACTCATATCTCGCAATATGAGTTGA-TTTTT
** * *
9284375 TTTACAACAG
65 TGAAAAACAA
* **
9284385 AAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
1 AAATTGAAATTACCTCAGCATG-CCTTGAGGCTCAACTCATATCTCGCAATATGAGTTG-A-TTT
* *
9284449 TTTGAAAAATAT
63 TTTGAAAAACAA
* * ** * * * * * *
9284461 AAATTGAAA--A--GCAGAAATTGAAATT-A-CCTCAACGTGCCTTGAGGCTCAACTCACCTCTC
1 AAATTGAAATTACCTCAG-CA-TG-CCTTGAGGCTCAAC-T--CAT-A---TC-TCGCA-ATAT-
* * ** *****
9284520 GCAATATGAGTTGATTTTTGACAA
53 G-AGT-TGATTTTTTGAAAAACAA
* **
9284544 ACAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGC-A-ATGAGTTGAT
1 ----AAATTGAAATTACCTCAGCATG-CCTTGAGGCTCAACTCATATCTCGCAATATGAGTTGA-
*
9284606 TTTTTTGAAAGACAA
60 TTTTTTGAAAAACAA
* * *
9284621 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCATGCCTTGAGGCTCAACTCATATCTCGCAATATGAGTTGA-TTTTT
*
9284686 TGAAAACATAAATTGAACAG
65 TG-------AAA---AACAA
* * * * *
9284706 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA-ATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCATGCCTTGAGGCTCAACTCATATCTCGCAATATGAGTTGA-TTTTT
* *
9284770 TGAAAAGCAG
65 TGAAAAACAA
* * *** * **
9284780 AAATTGAAAATACTTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCATGCCTTGAGGCTCAACTCATATCTCGCAATATGAGTTGA-TTTTT
9284845 TGAAA
65 TGAAA
9284850 CAGAAATAAA
Statistics
Matches: 414, Mismatches: 81, Indels: 89
0.71 0.14 0.15
Matches are distributed among these distances:
72 4 0.01
73 46 0.11
74 108 0.26
75 98 0.24
76 26 0.06
77 13 0.03
78 1 0.00
79 1 0.00
80 2 0.00
81 3 0.01
82 7 0.02
83 8 0.02
84 20 0.05
85 52 0.13
87 10 0.02
88 1 0.00
89 5 0.01
90 6 0.01
91 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (74 bp):
AAATTGAAATTACCTCAGCATGCCTTGAGGCTCAACTCATATCTCGCAATATGAGTTGATTTTTT
GAAAAACAA
Found at i:9284343 original size:165 final size:153
Alignment explanation
Indices: 9284233--9284848 Score: 623
Period size: 159 Copynumber: 4.0 Consensus size: 153
9284223 AATTGAAATG
* * **
9284233 CAGAAATTGAAATTACCTCAACATG-CCTTGAGGCTCAACTCATATCTCGAAGTATGAGTTGA-T
1 CAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGAA-TATGAGTTGATT
* * **
9284296 TTTTTGAAAGAAAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATA
64 TTTTTGAAAGACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
* *
9284361 TGACTTGATTTTTTT---TTA-CAA
129 TGAGTTGATTTTTTTGAATTAGAAA
9284382 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG-AATATGAGTTG-ATT
* * * *
9284447 TTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACT
64 TTTTTG--------AAA--G---A-CAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACT
*
9284512 CACCTCTCGCAATATGAGTTGA--TTTTTG----ACAAA
115 CACCTCTCGCAATATGAGTTGATTTTTTTGAATTAGAAA
*
9284545 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA-ATGAGTTGATTTT
1 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGAATATGAGTTGATTTT
* **
9284609 TTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATG
66 TTTGAAAGACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
* *
9284674 AGTTGATTTTTTTGAAAACATAAATTGAA
131 AGTTGATTTTTTTG--AA-TTAGA---AA
* * * **
9284703 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA-ATGAGTTGATTT
1 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG-AATATGAGTTGATTT
* * **
9284767 TTTTGAAA-AGCAGAAATTGAAAATACTTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
65 TTTTGAAAGA-CAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
9284831 TGAGTTGATTTTTTTGAA
129 TGAGTTGATTTTTTTGAA
9284849 ACAGAAATAA
Statistics
Matches: 397, Mismatches: 36, Indels: 60
0.81 0.07 0.12
Matches are distributed among these distances:
146 55 0.14
147 1 0.00
148 6 0.02
149 51 0.13
150 6 0.02
151 7 0.02
152 3 0.01
155 2 0.01
157 2 0.01
158 47 0.12
159 87 0.22
160 9 0.02
161 9 0.02
162 2 0.01
163 56 0.14
164 1 0.00
165 53 0.13
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (153 bp):
CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGAATATGAGTTGATTTT
TTTGAAAGACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTGAATTAGAAA
Found at i:9284557 original size:73 final size:73
Alignment explanation
Indices: 9284464--9284856 Score: 454
Period size: 73 Copynumber: 5.2 Consensus size: 73
9284454 AAAATATAAA
* *
9284464 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
9284529 GTTGA-TTT
65 GTTGATTTT
* * *
9284537 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC-A-ATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
9284600 GTTGATTTTT
65 GTTGA-TTTT
* * * **
9284610 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
9284675 GTTGATTTTT
65 GTTGA-TTTT
**
9284685 TTGAAAACATAAATTGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCT
1 TTG--------AA---AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
9284750 CGCAA-ATGAGTTGATTTTT
55 CGCAATATGAGTTGA-TTTT
* *
9284769 TTGAAAAGCAGAAATTGAAAATACTTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
9284834 GTTGATTTTT
65 GTTGA-TTTT
9284844 TTG-AAACAGAAAT
1 TTGAAAACAGAAAT
9284857 AAAAACATCA
Statistics
Matches: 285, Mismatches: 16, Indels: 38
0.84 0.05 0.11
Matches are distributed among these distances:
71 9 0.03
72 3 0.01
73 112 0.39
74 55 0.19
75 34 0.12
76 2 0.01
83 2 0.01
84 17 0.06
85 50 0.18
86 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (73 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTT
Found at i:9284596 original size:163 final size:160
Alignment explanation
Indices: 9284310--9284630 Score: 482
Period size: 163 Copynumber: 2.0 Consensus size: 160
9284300 TGAAAGAAAA
* * **
9284310 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGACTTGATTTTTT
1 AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCGCAATATGACTTGA--TTTT
*
9284375 TTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
64 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC-A-ATGAG
* *
9284440 TTGAATTTTTTTGAAAAATATAAATTGAAAAGCAG
127 TTG-ATTTTTTTGAAAAACAAAAATTGAAAAGCAG
* * *
9284475 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCGCAATATGACTTGATTTTTT
9284539 GACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATGAGTTG
66 GAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATGAGTTG
*
9284604 ATTTTTTTGAAAGACAAAAATTGAAAA
130 ATTTTTTTGAAAAACAAAAATTGAAAA
9284631 TACCTCAGCA
Statistics
Matches: 144, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
160 24 0.17
161 8 0.06
162 8 0.06
163 52 0.36
165 52 0.36
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (160 bp):
AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCGCAATATGACTTGATTTTTT
GACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATGAGTTGA
TTTTTTTGAAAAACAAAAATTGAAAAGCAG
Found at i:9285695 original size:30 final size:32
Alignment explanation
Indices: 9285641--9285710 Score: 110
Period size: 30 Copynumber: 2.3 Consensus size: 32
9285631 ATCTTTTGTG
*
9285641 TTAATCAAGATGCCCTTTTTGGGTTTTCA-CC
1 TTAATCAAGATGCCCTTTTCGGGTTTTCATCC
9285672 TTAATCAAGATG-CCTTTTCGGGTTTTCATCC
1 TTAATCAAGATGCCCTTTTCGGGTTTTCATCC
9285703 -TAATCAAG
1 TTAATCAAG
9285711 GCGCATAGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
30 23 0.62
31 14 0.38
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (32 bp):
TTAATCAAGATGCCCTTTTCGGGTTTTCATCC
Found at i:9297924 original size:3 final size:3
Alignment explanation
Indices: 9297900--9297951 Score: 61
Period size: 3 Copynumber: 16.7 Consensus size: 3
9297890 AAGTACCTAT
*
9297900 TAA TAA TAT TATA TAA -ATA TAA TAAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A TAA TA-A TAA T-AA TAA TAA TAA TAA TAA TAA TAA
9297947 TAA TA
1 TAA TA
9297952 GTAAAAATAC
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
2 1 0.02
3 36 0.84
4 6 0.14
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:9298119 original size:3 final size:3
Alignment explanation
Indices: 9298111--9298385 Score: 112
Period size: 3 Copynumber: 90.3 Consensus size: 3
9298101 AATATTTATA
* * * *
9298111 AAT AAT AAT AGT AAT -GT AAT AAT AAT AAT ATT AAGT -AT AGT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
* * * *
9298154 AAAT AAT ATGT ACAT AAC AGT AAT AAT AAT AAGT AAC AAT AAT AAT AAT
1 -AAT AAT A-AT A-AT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT
*
9298203 AAT AAT -AT AGA- AATT CAA- AA- AAGT AA- ACAT AAT -AT AAT GAT
1 AAT AAT AAT A-AT AA-T -AAT AAT AA-T AAT A-AT AAT AAT AAT AAT
* * *
9298244 ATT AA- AAT AA- AAT -AT ACACT AAT ATT TAT AAAT AAT AAT AAT AA-
1 AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT -AAT AAT AAT AAT AAT
* *
9298288 ATAT AAT AAT AAT AAT AAT AAT AAT ATT AAGT -AT AGT -AT AAAT AAT
1 A-AT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT -AAT AAT
* * * *
9298334 ATGT ACAT AAC AGT AAT AAT AAT AAGT AAC AAT AAT AAT AAT AAT AAT
1 A-AT A-AT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT
9298382 AAT A
1 AAT A
9298386 TAGAAATTCA
Statistics
Matches: 203, Mismatches: 38, Indels: 62
0.67 0.13 0.20
Matches are distributed among these distances:
2 22 0.11
3 148 0.73
4 29 0.14
5 4 0.02
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:9298317 original size:173 final size:176
Alignment explanation
Indices: 9298108--9298433 Score: 577
Period size: 176 Copynumber: 1.9 Consensus size: 176
9298098 ACTAATATTT
*
9298108 ATAAATAATAATAGTAATGTAATAATAATAATATTAAGTATAGTATAAATAATATGTACATAACA
1 ATAAATAATAATAATAA-GTAATAATAATAATATTAAGTATAGTATAAATAATATGTACATAACA
*
9298173 GTAATAATAATAAGTAAC-AATAATAATAATAATAATATAGAAATTCAAAAAAGTAAACATAATA
65 GTAATAATAATAAGTAACAAATAATAATAATAATAATATAGAAATTCAAAAAAATAAACATAATA
*
9298237 TAATGATATTAAAATAAAATATACACTAATATTTATAAATAATAATA
130 TAATAATATTAAAATAAAATATACACTAATATTTATAAATAATAATA
9298284 ATAAAT-ATAATAATAA-TAATAATAATAATATTAAGTATAGTATAAATAATATGTACATAACAG
1 ATAAATAATAATAATAAGTAATAATAATAATATTAAGTATAGTATAAATAATATGTACATAACAG
9298347 TAATAATAATAAGTAACAATAATAATAATAATAATAATATAGAAATTCAAAAAAATAAACATAAT
66 TAATAATAATAAGTAAC-A-AATAATAATAATAATAATATAGAAATTCAAAAAAATAAACATAAT
9298412 ATAATAATATTAAAATAAAATA
129 ATAATAATATTAAAATAAAATA
9298434 ATTTAAAAAA
Statistics
Matches: 144, Mismatches: 3, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
173 64 0.44
175 9 0.06
176 71 0.49
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (176 bp):
ATAAATAATAATAATAAGTAATAATAATAATATTAAGTATAGTATAAATAATATGTACATAACAG
TAATAATAATAAGTAACAAATAATAATAATAATAATATAGAAATTCAAAAAAATAAACATAATAT
AATAATATTAAAATAAAATATACACTAATATTTATAAATAATAATA
Found at i:9298442 original size:16 final size:16
Alignment explanation
Indices: 9298409--9298441 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9298399 AAATAAACAT
*
9298409 AATATAATAATATTAA
1 AATAAAATAATATTAA
9298425 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
9298440 AA
1 AA
9298442 AATACTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:9304446 original size:6 final size:6
Alignment explanation
Indices: 9304418--9304503 Score: 65
Period size: 6 Copynumber: 14.7 Consensus size: 6
9304408 CTTCTATTTC
* **
9304418 AAAA-A AAAAGA AATAGA AAAA-A AGGA-A AAAAGA AAAAGA AAAA-A
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA
* *
9304462 GAAAA-A AAAGGA AATAGAA AAAAGAA AAAAGA AAAAGA AAAA
1 -AAAAGA AAAAGA AAAAG-A AAAAG-A AAAAGA AAAAGA AAAA
9304504 TGGAGAGACC
Statistics
Matches: 66, Mismatches: 10, Indels: 9
0.78 0.12 0.11
Matches are distributed among these distances:
5 14 0.21
6 40 0.61
7 12 0.18
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (6 bp):
AAAAGA
Found at i:9304446 original size:22 final size:21
Alignment explanation
Indices: 9304421--9304503 Score: 105
Period size: 22 Copynumber: 3.9 Consensus size: 21
9304411 CTATTTCAAA
*
9304421 AAAAAAGAAATAGAAAAAAAGG
1 AAAAAAGAAAAAG-AAAAAAGG
*
9304443 AAAAAAGAAAAAGAAAAAAGAA
1 AAAAAAGAAAAAGAAAAAAG-G
*
9304465 AAAAAAGGAAATAGAAAAAA-G
1 AAAAAA-GAAAAAGAAAAAAGG
9304486 AAAAAAGAAAAAGAAAAA
1 AAAAAAGAAAAAGAAAAA
9304504 TGGAGAGACC
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
20 11 0.20
21 13 0.24
22 18 0.33
23 12 0.22
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (21 bp):
AAAAAAGAAAAAGAAAAAAGG
Found at i:9304452 original size:7 final size:7
Alignment explanation
Indices: 9304421--9304503 Score: 84
Period size: 7 Copynumber: 11.7 Consensus size: 7
9304411 CTATTTCAAA
9304421 AAAAAAG
1 AAAAAAG
9304428 AAATAGAA-
1 AAA-A-AAG
*
9304436 AAAAAGG
1 AAAAAAG
9304443 AAAAAAG
1 AAAAAAG
9304450 -AAAAAG
1 AAAAAAG
9304456 AAAAAAG
1 AAAAAAG
9304463 AAAAAA-
1 AAAAAAG
9304469 AAGGAAATAG
1 AA--AAA-AG
9304479 AAAAAAG
1 AAAAAAG
9304486 AAAAAAG
1 AAAAAAG
9304493 -AAAAAG
1 AAAAAAG
9304499 AAAAA
1 AAAAA
9304504 TGGAGAGACC
Statistics
Matches: 65, Mismatches: 2, Indels: 18
0.76 0.02 0.21
Matches are distributed among these distances:
6 15 0.23
7 35 0.54
8 10 0.15
9 3 0.05
10 2 0.03
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:9304467 original size:43 final size:43
Alignment explanation
Indices: 9304418--9304503 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
9304408 CTTCTATTTC
*
9304418 AAAAAAAAAGAAATAGAAAAAAAGGAAAAAAGAAAAAGAAAAAAG
1 AAAAAAAAGGAAATAG-AAAAAA-GAAAAAAGAAAAAGAAAAAAG
9304463 AAAAAAAAGGAAATAGAAAAAAGAAAAAAGAAAAAGAAAAA
1 AAAAAAAAGGAAATAGAAAAAAGAAAAAAGAAAAAGAAAAA
9304504 TGGAGAGACC
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
43 19 0.47
44 6 0.15
45 15 0.38
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (43 bp):
AAAAAAAAGGAAATAGAAAAAAGAAAAAAGAAAAAGAAAAAAG
Found at i:9304468 original size:30 final size:29
Alignment explanation
Indices: 9304418--9304497 Score: 103
Period size: 30 Copynumber: 2.8 Consensus size: 29
9304408 CTTCTATTTC
*
9304418 AAAA-AAAAAG-AAATAG-AAAAAAAGGAA
1 AAAAGAAAAAGAAAAAAGAAAAAAAAGG-A
9304445 AAAAGAAAAAGAAAAAAGAAAAAAAAGGA
1 AAAAGAAAAAGAAAAAAGAAAAAAAAGGA
*
9304474 AATAGAAAAAAGAAAAAAGAAAAA
1 AAAAG-AAAAAGAAAAAAGAAAAA
9304498 GAAAAATGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
27 4 0.09
28 6 0.13
29 10 0.21
30 27 0.57
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (29 bp):
AAAAGAAAAAGAAAAAAGAAAAAAAAGGA
Found at i:9305672 original size:119 final size:119
Alignment explanation
Indices: 9305535--9306522 Score: 1647
Period size: 119 Copynumber: 8.3 Consensus size: 119
9305525 AACAAGTTGA
* * *
9305535 ACATAGAAGATTTAACTCTCAGATGTTCTCAAATATAGCAGATCTAGCTTTCAGATGTTTATACT
1 ACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCTAACTTTCAGATGTTTATACT
*
9305600 GAAACAGATCCAAGATGATTTAGTATTCTTGTGTTTACAAGGAACAAATCGAGG
66 GAAACAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGG
* *
9305654 ACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGTAGATCTAGCTTTCAGATGTTTATACT
1 ACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCTAACTTTCAGATGTTTATACT
9305719 GAAACAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGG
66 GAAACAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGG
9305773 ACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCTGAAC-TTCAGATGTTTATAC
1 ACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCT-AACTTTCAGATGTTTATAC
* *
9305837 TGAAGCAGATCCAAGATGATTTGGTTTTCTTGTGTTTACAAGGAACAAATCGAGG
65 TGAAACAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGG
* *
9305892 ACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCTAGCTTTTAGATGTTTATACT
1 ACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCTAACTTTCAGATGTTTATACT
* *
9305957 GAAACAGATCCAAGATGTTTTGGTATTCTTGTGTTTACAAGGAACAAATCAAGG
66 GAAACAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGG
* *
9306011 ACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCTAGCTTTTAGATGTTTATACT
1 ACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCTAACTTTCAGATGTTTATACT
9306076 GAAACAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGG
66 GAAACAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGG
9306130 ACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCTAAAC-TTCAGATGTTTATAC
1 ACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCT-AACTTTCAGATGTTTATAC
* *
9306194 TGAAGCAGATCTAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGG
65 TGAAACAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGG
* *
9306249 ACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCATATCTAACCTTCAGATGTTTATACT
1 ACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCTAACTTTCAGATGTTTATACT
*
9306314 GAAACAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATTGAGG
66 GAAACAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGG
* * * *
9306368 ACATAGCAGATTTGACTCTCAGATGTTCTCAGACACATGGCAGATCTAACCTTCAGAAGTTTATA
1 ACATAGCAGATTTGACTCTCAGATGTTCTCA-A-ATATAGCAGATCTAACTTTCAGATGTTTATA
* ** * *
9306433 CTGAAGCCAGATCCAAGATGATTTGACATTCTTGTGTTTACAAGAAACAAATCAAGG
64 CTGAA-ACAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGG
* *
9306490 ACATAGTAGATTTGACTCTCATATGTTCTCAAA
1 ACATAGCAGATTTGACTCTCAGATGTTCTCAAA
9306523 CAGACTCCAG
Statistics
Matches: 826, Mismatches: 36, Indels: 13
0.94 0.04 0.01
Matches are distributed among these distances:
118 5 0.01
119 708 0.86
120 6 0.01
121 33 0.04
122 74 0.09
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (119 bp):
ACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGATCTAACTTTCAGATGTTTATACT
GAAACAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGG
Found at i:9307195 original size:18 final size:18
Alignment explanation
Indices: 9307128--9307271 Score: 202
Period size: 18 Copynumber: 7.9 Consensus size: 18
9307118 ATAATCTTCA
*
9307128 ATGATATGCAATTTTAGAT
1 ATGAT-TGCAATCTTAGAT
9307147 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
9307166 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
9307183 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
9307201 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
* *
9307219 ACGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
9307236 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
9307254 ATGATATACAATCTTAGA
1 ATGAT-TGCAATCTTAGA
9307272 AGATATGATT
Statistics
Matches: 114, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
17 31 0.27
18 50 0.44
19 33 0.29
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.37
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:9307198 original size:35 final size:37
Alignment explanation
Indices: 9307128--9307271 Score: 206
Period size: 35 Copynumber: 4.0 Consensus size: 37
9307118 ATAATCTTCA
* *
9307128 ATGATATGCAATTTTAGATATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATATACAATCTTAGAT
* *
9307166 ATGA-TACAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATATACAATCTTAGAT
*
9307201 ATGATTGCAATCTTAGATACG--ATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATATACAATCTTAGAT
9307236 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
9307272 AGATATGATT
Statistics
Matches: 96, Mismatches: 6, Indels: 9
0.86 0.05 0.08
Matches are distributed among these distances:
35 49 0.51
36 30 0.31
37 13 0.14
38 4 0.04
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.37
Consensus pattern (37 bp):
ATGATTGCAATCTTAGATATGATATACAATCTTAGAT
Found at i:9307215 original size:53 final size:54
Alignment explanation
Indices: 9307128--9307271 Score: 245
Period size: 53 Copynumber: 2.7 Consensus size: 54
9307118 ATAATCTTCA
* *
9307128 ATGATATGCAATTTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGATACGATACAATCTTAGAT
9307183 ATGATTGCAATCTTAGATATGAT-TGCAATCTTAGATACGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGATACGATACAATCTTAGAT
*
9307236 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGA
9307272 AGATATGATT
Statistics
Matches: 85, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
53 52 0.61
54 28 0.33
55 5 0.06
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.37
Consensus pattern (54 bp):
ATGATTGCAATCTTAGATATGATATGCAATCTTAGATACGATACAATCTTAGAT
Found at i:9307817 original size:17 final size:17
Alignment explanation
Indices: 9307752--9307817 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
9307742 TCTAAACCAA
*
9307752 TATATAATATATTTT-T
1 TATATATTATATTTTAT
9307768 TATATAATTATTATTCTTA-
1 TATAT-ATTA-TATT-TTAT
*
9307787 TAAATA-TAT-TTTTAT
1 TATATATTATATTTTAT
9307802 TATATATTATATTTTA
1 TATATATTATATTTTA
9307818 AATTTATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
14 3 0.08
15 7 0.17
16 9 0.22
17 10 0.25
18 5 0.12
19 6 0.15
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (17 bp):
TATATATTATATTTTAT
Found at i:9307841 original size:26 final size:25
Alignment explanation
Indices: 9307794--9307842 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
9307784 TTATAAATAT
* * *
9307794 ATTTTTATTATATATTATATTTTAA
1 ATTTTTATTAAATATCACATTTTAA
9307819 ATTTATTATTAAATATCACATTTT
1 ATTT-TTATTAAATATCACATTTT
9307843 TTATATGCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTTATTAAATATCACATTTTAA
Found at i:9313196 original size:9 final size:9
Alignment explanation
Indices: 9313182--9313214 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
9313172 CCGAATTCAA
9313182 TGAAAGGAT
1 TGAAAGGAT
9313191 TGAAAGGAT
1 TGAAAGGAT
9313200 TGAAAGGAT
1 TGAAAGGAT
*
9313209 GGAAAG
1 TGAAAG
9313215 AATTCAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.36, T:0.18
Consensus pattern (9 bp):
TGAAAGGAT
Found at i:9313223 original size:18 final size:18
Alignment explanation
Indices: 9313184--9313223 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
9313174 GAATTCAATG
* * *
9313184 AAAGGATTGAAAGGATTG
1 AAAGGATGGAAAGAATTC
9313202 AAAGGATGGAAAGAATTC
1 AAAGGATGGAAAGAATTC
9313220 AAAG
1 AAAG
9313224 AGAATTACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.03, G:0.30, T:0.17
Consensus pattern (18 bp):
AAAGGATGGAAAGAATTC
Found at i:9320060 original size:17 final size:16
Alignment explanation
Indices: 9320034--9320072 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
9320024 GAAAAAAATA
9320034 AAAAATTT-AAATTAT
1 AAAAATTTAAAATTAT
9320049 AGAAAATGTTAAAATTAT
1 A-AAAAT-TTAAAATTAT
9320067 AAAAAT
1 AAAAAT
9320073 ATAATTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 1 0.05
16 5 0.24
17 7 0.33
18 8 0.38
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (16 bp):
AAAAATTTAAAATTAT
Found at i:9320188 original size:19 final size:20
Alignment explanation
Indices: 9320152--9320193 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
9320142 ACTTAAACAT
* *
9320152 TTAAAAATAATTATAATAAA
1 TTAAAAATAATAAAAATAAA
*
9320172 TTAAAAATAA-AAAAATAGA
1 TTAAAAATAATAAAAATAAA
9320191 TTA
1 TTA
9320194 TGGTAGTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (20 bp):
TTAAAAATAATAAAAATAAA
Found at i:9320215 original size:25 final size:25
Alignment explanation
Indices: 9320181--9320236 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
9320171 ATTAAAAATA
* *
9320181 AAAAAATAGATTATGGTAGTT-TTTT
1 AAAAAATAGATTA-CGTAGTTATATT
*
9320206 AAAAAGTAGATTACGTAGTTATATT
1 AAAAAATAGATTACGTAGTTATATT
9320231 AAAAAA
1 AAAAAA
9320237 ATGTGATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (25 bp):
AAAAAATAGATTACGTAGTTATATT
Found at i:9321166 original size:89 final size:90
Alignment explanation
Indices: 9321003--9321167 Score: 242
Period size: 89 Copynumber: 1.8 Consensus size: 90
9320993 TTTTCAATTT
* * * *
9321003 TTTTTAAAAAAAGTAATTAAGTCCCTGATTTTTTTTTACACTCATTTAGGTACTTAAACTTTCAA
1 TTTTTAAAAAAAGTAATAAAGGCCCTGACTTTTTTTTACACTCATTTAGGCACTTAAACTTTCAA
*
9321068 AATGCATCAAAGAGGCCGTTAAACA
66 AATACATCAAAGAGGCCGTTAAACA
* * *
9321093 TTTTTAGAAAAAGTAATAAAGGCCCT-ACTTTTTTTTACACTCATTTGGGCACTTGAACTTTCAA
1 TTTTTAAAAAAAGTAATAAAGGCCCTGACTTTTTTTTACACTCATTTAGGCACTTAAACTTTCAA
*
9321157 AATATATCAAA
66 AATACATCAAA
9321168 AAGACCCTCA
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
89 43 0.65
90 23 0.35
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (90 bp):
TTTTTAAAAAAAGTAATAAAGGCCCTGACTTTTTTTTACACTCATTTAGGCACTTAAACTTTCAA
AATACATCAAAGAGGCCGTTAAACA
Found at i:9321193 original size:89 final size:90
Alignment explanation
Indices: 9321003--9321193 Score: 233
Period size: 89 Copynumber: 2.1 Consensus size: 90
9320993 TTTTCAATTT
* * * *
9321003 TTTTTAAAAAAAGTAATTAAGTCCCTGATTTTTTTTTACACTCATTTAGGTACTTAAACTTTCAA
1 TTTTTAAAAAAAGTAATAAAGGCCCTGACTTTTTTTTACACTCATTTAGGCACTTAAACTTTCAA
* * * * *
9321068 AATGCATCAAAGAGGCCGTTAAACA
66 AATACATCAAAAAGACCCTCAAACA
* * *
9321093 TTTTTAGAAAAAGTAATAAAGGCCCT-ACTTTTTTTTACACTCATTTGGGCACTTGAACTTTCAA
1 TTTTTAAAAAAAGTAATAAAGGCCCTGACTTTTTTTTACACTCATTTAGGCACTTAAACTTTCAA
* *
9321157 AATATATCAAAAAGACCCTCAAGC-
66 AATACATCAAAAAGACCCTCAAACA
9321181 TTTTTCAAAAAAA
1 TTTTT-AAAAAAA
9321194 AAAAGCAATT
Statistics
Matches: 85, Mismatches: 15, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
88 5 0.06
89 57 0.67
90 23 0.27
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (90 bp):
TTTTTAAAAAAAGTAATAAAGGCCCTGACTTTTTTTTACACTCATTTAGGCACTTAAACTTTCAA
AATACATCAAAAAGACCCTCAAACA
Found at i:9321366 original size:20 final size:19
Alignment explanation
Indices: 9321343--9321454 Score: 52
Period size: 19 Copynumber: 5.8 Consensus size: 19
9321333 AAAGAATTGT
*
9321343 AAAATTTTATAAAAATGTA
1 AAAAATTTATAAAAATGTA
** *
9321362 AAAAAACTAT-AAAATATA
1 AAAAATTTATAAAAATGTA
* *
9321380 TAGAAATATA-AAAAAT-TA
1 -AAAAATTTATAAAAATGTA
** **
9321398 TAAATTTTTATAAAGTTGTA
1 -AAAAATTTATAAAAATGTA
9321418 AGAAAA-TTATACAAAATGTAA
1 A-AAAATTTATA-AAAATGT-A
*
9321439 AAAAAATTATAAAAAT
1 AAAAATTTATAAAAAT
9321455 CATCGTACCA
Statistics
Matches: 68, Mismatches: 17, Indels: 15
0.68 0.17 0.15
Matches are distributed among these distances:
18 15 0.22
19 28 0.41
20 18 0.26
21 7 0.10
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (19 bp):
AAAAATTTATAAAAATGTA
Found at i:9321392 original size:46 final size:45
Alignment explanation
Indices: 9321290--9321401 Score: 100
Period size: 46 Copynumber: 2.4 Consensus size: 45
9321280 TAAAAAATTC
* * *
9321290 AAATATTAAAAATTAGGAAAAAATTTAAAAATAATAAAAAAATAAAG
1 AAATATAAAAAATTA--TAAAAATGTAAAAATAATAAAAAAATAAAG
* * ** * *
9321337 AATTGTAAAATTTTATAAAAATGTAAAAA-AACTATAAAATATATAG
1 AAATATAAAAAATTATAAAAATGTAAAAATAA-TA-AAAAAATAAAG
9321383 AAATATAAAAAATTATAAA
1 AAATATAAAAAATTATAAA
9321402 TTTTTATAAA
Statistics
Matches: 50, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
44 2 0.04
45 14 0.28
46 24 0.48
47 10 0.20
ACGTcount: A:0.66, C:0.01, G:0.05, T:0.28
Consensus pattern (45 bp):
AAATATAAAAAATTATAAAAATGTAAAAATAATAAAAAAATAAAG
Found at i:9321409 original size:28 final size:27
Alignment explanation
Indices: 9321323--9321411 Score: 79
Period size: 28 Copynumber: 3.2 Consensus size: 27
9321313 TTTAAAAATA
* * *
9321323 ATAAAAAAATAAAGAATTGTAAAATTTT
1 ATAAAAATATAAAAAATTAT-AAATTTT
* * * *
9321351 ATAAAAATGTAAAAAAACTATAAAATAT
1 ATAAAAATAT-AAAAAATTATAAATTTT
*
9321379 ATAGAAATATAAAAAATTATAAATTTTT
1 ATAAAAATATAAAAAATTATAAA-TTTT
9321407 ATAAA
1 ATAAA
9321412 GTTGTAAGAA
Statistics
Matches: 46, Mismatches: 13, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
27 12 0.26
28 27 0.59
29 7 0.15
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.31
Consensus pattern (27 bp):
ATAAAAATATAAAAAATTATAAATTTT
Found at i:9321452 original size:10 final size:10
Alignment explanation
Indices: 9321297--9321453 Score: 57
Period size: 10 Copynumber: 16.4 Consensus size: 10
9321287 TTCAAATATT
*
9321297 AAAAATTAGGA
1 AAAAATTA-TA
9321308 AAAAATT-T-
1 AAAAATTATA
*
9321316 AAAAATAATA
1 AAAAATTATA
9321326 AAAAA--ATA
1 AAAAATTATA
* *
9321334 AAGAATTGTA
1 AAAAATTATA
**
9321344 AAATTTTAT-
1 AAAAATTATA
9321353 AAAAATGTA-A
1 AAAAAT-TATA
*
9321363 AAAAACTATA
1 AAAAATTATA
*
9321373 AAATA-TAT-
1 AAAAATTATA
*
9321381 AGAAA-TATA
1 AAAAATTATA
9321390 AAAAATTAT-
1 AAAAATTATA
* *
9321399 -AAATTTTTA
1 AAAAATTATA
* * *
9321408 TAAAGTTGTA
1 AAAAATTATA
9321418 AGAAAATTATA
1 A-AAAATTATA
* *
9321429 CAAAATGTAAA
1 AAAAAT-TATA
9321440 AAAAATTATA
1 AAAAATTATA
9321450 AAAA
1 AAAA
9321454 TCATCGTACC
Statistics
Matches: 107, Mismatches: 26, Indels: 27
0.67 0.16 0.17
Matches are distributed among these distances:
8 25 0.23
9 14 0.13
10 46 0.43
11 22 0.21
ACGTcount: A:0.64, C:0.01, G:0.06, T:0.29
Consensus pattern (10 bp):
AAAAATTATA
Found at i:9321611 original size:19 final size:19
Alignment explanation
Indices: 9321587--9321635 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
9321577 TTTTATGATT
9321587 TTTTTATAAAATTTTACAA
1 TTTTTATAAAATTTTACAA
* **
9321606 TTTTTA-AAATTTTTTATGA
1 TTTTTATAAA-ATTTTACAA
9321625 TTTTTATAAAA
1 TTTTTATAAAA
9321636 AAATTCTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
18 3 0.12
19 18 0.75
20 3 0.12
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
TTTTTATAAAATTTTACAA
Found at i:9328930 original size:14 final size:15
Alignment explanation
Indices: 9328891--9328944 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 15
9328881 CCCAAGCACT
*
9328891 AGAAG-AGAGAAAGA
1 AGAAGAAGAAAAAGA
* *
9328905 A-AAG-AGAGAAAGG
1 AGAAGAAGAAAAAGA
9328918 AGAAGAA-AAAAAGA
1 AGAAGAAGAAAAAGA
9328932 AGAAGAAGAAAAA
1 AGAAGAAGAAAAA
9328945 ATAAAAAGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
13 12 0.35
14 16 0.47
15 6 0.18
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (15 bp):
AGAAGAAGAAAAAGA
Found at i:9328930 original size:27 final size:27
Alignment explanation
Indices: 9328891--9328942 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
9328881 CCCAAGCACT
* *
9328891 AGAAGAGAGAAAGAA-AAGAGAGAAAGG
1 AGAAGAAAAAAAGAAGAAGA-AGAAAGG
9328918 AGAAGAAAAAAAGAAGAAGAAGAAA
1 AGAAGAAAAAAAGAAGAAGAAGAAA
9328943 AAATAAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (27 bp):
AGAAGAAAAAAAGAAGAAGAAGAAAGG
Found at i:9329190 original size:60 final size:60
Alignment explanation
Indices: 9329107--9329232 Score: 209
Period size: 60 Copynumber: 2.1 Consensus size: 60
9329097 TTATTTTGTT
* *
9329107 TGTTTATAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATT-ATGTTATAAATTTTTG
1 TGTTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAT-TTATAAATTATTG
*
9329167 TGTTTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAATTTATAAATTATTG
1 TGTTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAATTTATAAATTATTG
9329227 TGTTTA
1 TGTTTA
9329233 GTTTAGTATT
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
60 59 0.97
61 2 0.03
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (60 bp):
TGTTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAATTTATAAATTATTG
Found at i:9330037 original size:3 final size:3
Alignment explanation
Indices: 9330029--9330062 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
9330019 GTTCTTTGAT
9330029 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
9330063 CACATATCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:9331811 original size:33 final size:33
Alignment explanation
Indices: 9331774--9331856 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 33
9331764 ACTTCGCTCT
9331774 TTCCGGCCAGTATCTACCACCGTACTCCACTCC
1 TTCCGGCCAGTATCTACCACCGTACTCCACTCC
* * * ***
9331807 TTCCGGTCTGTATCCACTGTCGTACTCCACTCC
1 TTCCGGCCAGTATCTACCACCGTACTCCACTCC
*
9331840 TCCCGGCCCA-TATCTAC
1 TTCCGG-CCAGTATCTAC
9331857 TGTCGTAATG
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
33 38 0.97
34 1 0.03
ACGTcount: A:0.16, C:0.43, G:0.13, T:0.28
Consensus pattern (33 bp):
TTCCGGCCAGTATCTACCACCGTACTCCACTCC
Found at i:9331859 original size:33 final size:33
Alignment explanation
Indices: 9331794--9331863 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
9331784 TATCTACCAC
* * **
9331794 CGTACTCCACTCCTTCCGGTCTGTATCCACTGT
1 CGTACTCCACTCCTCCCGGCCCATATCCACTGT
*
9331827 CGTACTCCACTCCTCCCGGCCCATATCTACTGT
1 CGTACTCCACTCCTCCCGGCCCATATCCACTGT
9331860 CGTA
1 CGTA
9331864 ATGACTTTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.14, C:0.41, G:0.14, T:0.30
Consensus pattern (33 bp):
CGTACTCCACTCCTCCCGGCCCATATCCACTGT
Found at i:9331910 original size:19 final size:19
Alignment explanation
Indices: 9331861--9331910 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
9331851 ATCTACTGTC
*
9331861 GTAATGACTTTGTATTTAT
1 GTAATAACTTTGTATTTAT
* *
9331880 ATAGTCAACTTTGTATTTAT
1 GTAAT-AACTTTGTATTTAT
9331900 GTAATAACTTT
1 GTAATAACTTT
9331911 TTTGCCATTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.30, C:0.08, G:0.12, T:0.50
Consensus pattern (19 bp):
GTAATAACTTTGTATTTAT
Found at i:9335027 original size:19 final size:20
Alignment explanation
Indices: 9334991--9335031 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
9334981 ATGTATACAT
9334991 TATGTAAATATCATATTATG
1 TATGTAAATATCATATTATG
*
9335011 TATGTATATAT-ATATTATG
1 TATGTAAATATCATATTATG
9335030 TA
1 TA
9335032 CATTTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.39, C:0.02, G:0.10, T:0.49
Consensus pattern (20 bp):
TATGTAAATATCATATTATG
Found at i:9335251 original size:24 final size:22
Alignment explanation
Indices: 9335216--9335259 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 22
9335206 TCTAGTATAG
9335216 ATATATATTGTA-TATATTTTAC
1 ATATATATTGTACT-TATTTTAC
9335238 ATATATATTATGTACTTATTTT
1 ATATATA-T-TGTACTTATTTT
9335260 TAATGTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 7 0.37
23 1 0.05
24 10 0.53
25 1 0.05
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.57
Consensus pattern (22 bp):
ATATATATTGTACTTATTTTAC
Found at i:9339126 original size:4 final size:4
Alignment explanation
Indices: 9339119--9339150 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
9339109 GACATTTATG
*
9339119 CATT CATT CATT CATT CATT CATT CAGT CATT
1 CATT CATT CATT CATT CATT CATT CATT CATT
9339151 GCATATCCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.03, T:0.47
Consensus pattern (4 bp):
CATT
Found at i:9342981 original size:24 final size:24
Alignment explanation
Indices: 9342931--9342984 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
9342921 AATCGAATTT
*
9342931 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
9342955 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
9342979 GCACAC
1 GCACAC
9342985 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:9350569 original size:14 final size:15
Alignment explanation
Indices: 9350536--9350567 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
9350526 TGCTGAGGTA
9350536 TTTTC-AATTTCTGT
1 TTTTCAAATTTCTGT
9350550 TTTTCAAATTTCTGT
1 TTTTCAAATTTCTGT
9350565 TTT
1 TTT
9350568 CAGAAAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.16, C:0.12, G:0.06, T:0.66
Consensus pattern (15 bp):
TTTTCAAATTTCTGT
Found at i:9350580 original size:89 final size:89
Alignment explanation
Indices: 9350480--9350820 Score: 433
Period size: 87 Copynumber: 3.9 Consensus size: 89
9350470 TCTGTCTTTC
* * *
9350480 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCCCATGTGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACA--CGCTGAGGTATTTTCAAT
*
9350544 TTCTGTTTTTCAAATTTCTGTTTTC-A
63 TTCTGTTTTTCAAATTTATGTTTTCAA
* * * * * *
9350570 GAAAA-CAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACATGTTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
9350634 TGCTTTTC-AATTTATGTGTTTCAA
66 TGTTTTTCAAATTTATGT-TTTCAA
* * * * *
9350658 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGGCACGCTGAGGTATGTTCAGTTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
9350723 TGTTTTT-TAATTTATG-TTTCAA
66 TGTTTTTCAAATTTATGTTTTCAA
* *
9350745 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
9350810 TGTTTTTCAAA
66 TGTTTTTCAAA
9350821 AAAATCAACT
Statistics
Matches: 219, Mismatches: 26, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
86 8 0.04
87 103 0.47
88 7 0.03
89 97 0.44
90 4 0.02
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.37
Consensus pattern (89 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTCAAATTTATGTTTTCAA
Found at i:9350657 original size:14 final size:14
Alignment explanation
Indices: 9350623--9350649 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9350613 TGTTGAGGTA
9350623 TTTTCAATTTATGC
1 TTTTCAATTTATGC
9350637 TTTTCAATTTATG
1 TTTTCAATTTATG
9350650 TGTTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.11, G:0.07, T:0.59
Consensus pattern (14 bp):
TTTTCAATTTATGC
Found at i:9350777 original size:87 final size:87
Alignment explanation
Indices: 9350480--9350983 Score: 606
Period size: 89 Copynumber: 5.9 Consensus size: 87
9350470 TCTGTCTTTC
* * *
9350480 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCCCATGTGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACA--CGCTGAGGTATTTTCAAT
*
9350544 TTCTGTTTTTCAAATTTCTGTTTTC-A
63 TTCTGTTTTTC-AATTTATG-TTTCAA
* * * * * *
9350570 GAAAA-CAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACATGTTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
9350634 TGCTTTTCAATTTATGTGTTTCAA
66 TGTTTTTCAATTTA--TGTTTCAA
* * * * *
9350658 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGGCACGCTGAGGTATGTTCAGTTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
9350723 TGTTTTTTAATTTATGTTTCAA
66 TGTTTTTCAATTTATGTTTCAA
*
9350745 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTATTTTCAA----
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
9350806 ---TTTT---TGT-T-TTTCAA
66 TGTTTTTCAATTTATGTTTCAA
* * *
9350820 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAAGTATTTTCAAATTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
9350885 TATTTTTCAATTTATGTTTTTCAA
66 TGTTTTTCAATTTATG--TTTCAA
9350909 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
9350974 TGTTTGTCAA
66 TGTTTTTCAA
9350984 AAAATCAACT
Statistics
Matches: 359, Mismatches: 36, Indels: 39
0.83 0.08 0.09
Matches are distributed among these distances:
75 64 0.18
76 1 0.00
77 2 0.01
80 4 0.01
82 4 0.01
85 2 0.01
86 6 0.02
87 94 0.26
88 7 0.02
89 171 0.48
90 4 0.01
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTCAATTTATGTTTCAA
Found at i:9350852 original size:75 final size:75
Alignment explanation
Indices: 9350731--9350894 Score: 258
Period size: 75 Copynumber: 2.2 Consensus size: 75
9350721 TTTGTTTTTT
* *
9350731 AATT-TATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGA
1 AATTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGA
*
9350795 GGTATTTTCA
66 AGTATTTTCA
* * * *
9350805 ATTTTTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
1 AATTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGA
9350870 AGTATTTTCA
66 AGTATTTTCA
9350880 AATTCTATTTTTCAA
1 AATTCTATTTTTCAA
9350895 TTTATGTTTT
Statistics
Matches: 80, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
74 3 0.04
75 77 0.96
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34
Consensus pattern (75 bp):
AATTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGA
AGTATTTTCA
Found at i:9351008 original size:74 final size:75
Alignment explanation
Indices: 9350888--9351144 Score: 291
Period size: 74 Copynumber: 3.3 Consensus size: 75
9350878 CAAATTCTAT
* *
9350888 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACA
9350953 CGCTGAGGTA
66 CGCTGAGGTA
* *
9350963 TTTTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGGCA
1 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACA
9351027 CGCTGAGGTA
66 CGCTGAGGTA
* * * *
9351037 TGTTCAGTTTTTGTTTTTTAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAATTTATG---------TT-TG--TCAAAAAAATCAACTCATATTGAGAGAGGTGAGTTG
*
9351102 AGCCTCAGGACACACTGAGGTA
54 AGCCTCAGGACACGCTGAGGTA
* * *
9351124 TTTTCAAATTCTGTTTTTCAA
1 TTTTCAATTTATGTTTGTCAA
9351145 TTTATGTTTT
Statistics
Matches: 154, Mismatches: 15, Indels: 26
0.79 0.08 0.13
Matches are distributed among these distances:
74 63 0.41
75 21 0.14
77 1 0.01
78 2 0.01
83 2 0.01
84 2 0.01
86 2 0.01
87 61 0.40
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (75 bp):
TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTA
Found at i:9351143 original size:14 final size:14
Alignment explanation
Indices: 9351124--9351159 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
9351114 CACTGAGGTA
*
9351124 TTTTCAAATTCTGT
1 TTTTCAAATTATGT
*
9351138 TTTTCAATTTATGT
1 TTTTCAAATTATGT
9351152 TTTTCAAA
1 TTTTCAAA
9351160 AAAATCAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.25, C:0.11, G:0.06, T:0.58
Consensus pattern (14 bp):
TTTTCAAATTATGT
Found at i:9351146 original size:250 final size:250
Alignment explanation
Indices: 9350814--9351356 Score: 897
Period size: 250 Copynumber: 2.2 Consensus size: 250
9350804 AATTTTTGTT
*
9350814 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAAGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAAGTATTTTC
9350879 AAATTCTATTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
66 AAATTCTATTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
9350944 CTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGAGAGAGGT
131 CTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGAGAGAGGT
** * ** **
9351009 GAGTTGAGCCTCAGGGCACGCTGAGGTATGTTCAGTTTTTGTTTTTTAATTTATG
196 GAGTTGAGCCTCAAAGCACGCTGAGGTATGTTCAATTTGAGCCTTTTAATTTATG
* *
9351064 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAAGTATTTTC
*
9351129 AAATTCTGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
66 AAATTCTATTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* *
9351194 TTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGT
131 CTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGAGAGAGGT
* * *
9351259 GAGTTGAGCCTCAAAGCACGCTGATGTATTTTCAATTTGAGCCTTTTAATTTCTG
196 GAGTTGAGCCTCAAAGCACGCTGAGGTATGTTCAATTTGAGCCTTTTAATTTATG
*** * *
9351314 TTTTTCAAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
9351357 TTTAATTTCT
Statistics
Matches: 272, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
250 272 1.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.35
Consensus pattern (250 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAAGTATTTTC
AAATTCTATTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGAGAGAGGT
GAGTTGAGCCTCAAAGCACGCTGAGGTATGTTCAATTTGAGCCTTTTAATTTATG
Found at i:9351180 original size:89 final size:89
Alignment explanation
Indices: 9350963--9351233 Score: 413
Period size: 89 Copynumber: 3.1 Consensus size: 89
9350953 CGCTGAGGTA
* * * *
9350963 TTTTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAGGGCA
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * *
9351027 CGCTGAGGTATGTTCAGTTTTTGT
66 CGCTGAGGTATTTTCAATTTCTGT
*
9351051 TTTTTAATTTATG--TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
9351114 CACTGAGGTATTTTCAAATTCTGT
66 CGCTGAGGTATTTTCAATTTCTGT
*
9351138 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGGACA
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
9351203 CGCTGAGGTATTTTCAATTTCTGT
66 CGCTGAGGTATTTTCAATTTCTGT
*
9351227 TTGTCAA
1 TTTTCAA
9351234 AAAATCAACT
Statistics
Matches: 165, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
86 3 0.02
87 74 0.45
88 11 0.07
89 77 0.47
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (89 bp):
TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTATTTTCAATTTCTGT
Found at i:9351260 original size:74 final size:75
Alignment explanation
Indices: 9351138--9351296 Score: 250
Period size: 74 Copynumber: 2.1 Consensus size: 75
9351128 CAAATTCTGT
* * *
9351138 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTC-AGGAC
1 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAG-C
9351202 ACGCTGAGGTA
65 ACGCTGAGGTA
*
9351213 TTTTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCA
1 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCA
*
9351277 CGCTGATGTA
66 CGCTGAGGTA
9351287 TTTTCAATTT
1 TTTTCAATTT
9351297 GAGCCTTTTA
Statistics
Matches: 78, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
74 59 0.76
75 19 0.24
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (75 bp):
TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAGCA
CGCTGAGGTA
Found at i:9351359 original size:54 final size:54
Alignment explanation
Indices: 9351295--9351681 Score: 648
Period size: 54 Copynumber: 7.1 Consensus size: 54
9351285 TATTTTCAAT
*
9351295 TTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGTGAGAAGTGAG
1 TTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAG
* *
9351349 TTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAG
1 TTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAG
*
9351403 TTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGTGAGAAGTGAG
1 TTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAG
* *
9351457 TTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAG
1 TTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAG
*
9351511 TTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAG
1 TTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAG
* *
9351565 TTGAGCCTTTTAATTTTTGTTTTTCAAAAAAAATCAACTCATATTGCGGGAAGTGAG
1 TTGAGCCTTTTAATTTCTGTTTTTC---AAAAATCAACTCATATTGCGAGAAGTGAG
* *
9351622 TTGAGCCTTTTAATTTCTGTTTTTCAAAAGTCAACTCATATTGCGAGAAATGAG
1 TTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAG
9351676 TTGAGC
1 TTGAGC
9351682 TCAGGATCAC
Statistics
Matches: 313, Mismatches: 17, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
54 262 0.84
57 51 0.16
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.39
Consensus pattern (54 bp):
TTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAG
Found at i:9352599 original size:13 final size:13
Alignment explanation
Indices: 9352581--9352605 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9352571 ATTATCTTTA
9352581 GTTTATTTTTTTT
1 GTTTATTTTTTTT
9352594 GTTTATTTTTTT
1 GTTTATTTTTTT
9352606 ATAAATACGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.84
Consensus pattern (13 bp):
GTTTATTTTTTTT
Found at i:9353992 original size:23 final size:24
Alignment explanation
Indices: 9353965--9354021 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 24
9353955 TGTTTTATAC
9353965 ATATTATGCATGTACAT-TTTTTA
1 ATATTATGCATGTACATATTTTTA
*** *
9353988 ATATTACATATGTATATATTTTTA
1 ATATTATGCATGTACATATTTTTA
9354012 ATATGTATGC
1 ATAT-TATGC
9354022 GTATATATTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
23 13 0.52
24 10 0.40
25 2 0.08
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.51
Consensus pattern (24 bp):
ATATTATGCATGTACATATTTTTA
Found at i:9354096 original size:16 final size:15
Alignment explanation
Indices: 9354070--9354108 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
9354060 TTCTAGTATG
*
9354070 TATACATTATGTAAA
1 TATATATTATGTAAA
*
9354085 TATCATATTATGTATA
1 TAT-ATATTATGTAAA
9354101 TATATATT
1 TATATATT
9354109 TATATATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (15 bp):
TATATATTATGTAAA
Found at i:9354111 original size:16 final size:16
Alignment explanation
Indices: 9354075--9354117 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
9354065 GTATGTATAC
*
9354075 ATTATGTAAATATCAT
1 ATTATGTATATATCAT
9354091 ATTATGTATATAT-AT
1 ATTATGTATATATCAT
*
9354106 ATT-TATATATAT
1 ATTATGTATATAT
9354118 TATGTACATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 8 0.32
15 5 0.20
16 12 0.48
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (16 bp):
ATTATGTATATATCAT
Found at i:9354344 original size:24 final size:22
Alignment explanation
Indices: 9354309--9354352 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 22
9354299 TCTAATATAG
9354309 ATATATATTGTA-TATATTTTAC
1 ATATATATTGTACT-TATTTTAC
9354331 ATATATATTATGTACTTATTTT
1 ATATATA-T-TGTACTTATTTT
9354353 TAATGTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 7 0.37
23 1 0.05
24 10 0.53
25 1 0.05
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.57
Consensus pattern (22 bp):
ATATATATTGTACTTATTTTAC
Found at i:9360673 original size:27 final size:27
Alignment explanation
Indices: 9360635--9360711 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
9360625 TGTGGGCCTT
* *
9360635 ACCAGTCGCGCCTCTGAGATAGGCTCA
1 ACCAGTCGCGCCTCTCAGATAGGCCCA
* *
9360662 ACCAGTTGCGCCTGTCAGATAGGCCCA
1 ACCAGTCGCGCCTCTCAGATAGGCCCA
* *
9360689 ACCAGTCGCGCCTGTCATATAGG
1 ACCAGTCGCGCCTCTCAGATAGG
9360712 TGCAACCCGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.22, C:0.32, G:0.26, T:0.19
Consensus pattern (27 bp):
ACCAGTCGCGCCTCTCAGATAGGCCCA
Found at i:9360817 original size:22 final size:23
Alignment explanation
Indices: 9360764--9360817 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 23
9360754 ACTGATCCGG
*
9360764 AAAAAAAATTAATAATATTTTATT
1 AAAAAAAA-TAATAATATTTAATT
9360788 AAACAAAAA-AAT-ATATTTAATAT
1 AAA-AAAAATAATAATATTTAAT-T
9360811 AAAAAAA
1 AAAAAAA
9360818 GGAGTTGCGC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 12 0.44
23 7 0.26
24 3 0.11
25 5 0.19
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAAAAAATAATAATATTTAATT
Found at i:9362027 original size:26 final size:26
Alignment explanation
Indices: 9361990--9362073 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
9361980 TGATACAAAT
* *
9361990 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9362016 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9362042 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
9362068 TGATAA
1 TGATAA
9362074 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:9375058 original size:29 final size:30
Alignment explanation
Indices: 9374999--9375056 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
9374989 TCCGAGCCTT
*
9374999 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
9375029 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
9375057 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:9375286 original size:13 final size:13
Alignment explanation
Indices: 9375268--9375299 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
9375258 TTTCCAGCAA
9375268 TTATGAATTTATT
1 TTATGAATTTATT
9375281 TTATGAATTTATT
1 TTATGAATTTATT
*
9375294 TGATGA
1 TTATGA
9375300 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:9375472 original size:50 final size:50
Alignment explanation
Indices: 9375397--9375584 Score: 279
Period size: 50 Copynumber: 3.8 Consensus size: 50
9375387 TGGGTAAAGA
9375397 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAG
*
9375447 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAG
* * * * * *
9375497 GTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ACACGAGAAC
1 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG-AG
* *
9375547 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
9375585 TGTTATTATC
Statistics
Matches: 124, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
49 5 0.04
50 119 0.96
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (50 bp):
GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAG
Found at i:9382548 original size:29 final size:30
Alignment explanation
Indices: 9382489--9382546 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
9382479 TCCGAGCCTT
*
9382489 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
9382519 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
9382547 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:9382775 original size:13 final size:13
Alignment explanation
Indices: 9382757--9382788 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
9382747 TTTCCAGCAA
9382757 TTATGAATTTATT
1 TTATGAATTTATT
9382770 TTATGAATTTATT
1 TTATGAATTTATT
*
9382783 TGATGA
1 TTATGA
9382789 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:9382961 original size:50 final size:50
Alignment explanation
Indices: 9382886--9383074 Score: 288
Period size: 50 Copynumber: 3.8 Consensus size: 50
9382876 TGGGTAAAGA
9382886 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAG
*
9382936 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAG
* * * * * *
9382986 GTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCAACATGAGAAC
1 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG-AG
* *
9383037 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
9383075 TGTTATTATC
Statistics
Matches: 125, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 91 0.73
51 34 0.27
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.21
Consensus pattern (50 bp):
GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAG
Found at i:9385827 original size:46 final size:46
Alignment explanation
Indices: 9385762--9385943 Score: 240
Period size: 46 Copynumber: 4.0 Consensus size: 46
9385752 TTATCTTTGA
* * * * *
9385762 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGT
* **
9385808 CATGTTGCCATTGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
* * *
9385854 CACGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
*
9385900 CATGTTGCCACGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
9385944 TTCAGAGAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
45 4 0.03
46 117 0.97
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
Found at i:9389887 original size:18 final size:17
Alignment explanation
Indices: 9389852--9389884 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
9389842 CTTTTTATTC
9389852 TTTTATTATTTCATTTA
1 TTTTATTATTTCATTTA
9389869 TTTTACTTATTT-ATTT
1 TTTTA-TTATTTCATTT
9389885 TATCATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATTATTTCATTTA
Found at i:9401508 original size:43 final size:43
Alignment explanation
Indices: 9401353--9401509 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
9401343 TGTGTTTTCG
* * **
9401353 TGTAAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTATG
1 TGTAAGACCACGTCTGAGACGTTGGCATCGA-TATTTGA-TTACA
* * * * * *
9401397 TGTAAGACCATGTCAGGGACATCGGCATCG-TATTTGATTTCA
1 TGTAAGACCACGTCTGAGACGTTGGCATCGATATTTGATTACA
* *
9401439 TGTAAGACC-CTGTATGAGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGAGA-CGTTGGCATCGATATTTGATTACA
9401482 TGTAAGACCACGTCTGAGACGTTGGCAT
1 TGTAAGACCACGTCTGAGACGTTGGCAT
9401510 TGTACGAGTT
Statistics
Matches: 89, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
42 25 0.28
43 37 0.42
44 27 0.30
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGAGACGTTGGCATCGATATTTGATTACA
Found at i:9404884 original size:42 final size:42
Alignment explanation
Indices: 9404821--9404929 Score: 173
Period size: 42 Copynumber: 2.6 Consensus size: 42
9404811 CTTTATATGG
* *
9404821 ACTTCATATAGACTTACTAAGCATATGGGTAATTGCTAATTA
1 ACTTCATATGGACTTACTAAGCATATGGGTAATTACTAATTA
* * *
9404863 ACTTCATATGGACTTAATAAGCATGTGGGTAATTACTTATTA
1 ACTTCATATGGACTTACTAAGCATATGGGTAATTACTAATTA
9404905 ACTTCATATGGACTTACTAAGCATA
1 ACTTCATATGGACTTACTAAGCATA
9404930 AAGCTTACCC
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Consensus pattern (42 bp):
ACTTCATATGGACTTACTAAGCATATGGGTAATTACTAATTA
Found at i:9407789 original size:22 final size:23
Alignment explanation
Indices: 9407750--9407793 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
9407740 ATAAGTATTT
9407750 CTTATTCACATTTTTAAATAAAG
1 CTTATTCACATTTTTAAATAAAG
9407773 CTTATTCACA-TTTTAAATAAA
1 CTTATTCACATTTTTAAATAAA
9407794 AAATTTGTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (23 bp):
CTTATTCACATTTTTAAATAAAG
Found at i:9408054 original size:45 final size:44
Alignment explanation
Indices: 9407979--9408078 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 44
9407969 ATATCAGAAT
*
9407979 TTAAAGATTCAAACATTTATGGATGAATTTAATGGAGGGAAGAC
1 TTAAAGATTCAAACATTCATGGATGAATTTAATGGAGGGAAGAC
* * **
9408023 TTAAGGATTCAAGCATTCATTGGAT-AGATTTAATGGAGGGAATTC
1 TTAAAGATTCAAACATTCA-TGGATGA-ATTTAATGGAGGGAAGAC
*
9408068 TAAAAGATTCA
1 TTAAAGATTCA
9408079 CATCCATCAT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
44 17 0.36
45 30 0.64
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (44 bp):
TTAAAGATTCAAACATTCATGGATGAATTTAATGGAGGGAAGAC
Found at i:9417878 original size:17 final size:18
Alignment explanation
Indices: 9417856--9417897 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
9417846 AGAGCTCGCA
*
9417856 GGTGAGCTTTCAAGT-TT
1 GGTGAGCTTTAAAGTCTT
*
9417873 GGTGAG-GTTAAAGTCTT
1 GGTGAGCTTTAAAGTCTT
9417890 GGTGAGCT
1 GGTGAGCT
9417898 CGCATATTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.19, C:0.10, G:0.36, T:0.36
Consensus pattern (18 bp):
GGTGAGCTTTAAAGTCTT
Found at i:9420356 original size:42 final size:43
Alignment explanation
Indices: 9420297--9420380 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 43
9420287 TTTTTGTTGC
*
9420297 CATTTGTTTTTGCATACTTTCTCTA-ATGGCCAAACTACTTGA
1 CATTTATTTTTGCATACTTTCTCTACATGGCCAAACTACTTGA
* *
9420339 CATTTATTTTTGCATACTTTCTCTACATGGCTAAACTGCTTG
1 CATTTATTTTTGCATACTTTCTCTACATGGCCAAACTACTTG
9420381 CAATTTTTGC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
42 24 0.63
43 14 0.37
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (43 bp):
CATTTATTTTTGCATACTTTCTCTACATGGCCAAACTACTTGA
Found at i:9420713 original size:75 final size:75
Alignment explanation
Indices: 9420588--9420743 Score: 303
Period size: 75 Copynumber: 2.1 Consensus size: 75
9420578 AACATGTTTT
*
9420588 TCTTCTCTATTTGCCCTTCTTTGTTCTAGAGTATTGATTAGCTATGAGAGTGAAATGGTTGATAG
1 TCTTCTCTATTTGCCCTTCTTTGTTCTAGAGTATTGATTAGCTATAAGAGTGAAATGGTTGATAG
9420653 ATCCCTTAAG
66 ATCCCTTAAG
9420663 TCTTCTCTATTTGCCCTTCTTTGTTCTAGAGTATTGATTAGCTATAAGAGTGAAATGGTTGATAG
1 TCTTCTCTATTTGCCCTTCTTTGTTCTAGAGTATTGATTAGCTATAAGAGTGAAATGGTTGATAG
9420728 ATCCCTTAAG
66 ATCCCTTAAG
9420738 TCTTCT
1 TCTTCT
9420744 AGTGAGGATA
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 80 1.00
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.42
Consensus pattern (75 bp):
TCTTCTCTATTTGCCCTTCTTTGTTCTAGAGTATTGATTAGCTATAAGAGTGAAATGGTTGATAG
ATCCCTTAAG
Found at i:9421700 original size:17 final size:17
Alignment explanation
Indices: 9421630--9421701 Score: 51
Period size: 17 Copynumber: 4.2 Consensus size: 17
9421620 AGCTCGCAGG
9421630 TGAGCTCTCAAG-TTTGA
1 TGAGCTCTC-AGTTTTGA
* * *
9421647 TGAGCT-TGTAGTCTTGG
1 TGAGCTCT-CAGTTTTGA
* *
9421664 TGAGCTCGT-AGTGTTAA
1 TGAGCTC-TCAGTTTTGA
9421681 TGAGCTCTCAGTTTTGA
1 TGAGCTCTCAGTTTTGA
9421698 TGAG
1 TGAG
9421702 GTCACAGTTC
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
16 4 0.10
17 37 0.88
19 1 0.02
ACGTcount: A:0.19, C:0.14, G:0.29, T:0.38
Consensus pattern (17 bp):
TGAGCTCTCAGTTTTGA
Found at i:9422117 original size:21 final size:21
Alignment explanation
Indices: 9422079--9422118 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9422069 TTTGTCAAGC
*
9422079 TACTCGAATCAAATATTAAGA
1 TACTCGAATCAAAGATTAAGA
* *
9422100 TACTCGAATTACAGATTAA
1 TACTCGAATCAAAGATTAA
9422119 AATAGAAAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (21 bp):
TACTCGAATCAAAGATTAAGA
Found at i:9423689 original size:246 final size:247
Alignment explanation
Indices: 9423253--9423990 Score: 910
Period size: 246 Copynumber: 2.9 Consensus size: 247
9423243 CAGTGTCATG
* * * * * *
9423253 GTTGATAGATGTACCCTTTGTAGCGGTATTAACACCTAGGATGCCATCAATGGCTTTGAGATTAT
1 GTTGATAGATGTACCCTTTGTAGCGTTATCAACATCTGGGATGCTATCAATGGCCTTGAGATTAT
** * * *
9423318 CTTCCCCTGATGGTG-ATGCATCCATGATACCTTGTTGACGAGACATATTTTGTATTTGTTCACC
66 CTTCCATTGATTGTGAATG--TCCATGATACCTTCTTGACGAGACATATTTTGTATCTGTTCACC
* * * * * *
9423382 ATTTTTTATGCTACTCAAGCTCTTAGCTTCTCCTGCTGAAGTTGATAAGCTAGCGTTGGCTTCAG
129 ATTTTTTATGTTATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAG
* ** * *
9423447 CTTCAGCTAAAATTTTGGACTTGTGTTCAGAATCTTCTGGTTTTGATGC-TTT-
194 CTTCGGCTAATCTTTTGGATTTGTGTTCAGAATCTTCTGGCTTTGATGCTTTTA
*
9423499 GTTGATAGATGTACCCTTTGTAGCGTTATCAACATCTGGGATGCTATCAAGGGCCTTGAGATTAT
1 GTTGATAGATGTACCCTTTGTAGCGTTATCAACATCTGGGATGCTATCAATGGCCTTGAGATTAT
* *
9423564 CTTCCATTGATTGTGACATGTCCATGATACCTTCTTGACGAGACATATTTTGCATCTGTTGACCA
66 CTTCCATTGATTGTGA-ATGTCCATGATACCTTCTTGACGAGACATATTTTGTATCTGTTCACCA
* * * * * *
9423629 ATTCTAATGTTATTCAAGCGGTAAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAAC
130 TTTTTTATGTTATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAGC
*
9423694 TTCGGCTAATCTTTTGGATTTGTGTTCAGAATCTTTTGGCTTTGATGCTTTTGCA
195 TTCGGCTAATCTTTTGGATTTGTGTTCAGAATCTTCTGGCTTTGATGCTTTT--A
*
9423749 GCAAATTCATGGTCGATAGATGTACCCTTTGTAGCATTATCAACATCTGGGATGCTATCAATGGC
1 G--------T--T-GATAGATGTACCCTTTGTAGCGTTATCAACATCTGGGATGCTATCAATGGC
* * *
9423814 CATGCA-ATTATCTTCCATTGATTGTG-ATGTGCCCATGATACCTTCTTGTCGATACATATTTTG
55 CTTG-AGATTATCTTCCATTGATTGTGAATGT--CCATGATACCTTCTTGACGAGACATATTTTG
*
9423877 TATCTGTTCACCATTTTTTATGTAATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAG
117 TATCTGTTCACCATTTTTTATGTTATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAG
* * *
9423942 CATTGGCTTCGGCTTTGGCTAATCTTTTGGATTTATGTTCAGAATCTTC
182 CATTGGCTTCAGCTTCGGCTAATCTTTTGGATTTGTGTTCAGAATCTTC
9423991 AATAGATCCT
Statistics
Matches: 422, Mismatches: 50, Indels: 25
0.85 0.10 0.05
Matches are distributed among these distances:
246 206 0.49
247 3 0.01
248 3 0.01
250 1 0.00
258 1 0.00
259 4 0.01
260 1 0.00
261 202 0.48
262 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (247 bp):
GTTGATAGATGTACCCTTTGTAGCGTTATCAACATCTGGGATGCTATCAATGGCCTTGAGATTAT
CTTCCATTGATTGTGAATGTCCATGATACCTTCTTGACGAGACATATTTTGTATCTGTTCACCAT
TTTTTATGTTATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAGCT
TCGGCTAATCTTTTGGATTTGTGTTCAGAATCTTCTGGCTTTGATGCTTTTA
Found at i:9423966 original size:261 final size:261
Alignment explanation
Indices: 9423502--9423989 Score: 780
Period size: 261 Copynumber: 1.9 Consensus size: 261
9423492 ATGCTTTGTT
* *
9423502 GATAGATGTACCCTTTGTAGCGTTATCAACATCTGGGATGCTATCAAGGGCCTTGAGATTATCTT
1 GATAGATGTACCCTTTGTAGCATTATCAACATCTGGGATGCTATCAAGGGCCATGAGATTATCTT
* *
9423567 CCATTGATTGTGACATGTCCATGATACCTTCTTGACGAGACATATTTTGCATCTGTTGACCAATT
66 CCATTGATTGTGACATGCCCATGATACCTTCTTGACGAGACATATTTTGCATCTGTTCACCAATT
*
9423632 CTAATGTTATTCAAGCGGTAAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAACTTC
131 CTAATGTAATTCAAGCGGTAAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAACTTC
*
9423697 GGCTAATCTTTTGGATTTGTGTTCAGAATCTTTTGGCTTTGATGCTTTTGCAGCAAATTCATGGT
196 GGCTAATCTTTTGGATTTATGTTCAGAATCTTTTGGCTTTGATGCTTTTGCAGCAAATTCATGGT
9423762 C
261 C
*
9423763 GATAGATGTACCCTTTGTAGCATTATCAACATCTGGGATGCTATCAATGGCCATGCA-ATTATCT
1 GATAGATGTACCCTTTGTAGCATTATCAACATCTGGGATGCTATCAAGGGCCATG-AGATTATCT
** * * * *
9423827 TCCATTGATTGTGATGTGCCCATGATACCTTCTTGTCGATACATATTTTGTATCTGTTCACCATT
65 TCCATTGATTGTGACATGCCCATGATACCTTCTTGACGAGACATATTTTGCATCTGTTCACCAAT
* * * * **
9423892 TTTTATGTAATTCAAGCTGTTAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCGGCTT
130 TCTAATGTAATTCAAGCGGTAAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAACTT
*
9423957 TGGCTAATCTTTTGGATTTATGTTCAGAATCTT
195 CGGCTAATCTTTTGGATTTATGTTCAGAATCTT
9423990 CAATAGATCC
Statistics
Matches: 206, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
261 205 1.00
262 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (261 bp):
GATAGATGTACCCTTTGTAGCATTATCAACATCTGGGATGCTATCAAGGGCCATGAGATTATCTT
CCATTGATTGTGACATGCCCATGATACCTTCTTGACGAGACATATTTTGCATCTGTTCACCAATT
CTAATGTAATTCAAGCGGTAAGTTTCTCCTGCTGAAGTTGATAGGCTAGCATTGGCTTCAACTTC
GGCTAATCTTTTGGATTTATGTTCAGAATCTTTTGGCTTTGATGCTTTTGCAGCAAATTCATGGT
C
Found at i:9433768 original size:2 final size:2
Alignment explanation
Indices: 9433761--9433859 Score: 81
Period size: 2 Copynumber: 49.5 Consensus size: 2
9433751 TGAACACCCA
*
9433761 AC AC AC AC AC AT AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
* * * * * * * * * * * *
9433803 AC GC AC GC AC GC AC GC AC GC AC GC AC GC GC GC GC GC GC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
9433845 AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC A
9433860 TATATATATC
Statistics
Matches: 81, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 81 1.00
ACGTcount: A:0.38, C:0.48, G:0.12, T:0.01
Consensus pattern (2 bp):
AC
Found at i:9435814 original size:33 final size:33
Alignment explanation
Indices: 9435772--9435838 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
9435762 AGACAAGTTG
*
9435772 AAGAAGAAAGAAAAAAATGGTTTGTCTTGTTTT
1 AAGAAGAAAGAAAAAAATGGTTTGTCTTATTTT
9435805 AAGAAGAAAGAAAAAAATGGTTTGTCTTATTTT
1 AAGAAGAAAGAAAAAAATGGTTTGTCTTATTTT
9435838 A
1 A
9435839 TTTTACTACG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.45, C:0.03, G:0.19, T:0.33
Consensus pattern (33 bp):
AAGAAGAAAGAAAAAAATGGTTTGTCTTATTTT
Found at i:9439543 original size:25 final size:26
Alignment explanation
Indices: 9439512--9439634 Score: 142
Period size: 26 Copynumber: 4.8 Consensus size: 26
9439502 CTCTTTCAAT
*
9439512 AACTGGGGCA-AAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
9439537 AATTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* *
9439562 AACTAGGGCATAAGCCATTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
9439588 AACTGGGGCATAAGTCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
9439614 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
9439635 GCACTTCCTC
Statistics
Matches: 81, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
25 29 0.36
26 52 0.64
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:9439620 original size:52 final size:51
Alignment explanation
Indices: 9439505--9439634 Score: 192
Period size: 52 Copynumber: 2.6 Consensus size: 51
9439495 GCCTAGCCTC
* * *
9439505 TTTCAAT-AACTGGGGCA-AAGCCCTTTTTGGTAAATTGGGGCAAAGCCCT
1 TTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCT
* *
9439554 TTTCAATAAACTAGGGCATAAGCCATTTTCGGTAAACTGGGGCATAAGTCCT
1 TTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCT
9439606 TTTCAATAAACTAGGGCATAAGCCCTTTT
1 TTTCAATAAACTAGGGCATAAGCCCTTTT
9439635 GCACTTCCTC
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
49 7 0.10
50 9 0.12
51 22 0.31
52 34 0.47
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (51 bp):
TTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCT
Found at i:9439709 original size:20 final size:20
Alignment explanation
Indices: 9439684--9439758 Score: 84
Period size: 20 Copynumber: 3.9 Consensus size: 20
9439674 TTATGAATTC
*
9439684 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
9439704 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* **
9439724 GTCATGTATATATCATATCA-
1 ATCATGTGCATATCATA-CAT
9439744 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
9439759 TCCCGCGTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
18 8 0.16
20 39 0.80
21 2 0.04
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:9439814 original size:25 final size:25
Alignment explanation
Indices: 9439786--9439833 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
9439776 ATAATTAAAC
* * *
9439786 CCTAGGGGTATAATAGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
9439811 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
9439834 AATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:9446760 original size:18 final size:18
Alignment explanation
Indices: 9446734--9446768 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9446724 TCGTAACATT
*
9446734 GTGTTGTTTGGAAAACAA
1 GTGTCGTTTGGAAAACAA
*
9446752 GTGTCGTTTTGAAAACA
1 GTGTCGTTTGGAAAACA
9446769 CATCCTAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (18 bp):
GTGTCGTTTGGAAAACAA
Found at i:9447412 original size:25 final size:26
Alignment explanation
Indices: 9447384--9447480 Score: 135
Period size: 25 Copynumber: 3.8 Consensus size: 26
9447374 CTCTTTCAAT
*
9447384 AACTGGGGCA-AAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
9447409 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* *
9447434 AACTGGGGTATAAGCCATTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
9447460 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
9447481 GCACTTCCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
25 31 0.50
26 31 0.50
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:9447464 original size:51 final size:50
Alignment explanation
Indices: 9447377--9447480 Score: 156
Period size: 51 Copynumber: 2.1 Consensus size: 50
9447367 GCCTAGCCTC
* *
9447377 TTTCAATAACTGGGGCAAAGCCCTTTTTGGTAAACTGGGGCA-AAGCCCT
1 TTTCAATAACTGGGGCAAAGCCATTTTCGGTAAACTGGGGCATAAGCCCT
*
9447426 TTTCAATAAACTGGGGTATAAGCCATTTTCGGTAAACTGGGGCATAAGCCCT
1 TTTCAAT-AACTGGGGCA-AAGCCATTTTCGGTAAACTGGGGCATAAGCCCT
9447478 TTT
1 TTT
9447481 GCACTTCCTC
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
49 7 0.14
50 9 0.18
51 23 0.47
52 10 0.20
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (50 bp):
TTTCAATAACTGGGGCAAAGCCATTTTCGGTAAACTGGGGCATAAGCCCT
Found at i:9447555 original size:20 final size:20
Alignment explanation
Indices: 9447530--9447604 Score: 84
Period size: 20 Copynumber: 3.9 Consensus size: 20
9447520 TTATGAATTC
* *
9447530 ATCATGTGCATTTCGTACAT
1 ATCATGTGCATATCATACAT
*
9447550 ATCATGTGTATATCATACAT
1 ATCATGTGCATATCATACAT
*
9447570 GTCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
9447590 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
9447605 TCCCACGTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
18 8 0.17
20 38 0.79
21 2 0.04
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:9466723 original size:22 final size:22
Alignment explanation
Indices: 9466675--9466723 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
9466665 TGTCTAATTA
*
9466675 AATTTAAAAATAATTTATTAAT
1 AATTAAAAAATAATTTATTAAT
* *
9466697 TATTAAAAAATATTTTATGT-AT
1 AATTAAAAAATAATTTAT-TAAT
9466719 AATTA
1 AATTA
9466724 TGTTAAATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
AATTAAAAAATAATTTATTAAT
Found at i:9473271 original size:18 final size:18
Alignment explanation
Indices: 9473248--9473283 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
9473238 TGTGGCCAAA
9473248 TCAAAAAGATAGAGAAAG
1 TCAAAAAGATAGAGAAAG
9473266 TCAAAAAGATAGAGAAAG
1 TCAAAAAGATAGAGAAAG
9473284 CCAAGGAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.06, G:0.22, T:0.11
Consensus pattern (18 bp):
TCAAAAAGATAGAGAAAG
Found at i:9473932 original size:14 final size:13
Alignment explanation
Indices: 9473877--9474014 Score: 54
Period size: 14 Copynumber: 9.9 Consensus size: 13
9473867 TTATTGCTAT
9473877 TATTATTATGTTTC
1 TATTATTAT-TTTC
9473891 TATT-TATATTTT-
1 TATTAT-TATTTTC
* * *
9473903 T-TTATTCTAATAC
1 TATTATTAT-TTTC
9473916 TATTATTATTTATC
1 TATTATTATTT-TC
9473930 TATT-TATATTTCTAC
1 TATTAT-TATTT-T-C
9473945 TATTATTATATTTC
1 TATTATTAT-TTTC
*
9473959 TATTTATTATATTTT
1 TA-TTATTAT-TTTC
9473974 TATT-TCTATTTATATAC
1 TATTAT-TA-TT-T-T-C
*
9473991 TAATATTATTTTC
1 TATTATTATTTTC
9474004 -ATTATTATTTT
1 TATTATTATTTT
9474015 TCTTATATAT
Statistics
Matches: 96, Mismatches: 11, Indels: 36
0.67 0.08 0.25
Matches are distributed among these distances:
11 4 0.04
12 13 0.14
13 9 0.09
14 33 0.34
15 25 0.26
16 6 0.06
17 5 0.05
18 1 0.01
ACGTcount: A:0.28, C:0.07, G:0.01, T:0.64
Consensus pattern (13 bp):
TATTATTATTTTC
Found at i:9473965 original size:15 final size:15
Alignment explanation
Indices: 9473933--9473978 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
9473923 ATTTATCTAT
9473933 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
9473950 TTATATTTCTATTTA
1 TTATATTTCTATTTA
*
9473965 TTATATTTTTATTT
1 TTATATTTCTATTT
9473979 CTATTTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:9474086 original size:24 final size:23
Alignment explanation
Indices: 9474059--9474103 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
9474049 TTCTATTTAT
* *
9474059 TTATTTATTTTACATTTTTTATTA
1 TTATGTATTTTA-ACTTTTTATTA
9474083 TTATGTATTTTAACTTTTTAT
1 TTATGTATTTTAACTTTTTAT
9474104 ATAACGCTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.69
Consensus pattern (23 bp):
TTATGTATTTTAACTTTTTATTA
Found at i:9474174 original size:25 final size:23
Alignment explanation
Indices: 9474074--9474175 Score: 68
Period size: 25 Copynumber: 4.2 Consensus size: 23
9474064 TATTTTACAT
*
9474074 TTTTTAT-TATTATGTATTTTAAC
1 TTTTTATATATTATGTA-TTTAAA
*
9474097 TTTTTATATA--ACGCTCATTTCAAA
1 TTTTTATATATTATG-T-ATTT-AAA
*
9474121 TTTTTATACATTACT-TACTTTAATA
1 TTTTTATATATTA-TGTA-TTTAA-A
9474146 TTTTTATATATTATGTATTTCAAA
1 TTTTTATATATTATGTATTT-AAA
9474170 CTTTTT
1 -TTTTT
9474176 TTTGCACATT
Statistics
Matches: 62, Mismatches: 5, Indels: 22
0.70 0.06 0.25
Matches are distributed among these distances:
22 2 0.03
23 11 0.18
24 22 0.35
25 26 0.42
26 1 0.02
ACGTcount: A:0.29, C:0.10, G:0.03, T:0.58
Consensus pattern (23 bp):
TTTTTATATATTATGTATTTAAA
Found at i:9474215 original size:21 final size:22
Alignment explanation
Indices: 9474185--9474238 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
9474175 TTTTGCACAT
**
9474185 TATA-TATTTTGAATTA-TTTA
1 TATATTATTTTGAAAGAGTTTA
*
9474205 TATATTATTTTTAAAGAGTTTTA
1 TATATTATTTTGAAAGAG-TTTA
9474228 TATATTATTTT
1 TATATTATTTT
9474239 ATCTTGAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 4 0.14
21 9 0.32
23 15 0.54
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (22 bp):
TATATTATTTTGAAAGAGTTTA
Found at i:9480992 original size:132 final size:131
Alignment explanation
Indices: 9480754--9481058 Score: 371
Period size: 132 Copynumber: 2.3 Consensus size: 131
9480744 AAAAATCTCG
* * * * * ** *
9480754 ACTAGCCTTATCTCTCTAAGTAGTAGGGATCAGGCTGAAGATTGTAGATCTTATCTCCCTAAGCA
1 ACTAGCCTTATCTCCCTAAGCAGTAGGGAACAGGCTAAAAATTACAGATCTTATCTCCCTAAACA
* * * * * * *
9480819 GTAAGGGAACAGATCGAAGACGGTGAATCTTATCTCCATGTAGCGGCAAGGGAGCAGATTTAAGC
66 ATAAGGGAACAGATCAAAGACGATGAATCGTATCTCAATGTAGCGGCAAGGGAACAGATTTAAAC
9480884 C
131 C
* *
9480885 ACTAGTCTTATCTCCCTAAGCAGTAGTGGAACGGGCTAAAAATTACAGATCTTATCTCCCTAAAC
1 ACTAGCCTTATCTCCCTAAGCAGTAG-GGAACAGGCTAAAAATTACAGATCTTATCTCCCTAAAC
* * * *
9480950 AAT-AGTGGAGCAGATCAAAGACGATGAATCGTATCTCAATGTAGTGGCAATGGAATAGATTTAA
65 AATAAG-GGAACAGATCAAAGACGATGAATCGTATCTCAATGTAGCGGCAAGGGAACAGATTTAA
9481014 ACC
129 ACC
*
9481017 ACTAGCCTTATC-CCTCTAAGCAGTAGGGAACAAGCTAAAAAT
1 ACTAGCCTTATCTCC-CTAAGCAGTAGGGAACAGGCTAAAAAT
9481059 GACATACCAC
Statistics
Matches: 147, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
131 41 0.28
132 106 0.72
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (131 bp):
ACTAGCCTTATCTCCCTAAGCAGTAGGGAACAGGCTAAAAATTACAGATCTTATCTCCCTAAACA
ATAAGGGAACAGATCAAAGACGATGAATCGTATCTCAATGTAGCGGCAAGGGAACAGATTTAAAC
C
Found at i:9481201 original size:88 final size:88
Alignment explanation
Indices: 9481020--9481595 Score: 577
Period size: 88 Copynumber: 6.5 Consensus size: 88
9481010 TTAAACCACT
* * * * * * *
9481020 AGCCTTATCCCTCTAAGCAGTAGGG-AACAAGCTAAAAATGACATACCACCCTATCTCCCTAAAC
1 AGCCTTATCCCCCTAAGCAGTAGGGAAACAAGCTGAAAATTAC--A-GATCTTATCTCCCTAAGC
* * * * *
9481084 AGTAATGGTGTAGGTTGAAGACGGTG
63 AGTAGTGGAGCAGATCGAAGACGGTG
* * *
9481110 AGCCTCATCCCCATAAGCAGTAGGGAAACAAGCTGAAAATTACAGATCTTATCTCCCTAAGCAAT
1 AGCCTTATCCCCCTAAGCAGTAGGGAAACAAGCTGAAAATTACAGATCTTATCTCCCTAAGCAGT
* * *
9481175 AGTGGAGAAGGTCGAAGATGGTG
66 AGTGGAGCAGATCGAAGACGGTG
* * * * * * *
9481198 AGCCTTATCCCCTTAAGCAACTA-GAAAACAGGCTGAAAATGACAGACCACCCTATCTCCCTAAG
1 AGCCTTATCCCCCTAAGC-AGTAGGGAAACAAGCTGAAAATTACAG---ATCTTATCTCCCTAAG
* * * *
9481262 CAGTAATGGAGTAGGTTGAAGACGGTG
62 CAGTAGTGGAGCAGATCGAAGACGGTG
* * * * *
9481289 AGCCTTGTCCCCCTAAGCAGTAGGGAAATAGGCTGAAAATTGCAGATCTTATCTCCCTAAGTAGT
1 AGCCTTATCCCCCTAAGCAGTAGGGAAACAAGCTGAAAATTACAGATCTTATCTCCCTAAGCAGT
9481354 AGTGGAGCAGATCGAAGACGGTG
66 AGTGGAGCAGATCGAAGACGGTG
* * * * *
9481377 AGCCTTATCCCCCTAAGTAGTAGGGAAACATGTTGGAAGTTACAGATCTTATCTCCCTAAGCAGT
1 AGCCTTATCCCCCTAAGCAGTAGGGAAACAAGCTGAAAATTACAGATCTTATCTCCCTAAGCAGT
9481442 AGTGGAGCAGATCGAAGACGGTG
66 AGTGGAGCAGATCGAAGACGGTG
* * *
9481465 AGCCTTATCCCCTTAAGCAGTAGGG-AA-TAGACT-AGAAATTACAGATCTTATCTCCCTAAGTA
1 AGCCTTATCCCCCTAAGCAGTAGGGAAACAAG-CTGA-AAATTACAGATCTTATCTCCCTAAGCA
*
9481527 GTAGTGGAGCAGATCGAAGACAGTG
64 GTAGTGGAGCAGATCGAAGACGGTG
* * * * * * * *
9481552 AACCTTAACCACCTAAACAGTAAGGCAACAGGCTGAAGATTACA
1 AGCCTTATCCCCCTAAGCAGTAGGGAAACAAGCTGAAAATTACA
9481596 AATCATAAGC
Statistics
Matches: 406, Mismatches: 69, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
86 1 0.00
87 71 0.17
88 218 0.54
89 6 0.01
90 25 0.06
91 85 0.21
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (88 bp):
AGCCTTATCCCCCTAAGCAGTAGGGAAACAAGCTGAAAATTACAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAGACGGTG
Found at i:9481206 original size:44 final size:44
Alignment explanation
Indices: 9481157--9481487 Score: 144
Period size: 44 Copynumber: 7.5 Consensus size: 44
9481147 AATTACAGAT
*
9481157 CTTATCTCCCTAAGCAATAGTGGAGAAGGTCGAAGATGGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGAAGGTCGAAGATGGTGAGC
* * * * ** *
9481201 CTTATC-CCCTTAAGCA--ACTAGAAAACAGG-CTGAAAATGACAGACCAC
1 CTTATCTCCC-TAAGCAGTAGT-GGAGA-AGGTC-GAAGATG-GTGA--GC
* * * * *
9481248 CCTATCTCCCTAAGCAGTAATGGAGTAGGTTGAAGACGGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGAAGGTCGAAGATGGTGAGC
* * * * *
9481292 CTTGTCCCCCTAAGCAGTAG-GGAAATAGG-CTGAAAAT--TGCAGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGA-AGGTC-GAAGATGGTG-AG-C
* * * *
9481336 CTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGAAGGTCGAAGATGGTGAGC
* * * * * * *** *
9481380 CTTATCCCCCTAAGTAGTAG-GGAAACATGTTGGAAGTTACAGA-T
1 CTTATCTCCCTAAGCAGTAGTGGAGA-A-GGTCGAAGATGGTGAGC
* * *
9481424 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGAAGGTCGAAGATGGTGAGC
9481468 CTTATC-CCCTTAAGCAGTAG
1 CTTATCTCCC-TAAGCAGTAG
9481488 GGAATAGACT
Statistics
Matches: 203, Mismatches: 60, Indels: 48
0.65 0.19 0.15
Matches are distributed among these distances:
42 4 0.02
43 26 0.13
44 123 0.61
45 19 0.09
46 4 0.02
47 20 0.10
48 5 0.02
49 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.23
Consensus pattern (44 bp):
CTTATCTCCCTAAGCAGTAGTGGAGAAGGTCGAAGATGGTGAGC
Found at i:9481359 original size:179 final size:178
Alignment explanation
Indices: 9481020--9481558 Score: 676
Period size: 179 Copynumber: 3.0 Consensus size: 178
9481010 TTAAACCACT
* * * *
9481020 AGCCTTAT-CCCTCTAAGCAGTAGGGAACAAGCTAAAAATGACATACCACCCTATCTCCCTAAAC
1 AGCCTTATCCCCT-TAAGCAGTAGGAAACAAGCTGAAAATGACAGACCACCCTATCTCCCTAAGC
* * * *
9481084 AGTAATGGTGTAGGTTGAAGACGGTGAGCCTCATCCCCATAAGCAGTAGGGAAACAAGCTGAAAA
65 AGTAATGGAGTAGGTTGAAGACGGTGAGCCTTATCCCCATAAGCAGTAGGGAAATAGGCTGAAAA
* * * * *
9481149 TTACAGATCTTATCTCCCTAAGCAATAGTGGAGAAGGTCGAAGATGGTG
130 TTACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTG
* * *
9481198 AGCCTTATCCCCTTAAGCAACTAGAAAACAGGCTGAAAATGACAGACCACCCTATCTCCCTAAGC
1 AGCCTTATCCCCTTAAGC-AGTAGGAAACAAGCTGAAAATGACAGACCACCCTATCTCCCTAAGC
* *
9481263 AGTAATGGAGTAGGTTGAAGACGGTGAGCCTTGTCCCCCTAAGCAGTAGGGAAATAGGCTGAAAA
65 AGTAATGGAGTAGGTTGAAGACGGTGAGCCTTATCCCCATAAGCAGTAGGGAAATAGGCTGAAAA
*
9481328 TTGCAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTG
130 TTACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTG
* * * * * * * * *
9481377 AGCCTTATCCCCCTAAGTAGTAGGGAAACATGTTGGAAGTTACAG---ATCTTATCTCCCTAAGC
1 AGCCTTATCCCCTTAAGCAGTA-GGAAACAAGCTGAAAATGACAGACCACCCTATCTCCCTAAGC
* * * * * *
9481439 AGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCTTAAGCAGTAGGG-AATAGACT-AGAA
65 AGTAATGGAGTAGGTTGAAGACGGTGAGCCTTATCCCCATAAGCAGTAGGGAAATAGGCTGA-AA
*
9481502 ATTACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACAGTG
129 ATTACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTG
*
9481552 AACCTTA
1 AGCCTTA
9481559 ACCACCTAAA
Statistics
Matches: 317, Mismatches: 40, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
174 1 0.00
175 63 0.20
176 60 0.19
178 16 0.05
179 177 0.56
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.22
Consensus pattern (178 bp):
AGCCTTATCCCCTTAAGCAGTAGGAAACAAGCTGAAAATGACAGACCACCCTATCTCCCTAAGCA
GTAATGGAGTAGGTTGAAGACGGTGAGCCTTATCCCCATAAGCAGTAGGGAAATAGGCTGAAAAT
TACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTG
Done.